Multiple sequence alignment - TraesCS2B01G510600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G510600 chr2B 100.000 4786 0 0 1 4786 706583958 706588743 0.000000e+00 8839.0
1 TraesCS2B01G510600 chr2D 97.020 3658 79 14 1151 4786 263423692 263420043 0.000000e+00 6124.0
2 TraesCS2B01G510600 chr2D 96.884 3658 89 12 1151 4786 575269882 575266228 0.000000e+00 6100.0
3 TraesCS2B01G510600 chr2D 95.838 2475 53 13 2334 4786 118381872 118379426 0.000000e+00 3954.0
4 TraesCS2B01G510600 chr2D 97.943 1118 22 1 1161 2277 118382985 118381868 0.000000e+00 1936.0
5 TraesCS2B01G510600 chr2D 93.187 866 55 2 1 866 131655454 131654593 0.000000e+00 1269.0
6 TraesCS2B01G510600 chr2D 90.536 317 28 1 866 1180 575270233 575269917 7.410000e-113 418.0
7 TraesCS2B01G510600 chr2D 93.562 233 14 1 948 1180 118383282 118383051 3.550000e-91 346.0
8 TraesCS2B01G510600 chr4D 96.910 3657 87 11 1151 4786 264461607 264465258 0.000000e+00 6104.0
9 TraesCS2B01G510600 chr4D 93.303 866 56 1 1 866 44729598 44730461 0.000000e+00 1277.0
10 TraesCS2B01G510600 chr4D 93.697 238 13 2 945 1180 264461335 264461572 5.890000e-94 355.0
11 TraesCS2B01G510600 chr4D 95.122 123 4 2 864 986 30345097 30345217 4.890000e-45 193.0
12 TraesCS2B01G510600 chr4A 95.455 3696 134 14 1118 4786 359640138 359636450 0.000000e+00 5864.0
13 TraesCS2B01G510600 chr4A 91.772 316 25 1 865 1180 359640455 359640141 5.690000e-119 438.0
14 TraesCS2B01G510600 chr4A 89.969 319 27 5 866 1180 725532129 725532446 1.600000e-109 407.0
15 TraesCS2B01G510600 chr3B 97.516 2415 57 2 1811 4223 739840915 739843328 0.000000e+00 4124.0
16 TraesCS2B01G510600 chr3B 92.344 1698 72 16 3107 4786 758392218 758393875 0.000000e+00 2362.0
17 TraesCS2B01G510600 chr3B 94.508 1056 33 9 2068 3107 758390654 758391700 0.000000e+00 1605.0
18 TraesCS2B01G510600 chr3B 94.014 735 25 6 4070 4786 68248658 68249391 0.000000e+00 1096.0
19 TraesCS2B01G510600 chr3B 90.492 589 20 14 946 1506 739839684 739840264 0.000000e+00 745.0
20 TraesCS2B01G510600 chr3B 97.826 276 5 1 1499 1774 739840645 739840919 4.330000e-130 475.0
21 TraesCS2B01G510600 chr3B 92.574 202 15 0 1435 1636 758389167 758389368 1.680000e-74 291.0
22 TraesCS2B01G510600 chr3B 85.227 176 16 7 3107 3282 68212897 68213062 6.370000e-39 172.0
23 TraesCS2B01G510600 chr6A 97.505 2405 52 5 1157 3557 526164832 526162432 0.000000e+00 4102.0
24 TraesCS2B01G510600 chr6A 92.128 1626 95 15 3190 4786 393799773 393801394 0.000000e+00 2263.0
25 TraesCS2B01G510600 chr6A 96.058 1243 30 7 3562 4786 526162359 526161118 0.000000e+00 2006.0
26 TraesCS2B01G510600 chr6A 89.015 264 18 7 921 1180 526165135 526164879 2.780000e-82 316.0
27 TraesCS2B01G510600 chr6A 88.776 196 18 3 989 1180 54085943 54086138 2.230000e-58 237.0
28 TraesCS2B01G510600 chr6D 92.290 1699 93 19 3107 4786 249490104 249491783 0.000000e+00 2377.0
29 TraesCS2B01G510600 chr6D 93.176 381 20 5 2731 3107 249489221 249489599 5.410000e-154 555.0
30 TraesCS2B01G510600 chr3D 93.533 866 54 1 1 866 529558422 529559285 0.000000e+00 1288.0
31 TraesCS2B01G510600 chr3D 93.418 866 54 2 1 866 410601636 410600774 0.000000e+00 1280.0
32 TraesCS2B01G510600 chr3D 95.968 124 4 1 864 986 574894605 574894482 2.920000e-47 200.0
33 TraesCS2B01G510600 chr3D 91.667 48 1 2 1794 1841 600410875 600410919 4.000000e-06 63.9
34 TraesCS2B01G510600 chr5D 93.310 867 54 3 1 866 464182526 464181663 0.000000e+00 1277.0
35 TraesCS2B01G510600 chr5D 93.203 868 57 1 1 868 503563653 503562788 0.000000e+00 1275.0
36 TraesCS2B01G510600 chr5D 93.187 866 57 1 1 866 550669760 550668897 0.000000e+00 1271.0
37 TraesCS2B01G510600 chr5D 83.803 142 19 2 3849 3989 175959222 175959360 1.080000e-26 132.0
38 TraesCS2B01G510600 chr1D 93.195 867 55 3 1 866 332340619 332339756 0.000000e+00 1271.0
39 TraesCS2B01G510600 chr1D 93.187 866 57 1 1 866 341054728 341053865 0.000000e+00 1271.0
40 TraesCS2B01G510600 chr1D 91.951 820 40 12 3986 4786 209542958 209542146 0.000000e+00 1125.0
41 TraesCS2B01G510600 chr1D 94.159 719 37 5 3278 3992 209571764 209571047 0.000000e+00 1090.0
42 TraesCS2B01G510600 chr1D 90.143 558 26 3 2348 2903 209572300 209571770 0.000000e+00 699.0
43 TraesCS2B01G510600 chr1D 94.704 321 17 0 1587 1907 209725239 209724919 2.570000e-137 499.0
44 TraesCS2B01G510600 chr1D 93.214 280 18 1 1175 1453 209725515 209725236 1.240000e-110 411.0
45 TraesCS2B01G510600 chr1D 92.529 174 12 1 1008 1180 395800053 395800226 1.030000e-61 248.0
46 TraesCS2B01G510600 chr1D 97.778 45 1 0 1904 1948 209635207 209635163 1.430000e-10 78.7
47 TraesCS2B01G510600 chr5B 91.585 820 43 13 3986 4786 203450729 203451541 0.000000e+00 1109.0
48 TraesCS2B01G510600 chr5B 86.176 557 26 4 2348 2903 203340923 203341429 5.410000e-154 555.0
49 TraesCS2B01G510600 chr5B 91.883 308 25 0 1600 1907 203112650 203112957 9.520000e-117 431.0
50 TraesCS2B01G510600 chr5B 97.778 45 1 0 1904 1948 203295909 203295953 1.430000e-10 78.7
51 TraesCS2B01G510600 chr4B 87.117 784 54 21 865 1609 626780521 626781296 0.000000e+00 845.0
52 TraesCS2B01G510600 chr4B 92.258 155 7 3 865 1015 37091891 37092044 1.040000e-51 215.0
53 TraesCS2B01G510600 chr7D 91.919 297 23 1 1911 2206 613624406 613624702 9.580000e-112 414.0
54 TraesCS2B01G510600 chr7D 85.455 385 36 5 1181 1548 613623834 613624215 2.700000e-102 383.0
55 TraesCS2B01G510600 chr7B 77.295 621 101 29 1907 2502 728932657 728933262 3.570000e-86 329.0
56 TraesCS2B01G510600 chr7B 88.889 234 24 2 1975 2206 704287701 704287934 2.180000e-73 287.0
57 TraesCS2B01G510600 chr7B 84.472 161 19 3 1789 1946 704287548 704287705 2.310000e-33 154.0
58 TraesCS2B01G510600 chr7A 76.823 617 105 25 1915 2502 705295436 705296043 3.600000e-81 313.0
59 TraesCS2B01G510600 chr3A 92.188 192 13 2 991 1180 648609607 648609416 2.200000e-68 270.0
60 TraesCS2B01G510600 chr6B 93.798 129 6 2 862 988 79872957 79872829 4.890000e-45 193.0
61 TraesCS2B01G510600 chr1B 92.857 126 7 2 865 988 12933689 12933564 1.060000e-41 182.0
62 TraesCS2B01G510600 chr5A 91.667 48 1 2 1794 1841 310016605 310016649 4.000000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G510600 chr2B 706583958 706588743 4785 False 8839.000000 8839 100.000000 1 4786 1 chr2B.!!$F1 4785
1 TraesCS2B01G510600 chr2D 263420043 263423692 3649 True 6124.000000 6124 97.020000 1151 4786 1 chr2D.!!$R2 3635
2 TraesCS2B01G510600 chr2D 575266228 575270233 4005 True 3259.000000 6100 93.710000 866 4786 2 chr2D.!!$R4 3920
3 TraesCS2B01G510600 chr2D 118379426 118383282 3856 True 2078.666667 3954 95.781000 948 4786 3 chr2D.!!$R3 3838
4 TraesCS2B01G510600 chr2D 131654593 131655454 861 True 1269.000000 1269 93.187000 1 866 1 chr2D.!!$R1 865
5 TraesCS2B01G510600 chr4D 264461335 264465258 3923 False 3229.500000 6104 95.303500 945 4786 2 chr4D.!!$F3 3841
6 TraesCS2B01G510600 chr4D 44729598 44730461 863 False 1277.000000 1277 93.303000 1 866 1 chr4D.!!$F2 865
7 TraesCS2B01G510600 chr4A 359636450 359640455 4005 True 3151.000000 5864 93.613500 865 4786 2 chr4A.!!$R1 3921
8 TraesCS2B01G510600 chr3B 739839684 739843328 3644 False 1781.333333 4124 95.278000 946 4223 3 chr3B.!!$F3 3277
9 TraesCS2B01G510600 chr3B 758389167 758393875 4708 False 1419.333333 2362 93.142000 1435 4786 3 chr3B.!!$F4 3351
10 TraesCS2B01G510600 chr3B 68248658 68249391 733 False 1096.000000 1096 94.014000 4070 4786 1 chr3B.!!$F2 716
11 TraesCS2B01G510600 chr6A 393799773 393801394 1621 False 2263.000000 2263 92.128000 3190 4786 1 chr6A.!!$F2 1596
12 TraesCS2B01G510600 chr6A 526161118 526165135 4017 True 2141.333333 4102 94.192667 921 4786 3 chr6A.!!$R1 3865
13 TraesCS2B01G510600 chr6D 249489221 249491783 2562 False 1466.000000 2377 92.733000 2731 4786 2 chr6D.!!$F1 2055
14 TraesCS2B01G510600 chr3D 529558422 529559285 863 False 1288.000000 1288 93.533000 1 866 1 chr3D.!!$F1 865
15 TraesCS2B01G510600 chr3D 410600774 410601636 862 True 1280.000000 1280 93.418000 1 866 1 chr3D.!!$R1 865
16 TraesCS2B01G510600 chr5D 464181663 464182526 863 True 1277.000000 1277 93.310000 1 866 1 chr5D.!!$R1 865
17 TraesCS2B01G510600 chr5D 503562788 503563653 865 True 1275.000000 1275 93.203000 1 868 1 chr5D.!!$R2 867
18 TraesCS2B01G510600 chr5D 550668897 550669760 863 True 1271.000000 1271 93.187000 1 866 1 chr5D.!!$R3 865
19 TraesCS2B01G510600 chr1D 332339756 332340619 863 True 1271.000000 1271 93.195000 1 866 1 chr1D.!!$R3 865
20 TraesCS2B01G510600 chr1D 341053865 341054728 863 True 1271.000000 1271 93.187000 1 866 1 chr1D.!!$R4 865
21 TraesCS2B01G510600 chr1D 209542146 209542958 812 True 1125.000000 1125 91.951000 3986 4786 1 chr1D.!!$R1 800
22 TraesCS2B01G510600 chr1D 209571047 209572300 1253 True 894.500000 1090 92.151000 2348 3992 2 chr1D.!!$R5 1644
23 TraesCS2B01G510600 chr1D 209724919 209725515 596 True 455.000000 499 93.959000 1175 1907 2 chr1D.!!$R6 732
24 TraesCS2B01G510600 chr5B 203450729 203451541 812 False 1109.000000 1109 91.585000 3986 4786 1 chr5B.!!$F4 800
25 TraesCS2B01G510600 chr5B 203340923 203341429 506 False 555.000000 555 86.176000 2348 2903 1 chr5B.!!$F3 555
26 TraesCS2B01G510600 chr4B 626780521 626781296 775 False 845.000000 845 87.117000 865 1609 1 chr4B.!!$F2 744
27 TraesCS2B01G510600 chr7D 613623834 613624702 868 False 398.500000 414 88.687000 1181 2206 2 chr7D.!!$F1 1025
28 TraesCS2B01G510600 chr7B 728932657 728933262 605 False 329.000000 329 77.295000 1907 2502 1 chr7B.!!$F1 595
29 TraesCS2B01G510600 chr7A 705295436 705296043 607 False 313.000000 313 76.823000 1915 2502 1 chr7A.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
970 975 0.041238 TTCGTCATCCTCCCACCTCT 59.959 55.0 0.0 0.0 0.0 3.69 F
2386 3913 0.103208 GGAGATGTCGTCCGCTTCAT 59.897 55.0 0.0 0.0 0.0 2.57 F
2391 3918 1.107945 TGTCGTCCGCTTCATATCCA 58.892 50.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2391 3918 1.066143 ACTCGATTCCTGGCGTCATTT 60.066 47.619 0.0 0.0 0.0 2.32 R
3745 5900 2.345244 CACCGCTGCTCACCTTCT 59.655 61.111 0.0 0.0 0.0 2.85 R
3812 5970 3.002583 TGTGCGGCCCTCTCATCA 61.003 61.111 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.928706 CACTAGGAGATAATAAACCAACTCCAG 59.071 40.741 0.00 0.00 44.11 3.86
86 87 1.490490 AGCACAGAGAAACCCAACTCA 59.510 47.619 0.00 0.00 35.83 3.41
149 150 3.004734 CGCTCCAGTCCAACAAAAGAATT 59.995 43.478 0.00 0.00 0.00 2.17
283 284 7.907563 GCTTAACAGATAGAAGAATTTCTGCAC 59.092 37.037 7.15 0.00 43.41 4.57
287 288 5.879223 CAGATAGAAGAATTTCTGCACTGGT 59.121 40.000 7.15 0.00 43.41 4.00
293 294 4.184629 AGAATTTCTGCACTGGTATCGTC 58.815 43.478 0.00 0.00 0.00 4.20
295 296 5.127194 AGAATTTCTGCACTGGTATCGTCTA 59.873 40.000 0.00 0.00 0.00 2.59
296 297 5.537300 ATTTCTGCACTGGTATCGTCTAT 57.463 39.130 0.00 0.00 0.00 1.98
304 305 5.524284 CACTGGTATCGTCTATGAGGAAAG 58.476 45.833 0.00 0.00 30.29 2.62
483 484 9.366216 GTTGATTTTTGTAAGGAAAACTGTCTT 57.634 29.630 0.00 0.00 0.00 3.01
515 516 1.479730 TCCTGAGCTGCATGAGTGTAG 59.520 52.381 1.02 0.00 40.58 2.74
620 621 3.643792 ACCTTACCTGGCTGATGATAGTC 59.356 47.826 0.00 0.00 0.00 2.59
636 637 4.570369 TGATAGTCGTGCCATATTGTGTTG 59.430 41.667 0.00 0.00 0.00 3.33
677 678 3.516615 CCCAAACGTTTGTTGTGTCAAT 58.483 40.909 32.63 0.00 38.62 2.57
678 679 3.929610 CCCAAACGTTTGTTGTGTCAATT 59.070 39.130 32.63 0.00 38.62 2.32
710 711 7.387265 TTCCTATTATCTGACTTGGCCAATA 57.613 36.000 20.85 4.14 0.00 1.90
720 721 4.955450 TGACTTGGCCAATAATAGCAATGT 59.045 37.500 20.85 9.12 0.00 2.71
730 731 7.220683 GCCAATAATAGCAATGTTAGTGTGTTG 59.779 37.037 0.00 0.00 0.00 3.33
741 742 4.158579 TGTTAGTGTGTTGATTTGGTGCAA 59.841 37.500 0.00 0.00 0.00 4.08
781 782 4.943705 AGACAAACTCTGAAAACAGCAAGA 59.056 37.500 0.00 0.00 0.00 3.02
788 789 1.403679 TGAAAACAGCAAGACAACCCG 59.596 47.619 0.00 0.00 0.00 5.28
833 834 8.449423 TCTAGGCCAGGTAATATGACAATAAT 57.551 34.615 5.01 0.00 0.00 1.28
970 975 0.041238 TTCGTCATCCTCCCACCTCT 59.959 55.000 0.00 0.00 0.00 3.69
993 998 4.339814 TGTTAACTCGCAACCCTCAAAAAT 59.660 37.500 7.22 0.00 0.00 1.82
1059 1067 0.178975 CTCTCCTCCTACCCTCGCAT 60.179 60.000 0.00 0.00 0.00 4.73
1105 1113 2.283529 ACGGGAGCTTGTCGACCAT 61.284 57.895 14.12 0.00 0.00 3.55
1453 1604 1.138883 GGTAGATCGTGCGCAGACA 59.861 57.895 12.22 0.00 0.00 3.41
1566 2141 9.912634 ACAAATTTTCTGTTGTCGATTCATATT 57.087 25.926 0.00 0.00 32.52 1.28
1755 2330 5.901552 TCTGCTGATCAATTATCGTACACA 58.098 37.500 0.00 0.00 37.42 3.72
1765 2340 1.542492 ATCGTACACACCTTCGACCT 58.458 50.000 0.00 0.00 35.24 3.85
1786 2361 2.447379 ATGATCGCCTGCCCTCCT 60.447 61.111 0.00 0.00 0.00 3.69
1804 2379 2.813754 TCCTGCCACTTTGAATTCTTCG 59.186 45.455 7.05 0.00 0.00 3.79
1907 2485 5.738619 TCTATCCTTGTGCACAGAAGTTA 57.261 39.130 20.59 10.62 30.52 2.24
2306 3825 2.917701 TTGTTAATCGCAGTGGCATG 57.082 45.000 0.00 0.00 41.24 4.06
2386 3913 0.103208 GGAGATGTCGTCCGCTTCAT 59.897 55.000 0.00 0.00 0.00 2.57
2391 3918 1.107945 TGTCGTCCGCTTCATATCCA 58.892 50.000 0.00 0.00 0.00 3.41
2773 4301 6.647895 AGATGTGTTTCTGGAAATTTTGATGC 59.352 34.615 0.00 0.00 32.36 3.91
3195 5264 8.575649 AATTCAAGTTCTTTCGTATGGGTTAT 57.424 30.769 0.00 0.00 0.00 1.89
3204 5273 8.271312 TCTTTCGTATGGGTTATGTAAAAAGG 57.729 34.615 0.00 0.00 0.00 3.11
3268 5337 4.905456 TCTACCTGGTTCTCTTCCTTTCAA 59.095 41.667 3.84 0.00 0.00 2.69
3270 5339 4.867086 ACCTGGTTCTCTTCCTTTCAAAA 58.133 39.130 0.00 0.00 0.00 2.44
3274 5343 5.600696 TGGTTCTCTTCCTTTCAAAAATGC 58.399 37.500 0.00 0.00 0.00 3.56
3349 5418 5.706916 AGCACAAACTCATGATTGATCAAC 58.293 37.500 11.07 5.73 40.69 3.18
3613 5764 3.159213 AGGGACATTTCAGAACATGCA 57.841 42.857 0.00 0.00 0.00 3.96
3724 5878 3.414549 TTTTTGTTGTCAGACGAAGGC 57.585 42.857 0.00 0.00 0.00 4.35
3800 5958 1.119574 AGTAGTGTGAGGCGGTTGGT 61.120 55.000 0.00 0.00 0.00 3.67
3812 5970 1.604604 CGGTTGGTGGTGTTGAAGAT 58.395 50.000 0.00 0.00 0.00 2.40
4200 6359 1.336517 ACCACGGTCATAAGTGTCACG 60.337 52.381 0.00 0.00 36.69 4.35
4271 6433 9.653287 CTAGGACTTACAAAAACATGTCATCTA 57.347 33.333 0.00 0.00 34.75 1.98
4331 6493 7.483691 GTCATTTGTTGAACGGTTATAATGACC 59.516 37.037 20.74 0.00 41.99 4.02
4554 6719 7.231722 TCCCTTGAGAGATGCTAAAGTACTATC 59.768 40.741 0.00 0.00 33.75 2.08
4647 6813 0.400525 ATGTCGGGGAGGTGATGGAT 60.401 55.000 0.00 0.00 0.00 3.41
4677 6843 2.613977 CGAGGAACTTGTGAAGGCTGAT 60.614 50.000 0.00 0.00 41.55 2.90
4698 6864 0.182299 GCATGGAGAAGAAGGGGAGG 59.818 60.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.607713 TGGTTTATTATCTCCTAGTGTTTGGAA 58.392 33.333 0.00 0.00 31.23 3.53
46 47 5.665381 GCTGGAGCAGTATCTATGAAAAC 57.335 43.478 0.00 0.00 41.59 2.43
86 87 6.765036 CACTGGAATCTGCTTATTATCAGTGT 59.235 38.462 22.09 6.52 40.99 3.55
149 150 4.690748 CACGCTTCTTAGAATGGAGTTGAA 59.309 41.667 0.00 0.00 0.00 2.69
258 259 9.160496 AGTGCAGAAATTCTTCTATCTGTTAAG 57.840 33.333 0.00 0.00 40.05 1.85
263 264 5.879223 ACCAGTGCAGAAATTCTTCTATCTG 59.121 40.000 0.00 0.39 40.05 2.90
264 265 6.059787 ACCAGTGCAGAAATTCTTCTATCT 57.940 37.500 0.00 0.00 40.05 1.98
274 275 3.895232 AGACGATACCAGTGCAGAAAT 57.105 42.857 0.00 0.00 0.00 2.17
277 278 3.551846 TCATAGACGATACCAGTGCAGA 58.448 45.455 0.00 0.00 0.00 4.26
280 281 2.885266 TCCTCATAGACGATACCAGTGC 59.115 50.000 0.00 0.00 0.00 4.40
283 284 5.776173 ACTTTCCTCATAGACGATACCAG 57.224 43.478 0.00 0.00 0.00 4.00
287 288 7.573283 CGCAAGATACTTTCCTCATAGACGATA 60.573 40.741 0.00 0.00 43.02 2.92
293 294 4.039245 TCCCGCAAGATACTTTCCTCATAG 59.961 45.833 0.00 0.00 43.02 2.23
295 296 2.771943 TCCCGCAAGATACTTTCCTCAT 59.228 45.455 0.00 0.00 43.02 2.90
296 297 2.184533 TCCCGCAAGATACTTTCCTCA 58.815 47.619 0.00 0.00 43.02 3.86
304 305 4.390297 GCATAGAGAATTCCCGCAAGATAC 59.610 45.833 0.65 0.00 43.02 2.24
483 484 4.253685 GCAGCTCAGGATACAAAACTACA 58.746 43.478 0.00 0.00 41.41 2.74
493 494 2.113807 ACACTCATGCAGCTCAGGATA 58.886 47.619 0.00 0.00 34.70 2.59
496 497 1.206610 ACTACACTCATGCAGCTCAGG 59.793 52.381 0.00 0.00 0.00 3.86
515 516 8.992835 TCAGTAATGTGCATGATATGAGATAC 57.007 34.615 0.00 0.00 0.00 2.24
620 621 3.858812 CCAAATCAACACAATATGGCACG 59.141 43.478 0.00 0.00 0.00 5.34
677 678 8.514594 CAAGTCAGATAATAGGAAAGCAACAAA 58.485 33.333 0.00 0.00 0.00 2.83
678 679 7.121168 CCAAGTCAGATAATAGGAAAGCAACAA 59.879 37.037 0.00 0.00 0.00 2.83
710 711 7.814107 CCAAATCAACACACTAACATTGCTATT 59.186 33.333 0.00 0.00 0.00 1.73
720 721 4.736168 GCTTGCACCAAATCAACACACTAA 60.736 41.667 0.00 0.00 0.00 2.24
741 742 4.815533 TGTCTTCTTATCTTCAGCAGCT 57.184 40.909 0.00 0.00 0.00 4.24
795 796 9.984590 TTACCTGGCCTAGATTTATTAAAAACT 57.015 29.630 3.32 0.00 32.94 2.66
882 883 1.394917 CGCAGACTATTCACCAACTGC 59.605 52.381 0.00 0.00 44.48 4.40
883 884 1.394917 GCGCAGACTATTCACCAACTG 59.605 52.381 0.30 0.00 0.00 3.16
885 886 0.370273 CGCGCAGACTATTCACCAAC 59.630 55.000 8.75 0.00 0.00 3.77
970 975 2.623878 TTGAGGGTTGCGAGTTAACA 57.376 45.000 8.61 0.00 0.00 2.41
993 998 4.612412 GGTTCGTGCGTGGGGTGA 62.612 66.667 0.00 0.00 0.00 4.02
1059 1067 4.451150 CGCAGGAACCCTAGCGCA 62.451 66.667 11.47 0.00 41.28 6.09
1082 1090 2.426023 GACAAGCTCCCGTGTGGT 59.574 61.111 0.00 0.00 33.76 4.16
1453 1604 1.267121 ATCGGCGGGCTCTAATACAT 58.733 50.000 7.21 0.00 0.00 2.29
1755 2330 1.135139 CGATCATGTCAGGTCGAAGGT 59.865 52.381 0.00 0.00 36.25 3.50
1765 2340 2.190313 GGGCAGGCGATCATGTCA 59.810 61.111 0.00 0.00 0.00 3.58
1804 2379 7.452880 TCCTAAATTTAGCCATCATATGTGC 57.547 36.000 18.18 4.72 0.00 4.57
1907 2485 4.081309 CAGGATTTCAGAAAACCATGGCAT 60.081 41.667 21.06 0.00 0.00 4.40
1965 2545 1.348696 ACGGTACAAATCGGGGTTCTT 59.651 47.619 0.00 0.00 0.00 2.52
2306 3825 4.194640 AGTATTCATCACCTGCACATCAC 58.805 43.478 0.00 0.00 0.00 3.06
2386 3913 3.476552 GATTCCTGGCGTCATTTGGATA 58.523 45.455 0.00 0.00 0.00 2.59
2391 3918 1.066143 ACTCGATTCCTGGCGTCATTT 60.066 47.619 0.00 0.00 0.00 2.32
3034 4578 2.825532 CCAAAAATCCATTCGGTCCTGT 59.174 45.455 0.00 0.00 0.00 4.00
3090 4636 3.285484 GAGTAGACCACCAATACCGAGA 58.715 50.000 0.00 0.00 0.00 4.04
3168 5237 7.989416 ACCCATACGAAAGAACTTGAATTAA 57.011 32.000 0.00 0.00 0.00 1.40
3195 5264 8.785329 AAAAGAAGCAACATTTCCTTTTTACA 57.215 26.923 0.00 0.00 0.00 2.41
3274 5343 6.360414 CACACTGTACACTGCACATTAAAATG 59.640 38.462 0.00 1.13 42.10 2.32
3483 5555 4.755266 ACCGGAAACTACATAGCATTCT 57.245 40.909 9.46 0.00 0.00 2.40
3604 5755 8.957466 CATGATCTTATTCCATATGCATGTTCT 58.043 33.333 10.16 0.00 0.00 3.01
3745 5900 2.345244 CACCGCTGCTCACCTTCT 59.655 61.111 0.00 0.00 0.00 2.85
3800 5958 3.054875 CCCTCTCATCATCTTCAACACCA 60.055 47.826 0.00 0.00 0.00 4.17
3812 5970 3.002583 TGTGCGGCCCTCTCATCA 61.003 61.111 0.00 0.00 0.00 3.07
3937 6096 8.592529 TGCAGATTAGAGAGCTATAGATTCAT 57.407 34.615 3.21 0.00 0.00 2.57
4200 6359 3.674997 TGACATGTCCTAAGTTGGAAGC 58.325 45.455 22.85 0.00 37.93 3.86
4331 6493 8.561738 TTAGCATAGACTTACCCAAAGAAAAG 57.438 34.615 0.00 0.00 38.67 2.27
4522 6687 4.379302 AGCATCTCTCAAGGGAAGTTTT 57.621 40.909 0.00 0.00 0.00 2.43
4647 6813 5.970317 TCACAAGTTCCTCGTCATACTTA 57.030 39.130 0.00 0.00 30.19 2.24
4677 6843 0.549902 TCCCCTTCTTCTCCATGCCA 60.550 55.000 0.00 0.00 0.00 4.92
4698 6864 1.946745 CCTTCTCCTTCGCCAAGATC 58.053 55.000 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.