Multiple sequence alignment - TraesCS2B01G510400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G510400 chr2B 100.000 2192 0 0 1 2192 706419411 706417220 0.000000e+00 4048
1 TraesCS2B01G510400 chr2B 86.067 1256 173 2 929 2183 57664553 57665807 0.000000e+00 1349
2 TraesCS2B01G510400 chr2B 84.755 1266 187 6 929 2192 57672606 57673867 0.000000e+00 1264
3 TraesCS2B01G510400 chr2B 83.402 1211 179 13 963 2158 425353460 425352257 0.000000e+00 1103
4 TraesCS2B01G510400 chr2A 94.274 1729 85 11 470 2192 719541740 719540020 0.000000e+00 2632
5 TraesCS2B01G510400 chr2A 86.158 1257 170 4 929 2183 38309323 38310577 0.000000e+00 1354
6 TraesCS2B01G510400 chr2A 82.812 1280 192 24 898 2158 478762879 478761609 0.000000e+00 1120
7 TraesCS2B01G510400 chr2A 93.381 423 25 3 54 475 719549822 719549402 6.650000e-175 623
8 TraesCS2B01G510400 chr2D 88.024 1812 179 22 390 2191 585477671 585475888 0.000000e+00 2109
9 TraesCS2B01G510400 chr2D 87.706 1334 151 10 855 2183 585517487 585516162 0.000000e+00 1543
10 TraesCS2B01G510400 chr2D 85.308 1266 180 6 929 2192 34994803 34996064 0.000000e+00 1303
11 TraesCS2B01G510400 chr6A 86.478 318 41 2 61 377 500499079 500499395 4.480000e-92 348
12 TraesCS2B01G510400 chr4A 85.535 318 44 2 55 371 740071253 740070937 4.510000e-87 331
13 TraesCS2B01G510400 chr7D 83.939 330 47 4 59 387 424547275 424546951 5.880000e-81 311
14 TraesCS2B01G510400 chr7D 82.166 314 42 13 59 369 7368836 7368534 7.760000e-65 257
15 TraesCS2B01G510400 chr5A 83.851 322 47 5 60 378 69384520 69384839 3.540000e-78 302
16 TraesCS2B01G510400 chr5A 81.651 327 55 5 55 379 69529792 69530115 1.290000e-67 267
17 TraesCS2B01G510400 chr7B 82.371 329 49 9 59 384 460619545 460619223 5.960000e-71 278
18 TraesCS2B01G510400 chr7A 80.723 332 50 12 55 383 8330999 8330679 1.680000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G510400 chr2B 706417220 706419411 2191 True 4048 4048 100.000 1 2192 1 chr2B.!!$R2 2191
1 TraesCS2B01G510400 chr2B 57664553 57665807 1254 False 1349 1349 86.067 929 2183 1 chr2B.!!$F1 1254
2 TraesCS2B01G510400 chr2B 57672606 57673867 1261 False 1264 1264 84.755 929 2192 1 chr2B.!!$F2 1263
3 TraesCS2B01G510400 chr2B 425352257 425353460 1203 True 1103 1103 83.402 963 2158 1 chr2B.!!$R1 1195
4 TraesCS2B01G510400 chr2A 719540020 719541740 1720 True 2632 2632 94.274 470 2192 1 chr2A.!!$R2 1722
5 TraesCS2B01G510400 chr2A 38309323 38310577 1254 False 1354 1354 86.158 929 2183 1 chr2A.!!$F1 1254
6 TraesCS2B01G510400 chr2A 478761609 478762879 1270 True 1120 1120 82.812 898 2158 1 chr2A.!!$R1 1260
7 TraesCS2B01G510400 chr2D 585475888 585477671 1783 True 2109 2109 88.024 390 2191 1 chr2D.!!$R1 1801
8 TraesCS2B01G510400 chr2D 585516162 585517487 1325 True 1543 1543 87.706 855 2183 1 chr2D.!!$R2 1328
9 TraesCS2B01G510400 chr2D 34994803 34996064 1261 False 1303 1303 85.308 929 2192 1 chr2D.!!$F1 1263

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.028642 ATGCCCCCTGGGTCTATTCT 60.029 55.0 12.71 0.0 46.51 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 1317 0.033781 TGCTGCCACAAAATTGCCTC 59.966 50.0 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.969260 AGTCATGAATATAGCAATTCAGTCAA 57.031 30.769 0.00 0.08 46.18 3.18
29 30 9.570468 AGTCATGAATATAGCAATTCAGTCAAT 57.430 29.630 0.00 0.00 46.18 2.57
38 39 4.261578 CAATTCAGTCAATTGCCCAACT 57.738 40.909 0.00 0.00 43.87 3.16
39 40 4.634199 CAATTCAGTCAATTGCCCAACTT 58.366 39.130 0.00 0.00 43.87 2.66
40 41 4.525912 ATTCAGTCAATTGCCCAACTTC 57.474 40.909 0.00 0.00 0.00 3.01
41 42 2.942804 TCAGTCAATTGCCCAACTTCA 58.057 42.857 0.00 0.00 0.00 3.02
42 43 3.295093 TCAGTCAATTGCCCAACTTCAA 58.705 40.909 0.00 0.00 0.00 2.69
43 44 3.896888 TCAGTCAATTGCCCAACTTCAAT 59.103 39.130 0.00 0.00 34.66 2.57
44 45 4.344679 TCAGTCAATTGCCCAACTTCAATT 59.655 37.500 0.00 0.00 41.88 2.32
45 46 5.058490 CAGTCAATTGCCCAACTTCAATTT 58.942 37.500 0.00 0.00 39.92 1.82
46 47 5.049954 CAGTCAATTGCCCAACTTCAATTTG 60.050 40.000 0.00 0.00 39.92 2.32
47 48 4.815846 GTCAATTGCCCAACTTCAATTTGT 59.184 37.500 0.00 0.00 39.92 2.83
48 49 5.296531 GTCAATTGCCCAACTTCAATTTGTT 59.703 36.000 0.00 0.00 39.92 2.83
49 50 5.884792 TCAATTGCCCAACTTCAATTTGTTT 59.115 32.000 0.00 0.00 39.92 2.83
50 51 7.011857 GTCAATTGCCCAACTTCAATTTGTTTA 59.988 33.333 0.00 0.00 39.92 2.01
51 52 6.859420 ATTGCCCAACTTCAATTTGTTTAC 57.141 33.333 0.00 0.00 29.34 2.01
52 53 4.698575 TGCCCAACTTCAATTTGTTTACC 58.301 39.130 0.00 0.00 0.00 2.85
53 54 3.738791 GCCCAACTTCAATTTGTTTACCG 59.261 43.478 0.00 0.00 0.00 4.02
54 55 4.738243 GCCCAACTTCAATTTGTTTACCGT 60.738 41.667 0.00 0.00 0.00 4.83
55 56 4.742659 CCCAACTTCAATTTGTTTACCGTG 59.257 41.667 0.00 0.00 0.00 4.94
56 57 4.208253 CCAACTTCAATTTGTTTACCGTGC 59.792 41.667 0.00 0.00 0.00 5.34
57 58 4.911514 ACTTCAATTTGTTTACCGTGCT 57.088 36.364 0.00 0.00 0.00 4.40
58 59 6.202937 CAACTTCAATTTGTTTACCGTGCTA 58.797 36.000 0.00 0.00 0.00 3.49
59 60 5.754778 ACTTCAATTTGTTTACCGTGCTAC 58.245 37.500 0.00 0.00 0.00 3.58
60 61 5.529800 ACTTCAATTTGTTTACCGTGCTACT 59.470 36.000 0.00 0.00 0.00 2.57
61 62 6.707161 ACTTCAATTTGTTTACCGTGCTACTA 59.293 34.615 0.00 0.00 0.00 1.82
62 63 6.715344 TCAATTTGTTTACCGTGCTACTAG 57.285 37.500 0.00 0.00 0.00 2.57
63 64 6.225318 TCAATTTGTTTACCGTGCTACTAGT 58.775 36.000 0.00 0.00 0.00 2.57
64 65 6.146510 TCAATTTGTTTACCGTGCTACTAGTG 59.853 38.462 5.39 0.00 0.00 2.74
65 66 4.852134 TTGTTTACCGTGCTACTAGTGA 57.148 40.909 5.39 0.00 0.00 3.41
66 67 4.852134 TGTTTACCGTGCTACTAGTGAA 57.148 40.909 5.39 0.00 0.00 3.18
67 68 4.549458 TGTTTACCGTGCTACTAGTGAAC 58.451 43.478 5.39 0.00 31.48 3.18
68 69 3.855689 TTACCGTGCTACTAGTGAACC 57.144 47.619 5.39 0.00 0.00 3.62
69 70 1.920610 ACCGTGCTACTAGTGAACCT 58.079 50.000 5.39 0.00 0.00 3.50
70 71 3.077484 ACCGTGCTACTAGTGAACCTA 57.923 47.619 5.39 0.00 0.00 3.08
71 72 3.629087 ACCGTGCTACTAGTGAACCTAT 58.371 45.455 5.39 0.00 0.00 2.57
72 73 3.380637 ACCGTGCTACTAGTGAACCTATG 59.619 47.826 5.39 0.00 0.00 2.23
73 74 3.372954 CGTGCTACTAGTGAACCTATGC 58.627 50.000 5.39 0.00 0.00 3.14
74 75 3.718815 GTGCTACTAGTGAACCTATGCC 58.281 50.000 5.39 0.00 0.00 4.40
75 76 2.698797 TGCTACTAGTGAACCTATGCCC 59.301 50.000 5.39 0.00 0.00 5.36
76 77 2.037381 GCTACTAGTGAACCTATGCCCC 59.963 54.545 5.39 0.00 0.00 5.80
77 78 1.508256 ACTAGTGAACCTATGCCCCC 58.492 55.000 0.00 0.00 0.00 5.40
78 79 1.009675 ACTAGTGAACCTATGCCCCCT 59.990 52.381 0.00 0.00 0.00 4.79
79 80 1.417890 CTAGTGAACCTATGCCCCCTG 59.582 57.143 0.00 0.00 0.00 4.45
80 81 1.227383 GTGAACCTATGCCCCCTGG 59.773 63.158 0.00 0.00 0.00 4.45
82 83 2.006991 GAACCTATGCCCCCTGGGT 61.007 63.158 12.71 0.00 46.51 4.51
83 84 1.996070 GAACCTATGCCCCCTGGGTC 61.996 65.000 12.71 3.54 46.51 4.46
84 85 2.039405 CCTATGCCCCCTGGGTCT 60.039 66.667 12.71 0.00 46.51 3.85
85 86 1.238938 CCTATGCCCCCTGGGTCTA 59.761 63.158 12.71 0.00 46.51 2.59
86 87 0.178861 CCTATGCCCCCTGGGTCTAT 60.179 60.000 12.71 5.12 46.51 1.98
87 88 1.747444 CTATGCCCCCTGGGTCTATT 58.253 55.000 12.71 0.00 46.51 1.73
88 89 1.630878 CTATGCCCCCTGGGTCTATTC 59.369 57.143 12.71 0.00 46.51 1.75
89 90 0.028642 ATGCCCCCTGGGTCTATTCT 60.029 55.000 12.71 0.00 46.51 2.40
90 91 0.694444 TGCCCCCTGGGTCTATTCTC 60.694 60.000 12.71 0.00 46.51 2.87
91 92 1.419720 GCCCCCTGGGTCTATTCTCC 61.420 65.000 12.71 0.00 46.51 3.71
92 93 0.030092 CCCCCTGGGTCTATTCTCCA 60.030 60.000 12.71 0.00 38.25 3.86
93 94 1.416608 CCCCCTGGGTCTATTCTCCAT 60.417 57.143 12.71 0.00 38.25 3.41
94 95 2.422746 CCCCTGGGTCTATTCTCCATT 58.577 52.381 12.71 0.00 0.00 3.16
95 96 3.598264 CCCCTGGGTCTATTCTCCATTA 58.402 50.000 12.71 0.00 0.00 1.90
96 97 3.980698 CCCCTGGGTCTATTCTCCATTAA 59.019 47.826 12.71 0.00 0.00 1.40
97 98 4.603610 CCCCTGGGTCTATTCTCCATTAAT 59.396 45.833 12.71 0.00 0.00 1.40
98 99 5.790618 CCCCTGGGTCTATTCTCCATTAATA 59.209 44.000 12.71 0.00 0.00 0.98
99 100 6.274672 CCCCTGGGTCTATTCTCCATTAATAA 59.725 42.308 12.71 0.00 0.00 1.40
100 101 7.202279 CCCCTGGGTCTATTCTCCATTAATAAA 60.202 40.741 12.71 0.00 0.00 1.40
101 102 8.394040 CCCTGGGTCTATTCTCCATTAATAAAT 58.606 37.037 3.97 0.00 0.00 1.40
102 103 9.813826 CCTGGGTCTATTCTCCATTAATAAATT 57.186 33.333 0.00 0.00 0.00 1.82
112 113 8.725405 TCTCCATTAATAAATTCTTGTACGCA 57.275 30.769 0.00 0.00 0.00 5.24
113 114 9.168451 TCTCCATTAATAAATTCTTGTACGCAA 57.832 29.630 0.00 0.00 0.00 4.85
114 115 9.950680 CTCCATTAATAAATTCTTGTACGCAAT 57.049 29.630 0.00 0.00 33.65 3.56
124 125 9.744468 AAATTCTTGTACGCAATTTACTCTTTT 57.256 25.926 7.20 0.00 33.65 2.27
125 126 9.744468 AATTCTTGTACGCAATTTACTCTTTTT 57.256 25.926 0.00 0.00 33.65 1.94
131 132 9.615295 TGTACGCAATTTACTCTTTTTATTTCC 57.385 29.630 0.00 0.00 0.00 3.13
132 133 9.069078 GTACGCAATTTACTCTTTTTATTTCCC 57.931 33.333 0.00 0.00 0.00 3.97
133 134 6.804783 ACGCAATTTACTCTTTTTATTTCCCG 59.195 34.615 0.00 0.00 0.00 5.14
134 135 6.804783 CGCAATTTACTCTTTTTATTTCCCGT 59.195 34.615 0.00 0.00 0.00 5.28
135 136 7.201316 CGCAATTTACTCTTTTTATTTCCCGTG 60.201 37.037 0.00 0.00 0.00 4.94
136 137 7.411480 GCAATTTACTCTTTTTATTTCCCGTGC 60.411 37.037 0.00 0.00 0.00 5.34
137 138 6.887626 TTTACTCTTTTTATTTCCCGTGCT 57.112 33.333 0.00 0.00 0.00 4.40
138 139 7.982761 TTTACTCTTTTTATTTCCCGTGCTA 57.017 32.000 0.00 0.00 0.00 3.49
139 140 8.570068 TTTACTCTTTTTATTTCCCGTGCTAT 57.430 30.769 0.00 0.00 0.00 2.97
140 141 8.570068 TTACTCTTTTTATTTCCCGTGCTATT 57.430 30.769 0.00 0.00 0.00 1.73
141 142 7.462571 ACTCTTTTTATTTCCCGTGCTATTT 57.537 32.000 0.00 0.00 0.00 1.40
142 143 7.892609 ACTCTTTTTATTTCCCGTGCTATTTT 58.107 30.769 0.00 0.00 0.00 1.82
143 144 9.016438 ACTCTTTTTATTTCCCGTGCTATTTTA 57.984 29.630 0.00 0.00 0.00 1.52
144 145 9.285770 CTCTTTTTATTTCCCGTGCTATTTTAC 57.714 33.333 0.00 0.00 0.00 2.01
145 146 8.245491 TCTTTTTATTTCCCGTGCTATTTTACC 58.755 33.333 0.00 0.00 0.00 2.85
146 147 7.463961 TTTTATTTCCCGTGCTATTTTACCA 57.536 32.000 0.00 0.00 0.00 3.25
147 148 4.976224 ATTTCCCGTGCTATTTTACCAC 57.024 40.909 0.00 0.00 0.00 4.16
148 149 3.706600 TTCCCGTGCTATTTTACCACT 57.293 42.857 0.00 0.00 0.00 4.00
149 150 4.822685 TTCCCGTGCTATTTTACCACTA 57.177 40.909 0.00 0.00 0.00 2.74
150 151 5.362105 TTCCCGTGCTATTTTACCACTAT 57.638 39.130 0.00 0.00 0.00 2.12
151 152 4.952460 TCCCGTGCTATTTTACCACTATC 58.048 43.478 0.00 0.00 0.00 2.08
152 153 4.652421 TCCCGTGCTATTTTACCACTATCT 59.348 41.667 0.00 0.00 0.00 1.98
153 154 5.834742 TCCCGTGCTATTTTACCACTATCTA 59.165 40.000 0.00 0.00 0.00 1.98
154 155 6.495872 TCCCGTGCTATTTTACCACTATCTAT 59.504 38.462 0.00 0.00 0.00 1.98
155 156 6.812160 CCCGTGCTATTTTACCACTATCTATC 59.188 42.308 0.00 0.00 0.00 2.08
156 157 7.309867 CCCGTGCTATTTTACCACTATCTATCT 60.310 40.741 0.00 0.00 0.00 1.98
157 158 7.755822 CCGTGCTATTTTACCACTATCTATCTC 59.244 40.741 0.00 0.00 0.00 2.75
158 159 8.516234 CGTGCTATTTTACCACTATCTATCTCT 58.484 37.037 0.00 0.00 0.00 3.10
195 196 9.651913 TTTAATCTTTTAATTAGCAAGGCAAGG 57.348 29.630 6.63 0.00 0.00 3.61
196 197 5.659440 TCTTTTAATTAGCAAGGCAAGGG 57.341 39.130 6.63 0.00 0.00 3.95
197 198 4.466015 TCTTTTAATTAGCAAGGCAAGGGG 59.534 41.667 6.63 0.00 0.00 4.79
198 199 1.775385 TAATTAGCAAGGCAAGGGGC 58.225 50.000 0.00 0.00 43.74 5.80
207 208 3.051210 GCAAGGGGCTTGACAACC 58.949 61.111 0.00 0.00 43.42 3.77
208 209 2.574018 GCAAGGGGCTTGACAACCC 61.574 63.158 14.24 14.24 43.42 4.11
211 212 3.171348 GGGGCTTGACAACCCTCT 58.829 61.111 19.17 0.00 46.19 3.69
212 213 1.460699 GGGGCTTGACAACCCTCTT 59.539 57.895 19.17 0.00 46.19 2.85
213 214 0.895559 GGGGCTTGACAACCCTCTTG 60.896 60.000 19.17 0.00 46.19 3.02
214 215 1.527433 GGGCTTGACAACCCTCTTGC 61.527 60.000 14.96 2.58 43.36 4.01
215 216 1.527433 GGCTTGACAACCCTCTTGCC 61.527 60.000 0.00 0.00 0.00 4.52
216 217 0.823356 GCTTGACAACCCTCTTGCCA 60.823 55.000 0.00 0.00 0.00 4.92
217 218 1.915141 CTTGACAACCCTCTTGCCAT 58.085 50.000 0.00 0.00 0.00 4.40
218 219 1.542915 CTTGACAACCCTCTTGCCATG 59.457 52.381 0.00 0.00 0.00 3.66
219 220 0.478072 TGACAACCCTCTTGCCATGT 59.522 50.000 0.00 0.00 0.00 3.21
220 221 1.133513 TGACAACCCTCTTGCCATGTT 60.134 47.619 0.00 0.00 0.00 2.71
221 222 1.270550 GACAACCCTCTTGCCATGTTG 59.729 52.381 0.00 0.00 41.47 3.33
222 223 0.604578 CAACCCTCTTGCCATGTTGG 59.395 55.000 0.00 0.00 41.55 3.77
223 224 0.542702 AACCCTCTTGCCATGTTGGG 60.543 55.000 0.00 0.00 38.19 4.12
224 225 1.077265 CCCTCTTGCCATGTTGGGT 59.923 57.895 0.00 0.00 38.19 4.51
225 226 1.252904 CCCTCTTGCCATGTTGGGTG 61.253 60.000 0.00 0.00 38.19 4.61
226 227 1.588082 CTCTTGCCATGTTGGGTGC 59.412 57.895 0.00 0.00 38.19 5.01
227 228 1.152589 TCTTGCCATGTTGGGTGCA 60.153 52.632 0.00 0.00 38.19 4.57
228 229 0.758310 TCTTGCCATGTTGGGTGCAA 60.758 50.000 4.99 4.99 41.08 4.08
229 230 1.747145 TTGCCATGTTGGGTGCAAG 59.253 52.632 0.00 0.00 38.68 4.01
230 231 1.047596 TTGCCATGTTGGGTGCAAGT 61.048 50.000 0.00 0.00 38.68 3.16
231 232 1.047596 TGCCATGTTGGGTGCAAGTT 61.048 50.000 0.00 0.00 38.19 2.66
232 233 0.106521 GCCATGTTGGGTGCAAGTTT 59.893 50.000 0.00 0.00 38.19 2.66
233 234 1.868469 CCATGTTGGGTGCAAGTTTG 58.132 50.000 0.00 0.00 32.67 2.93
234 235 1.138661 CCATGTTGGGTGCAAGTTTGT 59.861 47.619 0.00 0.00 32.67 2.83
235 236 2.363680 CCATGTTGGGTGCAAGTTTGTA 59.636 45.455 0.00 0.00 32.67 2.41
236 237 3.006752 CCATGTTGGGTGCAAGTTTGTAT 59.993 43.478 0.00 0.00 32.67 2.29
237 238 4.236935 CATGTTGGGTGCAAGTTTGTATC 58.763 43.478 0.00 0.00 0.00 2.24
238 239 3.561143 TGTTGGGTGCAAGTTTGTATCT 58.439 40.909 0.00 0.00 0.00 1.98
239 240 3.957497 TGTTGGGTGCAAGTTTGTATCTT 59.043 39.130 0.00 0.00 0.00 2.40
240 241 4.202101 TGTTGGGTGCAAGTTTGTATCTTG 60.202 41.667 0.00 0.00 43.31 3.02
241 242 3.561143 TGGGTGCAAGTTTGTATCTTGT 58.439 40.909 0.00 0.00 42.67 3.16
242 243 3.957497 TGGGTGCAAGTTTGTATCTTGTT 59.043 39.130 0.00 0.00 42.67 2.83
243 244 4.404073 TGGGTGCAAGTTTGTATCTTGTTT 59.596 37.500 0.00 0.00 42.67 2.83
244 245 4.744631 GGGTGCAAGTTTGTATCTTGTTTG 59.255 41.667 0.00 0.00 42.67 2.93
245 246 5.348164 GGTGCAAGTTTGTATCTTGTTTGT 58.652 37.500 0.00 0.00 42.67 2.83
246 247 5.231991 GGTGCAAGTTTGTATCTTGTTTGTG 59.768 40.000 0.00 0.00 42.67 3.33
247 248 5.804979 GTGCAAGTTTGTATCTTGTTTGTGT 59.195 36.000 0.00 0.00 42.67 3.72
248 249 5.804473 TGCAAGTTTGTATCTTGTTTGTGTG 59.196 36.000 7.35 0.00 42.67 3.82
249 250 5.804979 GCAAGTTTGTATCTTGTTTGTGTGT 59.195 36.000 7.35 0.00 42.67 3.72
250 251 6.970043 GCAAGTTTGTATCTTGTTTGTGTGTA 59.030 34.615 7.35 0.00 42.67 2.90
251 252 7.165812 GCAAGTTTGTATCTTGTTTGTGTGTAG 59.834 37.037 7.35 0.00 42.67 2.74
252 253 7.259290 AGTTTGTATCTTGTTTGTGTGTAGG 57.741 36.000 0.00 0.00 0.00 3.18
253 254 6.826741 AGTTTGTATCTTGTTTGTGTGTAGGT 59.173 34.615 0.00 0.00 0.00 3.08
254 255 6.612247 TTGTATCTTGTTTGTGTGTAGGTG 57.388 37.500 0.00 0.00 0.00 4.00
255 256 5.676552 TGTATCTTGTTTGTGTGTAGGTGT 58.323 37.500 0.00 0.00 0.00 4.16
256 257 5.525745 TGTATCTTGTTTGTGTGTAGGTGTG 59.474 40.000 0.00 0.00 0.00 3.82
257 258 3.945346 TCTTGTTTGTGTGTAGGTGTGT 58.055 40.909 0.00 0.00 0.00 3.72
258 259 4.328536 TCTTGTTTGTGTGTAGGTGTGTT 58.671 39.130 0.00 0.00 0.00 3.32
259 260 4.762765 TCTTGTTTGTGTGTAGGTGTGTTT 59.237 37.500 0.00 0.00 0.00 2.83
260 261 5.938710 TCTTGTTTGTGTGTAGGTGTGTTTA 59.061 36.000 0.00 0.00 0.00 2.01
261 262 6.600032 TCTTGTTTGTGTGTAGGTGTGTTTAT 59.400 34.615 0.00 0.00 0.00 1.40
262 263 7.769507 TCTTGTTTGTGTGTAGGTGTGTTTATA 59.230 33.333 0.00 0.00 0.00 0.98
263 264 8.453238 TTGTTTGTGTGTAGGTGTGTTTATAT 57.547 30.769 0.00 0.00 0.00 0.86
264 265 8.453238 TGTTTGTGTGTAGGTGTGTTTATATT 57.547 30.769 0.00 0.00 0.00 1.28
265 266 8.346300 TGTTTGTGTGTAGGTGTGTTTATATTG 58.654 33.333 0.00 0.00 0.00 1.90
266 267 8.347035 GTTTGTGTGTAGGTGTGTTTATATTGT 58.653 33.333 0.00 0.00 0.00 2.71
267 268 8.453238 TTGTGTGTAGGTGTGTTTATATTGTT 57.547 30.769 0.00 0.00 0.00 2.83
268 269 9.557061 TTGTGTGTAGGTGTGTTTATATTGTTA 57.443 29.630 0.00 0.00 0.00 2.41
269 270 9.210329 TGTGTGTAGGTGTGTTTATATTGTTAG 57.790 33.333 0.00 0.00 0.00 2.34
270 271 8.173130 GTGTGTAGGTGTGTTTATATTGTTAGC 58.827 37.037 0.00 0.00 0.00 3.09
271 272 7.878644 TGTGTAGGTGTGTTTATATTGTTAGCA 59.121 33.333 0.00 0.00 0.00 3.49
272 273 8.889717 GTGTAGGTGTGTTTATATTGTTAGCAT 58.110 33.333 0.00 0.00 0.00 3.79
273 274 8.888716 TGTAGGTGTGTTTATATTGTTAGCATG 58.111 33.333 0.00 0.00 0.00 4.06
274 275 7.333528 AGGTGTGTTTATATTGTTAGCATGG 57.666 36.000 0.00 0.00 0.00 3.66
275 276 7.116075 AGGTGTGTTTATATTGTTAGCATGGA 58.884 34.615 0.00 0.00 0.00 3.41
276 277 7.613801 AGGTGTGTTTATATTGTTAGCATGGAA 59.386 33.333 0.00 0.00 0.00 3.53
277 278 7.915397 GGTGTGTTTATATTGTTAGCATGGAAG 59.085 37.037 0.00 0.00 0.00 3.46
278 279 7.432252 GTGTGTTTATATTGTTAGCATGGAAGC 59.568 37.037 0.00 0.00 0.00 3.86
280 281 8.190784 GTGTTTATATTGTTAGCATGGAAGCTT 58.809 33.333 0.00 0.00 43.70 3.74
281 282 8.748412 TGTTTATATTGTTAGCATGGAAGCTTT 58.252 29.630 0.00 0.00 43.70 3.51
282 283 9.237846 GTTTATATTGTTAGCATGGAAGCTTTC 57.762 33.333 0.00 0.00 43.70 2.62
283 284 8.752005 TTATATTGTTAGCATGGAAGCTTTCT 57.248 30.769 6.25 0.00 43.70 2.52
284 285 9.845740 TTATATTGTTAGCATGGAAGCTTTCTA 57.154 29.630 6.25 0.00 43.70 2.10
285 286 5.880054 TTGTTAGCATGGAAGCTTTCTAC 57.120 39.130 6.25 0.00 43.70 2.59
286 287 4.905429 TGTTAGCATGGAAGCTTTCTACA 58.095 39.130 6.25 1.55 43.70 2.74
287 288 4.937620 TGTTAGCATGGAAGCTTTCTACAG 59.062 41.667 6.25 0.00 43.70 2.74
288 289 2.996631 AGCATGGAAGCTTTCTACAGG 58.003 47.619 6.25 4.24 43.70 4.00
289 290 2.573462 AGCATGGAAGCTTTCTACAGGA 59.427 45.455 6.25 0.00 43.70 3.86
290 291 3.201708 AGCATGGAAGCTTTCTACAGGAT 59.798 43.478 6.25 0.00 43.70 3.24
291 292 3.950395 GCATGGAAGCTTTCTACAGGATT 59.050 43.478 6.25 0.00 0.00 3.01
292 293 4.201990 GCATGGAAGCTTTCTACAGGATTG 60.202 45.833 6.25 0.00 0.00 2.67
293 294 4.908601 TGGAAGCTTTCTACAGGATTGA 57.091 40.909 6.25 0.00 0.00 2.57
294 295 5.441718 TGGAAGCTTTCTACAGGATTGAT 57.558 39.130 6.25 0.00 0.00 2.57
295 296 6.560003 TGGAAGCTTTCTACAGGATTGATA 57.440 37.500 6.25 0.00 0.00 2.15
296 297 6.957631 TGGAAGCTTTCTACAGGATTGATAA 58.042 36.000 6.25 0.00 0.00 1.75
297 298 6.823689 TGGAAGCTTTCTACAGGATTGATAAC 59.176 38.462 6.25 0.00 0.00 1.89
298 299 6.261158 GGAAGCTTTCTACAGGATTGATAACC 59.739 42.308 0.00 0.00 0.00 2.85
299 300 6.567602 AGCTTTCTACAGGATTGATAACCT 57.432 37.500 0.00 0.00 36.92 3.50
300 301 6.963322 AGCTTTCTACAGGATTGATAACCTT 58.037 36.000 0.00 0.00 33.91 3.50
301 302 7.406104 AGCTTTCTACAGGATTGATAACCTTT 58.594 34.615 0.00 0.00 33.91 3.11
302 303 7.337942 AGCTTTCTACAGGATTGATAACCTTTG 59.662 37.037 0.00 0.00 33.91 2.77
303 304 7.121315 GCTTTCTACAGGATTGATAACCTTTGT 59.879 37.037 0.00 0.00 33.91 2.83
304 305 8.934023 TTTCTACAGGATTGATAACCTTTGTT 57.066 30.769 0.00 0.00 38.52 2.83
305 306 8.561738 TTCTACAGGATTGATAACCTTTGTTC 57.438 34.615 0.00 0.00 35.87 3.18
306 307 7.918076 TCTACAGGATTGATAACCTTTGTTCT 58.082 34.615 0.00 0.00 35.87 3.01
307 308 8.041323 TCTACAGGATTGATAACCTTTGTTCTC 58.959 37.037 0.00 0.00 35.87 2.87
308 309 6.784031 ACAGGATTGATAACCTTTGTTCTCT 58.216 36.000 0.00 0.00 35.87 3.10
309 310 7.918076 ACAGGATTGATAACCTTTGTTCTCTA 58.082 34.615 0.00 0.00 35.87 2.43
310 311 8.383175 ACAGGATTGATAACCTTTGTTCTCTAA 58.617 33.333 0.00 0.00 35.87 2.10
311 312 8.669243 CAGGATTGATAACCTTTGTTCTCTAAC 58.331 37.037 0.00 0.00 35.87 2.34
312 313 7.829706 AGGATTGATAACCTTTGTTCTCTAACC 59.170 37.037 0.00 0.00 35.87 2.85
313 314 7.201617 GGATTGATAACCTTTGTTCTCTAACCG 60.202 40.741 0.00 0.00 35.87 4.44
314 315 6.349243 TGATAACCTTTGTTCTCTAACCGA 57.651 37.500 0.00 0.00 35.87 4.69
315 316 6.761312 TGATAACCTTTGTTCTCTAACCGAA 58.239 36.000 0.00 0.00 35.87 4.30
316 317 6.872020 TGATAACCTTTGTTCTCTAACCGAAG 59.128 38.462 0.00 0.00 35.87 3.79
317 318 5.544650 TAACCTTTGTTCTCTAACCGAAGG 58.455 41.667 14.16 14.16 44.95 3.46
318 319 5.305128 TAACCTTTGTTCTCTAACCGAAGGA 59.695 40.000 19.13 4.09 43.64 3.36
319 320 6.183360 TAACCTTTGTTCTCTAACCGAAGGAA 60.183 38.462 19.13 9.66 43.64 3.36
320 321 7.635529 TAACCTTTGTTCTCTAACCGAAGGAAA 60.636 37.037 19.13 9.44 43.64 3.13
336 337 7.376530 CGAAGGAAATACTTTGTTGTTGTTC 57.623 36.000 0.00 0.00 0.00 3.18
337 338 7.193595 CGAAGGAAATACTTTGTTGTTGTTCT 58.806 34.615 0.00 0.00 0.00 3.01
338 339 8.339714 CGAAGGAAATACTTTGTTGTTGTTCTA 58.660 33.333 0.00 0.00 0.00 2.10
339 340 9.447040 GAAGGAAATACTTTGTTGTTGTTCTAC 57.553 33.333 0.00 0.00 0.00 2.59
340 341 8.514330 AGGAAATACTTTGTTGTTGTTCTACA 57.486 30.769 0.00 0.00 0.00 2.74
341 342 9.131791 AGGAAATACTTTGTTGTTGTTCTACAT 57.868 29.630 0.00 0.00 32.58 2.29
342 343 9.394477 GGAAATACTTTGTTGTTGTTCTACATC 57.606 33.333 0.00 0.00 32.58 3.06
343 344 9.944663 GAAATACTTTGTTGTTGTTCTACATCA 57.055 29.630 0.00 0.00 32.58 3.07
346 347 6.970484 ACTTTGTTGTTGTTCTACATCATCC 58.030 36.000 0.00 0.00 32.58 3.51
347 348 6.772716 ACTTTGTTGTTGTTCTACATCATCCT 59.227 34.615 0.00 0.00 32.58 3.24
348 349 7.285401 ACTTTGTTGTTGTTCTACATCATCCTT 59.715 33.333 0.00 0.00 32.58 3.36
349 350 6.801539 TGTTGTTGTTCTACATCATCCTTC 57.198 37.500 0.00 0.00 29.06 3.46
350 351 5.705441 TGTTGTTGTTCTACATCATCCTTCC 59.295 40.000 0.00 0.00 29.06 3.46
351 352 5.762179 TGTTGTTCTACATCATCCTTCCT 57.238 39.130 0.00 0.00 0.00 3.36
352 353 5.734720 TGTTGTTCTACATCATCCTTCCTC 58.265 41.667 0.00 0.00 0.00 3.71
353 354 5.485353 TGTTGTTCTACATCATCCTTCCTCT 59.515 40.000 0.00 0.00 0.00 3.69
354 355 6.013379 TGTTGTTCTACATCATCCTTCCTCTT 60.013 38.462 0.00 0.00 0.00 2.85
355 356 6.627087 TGTTCTACATCATCCTTCCTCTTT 57.373 37.500 0.00 0.00 0.00 2.52
356 357 6.409704 TGTTCTACATCATCCTTCCTCTTTG 58.590 40.000 0.00 0.00 0.00 2.77
357 358 5.620738 TCTACATCATCCTTCCTCTTTGG 57.379 43.478 0.00 0.00 37.10 3.28
358 359 3.659183 ACATCATCCTTCCTCTTTGGG 57.341 47.619 0.00 0.00 36.20 4.12
359 360 2.243221 ACATCATCCTTCCTCTTTGGGG 59.757 50.000 0.00 0.00 36.20 4.96
360 361 1.298953 TCATCCTTCCTCTTTGGGGG 58.701 55.000 0.00 0.00 36.20 5.40
361 362 1.203557 TCATCCTTCCTCTTTGGGGGA 60.204 52.381 0.00 0.00 40.36 4.81
362 363 1.640670 CATCCTTCCTCTTTGGGGGAA 59.359 52.381 0.00 0.00 39.84 3.97
363 364 1.841334 TCCTTCCTCTTTGGGGGAAA 58.159 50.000 0.00 0.00 40.53 3.13
364 365 1.427753 TCCTTCCTCTTTGGGGGAAAC 59.572 52.381 0.00 0.00 40.53 2.78
380 381 4.801330 GGAAACCCAATAACTCCTTTGG 57.199 45.455 0.00 0.00 41.71 3.28
396 397 3.054361 CCTTTGGGAGGCAACATACTACT 60.054 47.826 0.00 0.00 39.09 2.57
397 398 3.627395 TTGGGAGGCAACATACTACTG 57.373 47.619 0.00 0.00 41.41 2.74
404 405 6.403878 GGAGGCAACATACTACTGTAGAAAA 58.596 40.000 21.01 6.77 41.41 2.29
405 406 6.535508 GGAGGCAACATACTACTGTAGAAAAG 59.464 42.308 21.01 9.97 41.41 2.27
406 407 5.875359 AGGCAACATACTACTGTAGAAAAGC 59.125 40.000 21.01 14.75 41.41 3.51
408 409 6.371825 GGCAACATACTACTGTAGAAAAGCTT 59.628 38.462 21.01 0.00 31.51 3.74
409 410 7.548075 GGCAACATACTACTGTAGAAAAGCTTA 59.452 37.037 21.01 2.08 31.51 3.09
410 411 8.932791 GCAACATACTACTGTAGAAAAGCTTAA 58.067 33.333 21.01 0.00 31.51 1.85
430 431 9.045223 AGCTTAAAATTGCAAGGAAACTAAAAG 57.955 29.630 4.94 0.70 42.68 2.27
434 435 8.785329 AAAATTGCAAGGAAACTAAAAGTTGA 57.215 26.923 4.94 0.00 42.68 3.18
435 436 7.770801 AATTGCAAGGAAACTAAAAGTTGAC 57.229 32.000 4.94 0.00 42.68 3.18
438 439 6.329496 TGCAAGGAAACTAAAAGTTGACAAG 58.671 36.000 0.00 0.00 42.68 3.16
439 440 5.232202 GCAAGGAAACTAAAAGTTGACAAGC 59.768 40.000 0.00 0.00 42.68 4.01
440 441 6.329496 CAAGGAAACTAAAAGTTGACAAGCA 58.671 36.000 0.00 0.00 42.68 3.91
441 442 6.136541 AGGAAACTAAAAGTTGACAAGCAG 57.863 37.500 0.00 0.00 38.66 4.24
442 443 5.652452 AGGAAACTAAAAGTTGACAAGCAGT 59.348 36.000 0.00 0.00 38.66 4.40
443 444 6.183360 AGGAAACTAAAAGTTGACAAGCAGTC 60.183 38.462 2.66 2.66 43.65 3.51
454 455 3.219281 GACAAGCAGTCCCCTTTGTTAA 58.781 45.455 0.00 0.00 41.56 2.01
456 457 3.573967 ACAAGCAGTCCCCTTTGTTAATG 59.426 43.478 0.00 0.00 0.00 1.90
460 461 3.694566 GCAGTCCCCTTTGTTAATGGTAG 59.305 47.826 0.00 0.00 0.00 3.18
476 477 3.381335 TGGTAGTCTATTCAACCCCTCC 58.619 50.000 0.00 0.00 0.00 4.30
503 504 9.601217 AGACTATGTTAAATGATACCACACTTC 57.399 33.333 0.00 0.00 0.00 3.01
578 582 3.784994 GTCGACTCTTTCTTAACGATCCG 59.215 47.826 8.70 0.00 32.78 4.18
605 609 7.461107 AGGTCATTTTAAATTCGTATGTGTCG 58.539 34.615 0.00 0.00 0.00 4.35
606 610 7.118680 AGGTCATTTTAAATTCGTATGTGTCGT 59.881 33.333 0.00 0.00 0.00 4.34
623 627 6.044046 TGTGTCGTATGTATGGTTTGTATCC 58.956 40.000 0.00 0.00 0.00 2.59
683 687 5.523188 GCACCTCTTCTACATGATTCAGAAG 59.477 44.000 17.36 17.36 44.32 2.85
710 714 3.380142 ACACGCAAAAACATCATTGACC 58.620 40.909 0.00 0.00 0.00 4.02
715 719 3.184986 GCAAAAACATCATTGACCTGTGC 59.815 43.478 0.00 0.00 0.00 4.57
747 751 5.240623 ACCACGAGCAAAACATAAATCAAGA 59.759 36.000 0.00 0.00 0.00 3.02
806 813 6.413818 ACGCAAGAAAACAAATTAAGAAGACG 59.586 34.615 0.00 0.00 43.62 4.18
809 816 7.043391 GCAAGAAAACAAATTAAGAAGACGCTT 60.043 33.333 0.00 0.00 0.00 4.68
1157 1169 4.277476 ACAAACAAGATGACAGTCCCAAA 58.723 39.130 0.00 0.00 0.00 3.28
1286 1298 5.220931 GGTTGATTGCTATGGCTACAAAGAG 60.221 44.000 1.68 0.00 39.59 2.85
1297 1309 4.141482 TGGCTACAAAGAGGAAGACAAAGT 60.141 41.667 0.00 0.00 0.00 2.66
1305 1317 4.499183 AGAGGAAGACAAAGTAGATTGCG 58.501 43.478 0.00 0.00 33.52 4.85
1419 1431 4.136796 CAGGATTTCCAATATCGAAGGCA 58.863 43.478 0.00 0.00 38.89 4.75
1437 1449 1.276138 GCAGCCCAGTAAAGCCAAAAT 59.724 47.619 0.00 0.00 0.00 1.82
1497 1509 7.308770 CCAATCAACTGTGACACAAACATAGAT 60.309 37.037 10.02 5.05 36.31 1.98
1508 1520 4.393062 CACAAACATAGATCTTGGCGAAGT 59.607 41.667 8.41 0.00 0.00 3.01
1571 1583 3.722147 CAGCTGTGGATACTATGGACAC 58.278 50.000 5.25 0.00 37.61 3.67
1581 1593 3.536956 ACTATGGACACCATAACACCG 57.463 47.619 10.96 3.19 44.65 4.94
1584 1596 0.326595 TGGACACCATAACACCGCAT 59.673 50.000 0.00 0.00 0.00 4.73
1612 1624 1.959085 CCTGCAATCACACCACCAC 59.041 57.895 0.00 0.00 0.00 4.16
1643 1655 5.046288 ACCCATGAGGCAAAAATGAAAAA 57.954 34.783 0.00 0.00 40.58 1.94
1818 1830 0.967380 GCTGCAAGGCCCACATAAGT 60.967 55.000 0.00 0.00 0.00 2.24
1827 1839 2.706190 GGCCCACATAAGTAGATCCTGT 59.294 50.000 0.00 0.00 0.00 4.00
1906 1918 7.038659 TGGCTGGTAATTTGGAAATTTTATCG 58.961 34.615 2.79 0.00 39.24 2.92
2046 2069 4.628333 CCTTGGTTTGATTGTGCATTCATC 59.372 41.667 0.00 0.00 0.00 2.92
2055 2078 4.582701 TTGTGCATTCATCGTTTCCTTT 57.417 36.364 0.00 0.00 0.00 3.11
2056 2079 3.899734 TGTGCATTCATCGTTTCCTTTG 58.100 40.909 0.00 0.00 0.00 2.77
2060 2083 4.098416 GCATTCATCGTTTCCTTTGTAGC 58.902 43.478 0.00 0.00 0.00 3.58
2077 2100 9.090692 CCTTTGTAGCAGAATAAATGATTTTGG 57.909 33.333 0.00 0.00 31.66 3.28
2079 2102 7.167924 TGTAGCAGAATAAATGATTTTGGCA 57.832 32.000 0.00 0.00 31.66 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.344679 TGAAGTTGGGCAATTGACTGAATT 59.655 37.500 11.97 5.57 34.34 2.17
19 20 3.896888 TGAAGTTGGGCAATTGACTGAAT 59.103 39.130 11.97 0.00 0.00 2.57
20 21 3.295093 TGAAGTTGGGCAATTGACTGAA 58.705 40.909 11.97 1.54 0.00 3.02
21 22 2.942804 TGAAGTTGGGCAATTGACTGA 58.057 42.857 11.97 0.00 0.00 3.41
22 23 3.731652 TTGAAGTTGGGCAATTGACTG 57.268 42.857 11.97 0.00 0.00 3.51
23 24 4.961438 AATTGAAGTTGGGCAATTGACT 57.039 36.364 11.97 1.14 41.63 3.41
24 25 4.815846 ACAAATTGAAGTTGGGCAATTGAC 59.184 37.500 10.34 6.06 42.17 3.18
25 26 5.033589 ACAAATTGAAGTTGGGCAATTGA 57.966 34.783 10.34 0.00 42.17 2.57
26 27 5.754543 AACAAATTGAAGTTGGGCAATTG 57.245 34.783 10.25 0.00 42.17 2.32
27 28 6.262049 GGTAAACAAATTGAAGTTGGGCAATT 59.738 34.615 10.25 0.00 44.17 2.32
28 29 5.762711 GGTAAACAAATTGAAGTTGGGCAAT 59.237 36.000 10.25 0.00 36.35 3.56
29 30 5.119694 GGTAAACAAATTGAAGTTGGGCAA 58.880 37.500 10.25 0.00 0.00 4.52
30 31 4.698575 GGTAAACAAATTGAAGTTGGGCA 58.301 39.130 10.25 0.00 0.00 5.36
31 32 3.738791 CGGTAAACAAATTGAAGTTGGGC 59.261 43.478 10.25 0.00 0.00 5.36
32 33 4.742659 CACGGTAAACAAATTGAAGTTGGG 59.257 41.667 10.25 0.00 0.00 4.12
33 34 4.208253 GCACGGTAAACAAATTGAAGTTGG 59.792 41.667 10.25 0.00 0.00 3.77
34 35 5.040635 AGCACGGTAAACAAATTGAAGTTG 58.959 37.500 3.59 3.59 0.00 3.16
35 36 5.257082 AGCACGGTAAACAAATTGAAGTT 57.743 34.783 0.00 0.00 0.00 2.66
36 37 4.911514 AGCACGGTAAACAAATTGAAGT 57.088 36.364 0.00 0.00 0.00 3.01
37 38 5.997385 AGTAGCACGGTAAACAAATTGAAG 58.003 37.500 0.00 0.00 0.00 3.02
38 39 6.707161 ACTAGTAGCACGGTAAACAAATTGAA 59.293 34.615 0.00 0.00 0.00 2.69
39 40 6.146510 CACTAGTAGCACGGTAAACAAATTGA 59.853 38.462 0.00 0.00 0.00 2.57
40 41 6.146510 TCACTAGTAGCACGGTAAACAAATTG 59.853 38.462 0.00 0.00 0.00 2.32
41 42 6.225318 TCACTAGTAGCACGGTAAACAAATT 58.775 36.000 0.00 0.00 0.00 1.82
42 43 5.786311 TCACTAGTAGCACGGTAAACAAAT 58.214 37.500 0.00 0.00 0.00 2.32
43 44 5.199024 TCACTAGTAGCACGGTAAACAAA 57.801 39.130 0.00 0.00 0.00 2.83
44 45 4.852134 TCACTAGTAGCACGGTAAACAA 57.148 40.909 0.00 0.00 0.00 2.83
45 46 4.549458 GTTCACTAGTAGCACGGTAAACA 58.451 43.478 0.00 0.00 0.00 2.83
46 47 3.922850 GGTTCACTAGTAGCACGGTAAAC 59.077 47.826 0.00 0.00 0.00 2.01
47 48 3.828451 AGGTTCACTAGTAGCACGGTAAA 59.172 43.478 0.00 0.00 0.00 2.01
48 49 3.424703 AGGTTCACTAGTAGCACGGTAA 58.575 45.455 0.00 0.00 0.00 2.85
49 50 3.077484 AGGTTCACTAGTAGCACGGTA 57.923 47.619 0.00 0.00 0.00 4.02
50 51 1.920610 AGGTTCACTAGTAGCACGGT 58.079 50.000 0.00 0.00 0.00 4.83
51 52 3.795826 GCATAGGTTCACTAGTAGCACGG 60.796 52.174 0.00 0.00 34.56 4.94
52 53 3.372954 GCATAGGTTCACTAGTAGCACG 58.627 50.000 0.00 0.00 34.56 5.34
53 54 3.492829 GGGCATAGGTTCACTAGTAGCAC 60.493 52.174 0.00 0.00 34.56 4.40
54 55 2.698797 GGGCATAGGTTCACTAGTAGCA 59.301 50.000 0.00 0.00 34.56 3.49
55 56 2.037381 GGGGCATAGGTTCACTAGTAGC 59.963 54.545 0.00 0.00 34.56 3.58
56 57 2.633481 GGGGGCATAGGTTCACTAGTAG 59.367 54.545 0.00 0.00 34.56 2.57
57 58 2.249214 AGGGGGCATAGGTTCACTAGTA 59.751 50.000 0.00 0.00 34.56 1.82
58 59 1.009675 AGGGGGCATAGGTTCACTAGT 59.990 52.381 0.00 0.00 34.56 2.57
59 60 1.417890 CAGGGGGCATAGGTTCACTAG 59.582 57.143 0.00 0.00 34.56 2.57
60 61 1.507140 CAGGGGGCATAGGTTCACTA 58.493 55.000 0.00 0.00 35.80 2.74
61 62 1.281925 CCAGGGGGCATAGGTTCACT 61.282 60.000 0.00 0.00 0.00 3.41
62 63 1.227383 CCAGGGGGCATAGGTTCAC 59.773 63.158 0.00 0.00 0.00 3.18
63 64 2.006415 CCCAGGGGGCATAGGTTCA 61.006 63.158 0.00 0.00 35.35 3.18
64 65 2.927056 CCCAGGGGGCATAGGTTC 59.073 66.667 0.00 0.00 35.35 3.62
74 75 2.124560 ATGGAGAATAGACCCAGGGG 57.875 55.000 11.37 6.87 42.03 4.79
75 76 5.850046 ATTAATGGAGAATAGACCCAGGG 57.150 43.478 2.85 2.85 32.90 4.45
76 77 9.813826 AATTTATTAATGGAGAATAGACCCAGG 57.186 33.333 0.00 0.00 32.90 4.45
86 87 9.168451 TGCGTACAAGAATTTATTAATGGAGAA 57.832 29.630 0.00 0.00 0.00 2.87
87 88 8.725405 TGCGTACAAGAATTTATTAATGGAGA 57.275 30.769 0.00 0.00 0.00 3.71
88 89 9.950680 ATTGCGTACAAGAATTTATTAATGGAG 57.049 29.630 0.00 0.00 39.69 3.86
98 99 9.744468 AAAAGAGTAAATTGCGTACAAGAATTT 57.256 25.926 9.93 9.93 39.69 1.82
99 100 9.744468 AAAAAGAGTAAATTGCGTACAAGAATT 57.256 25.926 0.00 0.00 39.69 2.17
105 106 9.615295 GGAAATAAAAAGAGTAAATTGCGTACA 57.385 29.630 0.00 0.00 0.00 2.90
106 107 9.069078 GGGAAATAAAAAGAGTAAATTGCGTAC 57.931 33.333 0.00 0.00 0.00 3.67
107 108 7.964011 CGGGAAATAAAAAGAGTAAATTGCGTA 59.036 33.333 0.00 0.00 0.00 4.42
108 109 6.804783 CGGGAAATAAAAAGAGTAAATTGCGT 59.195 34.615 0.00 0.00 0.00 5.24
109 110 6.804783 ACGGGAAATAAAAAGAGTAAATTGCG 59.195 34.615 0.00 0.00 0.00 4.85
110 111 7.411480 GCACGGGAAATAAAAAGAGTAAATTGC 60.411 37.037 0.00 0.00 0.00 3.56
111 112 7.812669 AGCACGGGAAATAAAAAGAGTAAATTG 59.187 33.333 0.00 0.00 0.00 2.32
112 113 7.892609 AGCACGGGAAATAAAAAGAGTAAATT 58.107 30.769 0.00 0.00 0.00 1.82
113 114 7.462571 AGCACGGGAAATAAAAAGAGTAAAT 57.537 32.000 0.00 0.00 0.00 1.40
114 115 6.887626 AGCACGGGAAATAAAAAGAGTAAA 57.112 33.333 0.00 0.00 0.00 2.01
115 116 8.570068 AATAGCACGGGAAATAAAAAGAGTAA 57.430 30.769 0.00 0.00 0.00 2.24
116 117 8.570068 AAATAGCACGGGAAATAAAAAGAGTA 57.430 30.769 0.00 0.00 0.00 2.59
117 118 7.462571 AAATAGCACGGGAAATAAAAAGAGT 57.537 32.000 0.00 0.00 0.00 3.24
118 119 9.285770 GTAAAATAGCACGGGAAATAAAAAGAG 57.714 33.333 0.00 0.00 0.00 2.85
119 120 8.245491 GGTAAAATAGCACGGGAAATAAAAAGA 58.755 33.333 0.00 0.00 0.00 2.52
120 121 8.030106 TGGTAAAATAGCACGGGAAATAAAAAG 58.970 33.333 0.00 0.00 0.00 2.27
121 122 7.813627 GTGGTAAAATAGCACGGGAAATAAAAA 59.186 33.333 4.21 0.00 45.66 1.94
122 123 7.314393 GTGGTAAAATAGCACGGGAAATAAAA 58.686 34.615 4.21 0.00 45.66 1.52
123 124 6.854778 GTGGTAAAATAGCACGGGAAATAAA 58.145 36.000 4.21 0.00 45.66 1.40
124 125 6.439675 GTGGTAAAATAGCACGGGAAATAA 57.560 37.500 4.21 0.00 45.66 1.40
126 127 4.976224 GTGGTAAAATAGCACGGGAAAT 57.024 40.909 4.21 0.00 45.66 2.17
169 170 9.651913 CCTTGCCTTGCTAATTAAAAGATTAAA 57.348 29.630 8.49 0.16 34.80 1.52
170 171 8.257306 CCCTTGCCTTGCTAATTAAAAGATTAA 58.743 33.333 8.49 0.00 35.57 1.40
171 172 7.147742 CCCCTTGCCTTGCTAATTAAAAGATTA 60.148 37.037 8.49 0.00 0.00 1.75
172 173 6.352137 CCCCTTGCCTTGCTAATTAAAAGATT 60.352 38.462 8.49 0.00 0.00 2.40
173 174 5.129320 CCCCTTGCCTTGCTAATTAAAAGAT 59.871 40.000 8.49 0.00 0.00 2.40
174 175 4.466015 CCCCTTGCCTTGCTAATTAAAAGA 59.534 41.667 8.49 0.00 0.00 2.52
175 176 4.758688 CCCCTTGCCTTGCTAATTAAAAG 58.241 43.478 2.03 2.03 0.00 2.27
176 177 3.055458 GCCCCTTGCCTTGCTAATTAAAA 60.055 43.478 0.00 0.00 0.00 1.52
177 178 2.499693 GCCCCTTGCCTTGCTAATTAAA 59.500 45.455 0.00 0.00 0.00 1.52
178 179 2.107366 GCCCCTTGCCTTGCTAATTAA 58.893 47.619 0.00 0.00 0.00 1.40
179 180 1.287739 AGCCCCTTGCCTTGCTAATTA 59.712 47.619 0.00 0.00 42.71 1.40
180 181 0.041684 AGCCCCTTGCCTTGCTAATT 59.958 50.000 0.00 0.00 42.71 1.40
181 182 0.041684 AAGCCCCTTGCCTTGCTAAT 59.958 50.000 0.00 0.00 42.71 1.73
182 183 0.899717 CAAGCCCCTTGCCTTGCTAA 60.900 55.000 0.00 0.00 42.71 3.09
183 184 1.304381 CAAGCCCCTTGCCTTGCTA 60.304 57.895 0.00 0.00 42.71 3.49
184 185 2.602568 CAAGCCCCTTGCCTTGCT 60.603 61.111 0.00 0.00 42.71 3.91
185 186 2.601367 TCAAGCCCCTTGCCTTGC 60.601 61.111 0.22 0.00 40.84 4.01
186 187 1.114722 TTGTCAAGCCCCTTGCCTTG 61.115 55.000 0.22 0.00 40.84 3.61
187 188 1.115326 GTTGTCAAGCCCCTTGCCTT 61.115 55.000 0.22 0.00 40.84 4.35
188 189 1.531602 GTTGTCAAGCCCCTTGCCT 60.532 57.895 0.22 0.00 40.84 4.75
189 190 2.574018 GGTTGTCAAGCCCCTTGCC 61.574 63.158 3.25 0.00 40.84 4.52
190 191 2.574018 GGGTTGTCAAGCCCCTTGC 61.574 63.158 21.09 0.00 43.23 4.01
191 192 1.153756 AGGGTTGTCAAGCCCCTTG 59.846 57.895 26.51 0.00 46.92 3.61
192 193 3.688032 AGGGTTGTCAAGCCCCTT 58.312 55.556 26.51 8.97 46.92 3.95
197 198 0.823356 TGGCAAGAGGGTTGTCAAGC 60.823 55.000 6.20 6.20 30.24 4.01
198 199 1.542915 CATGGCAAGAGGGTTGTCAAG 59.457 52.381 0.00 0.00 37.58 3.02
199 200 1.133513 ACATGGCAAGAGGGTTGTCAA 60.134 47.619 0.00 0.00 37.58 3.18
200 201 0.478072 ACATGGCAAGAGGGTTGTCA 59.522 50.000 0.00 0.00 38.49 3.58
201 202 1.270550 CAACATGGCAAGAGGGTTGTC 59.729 52.381 0.00 0.00 35.37 3.18
202 203 1.331214 CAACATGGCAAGAGGGTTGT 58.669 50.000 0.00 0.00 35.37 3.32
203 204 0.604578 CCAACATGGCAAGAGGGTTG 59.395 55.000 0.00 4.76 38.76 3.77
204 205 0.542702 CCCAACATGGCAAGAGGGTT 60.543 55.000 14.02 2.52 35.79 4.11
205 206 1.077265 CCCAACATGGCAAGAGGGT 59.923 57.895 14.02 0.00 35.79 4.34
206 207 1.077265 ACCCAACATGGCAAGAGGG 59.923 57.895 18.52 18.52 42.07 4.30
207 208 1.880819 GCACCCAACATGGCAAGAGG 61.881 60.000 0.00 0.00 35.79 3.69
208 209 1.180456 TGCACCCAACATGGCAAGAG 61.180 55.000 0.00 0.00 35.79 2.85
209 210 0.758310 TTGCACCCAACATGGCAAGA 60.758 50.000 0.00 0.00 40.94 3.02
210 211 1.747145 TTGCACCCAACATGGCAAG 59.253 52.632 0.00 0.00 40.94 4.01
211 212 1.047596 ACTTGCACCCAACATGGCAA 61.048 50.000 0.00 0.93 43.32 4.52
212 213 1.047596 AACTTGCACCCAACATGGCA 61.048 50.000 0.00 0.00 35.79 4.92
213 214 0.106521 AAACTTGCACCCAACATGGC 59.893 50.000 0.00 0.00 35.79 4.40
214 215 1.138661 ACAAACTTGCACCCAACATGG 59.861 47.619 0.00 0.00 37.25 3.66
215 216 2.600470 ACAAACTTGCACCCAACATG 57.400 45.000 0.00 0.00 0.00 3.21
216 217 4.151883 AGATACAAACTTGCACCCAACAT 58.848 39.130 0.00 0.00 0.00 2.71
217 218 3.561143 AGATACAAACTTGCACCCAACA 58.439 40.909 0.00 0.00 0.00 3.33
218 219 4.202111 ACAAGATACAAACTTGCACCCAAC 60.202 41.667 0.00 0.00 45.66 3.77
219 220 3.957497 ACAAGATACAAACTTGCACCCAA 59.043 39.130 0.00 0.00 45.66 4.12
220 221 3.561143 ACAAGATACAAACTTGCACCCA 58.439 40.909 0.00 0.00 45.66 4.51
221 222 4.584327 AACAAGATACAAACTTGCACCC 57.416 40.909 0.00 0.00 45.66 4.61
222 223 5.231991 CACAAACAAGATACAAACTTGCACC 59.768 40.000 0.00 0.00 45.66 5.01
223 224 5.804979 ACACAAACAAGATACAAACTTGCAC 59.195 36.000 0.00 0.00 45.66 4.57
224 225 5.804473 CACACAAACAAGATACAAACTTGCA 59.196 36.000 0.00 0.00 45.66 4.08
225 226 5.804979 ACACACAAACAAGATACAAACTTGC 59.195 36.000 0.00 0.00 45.66 4.01
226 227 7.643764 CCTACACACAAACAAGATACAAACTTG 59.356 37.037 0.00 0.00 46.69 3.16
227 228 7.338449 ACCTACACACAAACAAGATACAAACTT 59.662 33.333 0.00 0.00 0.00 2.66
228 229 6.826741 ACCTACACACAAACAAGATACAAACT 59.173 34.615 0.00 0.00 0.00 2.66
229 230 6.910433 CACCTACACACAAACAAGATACAAAC 59.090 38.462 0.00 0.00 0.00 2.93
230 231 6.600032 ACACCTACACACAAACAAGATACAAA 59.400 34.615 0.00 0.00 0.00 2.83
231 232 6.037720 CACACCTACACACAAACAAGATACAA 59.962 38.462 0.00 0.00 0.00 2.41
232 233 5.525745 CACACCTACACACAAACAAGATACA 59.474 40.000 0.00 0.00 0.00 2.29
233 234 5.526111 ACACACCTACACACAAACAAGATAC 59.474 40.000 0.00 0.00 0.00 2.24
234 235 5.676552 ACACACCTACACACAAACAAGATA 58.323 37.500 0.00 0.00 0.00 1.98
235 236 4.523083 ACACACCTACACACAAACAAGAT 58.477 39.130 0.00 0.00 0.00 2.40
236 237 3.945346 ACACACCTACACACAAACAAGA 58.055 40.909 0.00 0.00 0.00 3.02
237 238 4.695217 AACACACCTACACACAAACAAG 57.305 40.909 0.00 0.00 0.00 3.16
238 239 6.761099 ATAAACACACCTACACACAAACAA 57.239 33.333 0.00 0.00 0.00 2.83
239 240 8.346300 CAATATAAACACACCTACACACAAACA 58.654 33.333 0.00 0.00 0.00 2.83
240 241 8.347035 ACAATATAAACACACCTACACACAAAC 58.653 33.333 0.00 0.00 0.00 2.93
241 242 8.453238 ACAATATAAACACACCTACACACAAA 57.547 30.769 0.00 0.00 0.00 2.83
242 243 8.453238 AACAATATAAACACACCTACACACAA 57.547 30.769 0.00 0.00 0.00 3.33
243 244 9.210329 CTAACAATATAAACACACCTACACACA 57.790 33.333 0.00 0.00 0.00 3.72
244 245 8.173130 GCTAACAATATAAACACACCTACACAC 58.827 37.037 0.00 0.00 0.00 3.82
245 246 7.878644 TGCTAACAATATAAACACACCTACACA 59.121 33.333 0.00 0.00 0.00 3.72
246 247 8.259049 TGCTAACAATATAAACACACCTACAC 57.741 34.615 0.00 0.00 0.00 2.90
247 248 8.888716 CATGCTAACAATATAAACACACCTACA 58.111 33.333 0.00 0.00 0.00 2.74
248 249 8.342634 CCATGCTAACAATATAAACACACCTAC 58.657 37.037 0.00 0.00 0.00 3.18
249 250 8.268605 TCCATGCTAACAATATAAACACACCTA 58.731 33.333 0.00 0.00 0.00 3.08
250 251 7.116075 TCCATGCTAACAATATAAACACACCT 58.884 34.615 0.00 0.00 0.00 4.00
251 252 7.328277 TCCATGCTAACAATATAAACACACC 57.672 36.000 0.00 0.00 0.00 4.16
252 253 7.432252 GCTTCCATGCTAACAATATAAACACAC 59.568 37.037 0.00 0.00 0.00 3.82
253 254 7.339212 AGCTTCCATGCTAACAATATAAACACA 59.661 33.333 0.00 0.00 42.10 3.72
254 255 7.707104 AGCTTCCATGCTAACAATATAAACAC 58.293 34.615 0.00 0.00 42.10 3.32
255 256 7.880160 AGCTTCCATGCTAACAATATAAACA 57.120 32.000 0.00 0.00 42.10 2.83
256 257 9.237846 GAAAGCTTCCATGCTAACAATATAAAC 57.762 33.333 0.00 0.00 43.24 2.01
257 258 9.189156 AGAAAGCTTCCATGCTAACAATATAAA 57.811 29.630 0.00 0.00 43.24 1.40
258 259 8.752005 AGAAAGCTTCCATGCTAACAATATAA 57.248 30.769 0.00 0.00 43.24 0.98
259 260 9.273016 GTAGAAAGCTTCCATGCTAACAATATA 57.727 33.333 0.00 0.00 43.24 0.86
260 261 7.775093 TGTAGAAAGCTTCCATGCTAACAATAT 59.225 33.333 0.00 0.00 43.24 1.28
261 262 7.109501 TGTAGAAAGCTTCCATGCTAACAATA 58.890 34.615 0.00 0.00 43.24 1.90
262 263 5.945784 TGTAGAAAGCTTCCATGCTAACAAT 59.054 36.000 0.00 0.00 43.24 2.71
263 264 5.312895 TGTAGAAAGCTTCCATGCTAACAA 58.687 37.500 0.00 0.00 43.24 2.83
264 265 4.905429 TGTAGAAAGCTTCCATGCTAACA 58.095 39.130 0.00 0.00 43.24 2.41
265 266 4.333926 CCTGTAGAAAGCTTCCATGCTAAC 59.666 45.833 0.00 0.00 43.24 2.34
266 267 4.225042 TCCTGTAGAAAGCTTCCATGCTAA 59.775 41.667 0.00 0.00 43.24 3.09
267 268 3.774766 TCCTGTAGAAAGCTTCCATGCTA 59.225 43.478 0.00 0.00 43.24 3.49
268 269 2.573462 TCCTGTAGAAAGCTTCCATGCT 59.427 45.455 0.00 0.00 46.40 3.79
269 270 2.991250 TCCTGTAGAAAGCTTCCATGC 58.009 47.619 0.00 0.00 0.00 4.06
270 271 5.188434 TCAATCCTGTAGAAAGCTTCCATG 58.812 41.667 0.00 0.00 0.00 3.66
271 272 5.441718 TCAATCCTGTAGAAAGCTTCCAT 57.558 39.130 0.00 0.00 0.00 3.41
272 273 4.908601 TCAATCCTGTAGAAAGCTTCCA 57.091 40.909 0.00 0.00 0.00 3.53
273 274 6.261158 GGTTATCAATCCTGTAGAAAGCTTCC 59.739 42.308 0.00 0.00 0.00 3.46
274 275 7.051000 AGGTTATCAATCCTGTAGAAAGCTTC 58.949 38.462 0.00 0.00 32.29 3.86
275 276 6.963322 AGGTTATCAATCCTGTAGAAAGCTT 58.037 36.000 0.00 0.00 32.29 3.74
276 277 6.567602 AGGTTATCAATCCTGTAGAAAGCT 57.432 37.500 0.00 0.00 32.29 3.74
277 278 7.121315 ACAAAGGTTATCAATCCTGTAGAAAGC 59.879 37.037 0.00 0.00 33.97 3.51
278 279 8.567285 ACAAAGGTTATCAATCCTGTAGAAAG 57.433 34.615 0.00 0.00 33.97 2.62
279 280 8.934023 AACAAAGGTTATCAATCCTGTAGAAA 57.066 30.769 0.00 0.00 34.87 2.52
280 281 8.383175 AGAACAAAGGTTATCAATCCTGTAGAA 58.617 33.333 0.00 0.00 37.36 2.10
281 282 7.918076 AGAACAAAGGTTATCAATCCTGTAGA 58.082 34.615 0.00 0.00 37.36 2.59
282 283 8.043710 AGAGAACAAAGGTTATCAATCCTGTAG 58.956 37.037 5.20 0.00 45.43 2.74
283 284 7.918076 AGAGAACAAAGGTTATCAATCCTGTA 58.082 34.615 5.20 0.00 45.43 2.74
284 285 6.784031 AGAGAACAAAGGTTATCAATCCTGT 58.216 36.000 5.20 0.00 45.43 4.00
285 286 8.669243 GTTAGAGAACAAAGGTTATCAATCCTG 58.331 37.037 5.20 0.00 45.43 3.86
286 287 7.829706 GGTTAGAGAACAAAGGTTATCAATCCT 59.170 37.037 5.20 0.00 45.43 3.24
287 288 7.201617 CGGTTAGAGAACAAAGGTTATCAATCC 60.202 40.741 5.20 3.44 45.43 3.01
288 289 7.548075 TCGGTTAGAGAACAAAGGTTATCAATC 59.452 37.037 5.20 0.00 45.43 2.67
289 290 7.391620 TCGGTTAGAGAACAAAGGTTATCAAT 58.608 34.615 5.20 0.00 45.43 2.57
290 291 6.761312 TCGGTTAGAGAACAAAGGTTATCAA 58.239 36.000 5.20 0.00 45.43 2.57
291 292 6.349243 TCGGTTAGAGAACAAAGGTTATCA 57.651 37.500 5.20 0.00 45.43 2.15
292 293 6.313164 CCTTCGGTTAGAGAACAAAGGTTATC 59.687 42.308 10.69 0.00 43.80 1.75
293 294 6.013984 TCCTTCGGTTAGAGAACAAAGGTTAT 60.014 38.462 15.29 0.00 43.68 1.89
294 295 5.305128 TCCTTCGGTTAGAGAACAAAGGTTA 59.695 40.000 15.29 2.24 43.68 2.85
295 296 4.102054 TCCTTCGGTTAGAGAACAAAGGTT 59.898 41.667 15.29 0.00 43.68 3.50
296 297 3.644738 TCCTTCGGTTAGAGAACAAAGGT 59.355 43.478 15.29 0.00 43.68 3.50
297 298 4.267349 TCCTTCGGTTAGAGAACAAAGG 57.733 45.455 11.91 11.91 44.13 3.11
298 299 6.803154 ATTTCCTTCGGTTAGAGAACAAAG 57.197 37.500 0.00 0.00 37.29 2.77
299 300 7.447594 AGTATTTCCTTCGGTTAGAGAACAAA 58.552 34.615 0.00 0.00 37.29 2.83
300 301 7.001099 AGTATTTCCTTCGGTTAGAGAACAA 57.999 36.000 0.00 0.00 37.29 2.83
301 302 6.600882 AGTATTTCCTTCGGTTAGAGAACA 57.399 37.500 0.00 0.00 37.29 3.18
302 303 7.387122 ACAAAGTATTTCCTTCGGTTAGAGAAC 59.613 37.037 0.00 0.00 35.03 3.01
303 304 7.447594 ACAAAGTATTTCCTTCGGTTAGAGAA 58.552 34.615 0.00 0.00 35.03 2.87
304 305 7.001099 ACAAAGTATTTCCTTCGGTTAGAGA 57.999 36.000 0.00 0.00 35.03 3.10
305 306 7.172703 ACAACAAAGTATTTCCTTCGGTTAGAG 59.827 37.037 0.00 0.00 35.03 2.43
306 307 6.993902 ACAACAAAGTATTTCCTTCGGTTAGA 59.006 34.615 0.00 0.00 35.03 2.10
307 308 7.198306 ACAACAAAGTATTTCCTTCGGTTAG 57.802 36.000 0.00 0.00 35.03 2.34
308 309 7.067251 ACAACAACAAAGTATTTCCTTCGGTTA 59.933 33.333 0.00 0.00 35.03 2.85
309 310 6.127563 ACAACAACAAAGTATTTCCTTCGGTT 60.128 34.615 0.00 0.00 35.03 4.44
310 311 5.358725 ACAACAACAAAGTATTTCCTTCGGT 59.641 36.000 0.00 0.00 35.03 4.69
311 312 5.827666 ACAACAACAAAGTATTTCCTTCGG 58.172 37.500 0.00 0.00 35.03 4.30
312 313 7.193595 AGAACAACAACAAAGTATTTCCTTCG 58.806 34.615 0.00 0.00 35.03 3.79
313 314 9.447040 GTAGAACAACAACAAAGTATTTCCTTC 57.553 33.333 0.00 0.00 35.03 3.46
314 315 8.962679 TGTAGAACAACAACAAAGTATTTCCTT 58.037 29.630 0.00 0.00 35.03 3.36
315 316 8.514330 TGTAGAACAACAACAAAGTATTTCCT 57.486 30.769 0.00 0.00 35.03 3.36
316 317 9.394477 GATGTAGAACAACAACAAAGTATTTCC 57.606 33.333 0.00 0.00 31.24 3.13
317 318 9.944663 TGATGTAGAACAACAACAAAGTATTTC 57.055 29.630 0.00 0.00 28.41 2.17
320 321 8.730680 GGATGATGTAGAACAACAACAAAGTAT 58.269 33.333 0.00 0.00 34.57 2.12
321 322 7.936847 AGGATGATGTAGAACAACAACAAAGTA 59.063 33.333 0.00 0.00 34.57 2.24
322 323 6.772716 AGGATGATGTAGAACAACAACAAAGT 59.227 34.615 0.00 0.00 34.57 2.66
323 324 7.206981 AGGATGATGTAGAACAACAACAAAG 57.793 36.000 0.00 0.00 34.57 2.77
324 325 7.255451 GGAAGGATGATGTAGAACAACAACAAA 60.255 37.037 0.00 0.00 34.57 2.83
325 326 6.206634 GGAAGGATGATGTAGAACAACAACAA 59.793 38.462 0.00 0.00 34.57 2.83
326 327 5.705441 GGAAGGATGATGTAGAACAACAACA 59.295 40.000 0.00 0.00 34.57 3.33
327 328 5.940470 AGGAAGGATGATGTAGAACAACAAC 59.060 40.000 0.00 0.00 34.57 3.32
328 329 6.013379 AGAGGAAGGATGATGTAGAACAACAA 60.013 38.462 0.00 0.00 34.57 2.83
329 330 5.485353 AGAGGAAGGATGATGTAGAACAACA 59.515 40.000 0.00 0.00 35.37 3.33
330 331 5.983540 AGAGGAAGGATGATGTAGAACAAC 58.016 41.667 0.00 0.00 0.00 3.32
331 332 6.627087 AAGAGGAAGGATGATGTAGAACAA 57.373 37.500 0.00 0.00 0.00 2.83
332 333 6.409704 CAAAGAGGAAGGATGATGTAGAACA 58.590 40.000 0.00 0.00 0.00 3.18
333 334 5.819901 CCAAAGAGGAAGGATGATGTAGAAC 59.180 44.000 0.00 0.00 41.22 3.01
334 335 5.104360 CCCAAAGAGGAAGGATGATGTAGAA 60.104 44.000 0.00 0.00 41.22 2.10
335 336 4.410228 CCCAAAGAGGAAGGATGATGTAGA 59.590 45.833 0.00 0.00 41.22 2.59
336 337 4.445448 CCCCAAAGAGGAAGGATGATGTAG 60.445 50.000 0.00 0.00 41.22 2.74
337 338 3.459598 CCCCAAAGAGGAAGGATGATGTA 59.540 47.826 0.00 0.00 41.22 2.29
338 339 2.243221 CCCCAAAGAGGAAGGATGATGT 59.757 50.000 0.00 0.00 41.22 3.06
339 340 2.423947 CCCCCAAAGAGGAAGGATGATG 60.424 54.545 0.00 0.00 41.22 3.07
340 341 1.855599 CCCCCAAAGAGGAAGGATGAT 59.144 52.381 0.00 0.00 41.22 2.45
341 342 1.203557 TCCCCCAAAGAGGAAGGATGA 60.204 52.381 0.00 0.00 41.22 2.92
342 343 1.298953 TCCCCCAAAGAGGAAGGATG 58.701 55.000 0.00 0.00 41.22 3.51
343 344 2.043115 GTTTCCCCCAAAGAGGAAGGAT 59.957 50.000 0.00 0.00 42.91 3.24
344 345 1.427753 GTTTCCCCCAAAGAGGAAGGA 59.572 52.381 0.00 0.00 42.91 3.36
345 346 1.550179 GGTTTCCCCCAAAGAGGAAGG 60.550 57.143 0.00 0.00 42.91 3.46
346 347 1.924731 GGTTTCCCCCAAAGAGGAAG 58.075 55.000 0.00 0.00 42.91 3.46
358 359 3.513912 CCAAAGGAGTTATTGGGTTTCCC 59.486 47.826 0.00 0.00 45.71 3.97
359 360 4.801330 CCAAAGGAGTTATTGGGTTTCC 57.199 45.455 0.00 0.00 41.93 3.13
374 375 8.263181 TACAGTAGTATGTTGCCTCCCAAAGG 62.263 46.154 0.00 0.00 40.27 3.11
375 376 3.941483 CAGTAGTATGTTGCCTCCCAAAG 59.059 47.826 0.00 0.00 34.68 2.77
376 377 3.329520 ACAGTAGTATGTTGCCTCCCAAA 59.670 43.478 0.00 0.00 34.68 3.28
377 378 2.910319 ACAGTAGTATGTTGCCTCCCAA 59.090 45.455 0.00 0.00 0.00 4.12
378 379 2.546899 ACAGTAGTATGTTGCCTCCCA 58.453 47.619 0.00 0.00 0.00 4.37
379 380 3.958798 TCTACAGTAGTATGTTGCCTCCC 59.041 47.826 7.50 0.00 34.56 4.30
380 381 5.593679 TTCTACAGTAGTATGTTGCCTCC 57.406 43.478 7.50 0.00 34.56 4.30
381 382 6.036191 GCTTTTCTACAGTAGTATGTTGCCTC 59.964 42.308 7.50 0.00 34.56 4.70
382 383 5.875359 GCTTTTCTACAGTAGTATGTTGCCT 59.125 40.000 7.50 0.00 34.56 4.75
383 384 5.875359 AGCTTTTCTACAGTAGTATGTTGCC 59.125 40.000 7.50 0.00 34.56 4.52
384 385 6.969828 AGCTTTTCTACAGTAGTATGTTGC 57.030 37.500 7.50 6.30 34.56 4.17
396 397 7.721402 TCCTTGCAATTTTAAGCTTTTCTACA 58.279 30.769 3.20 0.00 0.00 2.74
397 398 8.587952 TTCCTTGCAATTTTAAGCTTTTCTAC 57.412 30.769 3.20 0.00 0.00 2.59
404 405 8.956533 TTTTAGTTTCCTTGCAATTTTAAGCT 57.043 26.923 0.00 2.57 0.00 3.74
405 406 8.826710 ACTTTTAGTTTCCTTGCAATTTTAAGC 58.173 29.630 0.00 0.00 0.00 3.09
408 409 9.877178 TCAACTTTTAGTTTCCTTGCAATTTTA 57.123 25.926 0.00 0.00 36.03 1.52
409 410 8.664798 GTCAACTTTTAGTTTCCTTGCAATTTT 58.335 29.630 0.00 0.00 36.03 1.82
410 411 7.821846 TGTCAACTTTTAGTTTCCTTGCAATTT 59.178 29.630 0.00 0.00 36.03 1.82
411 412 7.327214 TGTCAACTTTTAGTTTCCTTGCAATT 58.673 30.769 0.00 0.00 36.03 2.32
413 414 6.274157 TGTCAACTTTTAGTTTCCTTGCAA 57.726 33.333 0.00 0.00 36.03 4.08
414 415 5.906113 TGTCAACTTTTAGTTTCCTTGCA 57.094 34.783 0.00 0.00 36.03 4.08
415 416 5.232202 GCTTGTCAACTTTTAGTTTCCTTGC 59.768 40.000 0.00 0.00 36.03 4.01
434 435 3.306472 TTAACAAAGGGGACTGCTTGT 57.694 42.857 0.00 0.00 41.87 3.16
435 436 3.056607 CCATTAACAAAGGGGACTGCTTG 60.057 47.826 0.00 0.00 42.68 4.01
438 439 2.525368 ACCATTAACAAAGGGGACTGC 58.475 47.619 0.00 0.00 42.68 4.40
439 440 4.918588 ACTACCATTAACAAAGGGGACTG 58.081 43.478 0.00 0.00 42.68 3.51
441 442 5.175388 AGACTACCATTAACAAAGGGGAC 57.825 43.478 0.00 0.00 0.00 4.46
442 443 7.183112 TGAATAGACTACCATTAACAAAGGGGA 59.817 37.037 0.00 0.00 0.00 4.81
443 444 7.343357 TGAATAGACTACCATTAACAAAGGGG 58.657 38.462 0.00 0.00 0.00 4.79
450 451 6.896883 AGGGGTTGAATAGACTACCATTAAC 58.103 40.000 0.00 0.00 37.39 2.01
454 455 3.974642 GGAGGGGTTGAATAGACTACCAT 59.025 47.826 0.00 0.00 37.39 3.55
456 457 3.381335 TGGAGGGGTTGAATAGACTACC 58.619 50.000 0.00 0.00 35.56 3.18
460 461 3.108376 AGTCTGGAGGGGTTGAATAGAC 58.892 50.000 0.00 0.00 34.75 2.59
476 477 8.948631 AGTGTGGTATCATTTAACATAGTCTG 57.051 34.615 0.00 0.00 0.00 3.51
503 504 3.320541 CCTAGGATAAGAGAGTGCCACAG 59.679 52.174 1.05 0.00 0.00 3.66
515 516 4.200092 GACCAAAACCAGCCTAGGATAAG 58.800 47.826 14.75 3.50 0.00 1.73
516 517 3.370103 CGACCAAAACCAGCCTAGGATAA 60.370 47.826 14.75 0.00 0.00 1.75
578 582 9.698617 GACACATACGAATTTAAAATGACCTAC 57.301 33.333 4.27 0.00 0.00 3.18
606 610 9.555727 GCTAAAGAAGGATACAAACCATACATA 57.444 33.333 0.00 0.00 41.41 2.29
623 627 9.606631 AAGGAAGTAGATACAATGCTAAAGAAG 57.393 33.333 0.00 0.00 0.00 2.85
642 646 3.009473 AGGTGCATGTGTATCAAGGAAGT 59.991 43.478 0.00 0.00 0.00 3.01
688 692 3.801594 GGTCAATGATGTTTTTGCGTGTT 59.198 39.130 0.00 0.00 0.00 3.32
715 719 3.535629 TTGCTCGTGGTCTGCCTGG 62.536 63.158 0.00 0.00 35.27 4.45
722 726 5.041951 TGATTTATGTTTTGCTCGTGGTC 57.958 39.130 0.00 0.00 0.00 4.02
767 771 7.041303 TGTTTTCTTGCGTTGTTACCATATGTA 60.041 33.333 1.24 0.00 0.00 2.29
769 773 6.146216 TGTTTTCTTGCGTTGTTACCATATG 58.854 36.000 0.00 0.00 0.00 1.78
782 789 6.611464 GCGTCTTCTTAATTTGTTTTCTTGCG 60.611 38.462 0.00 0.00 0.00 4.85
889 897 7.040478 ACGTTGTGTACATAGTTTACACTCCTA 60.040 37.037 12.50 0.00 46.42 2.94
891 899 5.922544 ACGTTGTGTACATAGTTTACACTCC 59.077 40.000 12.50 4.07 46.42 3.85
955 963 8.618702 ACATATGGCTGAAGATAGAGAAAATG 57.381 34.615 7.80 0.00 0.00 2.32
960 968 6.438741 CCCTTACATATGGCTGAAGATAGAGA 59.561 42.308 7.80 0.00 0.00 3.10
967 975 4.330250 CCATCCCTTACATATGGCTGAAG 58.670 47.826 7.80 5.04 34.19 3.02
1157 1169 5.345741 GCATACTTTGCGATTGACATGTTTT 59.654 36.000 0.00 0.00 42.54 2.43
1286 1298 3.619038 CCTCGCAATCTACTTTGTCTTCC 59.381 47.826 0.00 0.00 0.00 3.46
1305 1317 0.033781 TGCTGCCACAAAATTGCCTC 59.966 50.000 0.00 0.00 0.00 4.70
1419 1431 2.299867 CACATTTTGGCTTTACTGGGCT 59.700 45.455 0.00 0.00 0.00 5.19
1437 1449 0.036732 GTGTCATTGCTCCCCTCACA 59.963 55.000 0.00 0.00 0.00 3.58
1497 1509 1.118965 TGACCCTCACTTCGCCAAGA 61.119 55.000 0.00 0.00 33.34 3.02
1508 1520 1.149288 AGACTGGTTACCTGACCCTCA 59.851 52.381 15.16 0.00 39.01 3.86
1612 1624 1.825191 CCTCATGGGTTGGCCATCG 60.825 63.158 6.09 0.00 36.17 3.84
1818 1830 3.107601 CCTCCTTGGTTGACAGGATCTA 58.892 50.000 0.00 0.00 0.00 1.98
1827 1839 4.111577 AGACAATATCCCTCCTTGGTTGA 58.888 43.478 0.00 0.00 0.00 3.18
1936 1951 9.208022 CCTACCAACATATCATATATTATGGCG 57.792 37.037 8.58 1.31 31.46 5.69
2046 2069 7.526608 TCATTTATTCTGCTACAAAGGAAACG 58.473 34.615 0.00 0.00 0.00 3.60
2055 2078 7.167924 TGCCAAAATCATTTATTCTGCTACA 57.832 32.000 0.00 0.00 0.00 2.74
2056 2079 7.223387 CCTTGCCAAAATCATTTATTCTGCTAC 59.777 37.037 0.00 0.00 0.00 3.58
2060 2083 7.910441 AACCTTGCCAAAATCATTTATTCTG 57.090 32.000 0.00 0.00 0.00 3.02
2077 2100 5.390387 TGGGGATGGTATTTATAACCTTGC 58.610 41.667 0.00 0.00 37.91 4.01
2079 2102 7.233855 ACTTGGGGATGGTATTTATAACCTT 57.766 36.000 0.00 0.00 37.91 3.50
2143 2170 7.995463 TTATGTCCAACAAAAACTAAGTTGC 57.005 32.000 0.00 0.00 40.85 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.