Multiple sequence alignment - TraesCS2B01G510200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G510200 chr2B 100.000 3604 0 0 1 3604 706406011 706409614 0.000000e+00 6656
1 TraesCS2B01G510200 chr2D 88.154 2735 142 88 502 3158 585431254 585433884 0.000000e+00 3088
2 TraesCS2B01G510200 chr2D 91.981 212 15 2 153 362 585430518 585430729 2.720000e-76 296
3 TraesCS2B01G510200 chr2D 90.984 122 7 3 3194 3315 585433856 585433973 1.040000e-35 161
4 TraesCS2B01G510200 chr2A 88.291 2340 119 60 502 2765 719525958 719528218 0.000000e+00 2660
5 TraesCS2B01G510200 chr2A 86.320 519 25 17 2811 3315 719528217 719528703 1.150000e-144 523
6 TraesCS2B01G510200 chr2A 94.098 305 2 5 3316 3604 57142351 57142655 1.970000e-122 449
7 TraesCS2B01G510200 chr2A 85.634 355 25 18 153 503 719522891 719523223 2.060000e-92 350
8 TraesCS2B01G510200 chr7B 94.408 304 2 4 3316 3604 570364790 570364487 1.530000e-123 453
9 TraesCS2B01G510200 chr7B 82.500 200 28 7 1829 2024 580885329 580885133 6.190000e-38 169
10 TraesCS2B01G510200 chr7B 82.383 193 30 4 1832 2022 580969961 580969771 8.010000e-37 165
11 TraesCS2B01G510200 chr7B 82.383 193 30 4 1832 2022 581333780 581333970 8.010000e-37 165
12 TraesCS2B01G510200 chr3A 94.137 307 2 5 3314 3604 472793559 472793865 1.530000e-123 453
13 TraesCS2B01G510200 chr3A 93.770 305 3 5 3316 3604 707718268 707718572 9.180000e-121 444
14 TraesCS2B01G510200 chr3A 93.443 305 4 5 3316 3604 707748243 707748547 4.270000e-119 438
15 TraesCS2B01G510200 chr3A 98.394 249 2 1 3358 3604 707809071 707809319 1.540000e-118 436
16 TraesCS2B01G510200 chr4A 93.528 309 4 5 3312 3604 706453174 706453482 2.550000e-121 446
17 TraesCS2B01G510200 chr6A 93.770 305 3 5 3316 3604 134226314 134226618 9.180000e-121 444
18 TraesCS2B01G510200 chr5A 98.795 249 1 1 3358 3604 112315270 112315518 3.300000e-120 442
19 TraesCS2B01G510200 chr3B 93.092 304 6 3 3316 3604 730171406 730171709 7.150000e-117 431
20 TraesCS2B01G510200 chr7A 82.564 195 30 4 1832 2024 619633689 619633497 6.190000e-38 169
21 TraesCS2B01G510200 chr7A 82.564 195 30 4 1832 2024 619907509 619907701 6.190000e-38 169
22 TraesCS2B01G510200 chr7A 82.051 195 31 4 1832 2024 619576313 619576121 2.880000e-36 163
23 TraesCS2B01G510200 chr7D 81.865 193 31 4 1832 2022 538140485 538140295 3.720000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G510200 chr2B 706406011 706409614 3603 False 6656.000000 6656 100.000000 1 3604 1 chr2B.!!$F1 3603
1 TraesCS2B01G510200 chr2D 585430518 585433973 3455 False 1181.666667 3088 90.373000 153 3315 3 chr2D.!!$F1 3162
2 TraesCS2B01G510200 chr2A 719522891 719528703 5812 False 1177.666667 2660 86.748333 153 3315 3 chr2A.!!$F2 3162

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 4083 0.242286 CGAGCTCAGTACAGCACAGT 59.758 55.0 15.4 0.0 42.4 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2780 5991 0.395312 AATCCACGGACGAACAGGTT 59.605 50.0 0.0 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.674525 CTGGAGGAGCACTATTAAACATCA 58.325 41.667 0.00 0.00 0.00 3.07
24 25 6.252599 TGGAGGAGCACTATTAAACATCAT 57.747 37.500 0.00 0.00 0.00 2.45
25 26 6.057533 TGGAGGAGCACTATTAAACATCATG 58.942 40.000 0.00 0.00 0.00 3.07
26 27 5.471456 GGAGGAGCACTATTAAACATCATGG 59.529 44.000 0.00 0.00 0.00 3.66
27 28 5.380043 AGGAGCACTATTAAACATCATGGG 58.620 41.667 0.00 0.00 0.00 4.00
28 29 4.520492 GGAGCACTATTAAACATCATGGGG 59.480 45.833 0.00 0.00 0.00 4.96
29 30 5.376625 GAGCACTATTAAACATCATGGGGA 58.623 41.667 0.00 0.00 0.00 4.81
30 31 5.765510 AGCACTATTAAACATCATGGGGAA 58.234 37.500 0.00 0.00 0.00 3.97
31 32 6.194235 AGCACTATTAAACATCATGGGGAAA 58.806 36.000 0.00 0.00 0.00 3.13
32 33 6.840705 AGCACTATTAAACATCATGGGGAAAT 59.159 34.615 0.00 0.00 0.00 2.17
33 34 6.925165 GCACTATTAAACATCATGGGGAAATG 59.075 38.462 0.00 0.00 0.00 2.32
34 35 7.417797 GCACTATTAAACATCATGGGGAAATGT 60.418 37.037 0.00 0.00 35.20 2.71
35 36 9.130661 CACTATTAAACATCATGGGGAAATGTA 57.869 33.333 0.00 0.00 33.42 2.29
36 37 9.131791 ACTATTAAACATCATGGGGAAATGTAC 57.868 33.333 0.00 0.00 33.42 2.90
37 38 9.354673 CTATTAAACATCATGGGGAAATGTACT 57.645 33.333 0.00 0.00 33.42 2.73
38 39 7.639113 TTAAACATCATGGGGAAATGTACTC 57.361 36.000 0.00 0.00 33.42 2.59
39 40 4.170468 ACATCATGGGGAAATGTACTCC 57.830 45.455 0.00 0.00 32.05 3.85
40 41 3.788142 ACATCATGGGGAAATGTACTCCT 59.212 43.478 0.00 0.00 32.05 3.69
41 42 4.230502 ACATCATGGGGAAATGTACTCCTT 59.769 41.667 0.00 0.00 32.05 3.36
42 43 4.235079 TCATGGGGAAATGTACTCCTTG 57.765 45.455 0.00 0.00 35.31 3.61
43 44 3.591527 TCATGGGGAAATGTACTCCTTGT 59.408 43.478 0.00 0.00 35.45 3.16
44 45 4.785914 TCATGGGGAAATGTACTCCTTGTA 59.214 41.667 0.00 0.00 35.45 2.41
59 60 6.827727 ACTCCTTGTACATTGTAGTTTCTGT 58.172 36.000 0.00 0.00 0.00 3.41
60 61 7.959175 ACTCCTTGTACATTGTAGTTTCTGTA 58.041 34.615 0.00 0.00 0.00 2.74
61 62 8.088981 ACTCCTTGTACATTGTAGTTTCTGTAG 58.911 37.037 0.00 0.00 0.00 2.74
62 63 8.185506 TCCTTGTACATTGTAGTTTCTGTAGA 57.814 34.615 0.00 0.00 0.00 2.59
63 64 8.304596 TCCTTGTACATTGTAGTTTCTGTAGAG 58.695 37.037 0.00 0.00 0.00 2.43
64 65 8.088981 CCTTGTACATTGTAGTTTCTGTAGAGT 58.911 37.037 0.00 0.00 0.00 3.24
66 67 9.903682 TTGTACATTGTAGTTTCTGTAGAGTAC 57.096 33.333 0.00 0.00 0.00 2.73
67 68 9.293404 TGTACATTGTAGTTTCTGTAGAGTACT 57.707 33.333 0.00 0.00 0.00 2.73
74 75 9.578576 TGTAGTTTCTGTAGAGTACTTTAAGGA 57.421 33.333 0.00 0.00 0.00 3.36
75 76 9.838975 GTAGTTTCTGTAGAGTACTTTAAGGAC 57.161 37.037 0.00 0.00 0.00 3.85
76 77 8.709272 AGTTTCTGTAGAGTACTTTAAGGACT 57.291 34.615 9.96 9.96 0.00 3.85
77 78 9.804977 AGTTTCTGTAGAGTACTTTAAGGACTA 57.195 33.333 10.17 0.00 0.00 2.59
79 80 9.804977 TTTCTGTAGAGTACTTTAAGGACTAGT 57.195 33.333 10.17 3.52 0.00 2.57
81 82 9.883142 TCTGTAGAGTACTTTAAGGACTAGTAC 57.117 37.037 10.17 14.26 42.78 2.73
103 104 8.689972 AGTACTACTAAGTATATTTGGCAACGT 58.310 33.333 0.00 0.00 40.30 3.99
104 105 7.766219 ACTACTAAGTATATTTGGCAACGTG 57.234 36.000 0.00 0.00 34.00 4.49
105 106 7.549839 ACTACTAAGTATATTTGGCAACGTGA 58.450 34.615 0.00 0.00 34.00 4.35
106 107 6.657836 ACTAAGTATATTTGGCAACGTGAC 57.342 37.500 0.00 0.00 42.51 3.67
107 108 6.167685 ACTAAGTATATTTGGCAACGTGACA 58.832 36.000 0.00 0.00 42.51 3.58
108 109 4.939509 AGTATATTTGGCAACGTGACAC 57.060 40.909 0.00 0.00 33.32 3.67
109 110 4.575885 AGTATATTTGGCAACGTGACACT 58.424 39.130 0.00 0.00 33.32 3.55
110 111 5.001232 AGTATATTTGGCAACGTGACACTT 58.999 37.500 0.00 0.00 33.32 3.16
111 112 4.846779 ATATTTGGCAACGTGACACTTT 57.153 36.364 0.00 0.00 33.32 2.66
112 113 3.518634 ATTTGGCAACGTGACACTTTT 57.481 38.095 0.00 0.00 33.32 2.27
113 114 2.553079 TTGGCAACGTGACACTTTTC 57.447 45.000 3.68 0.00 33.32 2.29
114 115 1.745232 TGGCAACGTGACACTTTTCT 58.255 45.000 3.68 0.00 42.51 2.52
115 116 2.088423 TGGCAACGTGACACTTTTCTT 58.912 42.857 3.68 0.00 42.51 2.52
116 117 2.096819 TGGCAACGTGACACTTTTCTTC 59.903 45.455 3.68 0.00 42.51 2.87
117 118 2.096819 GGCAACGTGACACTTTTCTTCA 59.903 45.455 3.68 0.00 0.00 3.02
118 119 3.354397 GCAACGTGACACTTTTCTTCAG 58.646 45.455 3.68 0.00 0.00 3.02
119 120 3.181510 GCAACGTGACACTTTTCTTCAGT 60.182 43.478 3.68 0.00 0.00 3.41
120 121 4.033587 GCAACGTGACACTTTTCTTCAGTA 59.966 41.667 3.68 0.00 0.00 2.74
121 122 5.446741 GCAACGTGACACTTTTCTTCAGTAA 60.447 40.000 3.68 0.00 0.00 2.24
122 123 6.539324 CAACGTGACACTTTTCTTCAGTAAA 58.461 36.000 3.68 0.00 0.00 2.01
123 124 6.345920 ACGTGACACTTTTCTTCAGTAAAG 57.654 37.500 3.68 4.80 38.07 1.85
124 125 5.873164 ACGTGACACTTTTCTTCAGTAAAGT 59.127 36.000 3.68 5.90 43.33 2.66
125 126 7.037438 ACGTGACACTTTTCTTCAGTAAAGTA 58.963 34.615 10.26 0.00 41.55 2.24
126 127 7.222224 ACGTGACACTTTTCTTCAGTAAAGTAG 59.778 37.037 10.26 8.27 41.55 2.57
127 128 7.434307 CGTGACACTTTTCTTCAGTAAAGTAGA 59.566 37.037 10.26 0.00 41.55 2.59
128 129 8.756864 GTGACACTTTTCTTCAGTAAAGTAGAG 58.243 37.037 10.26 3.44 41.55 2.43
129 130 8.692710 TGACACTTTTCTTCAGTAAAGTAGAGA 58.307 33.333 10.26 0.00 41.55 3.10
130 131 9.699703 GACACTTTTCTTCAGTAAAGTAGAGAT 57.300 33.333 10.26 0.00 41.55 2.75
131 132 9.482627 ACACTTTTCTTCAGTAAAGTAGAGATG 57.517 33.333 10.26 2.39 41.55 2.90
132 133 8.439286 CACTTTTCTTCAGTAAAGTAGAGATGC 58.561 37.037 10.26 0.00 41.55 3.91
133 134 7.604545 ACTTTTCTTCAGTAAAGTAGAGATGCC 59.395 37.037 9.20 0.00 41.63 4.40
134 135 5.599999 TCTTCAGTAAAGTAGAGATGCCC 57.400 43.478 0.00 0.00 36.31 5.36
135 136 5.273208 TCTTCAGTAAAGTAGAGATGCCCT 58.727 41.667 0.00 0.00 36.31 5.19
136 137 5.361285 TCTTCAGTAAAGTAGAGATGCCCTC 59.639 44.000 0.00 0.00 37.92 4.30
137 138 6.808432 TCTTCAGTAAAGTAGAGATGCCCTCT 60.808 42.308 10.12 10.12 43.01 3.69
138 139 8.553943 TCTTCAGTAAAGTAGAGATGCCCTCTC 61.554 44.444 8.76 7.08 40.83 3.20
145 146 2.715737 GAGATGCCCTCTCGTATCAC 57.284 55.000 0.00 0.00 41.07 3.06
146 147 2.235016 GAGATGCCCTCTCGTATCACT 58.765 52.381 0.00 0.00 41.07 3.41
147 148 2.625790 GAGATGCCCTCTCGTATCACTT 59.374 50.000 0.00 0.00 41.07 3.16
148 149 3.821600 GAGATGCCCTCTCGTATCACTTA 59.178 47.826 0.00 0.00 41.07 2.24
149 150 4.215908 AGATGCCCTCTCGTATCACTTAA 58.784 43.478 0.00 0.00 0.00 1.85
150 151 3.795623 TGCCCTCTCGTATCACTTAAC 57.204 47.619 0.00 0.00 0.00 2.01
151 152 3.093814 TGCCCTCTCGTATCACTTAACA 58.906 45.455 0.00 0.00 0.00 2.41
218 219 3.812156 TCCCAATGTAGTACACCATCG 57.188 47.619 4.80 0.00 0.00 3.84
236 241 7.119262 ACACCATCGGTATATTAAGCATAAAGC 59.881 37.037 0.00 0.00 37.64 3.51
251 256 4.726876 GCATAAAGCAGCGTACACTAAACC 60.727 45.833 0.00 0.00 44.79 3.27
355 361 1.517257 CTCTCCGTAAGTGCGCCTG 60.517 63.158 4.18 0.00 0.00 4.85
376 676 5.519206 CCTGTGCTTAATTAACGACTAGGTC 59.481 44.000 0.00 0.00 0.00 3.85
378 678 6.097356 TGTGCTTAATTAACGACTAGGTCAG 58.903 40.000 0.00 0.00 32.09 3.51
451 807 2.184579 GAGGTAGCACTGTCCGCC 59.815 66.667 0.00 0.00 0.00 6.13
477 837 1.652012 CCTCTCGCTAGCTTCTCCG 59.348 63.158 13.93 0.00 0.00 4.63
514 936 1.135315 GCACGCACGCATTGATCTT 59.865 52.632 0.00 0.00 0.00 2.40
515 937 0.373370 GCACGCACGCATTGATCTTA 59.627 50.000 0.00 0.00 0.00 2.10
516 938 1.593070 GCACGCACGCATTGATCTTAG 60.593 52.381 0.00 0.00 0.00 2.18
517 939 0.652592 ACGCACGCATTGATCTTAGC 59.347 50.000 0.00 0.00 0.00 3.09
518 940 0.933097 CGCACGCATTGATCTTAGCT 59.067 50.000 0.00 0.00 0.00 3.32
519 941 1.328680 CGCACGCATTGATCTTAGCTT 59.671 47.619 0.00 0.00 0.00 3.74
560 982 0.512952 CTGTGCTGTGTTTACTCGCC 59.487 55.000 0.00 0.00 0.00 5.54
594 3694 1.519408 TCGCACTTTGCTCTTTACCC 58.481 50.000 0.00 0.00 42.25 3.69
595 3695 0.521735 CGCACTTTGCTCTTTACCCC 59.478 55.000 0.00 0.00 42.25 4.95
596 3696 0.888619 GCACTTTGCTCTTTACCCCC 59.111 55.000 0.00 0.00 40.96 5.40
597 3697 1.165270 CACTTTGCTCTTTACCCCCG 58.835 55.000 0.00 0.00 0.00 5.73
602 3722 2.499685 CTCTTTACCCCCGAGCCG 59.500 66.667 0.00 0.00 0.00 5.52
708 3833 1.957695 CTCTTGCAGCAGCGTGACA 60.958 57.895 0.00 0.00 46.23 3.58
709 3834 1.898459 CTCTTGCAGCAGCGTGACAG 61.898 60.000 0.00 0.00 46.23 3.51
710 3835 2.962827 CTTGCAGCAGCGTGACAGG 61.963 63.158 0.00 0.00 46.23 4.00
711 3836 3.459148 TTGCAGCAGCGTGACAGGA 62.459 57.895 0.00 0.00 46.23 3.86
784 3909 4.596585 CCCACCACCCAACGGCTT 62.597 66.667 0.00 0.00 0.00 4.35
887 4023 0.388134 CACCTATATAACGCGCGCCT 60.388 55.000 32.58 20.39 0.00 5.52
942 4078 2.580867 CGGCGAGCTCAGTACAGC 60.581 66.667 15.40 7.52 39.99 4.40
947 4083 0.242286 CGAGCTCAGTACAGCACAGT 59.758 55.000 15.40 0.00 42.40 3.55
1018 4163 0.179004 AATGGCGTGGTGGAAGAACA 60.179 50.000 0.00 0.00 0.00 3.18
1221 4374 2.479782 CGCGCGCATTTGTTCTTCG 61.480 57.895 32.61 5.79 0.00 3.79
1234 4387 6.397831 TTTGTTCTTCGGTGATTATGTACG 57.602 37.500 0.00 0.00 0.00 3.67
1236 4389 5.337554 TGTTCTTCGGTGATTATGTACGAG 58.662 41.667 0.00 0.00 34.85 4.18
1238 4391 6.093909 TGTTCTTCGGTGATTATGTACGAGTA 59.906 38.462 0.00 0.00 34.85 2.59
1239 4392 6.052840 TCTTCGGTGATTATGTACGAGTAC 57.947 41.667 6.46 6.46 34.85 2.73
1240 4393 4.818534 TCGGTGATTATGTACGAGTACC 57.181 45.455 10.48 0.00 35.26 3.34
1241 4394 4.454678 TCGGTGATTATGTACGAGTACCT 58.545 43.478 10.48 4.02 35.26 3.08
1242 4395 4.512944 TCGGTGATTATGTACGAGTACCTC 59.487 45.833 10.48 4.00 35.26 3.85
1243 4396 4.514441 CGGTGATTATGTACGAGTACCTCT 59.486 45.833 10.48 0.00 35.26 3.69
1249 4402 8.404000 TGATTATGTACGAGTACCTCTTCTTTC 58.596 37.037 10.48 0.00 35.26 2.62
1259 4412 1.012841 CTCTTCTTTCGCTGATGGCC 58.987 55.000 0.00 0.00 37.74 5.36
1261 4414 0.731417 CTTCTTTCGCTGATGGCCTG 59.269 55.000 3.32 0.00 37.74 4.85
1262 4415 0.324614 TTCTTTCGCTGATGGCCTGA 59.675 50.000 3.32 0.00 37.74 3.86
1263 4416 0.107993 TCTTTCGCTGATGGCCTGAG 60.108 55.000 3.32 0.00 37.74 3.35
1265 4418 2.467993 TTTCGCTGATGGCCTGAGCA 62.468 55.000 17.75 1.80 42.56 4.26
1312 4465 1.366854 GGGATTCGCGTCCAAGAACC 61.367 60.000 16.63 5.03 40.17 3.62
1329 4482 2.619362 CCGGTTCTTGTACGGCAAA 58.381 52.632 0.00 0.00 41.23 3.68
1425 4578 3.698820 GCCTTGCTTTGCCCCCTG 61.699 66.667 0.00 0.00 0.00 4.45
1426 4579 2.203684 CCTTGCTTTGCCCCCTGT 60.204 61.111 0.00 0.00 0.00 4.00
1428 4581 0.541764 CCTTGCTTTGCCCCCTGTTA 60.542 55.000 0.00 0.00 0.00 2.41
1431 4585 0.539438 TGCTTTGCCCCCTGTTACTG 60.539 55.000 0.00 0.00 0.00 2.74
1441 4595 1.798813 CCCTGTTACTGTTCGTCTTGC 59.201 52.381 0.00 0.00 0.00 4.01
1443 4597 1.455786 CTGTTACTGTTCGTCTTGCCG 59.544 52.381 0.00 0.00 0.00 5.69
1461 4615 1.010419 CGTTGCCATTTTCAGCTGCC 61.010 55.000 9.47 0.00 0.00 4.85
1467 4621 0.169672 CATTTTCAGCTGCCCGTGAG 59.830 55.000 9.47 0.00 0.00 3.51
1523 4677 6.913170 TCATTCTGCATTAGGAAACAAGAAC 58.087 36.000 0.00 0.00 0.00 3.01
1536 4690 5.632347 GGAAACAAGAACATGCATCTTTCAG 59.368 40.000 16.43 11.81 34.99 3.02
1696 4872 5.643379 TCAGCAACAGAACAACTTTCTTT 57.357 34.783 0.00 0.00 0.00 2.52
1738 4918 7.599171 ACAAAATAACCCTGAAAGATTTACCG 58.401 34.615 0.00 0.00 34.07 4.02
1741 4921 1.340697 ACCCTGAAAGATTTACCGCCC 60.341 52.381 0.00 0.00 34.07 6.13
1751 4931 3.518303 AGATTTACCGCCCTTGAGTTACT 59.482 43.478 0.00 0.00 0.00 2.24
1752 4932 2.754946 TTACCGCCCTTGAGTTACTG 57.245 50.000 0.00 0.00 0.00 2.74
1755 4935 0.535335 CCGCCCTTGAGTTACTGCTA 59.465 55.000 0.00 0.00 0.00 3.49
1756 4936 1.471676 CCGCCCTTGAGTTACTGCTAG 60.472 57.143 0.00 0.00 0.00 3.42
1758 4938 2.622436 GCCCTTGAGTTACTGCTAGTG 58.378 52.381 0.00 0.00 0.00 2.74
1759 4939 2.622436 CCCTTGAGTTACTGCTAGTGC 58.378 52.381 0.00 0.00 40.20 4.40
1760 4940 2.234908 CCCTTGAGTTACTGCTAGTGCT 59.765 50.000 0.00 0.00 40.48 4.40
1763 4943 5.479306 CCTTGAGTTACTGCTAGTGCTTAA 58.521 41.667 0.00 0.00 40.48 1.85
1774 4960 4.094887 TGCTAGTGCTTAATTAGTGCTTGC 59.905 41.667 11.88 9.45 40.48 4.01
1775 4961 4.333926 GCTAGTGCTTAATTAGTGCTTGCT 59.666 41.667 11.88 9.94 36.03 3.91
1776 4962 5.163713 GCTAGTGCTTAATTAGTGCTTGCTT 60.164 40.000 11.88 0.00 36.03 3.91
1778 4964 4.761739 AGTGCTTAATTAGTGCTTGCTTGA 59.238 37.500 11.88 0.00 0.00 3.02
1779 4965 4.853743 GTGCTTAATTAGTGCTTGCTTGAC 59.146 41.667 11.88 0.29 0.00 3.18
1780 4966 4.091424 GCTTAATTAGTGCTTGCTTGACG 58.909 43.478 5.60 0.00 0.00 4.35
1781 4967 4.651994 CTTAATTAGTGCTTGCTTGACGG 58.348 43.478 0.00 0.00 0.00 4.79
1782 4968 2.185004 ATTAGTGCTTGCTTGACGGT 57.815 45.000 0.00 0.00 0.00 4.83
1783 4969 2.823924 TTAGTGCTTGCTTGACGGTA 57.176 45.000 0.00 0.00 0.00 4.02
1784 4970 2.074547 TAGTGCTTGCTTGACGGTAC 57.925 50.000 0.00 0.00 0.00 3.34
1785 4971 0.393077 AGTGCTTGCTTGACGGTACT 59.607 50.000 0.00 0.00 0.00 2.73
1786 4972 0.512952 GTGCTTGCTTGACGGTACTG 59.487 55.000 0.00 0.00 0.00 2.74
1794 4980 1.732259 CTTGACGGTACTGTTGCATCC 59.268 52.381 9.15 0.00 0.00 3.51
1809 4995 2.565391 TGCATCCTCAACCTCGAGTAAA 59.435 45.455 12.31 0.00 0.00 2.01
1810 4996 3.197766 TGCATCCTCAACCTCGAGTAAAT 59.802 43.478 12.31 0.00 0.00 1.40
1811 4997 3.557595 GCATCCTCAACCTCGAGTAAATG 59.442 47.826 12.31 4.79 0.00 2.32
1812 4998 4.759782 CATCCTCAACCTCGAGTAAATGT 58.240 43.478 12.31 0.00 0.00 2.71
1813 4999 5.681437 GCATCCTCAACCTCGAGTAAATGTA 60.681 44.000 12.31 0.00 0.00 2.29
1814 5000 5.988310 TCCTCAACCTCGAGTAAATGTAA 57.012 39.130 12.31 0.00 0.00 2.41
1815 5001 5.962433 TCCTCAACCTCGAGTAAATGTAAG 58.038 41.667 12.31 3.46 0.00 2.34
1816 5002 5.713389 TCCTCAACCTCGAGTAAATGTAAGA 59.287 40.000 12.31 3.25 0.00 2.10
1817 5003 6.037098 CCTCAACCTCGAGTAAATGTAAGAG 58.963 44.000 12.31 11.50 0.00 2.85
1819 5005 5.713389 TCAACCTCGAGTAAATGTAAGAGGA 59.287 40.000 12.31 0.00 45.88 3.71
1830 5016 9.384764 AGTAAATGTAAGAGGACTAATCTTTGC 57.615 33.333 0.00 0.00 38.05 3.68
1831 5017 9.162764 GTAAATGTAAGAGGACTAATCTTTGCA 57.837 33.333 0.00 0.00 38.05 4.08
1835 5021 5.573337 AAGAGGACTAATCTTTGCAATGC 57.427 39.130 0.00 0.00 33.16 3.56
2132 5335 2.835431 CCCCAACAACGCCACCAA 60.835 61.111 0.00 0.00 0.00 3.67
2134 5337 2.418910 CCCAACAACGCCACCAACA 61.419 57.895 0.00 0.00 0.00 3.33
2581 5784 6.071320 GCCTCCATGGGAATCTTTATTTAGT 58.929 40.000 13.02 0.00 36.00 2.24
2645 5849 4.527564 CTGCTCGTTTCAGTTTCGATTTT 58.472 39.130 0.00 0.00 33.26 1.82
2687 5891 2.094575 TGAACTTCGACCGTGTTTGTTG 59.905 45.455 0.00 0.00 0.00 3.33
2768 5979 5.413833 TGGAAATGATGCTCTTTTCTCTGTC 59.586 40.000 16.53 7.18 39.24 3.51
2771 5982 2.909006 TGATGCTCTTTTCTCTGTCCCT 59.091 45.455 0.00 0.00 0.00 4.20
2780 5991 3.507162 TTCTCTGTCCCTCAATGCAAA 57.493 42.857 0.00 0.00 0.00 3.68
2782 5993 3.149196 TCTCTGTCCCTCAATGCAAAAC 58.851 45.455 0.00 0.00 0.00 2.43
2795 6006 0.316689 GCAAAACCTGTTCGTCCGTG 60.317 55.000 0.00 0.00 0.00 4.94
2798 6009 0.395312 AAACCTGTTCGTCCGTGGAT 59.605 50.000 0.00 0.00 0.00 3.41
2808 6022 2.803956 TCGTCCGTGGATTTTCTTTGAC 59.196 45.455 0.00 0.00 0.00 3.18
2810 6024 3.188460 CGTCCGTGGATTTTCTTTGACAT 59.812 43.478 0.00 0.00 0.00 3.06
2821 6035 3.694043 TCTTTGACATCCGTTCCATCA 57.306 42.857 0.00 0.00 0.00 3.07
2833 6055 1.331756 GTTCCATCATCGAGCGCAAAT 59.668 47.619 11.47 0.00 0.00 2.32
2834 6056 1.667236 TCCATCATCGAGCGCAAATT 58.333 45.000 11.47 0.00 0.00 1.82
2860 6082 2.348872 GCCATTGATACTGCGTTCATCG 60.349 50.000 0.00 0.00 43.12 3.84
2884 6106 6.203530 CGTCTATGCAATGTTCCATGTCTAAT 59.796 38.462 0.00 0.00 0.00 1.73
2898 6120 2.371841 TGTCTAATGCACTGTGGTCCTT 59.628 45.455 10.21 0.00 0.00 3.36
2937 6165 6.833041 TCCAGTACACACTTTAATCAAAGGA 58.167 36.000 0.00 0.00 44.63 3.36
2938 6166 6.934645 TCCAGTACACACTTTAATCAAAGGAG 59.065 38.462 0.00 0.00 44.63 3.69
2939 6167 6.710744 CCAGTACACACTTTAATCAAAGGAGT 59.289 38.462 0.00 0.00 44.63 3.85
2940 6168 7.876068 CCAGTACACACTTTAATCAAAGGAGTA 59.124 37.037 0.00 0.00 44.63 2.59
2941 6169 8.926710 CAGTACACACTTTAATCAAAGGAGTAG 58.073 37.037 0.00 0.00 44.63 2.57
2942 6170 8.867097 AGTACACACTTTAATCAAAGGAGTAGA 58.133 33.333 0.00 0.00 44.63 2.59
2943 6171 9.654663 GTACACACTTTAATCAAAGGAGTAGAT 57.345 33.333 0.00 0.00 44.63 1.98
2944 6172 8.779354 ACACACTTTAATCAAAGGAGTAGATC 57.221 34.615 0.00 0.00 44.63 2.75
2955 6183 6.609212 TCAAAGGAGTAGATCAGCTCAGTAAT 59.391 38.462 15.37 0.00 33.66 1.89
2956 6184 7.780271 TCAAAGGAGTAGATCAGCTCAGTAATA 59.220 37.037 15.37 0.00 33.66 0.98
2958 6186 7.759489 AGGAGTAGATCAGCTCAGTAATAAG 57.241 40.000 15.37 0.00 33.66 1.73
2959 6187 7.294584 AGGAGTAGATCAGCTCAGTAATAAGT 58.705 38.462 15.37 0.00 33.66 2.24
2960 6188 7.230510 AGGAGTAGATCAGCTCAGTAATAAGTG 59.769 40.741 15.37 0.00 33.66 3.16
2980 6208 4.652421 AGTGGAAGGTACAGTTCAGTAACA 59.348 41.667 8.89 0.00 38.12 2.41
3000 6228 1.648467 GGTGGTCCATTTGAGCGAGC 61.648 60.000 0.00 0.00 44.62 5.03
3085 6321 3.451141 GAGCTCACAGGTCAATAGAGG 57.549 52.381 9.40 0.00 42.03 3.69
3110 6346 1.913778 TTGGATGCATCAGCTTGTGT 58.086 45.000 27.25 0.00 42.74 3.72
3111 6347 2.785540 TGGATGCATCAGCTTGTGTA 57.214 45.000 27.25 0.21 42.74 2.90
3112 6348 3.070476 TGGATGCATCAGCTTGTGTAA 57.930 42.857 27.25 0.00 42.74 2.41
3156 6392 4.342665 CGAGCTCCCTCTATCTTTTTACCT 59.657 45.833 8.47 0.00 35.90 3.08
3192 6430 5.012046 TGACTCTATCTTTTCACCTTGCTGA 59.988 40.000 0.00 0.00 0.00 4.26
3193 6431 6.059787 ACTCTATCTTTTCACCTTGCTGAT 57.940 37.500 0.00 0.00 0.00 2.90
3194 6432 6.112058 ACTCTATCTTTTCACCTTGCTGATC 58.888 40.000 0.00 0.00 0.00 2.92
3202 6440 2.093288 TCACCTTGCTGATCCTCATGAC 60.093 50.000 0.00 0.00 0.00 3.06
3315 6553 0.319727 CTGAGATGATGGGAGCTCGC 60.320 60.000 23.06 23.06 30.60 5.03
3316 6554 1.044790 TGAGATGATGGGAGCTCGCA 61.045 55.000 32.47 32.47 43.04 5.10
3317 6555 0.319727 GAGATGATGGGAGCTCGCAG 60.320 60.000 33.13 0.00 42.14 5.18
3318 6556 1.301558 GATGATGGGAGCTCGCAGG 60.302 63.158 33.13 0.00 42.14 4.85
3319 6557 2.728443 GATGATGGGAGCTCGCAGGG 62.728 65.000 33.13 0.00 42.14 4.45
3320 6558 4.925861 GATGGGAGCTCGCAGGGC 62.926 72.222 33.13 22.43 42.14 5.19
3333 6571 2.529389 AGGGCCGGTCCTGAGTTT 60.529 61.111 31.20 0.00 35.47 2.66
3334 6572 2.154074 AGGGCCGGTCCTGAGTTTT 61.154 57.895 31.20 0.00 35.47 2.43
3335 6573 1.228459 GGGCCGGTCCTGAGTTTTT 60.228 57.895 20.78 0.00 34.39 1.94
3336 6574 1.524008 GGGCCGGTCCTGAGTTTTTG 61.524 60.000 20.78 0.00 34.39 2.44
3337 6575 1.524008 GGCCGGTCCTGAGTTTTTGG 61.524 60.000 1.90 0.00 0.00 3.28
3338 6576 1.524008 GCCGGTCCTGAGTTTTTGGG 61.524 60.000 1.90 0.00 0.00 4.12
3339 6577 0.893727 CCGGTCCTGAGTTTTTGGGG 60.894 60.000 0.00 0.00 0.00 4.96
3340 6578 1.524008 CGGTCCTGAGTTTTTGGGGC 61.524 60.000 0.00 0.00 0.00 5.80
3341 6579 1.185618 GGTCCTGAGTTTTTGGGGCC 61.186 60.000 0.00 0.00 36.41 5.80
3342 6580 1.155155 TCCTGAGTTTTTGGGGCCC 59.845 57.895 18.17 18.17 0.00 5.80
3343 6581 2.275380 CCTGAGTTTTTGGGGCCCG 61.275 63.158 19.83 0.00 0.00 6.13
3344 6582 2.203567 TGAGTTTTTGGGGCCCGG 60.204 61.111 19.83 0.00 0.00 5.73
3345 6583 2.994995 GAGTTTTTGGGGCCCGGG 60.995 66.667 19.09 19.09 0.00 5.73
3346 6584 4.631740 AGTTTTTGGGGCCCGGGG 62.632 66.667 25.28 9.31 0.00 5.73
3357 6595 4.338710 CCCGGGGCGAACCTTCAA 62.339 66.667 14.71 0.00 40.03 2.69
3358 6596 2.281900 CCGGGGCGAACCTTCAAA 60.282 61.111 0.00 0.00 40.03 2.69
3359 6597 1.677633 CCGGGGCGAACCTTCAAAT 60.678 57.895 0.00 0.00 40.03 2.32
3360 6598 0.393267 CCGGGGCGAACCTTCAAATA 60.393 55.000 0.00 0.00 40.03 1.40
3361 6599 1.675552 CGGGGCGAACCTTCAAATAT 58.324 50.000 0.00 0.00 40.03 1.28
3362 6600 2.485835 CCGGGGCGAACCTTCAAATATA 60.486 50.000 0.00 0.00 40.03 0.86
3363 6601 2.546789 CGGGGCGAACCTTCAAATATAC 59.453 50.000 0.00 0.00 40.03 1.47
3364 6602 3.547746 GGGGCGAACCTTCAAATATACA 58.452 45.455 0.00 0.00 40.03 2.29
3365 6603 3.314357 GGGGCGAACCTTCAAATATACAC 59.686 47.826 0.00 0.00 40.03 2.90
3366 6604 3.942748 GGGCGAACCTTCAAATATACACA 59.057 43.478 0.00 0.00 35.85 3.72
3367 6605 4.578928 GGGCGAACCTTCAAATATACACAT 59.421 41.667 0.00 0.00 35.85 3.21
3368 6606 5.277828 GGGCGAACCTTCAAATATACACATC 60.278 44.000 0.00 0.00 35.85 3.06
3369 6607 5.295787 GGCGAACCTTCAAATATACACATCA 59.704 40.000 0.00 0.00 0.00 3.07
3370 6608 6.017109 GGCGAACCTTCAAATATACACATCAT 60.017 38.462 0.00 0.00 0.00 2.45
3371 6609 7.172532 GGCGAACCTTCAAATATACACATCATA 59.827 37.037 0.00 0.00 0.00 2.15
3372 6610 8.223769 GCGAACCTTCAAATATACACATCATAG 58.776 37.037 0.00 0.00 0.00 2.23
3373 6611 9.261180 CGAACCTTCAAATATACACATCATAGT 57.739 33.333 0.00 0.00 0.00 2.12
3441 6679 8.851541 AACATTTAAATGCATCCAAAATCAGT 57.148 26.923 24.82 0.88 40.04 3.41
3442 6680 9.941325 AACATTTAAATGCATCCAAAATCAGTA 57.059 25.926 24.82 0.00 40.04 2.74
3505 6743 6.749923 AAATCTTCTAACACTCCTTGATGC 57.250 37.500 0.00 0.00 0.00 3.91
3506 6744 4.890158 TCTTCTAACACTCCTTGATGCA 57.110 40.909 0.00 0.00 0.00 3.96
3507 6745 5.227569 TCTTCTAACACTCCTTGATGCAA 57.772 39.130 0.00 0.00 0.00 4.08
3508 6746 5.620206 TCTTCTAACACTCCTTGATGCAAA 58.380 37.500 0.00 0.00 0.00 3.68
3509 6747 5.702670 TCTTCTAACACTCCTTGATGCAAAG 59.297 40.000 0.00 0.00 0.00 2.77
3510 6748 4.973168 TCTAACACTCCTTGATGCAAAGT 58.027 39.130 0.00 0.00 0.00 2.66
3511 6749 4.997395 TCTAACACTCCTTGATGCAAAGTC 59.003 41.667 0.00 0.00 0.00 3.01
3512 6750 3.213206 ACACTCCTTGATGCAAAGTCA 57.787 42.857 0.00 0.00 0.00 3.41
3513 6751 2.880890 ACACTCCTTGATGCAAAGTCAC 59.119 45.455 0.00 0.00 0.00 3.67
3514 6752 3.144506 CACTCCTTGATGCAAAGTCACT 58.855 45.455 0.00 0.00 0.00 3.41
3515 6753 3.567164 CACTCCTTGATGCAAAGTCACTT 59.433 43.478 0.00 0.00 0.00 3.16
3516 6754 4.756642 CACTCCTTGATGCAAAGTCACTTA 59.243 41.667 0.00 0.00 0.00 2.24
3517 6755 5.413833 CACTCCTTGATGCAAAGTCACTTAT 59.586 40.000 0.00 0.00 0.00 1.73
3518 6756 5.413833 ACTCCTTGATGCAAAGTCACTTATG 59.586 40.000 0.00 0.00 0.00 1.90
3519 6757 5.559770 TCCTTGATGCAAAGTCACTTATGA 58.440 37.500 0.00 0.00 0.00 2.15
3520 6758 6.182627 TCCTTGATGCAAAGTCACTTATGAT 58.817 36.000 0.00 0.00 37.14 2.45
3521 6759 6.094464 TCCTTGATGCAAAGTCACTTATGATG 59.906 38.462 0.00 0.00 37.14 3.07
3522 6760 5.823209 TGATGCAAAGTCACTTATGATGG 57.177 39.130 0.00 0.00 37.14 3.51
3523 6761 4.641541 TGATGCAAAGTCACTTATGATGGG 59.358 41.667 0.00 0.00 37.14 4.00
3524 6762 3.355378 TGCAAAGTCACTTATGATGGGG 58.645 45.455 0.00 0.00 37.14 4.96
3525 6763 3.245229 TGCAAAGTCACTTATGATGGGGT 60.245 43.478 0.00 0.00 37.14 4.95
3526 6764 3.378427 GCAAAGTCACTTATGATGGGGTC 59.622 47.826 0.00 0.00 37.14 4.46
3527 6765 3.543680 AAGTCACTTATGATGGGGTCG 57.456 47.619 0.00 0.00 37.14 4.79
3528 6766 2.747177 AGTCACTTATGATGGGGTCGA 58.253 47.619 0.00 0.00 37.14 4.20
3529 6767 3.309296 AGTCACTTATGATGGGGTCGAT 58.691 45.455 0.00 0.00 37.14 3.59
3530 6768 3.070159 AGTCACTTATGATGGGGTCGATG 59.930 47.826 0.00 0.00 37.14 3.84
3531 6769 3.038280 TCACTTATGATGGGGTCGATGT 58.962 45.455 0.00 0.00 0.00 3.06
3532 6770 3.069586 TCACTTATGATGGGGTCGATGTC 59.930 47.826 0.00 0.00 0.00 3.06
3533 6771 3.038280 ACTTATGATGGGGTCGATGTCA 58.962 45.455 0.00 0.00 0.00 3.58
3534 6772 3.454447 ACTTATGATGGGGTCGATGTCAA 59.546 43.478 0.00 0.00 0.00 3.18
3535 6773 4.103153 ACTTATGATGGGGTCGATGTCAAT 59.897 41.667 0.00 0.00 0.00 2.57
3536 6774 2.620251 TGATGGGGTCGATGTCAATC 57.380 50.000 0.00 0.00 0.00 2.67
3537 6775 2.118679 TGATGGGGTCGATGTCAATCT 58.881 47.619 0.00 0.00 0.00 2.40
3538 6776 2.103094 TGATGGGGTCGATGTCAATCTC 59.897 50.000 0.00 0.00 0.00 2.75
3539 6777 1.567357 TGGGGTCGATGTCAATCTCA 58.433 50.000 0.00 0.00 0.00 3.27
3540 6778 2.118679 TGGGGTCGATGTCAATCTCAT 58.881 47.619 0.00 0.00 0.00 2.90
3541 6779 2.103094 TGGGGTCGATGTCAATCTCATC 59.897 50.000 0.00 0.00 38.49 2.92
3542 6780 2.548920 GGGGTCGATGTCAATCTCATCC 60.549 54.545 0.00 0.00 38.60 3.51
3543 6781 2.103094 GGGTCGATGTCAATCTCATCCA 59.897 50.000 0.00 0.00 38.60 3.41
3544 6782 3.244353 GGGTCGATGTCAATCTCATCCAT 60.244 47.826 0.00 0.00 38.60 3.41
3545 6783 4.384056 GGTCGATGTCAATCTCATCCATT 58.616 43.478 0.00 0.00 38.60 3.16
3546 6784 5.511373 GGGTCGATGTCAATCTCATCCATTA 60.511 44.000 0.00 0.00 38.60 1.90
3547 6785 5.991606 GGTCGATGTCAATCTCATCCATTAA 59.008 40.000 0.00 0.00 38.60 1.40
3548 6786 6.652481 GGTCGATGTCAATCTCATCCATTAAT 59.348 38.462 0.00 0.00 38.60 1.40
3549 6787 7.173907 GGTCGATGTCAATCTCATCCATTAATT 59.826 37.037 0.00 0.00 38.60 1.40
3550 6788 8.562892 GTCGATGTCAATCTCATCCATTAATTT 58.437 33.333 0.00 0.00 38.60 1.82
3551 6789 8.777413 TCGATGTCAATCTCATCCATTAATTTC 58.223 33.333 0.00 0.00 38.60 2.17
3552 6790 8.781196 CGATGTCAATCTCATCCATTAATTTCT 58.219 33.333 0.00 0.00 38.60 2.52
3555 6793 9.690913 TGTCAATCTCATCCATTAATTTCTTCT 57.309 29.630 0.00 0.00 0.00 2.85
3557 6795 9.347240 TCAATCTCATCCATTAATTTCTTCTCC 57.653 33.333 0.00 0.00 0.00 3.71
3558 6796 9.128404 CAATCTCATCCATTAATTTCTTCTCCA 57.872 33.333 0.00 0.00 0.00 3.86
3559 6797 9.878737 AATCTCATCCATTAATTTCTTCTCCAT 57.121 29.630 0.00 0.00 0.00 3.41
3560 6798 8.687292 TCTCATCCATTAATTTCTTCTCCATG 57.313 34.615 0.00 0.00 0.00 3.66
3561 6799 7.230108 TCTCATCCATTAATTTCTTCTCCATGC 59.770 37.037 0.00 0.00 0.00 4.06
3562 6800 6.834969 TCATCCATTAATTTCTTCTCCATGCA 59.165 34.615 0.00 0.00 0.00 3.96
3563 6801 7.507956 TCATCCATTAATTTCTTCTCCATGCAT 59.492 33.333 0.00 0.00 0.00 3.96
3564 6802 8.799367 CATCCATTAATTTCTTCTCCATGCATA 58.201 33.333 0.00 0.00 0.00 3.14
3565 6803 8.765488 TCCATTAATTTCTTCTCCATGCATAA 57.235 30.769 0.00 0.00 0.00 1.90
3566 6804 9.370930 TCCATTAATTTCTTCTCCATGCATAAT 57.629 29.630 0.00 0.00 0.00 1.28
3567 6805 9.419297 CCATTAATTTCTTCTCCATGCATAATG 57.581 33.333 0.00 0.94 35.89 1.90
3568 6806 9.976511 CATTAATTTCTTCTCCATGCATAATGT 57.023 29.630 0.00 0.00 34.11 2.71
3571 6809 6.624352 TTTCTTCTCCATGCATAATGTAGC 57.376 37.500 0.00 0.00 34.11 3.58
3572 6810 4.645535 TCTTCTCCATGCATAATGTAGCC 58.354 43.478 0.00 0.00 34.11 3.93
3573 6811 4.102996 TCTTCTCCATGCATAATGTAGCCA 59.897 41.667 0.00 0.00 34.11 4.75
3574 6812 4.436113 TCTCCATGCATAATGTAGCCAA 57.564 40.909 0.00 0.00 34.11 4.52
3575 6813 4.790937 TCTCCATGCATAATGTAGCCAAA 58.209 39.130 0.00 0.00 34.11 3.28
3576 6814 4.580167 TCTCCATGCATAATGTAGCCAAAC 59.420 41.667 0.00 0.00 34.11 2.93
3577 6815 3.636300 TCCATGCATAATGTAGCCAAACC 59.364 43.478 0.00 0.00 34.11 3.27
3578 6816 3.384146 CCATGCATAATGTAGCCAAACCA 59.616 43.478 0.00 0.00 34.11 3.67
3579 6817 4.039488 CCATGCATAATGTAGCCAAACCAT 59.961 41.667 0.00 0.00 34.11 3.55
3580 6818 5.453621 CCATGCATAATGTAGCCAAACCATT 60.454 40.000 0.00 0.00 34.11 3.16
3581 6819 5.674052 TGCATAATGTAGCCAAACCATTT 57.326 34.783 0.00 0.00 31.63 2.32
3582 6820 6.782082 TGCATAATGTAGCCAAACCATTTA 57.218 33.333 0.00 0.00 31.63 1.40
3583 6821 7.175347 TGCATAATGTAGCCAAACCATTTAA 57.825 32.000 0.00 0.00 31.63 1.52
3584 6822 7.790027 TGCATAATGTAGCCAAACCATTTAAT 58.210 30.769 0.00 0.00 31.63 1.40
3585 6823 7.925483 TGCATAATGTAGCCAAACCATTTAATC 59.075 33.333 0.00 0.00 31.63 1.75
3586 6824 8.143835 GCATAATGTAGCCAAACCATTTAATCT 58.856 33.333 0.00 0.00 31.63 2.40
3587 6825 9.683069 CATAATGTAGCCAAACCATTTAATCTC 57.317 33.333 0.00 0.00 31.63 2.75
3588 6826 7.961326 AATGTAGCCAAACCATTTAATCTCT 57.039 32.000 0.00 0.00 0.00 3.10
3589 6827 7.573968 ATGTAGCCAAACCATTTAATCTCTC 57.426 36.000 0.00 0.00 0.00 3.20
3590 6828 6.721318 TGTAGCCAAACCATTTAATCTCTCT 58.279 36.000 0.00 0.00 0.00 3.10
3591 6829 7.175104 TGTAGCCAAACCATTTAATCTCTCTT 58.825 34.615 0.00 0.00 0.00 2.85
3592 6830 6.521151 AGCCAAACCATTTAATCTCTCTTG 57.479 37.500 0.00 0.00 0.00 3.02
3593 6831 6.248433 AGCCAAACCATTTAATCTCTCTTGA 58.752 36.000 0.00 0.00 0.00 3.02
3594 6832 6.376581 AGCCAAACCATTTAATCTCTCTTGAG 59.623 38.462 0.00 0.00 41.51 3.02
3595 6833 6.151817 GCCAAACCATTTAATCTCTCTTGAGT 59.848 38.462 0.00 0.00 40.98 3.41
3596 6834 7.309438 GCCAAACCATTTAATCTCTCTTGAGTT 60.309 37.037 0.00 0.00 40.98 3.01
3597 6835 9.231297 CCAAACCATTTAATCTCTCTTGAGTTA 57.769 33.333 0.00 0.00 40.98 2.24
3601 6839 9.965902 ACCATTTAATCTCTCTTGAGTTATTGT 57.034 29.630 0.00 0.00 40.98 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.674525 TGATGTTTAATAGTGCTCCTCCAG 58.325 41.667 0.00 0.00 0.00 3.86
1 2 5.692115 TGATGTTTAATAGTGCTCCTCCA 57.308 39.130 0.00 0.00 0.00 3.86
2 3 5.471456 CCATGATGTTTAATAGTGCTCCTCC 59.529 44.000 0.00 0.00 0.00 4.30
3 4 5.471456 CCCATGATGTTTAATAGTGCTCCTC 59.529 44.000 0.00 0.00 0.00 3.71
4 5 5.380043 CCCATGATGTTTAATAGTGCTCCT 58.620 41.667 0.00 0.00 0.00 3.69
5 6 4.520492 CCCCATGATGTTTAATAGTGCTCC 59.480 45.833 0.00 0.00 0.00 4.70
6 7 5.376625 TCCCCATGATGTTTAATAGTGCTC 58.623 41.667 0.00 0.00 0.00 4.26
7 8 5.387113 TCCCCATGATGTTTAATAGTGCT 57.613 39.130 0.00 0.00 0.00 4.40
8 9 6.463995 TTTCCCCATGATGTTTAATAGTGC 57.536 37.500 0.00 0.00 0.00 4.40
9 10 8.010733 ACATTTCCCCATGATGTTTAATAGTG 57.989 34.615 0.00 0.00 30.22 2.74
10 11 9.131791 GTACATTTCCCCATGATGTTTAATAGT 57.868 33.333 2.67 0.00 35.72 2.12
11 12 9.354673 AGTACATTTCCCCATGATGTTTAATAG 57.645 33.333 2.67 0.00 35.72 1.73
12 13 9.349713 GAGTACATTTCCCCATGATGTTTAATA 57.650 33.333 2.67 0.00 35.72 0.98
13 14 7.287696 GGAGTACATTTCCCCATGATGTTTAAT 59.712 37.037 2.67 0.00 35.72 1.40
14 15 6.605594 GGAGTACATTTCCCCATGATGTTTAA 59.394 38.462 2.67 0.00 35.72 1.52
15 16 6.069088 AGGAGTACATTTCCCCATGATGTTTA 60.069 38.462 2.67 0.00 35.72 2.01
16 17 4.956075 GGAGTACATTTCCCCATGATGTTT 59.044 41.667 2.67 0.00 35.72 2.83
17 18 4.230502 AGGAGTACATTTCCCCATGATGTT 59.769 41.667 2.67 0.00 35.72 2.71
18 19 3.788142 AGGAGTACATTTCCCCATGATGT 59.212 43.478 0.00 0.00 37.70 3.06
19 20 4.443978 AGGAGTACATTTCCCCATGATG 57.556 45.455 0.00 0.00 35.20 3.07
20 21 4.230502 ACAAGGAGTACATTTCCCCATGAT 59.769 41.667 0.00 0.00 35.20 2.45
21 22 3.591527 ACAAGGAGTACATTTCCCCATGA 59.408 43.478 0.00 0.00 35.20 3.07
22 23 3.968265 ACAAGGAGTACATTTCCCCATG 58.032 45.455 0.00 0.00 35.20 3.66
34 35 7.959175 ACAGAAACTACAATGTACAAGGAGTA 58.041 34.615 14.79 7.98 0.00 2.59
35 36 6.827727 ACAGAAACTACAATGTACAAGGAGT 58.172 36.000 10.00 10.00 0.00 3.85
36 37 8.304596 TCTACAGAAACTACAATGTACAAGGAG 58.695 37.037 0.00 4.40 0.00 3.69
37 38 8.185506 TCTACAGAAACTACAATGTACAAGGA 57.814 34.615 0.00 0.00 0.00 3.36
38 39 8.088981 ACTCTACAGAAACTACAATGTACAAGG 58.911 37.037 0.00 0.00 0.00 3.61
40 41 9.903682 GTACTCTACAGAAACTACAATGTACAA 57.096 33.333 0.00 0.00 0.00 2.41
41 42 9.293404 AGTACTCTACAGAAACTACAATGTACA 57.707 33.333 0.00 0.00 0.00 2.90
48 49 9.578576 TCCTTAAAGTACTCTACAGAAACTACA 57.421 33.333 0.00 0.00 0.00 2.74
49 50 9.838975 GTCCTTAAAGTACTCTACAGAAACTAC 57.161 37.037 0.00 0.00 0.00 2.73
50 51 9.804977 AGTCCTTAAAGTACTCTACAGAAACTA 57.195 33.333 0.00 0.00 0.00 2.24
51 52 8.709272 AGTCCTTAAAGTACTCTACAGAAACT 57.291 34.615 0.00 0.00 0.00 2.66
53 54 9.804977 ACTAGTCCTTAAAGTACTCTACAGAAA 57.195 33.333 0.00 0.00 0.00 2.52
55 56 9.883142 GTACTAGTCCTTAAAGTACTCTACAGA 57.117 37.037 0.00 0.00 41.43 3.41
77 78 8.689972 ACGTTGCCAAATATACTTAGTAGTACT 58.310 33.333 8.14 8.14 39.59 2.73
78 79 8.749499 CACGTTGCCAAATATACTTAGTAGTAC 58.251 37.037 0.00 0.00 39.59 2.73
79 80 8.685427 TCACGTTGCCAAATATACTTAGTAGTA 58.315 33.333 0.00 0.00 40.96 1.82
80 81 7.490402 GTCACGTTGCCAAATATACTTAGTAGT 59.510 37.037 0.00 0.00 38.44 2.73
81 82 7.490079 TGTCACGTTGCCAAATATACTTAGTAG 59.510 37.037 0.00 0.00 0.00 2.57
82 83 7.276218 GTGTCACGTTGCCAAATATACTTAGTA 59.724 37.037 0.00 0.00 0.00 1.82
83 84 6.091713 GTGTCACGTTGCCAAATATACTTAGT 59.908 38.462 0.00 0.00 0.00 2.24
84 85 6.312918 AGTGTCACGTTGCCAAATATACTTAG 59.687 38.462 0.00 0.00 0.00 2.18
85 86 6.167685 AGTGTCACGTTGCCAAATATACTTA 58.832 36.000 0.00 0.00 0.00 2.24
86 87 5.001232 AGTGTCACGTTGCCAAATATACTT 58.999 37.500 0.00 0.00 0.00 2.24
87 88 4.575885 AGTGTCACGTTGCCAAATATACT 58.424 39.130 0.00 0.00 0.00 2.12
88 89 4.939509 AGTGTCACGTTGCCAAATATAC 57.060 40.909 0.00 0.00 0.00 1.47
89 90 5.950758 AAAGTGTCACGTTGCCAAATATA 57.049 34.783 3.17 0.00 0.00 0.86
90 91 4.846779 AAAGTGTCACGTTGCCAAATAT 57.153 36.364 3.17 0.00 0.00 1.28
91 92 4.336993 AGAAAAGTGTCACGTTGCCAAATA 59.663 37.500 4.86 0.00 0.00 1.40
92 93 3.130340 AGAAAAGTGTCACGTTGCCAAAT 59.870 39.130 4.86 0.00 0.00 2.32
93 94 2.490115 AGAAAAGTGTCACGTTGCCAAA 59.510 40.909 4.86 0.00 0.00 3.28
94 95 2.088423 AGAAAAGTGTCACGTTGCCAA 58.912 42.857 4.86 0.00 0.00 4.52
95 96 1.745232 AGAAAAGTGTCACGTTGCCA 58.255 45.000 4.86 0.00 0.00 4.92
96 97 2.096819 TGAAGAAAAGTGTCACGTTGCC 59.903 45.455 4.86 1.33 0.00 4.52
97 98 3.181510 ACTGAAGAAAAGTGTCACGTTGC 60.182 43.478 4.86 3.18 0.00 4.17
98 99 4.600012 ACTGAAGAAAAGTGTCACGTTG 57.400 40.909 4.86 0.00 0.00 4.10
99 100 6.370718 ACTTTACTGAAGAAAAGTGTCACGTT 59.629 34.615 0.00 0.00 42.72 3.99
100 101 5.873164 ACTTTACTGAAGAAAAGTGTCACGT 59.127 36.000 0.00 0.00 42.72 4.49
101 102 6.345920 ACTTTACTGAAGAAAAGTGTCACG 57.654 37.500 0.00 0.00 42.72 4.35
102 103 8.644318 TCTACTTTACTGAAGAAAAGTGTCAC 57.356 34.615 9.98 0.00 43.77 3.67
103 104 8.692710 TCTCTACTTTACTGAAGAAAAGTGTCA 58.307 33.333 9.98 0.00 43.77 3.58
104 105 9.699703 ATCTCTACTTTACTGAAGAAAAGTGTC 57.300 33.333 9.98 0.00 43.77 3.67
105 106 9.482627 CATCTCTACTTTACTGAAGAAAAGTGT 57.517 33.333 9.98 0.00 43.77 3.55
106 107 8.439286 GCATCTCTACTTTACTGAAGAAAAGTG 58.561 37.037 9.98 2.36 43.77 3.16
107 108 7.604545 GGCATCTCTACTTTACTGAAGAAAAGT 59.395 37.037 5.83 5.83 45.40 2.66
108 109 7.065204 GGGCATCTCTACTTTACTGAAGAAAAG 59.935 40.741 0.00 0.00 38.77 2.27
109 110 6.879458 GGGCATCTCTACTTTACTGAAGAAAA 59.121 38.462 0.00 0.00 38.77 2.29
110 111 6.213600 AGGGCATCTCTACTTTACTGAAGAAA 59.786 38.462 0.00 0.00 38.77 2.52
111 112 5.721960 AGGGCATCTCTACTTTACTGAAGAA 59.278 40.000 0.00 0.00 38.77 2.52
112 113 5.273208 AGGGCATCTCTACTTTACTGAAGA 58.727 41.667 0.00 0.00 38.77 2.87
113 114 5.596845 GAGGGCATCTCTACTTTACTGAAG 58.403 45.833 0.00 0.00 39.38 3.02
114 115 5.599999 GAGGGCATCTCTACTTTACTGAA 57.400 43.478 0.00 0.00 39.38 3.02
127 128 2.373335 AGTGATACGAGAGGGCATCT 57.627 50.000 0.00 0.00 42.61 2.90
128 129 4.202121 TGTTAAGTGATACGAGAGGGCATC 60.202 45.833 0.00 0.00 0.00 3.91
129 130 3.704566 TGTTAAGTGATACGAGAGGGCAT 59.295 43.478 0.00 0.00 0.00 4.40
130 131 3.093814 TGTTAAGTGATACGAGAGGGCA 58.906 45.455 0.00 0.00 0.00 5.36
131 132 3.795623 TGTTAAGTGATACGAGAGGGC 57.204 47.619 0.00 0.00 0.00 5.19
132 133 4.341235 TGGATGTTAAGTGATACGAGAGGG 59.659 45.833 0.00 0.00 0.00 4.30
133 134 5.163550 TGTGGATGTTAAGTGATACGAGAGG 60.164 44.000 0.00 0.00 0.00 3.69
134 135 5.891451 TGTGGATGTTAAGTGATACGAGAG 58.109 41.667 0.00 0.00 0.00 3.20
135 136 5.678871 GCTGTGGATGTTAAGTGATACGAGA 60.679 44.000 0.00 0.00 0.00 4.04
136 137 4.504461 GCTGTGGATGTTAAGTGATACGAG 59.496 45.833 0.00 0.00 0.00 4.18
137 138 4.159693 AGCTGTGGATGTTAAGTGATACGA 59.840 41.667 0.00 0.00 0.00 3.43
138 139 4.268644 CAGCTGTGGATGTTAAGTGATACG 59.731 45.833 5.25 0.00 0.00 3.06
139 140 5.725110 CAGCTGTGGATGTTAAGTGATAC 57.275 43.478 5.25 0.00 0.00 2.24
206 207 7.764141 TGCTTAATATACCGATGGTGTACTA 57.236 36.000 0.00 0.00 36.19 1.82
218 219 6.481954 ACGCTGCTTTATGCTTAATATACC 57.518 37.500 0.00 0.00 43.37 2.73
236 241 1.356527 GCCGGGTTTAGTGTACGCTG 61.357 60.000 19.20 1.32 0.00 5.18
239 244 0.037975 ACTGCCGGGTTTAGTGTACG 60.038 55.000 2.18 0.00 0.00 3.67
355 361 5.519206 CCTGACCTAGTCGTTAATTAAGCAC 59.481 44.000 0.00 0.00 34.95 4.40
376 676 4.082190 TCACTAGTGCTAAGTGCTAACCTG 60.082 45.833 18.45 0.00 43.37 4.00
378 678 4.451629 TCACTAGTGCTAAGTGCTAACC 57.548 45.455 18.45 0.00 43.37 2.85
498 858 0.652592 GCTAAGATCAATGCGTGCGT 59.347 50.000 0.00 0.00 0.00 5.24
499 859 0.933097 AGCTAAGATCAATGCGTGCG 59.067 50.000 0.00 0.00 0.00 5.34
500 860 2.611292 AGAAGCTAAGATCAATGCGTGC 59.389 45.455 0.00 0.00 0.00 5.34
516 938 0.798771 CCGTCGAGTACAGCAGAAGC 60.799 60.000 0.00 0.00 42.56 3.86
517 939 0.522180 ACCGTCGAGTACAGCAGAAG 59.478 55.000 0.00 0.00 0.00 2.85
518 940 1.466167 GTACCGTCGAGTACAGCAGAA 59.534 52.381 15.03 0.00 41.87 3.02
519 941 1.081892 GTACCGTCGAGTACAGCAGA 58.918 55.000 15.03 0.00 41.87 4.26
560 982 3.665190 AGTGCGAAAGGTAGAAAAGAGG 58.335 45.455 0.00 0.00 0.00 3.69
672 3792 3.826754 TGCTAGCCCGACTGCTCG 61.827 66.667 13.29 0.00 41.68 5.03
708 3833 3.322466 CCACGCCCCTGTCTTCCT 61.322 66.667 0.00 0.00 0.00 3.36
784 3909 2.050350 CCACGTAGGAAGGCGAGGA 61.050 63.158 0.00 0.00 40.39 3.71
855 3987 0.759436 ATAGGTGGGCGAGGTAGTGG 60.759 60.000 0.00 0.00 0.00 4.00
869 4005 1.131883 CTAGGCGCGCGTTATATAGGT 59.868 52.381 32.36 7.81 0.00 3.08
895 4031 3.912745 AACCGTGGTTGATCCGGCC 62.913 63.158 2.89 0.00 45.49 6.13
942 4078 1.298014 GCTCCTTCCCCTCACTGTG 59.702 63.158 0.17 0.17 0.00 3.66
947 4083 0.906756 CTCAGTGCTCCTTCCCCTCA 60.907 60.000 0.00 0.00 0.00 3.86
1218 4371 4.883585 AGGTACTCGTACATAATCACCGAA 59.116 41.667 9.22 0.00 37.78 4.30
1236 4389 3.190874 CCATCAGCGAAAGAAGAGGTAC 58.809 50.000 0.00 0.00 0.00 3.34
1238 4391 1.677217 GCCATCAGCGAAAGAAGAGGT 60.677 52.381 0.00 0.00 0.00 3.85
1239 4392 1.012841 GCCATCAGCGAAAGAAGAGG 58.987 55.000 0.00 0.00 0.00 3.69
1240 4393 1.012841 GGCCATCAGCGAAAGAAGAG 58.987 55.000 0.00 0.00 45.17 2.85
1241 4394 0.615331 AGGCCATCAGCGAAAGAAGA 59.385 50.000 5.01 0.00 45.17 2.87
1242 4395 0.731417 CAGGCCATCAGCGAAAGAAG 59.269 55.000 5.01 0.00 45.17 2.85
1243 4396 0.324614 TCAGGCCATCAGCGAAAGAA 59.675 50.000 5.01 0.00 45.17 2.52
1249 4402 1.381928 AAATGCTCAGGCCATCAGCG 61.382 55.000 5.01 0.00 45.17 5.18
1259 4412 2.876091 CCACAATGCAGAAATGCTCAG 58.124 47.619 1.53 0.00 35.49 3.35
1261 4414 1.203994 AGCCACAATGCAGAAATGCTC 59.796 47.619 1.53 0.00 35.49 4.26
1262 4415 1.263356 AGCCACAATGCAGAAATGCT 58.737 45.000 1.53 0.00 35.49 3.79
1263 4416 2.088950 AAGCCACAATGCAGAAATGC 57.911 45.000 0.00 0.00 0.00 3.56
1265 4418 3.069872 TGTCAAAGCCACAATGCAGAAAT 59.930 39.130 0.00 0.00 0.00 2.17
1312 4465 0.110373 GCTTTGCCGTACAAGAACCG 60.110 55.000 0.00 0.00 40.06 4.44
1329 4482 3.417275 CTTCAGATCGGCGGTCGCT 62.417 63.158 15.35 0.00 41.60 4.93
1425 4578 1.494824 ACGGCAAGACGAACAGTAAC 58.505 50.000 0.66 0.00 37.61 2.50
1426 4579 1.862201 CAACGGCAAGACGAACAGTAA 59.138 47.619 0.66 0.00 37.61 2.24
1428 4581 1.772063 GCAACGGCAAGACGAACAGT 61.772 55.000 0.66 0.00 40.72 3.55
1431 4585 1.852067 ATGGCAACGGCAAGACGAAC 61.852 55.000 0.66 0.00 42.43 3.95
1441 4595 1.010419 GCAGCTGAAAATGGCAACGG 61.010 55.000 20.43 0.00 42.51 4.44
1443 4597 0.671472 GGGCAGCTGAAAATGGCAAC 60.671 55.000 20.43 0.00 43.35 4.17
1461 4615 2.509336 GATGTCACGGCCTCACGG 60.509 66.667 0.00 0.00 38.39 4.94
1471 4625 1.003839 TTCACGGGGCAGATGTCAC 60.004 57.895 0.00 0.00 0.00 3.67
1472 4626 1.003839 GTTCACGGGGCAGATGTCA 60.004 57.895 0.00 0.00 0.00 3.58
1473 4627 1.021390 CAGTTCACGGGGCAGATGTC 61.021 60.000 0.00 0.00 0.00 3.06
1474 4628 1.003355 CAGTTCACGGGGCAGATGT 60.003 57.895 0.00 0.00 0.00 3.06
1523 4677 5.100259 GGAATCAACACTGAAAGATGCATG 58.900 41.667 2.46 0.00 37.43 4.06
1562 4716 4.080015 TCGACCCATTCCCATTTTACTCAT 60.080 41.667 0.00 0.00 0.00 2.90
1576 4730 0.466189 GCATGTCCCATCGACCCATT 60.466 55.000 0.00 0.00 41.18 3.16
1639 4815 6.531439 GTGCCGTGTTCTTTGTAAATAGTAG 58.469 40.000 0.00 0.00 0.00 2.57
1640 4816 5.118971 CGTGCCGTGTTCTTTGTAAATAGTA 59.881 40.000 0.00 0.00 0.00 1.82
1641 4817 4.084223 CGTGCCGTGTTCTTTGTAAATAGT 60.084 41.667 0.00 0.00 0.00 2.12
1696 4872 9.036671 GTTATTTTGTTTAAAGTGGCAGCTTTA 57.963 29.630 14.25 14.25 39.22 1.85
1738 4918 2.622436 CACTAGCAGTAACTCAAGGGC 58.378 52.381 0.00 0.00 0.00 5.19
1741 4921 7.602517 AATTAAGCACTAGCAGTAACTCAAG 57.397 36.000 0.00 0.00 45.49 3.02
1751 4931 4.094887 GCAAGCACTAATTAAGCACTAGCA 59.905 41.667 10.99 0.00 45.49 3.49
1752 4932 4.333926 AGCAAGCACTAATTAAGCACTAGC 59.666 41.667 10.99 8.79 42.56 3.42
1755 4935 4.761739 TCAAGCAAGCACTAATTAAGCACT 59.238 37.500 10.99 4.13 0.00 4.40
1756 4936 4.853743 GTCAAGCAAGCACTAATTAAGCAC 59.146 41.667 10.99 2.34 0.00 4.40
1758 4938 4.091424 CGTCAAGCAAGCACTAATTAAGC 58.909 43.478 0.00 2.20 0.00 3.09
1759 4939 4.154195 ACCGTCAAGCAAGCACTAATTAAG 59.846 41.667 0.00 0.00 0.00 1.85
1760 4940 4.069304 ACCGTCAAGCAAGCACTAATTAA 58.931 39.130 0.00 0.00 0.00 1.40
1763 4943 2.185004 ACCGTCAAGCAAGCACTAAT 57.815 45.000 0.00 0.00 0.00 1.73
1774 4960 1.732259 GGATGCAACAGTACCGTCAAG 59.268 52.381 0.00 0.00 0.00 3.02
1775 4961 1.346395 AGGATGCAACAGTACCGTCAA 59.654 47.619 0.00 0.00 0.00 3.18
1776 4962 0.973632 AGGATGCAACAGTACCGTCA 59.026 50.000 0.00 0.00 0.00 4.35
1778 4964 0.973632 TGAGGATGCAACAGTACCGT 59.026 50.000 0.00 0.00 0.00 4.83
1779 4965 1.732259 GTTGAGGATGCAACAGTACCG 59.268 52.381 0.00 0.00 45.65 4.02
1786 4972 1.338200 ACTCGAGGTTGAGGATGCAAC 60.338 52.381 18.41 0.00 45.62 4.17
1794 4980 6.037098 CCTCTTACATTTACTCGAGGTTGAG 58.963 44.000 18.41 13.57 41.86 3.02
1809 4995 7.201767 GCATTGCAAAGATTAGTCCTCTTACAT 60.202 37.037 1.71 0.00 32.72 2.29
1810 4996 6.094048 GCATTGCAAAGATTAGTCCTCTTACA 59.906 38.462 1.71 0.00 32.72 2.41
1811 4997 6.490534 GCATTGCAAAGATTAGTCCTCTTAC 58.509 40.000 1.71 0.00 32.72 2.34
1812 4998 5.294306 CGCATTGCAAAGATTAGTCCTCTTA 59.706 40.000 1.71 0.00 32.72 2.10
1813 4999 4.095483 CGCATTGCAAAGATTAGTCCTCTT 59.905 41.667 1.71 0.00 34.46 2.85
1814 5000 3.624861 CGCATTGCAAAGATTAGTCCTCT 59.375 43.478 1.71 0.00 0.00 3.69
1815 5001 3.790123 GCGCATTGCAAAGATTAGTCCTC 60.790 47.826 1.71 0.00 45.45 3.71
1816 5002 2.098117 GCGCATTGCAAAGATTAGTCCT 59.902 45.455 1.71 0.00 45.45 3.85
1817 5003 2.454055 GCGCATTGCAAAGATTAGTCC 58.546 47.619 1.71 0.00 45.45 3.85
1830 5016 2.097160 GACGACAGCTGCGCATTG 59.903 61.111 24.03 15.63 0.00 2.82
1831 5017 3.481903 CGACGACAGCTGCGCATT 61.482 61.111 24.03 0.00 0.00 3.56
2376 5579 2.298661 CCAGTACCGGCCCTCCTTT 61.299 63.158 0.00 0.00 0.00 3.11
2388 5591 2.234168 GTCCTTCTCCTTCCACCAGTAC 59.766 54.545 0.00 0.00 0.00 2.73
2581 5784 4.523173 GTCATGGATCCATTCTACGGAGTA 59.477 45.833 25.20 0.00 36.80 2.59
2645 5849 1.748122 GGAGAGACGTGCGGACCTA 60.748 63.158 0.00 0.00 0.00 3.08
2768 5979 2.607771 CGAACAGGTTTTGCATTGAGGG 60.608 50.000 0.00 0.00 0.00 4.30
2771 5982 2.034053 GGACGAACAGGTTTTGCATTGA 59.966 45.455 0.00 0.00 0.00 2.57
2780 5991 0.395312 AATCCACGGACGAACAGGTT 59.605 50.000 0.00 0.00 0.00 3.50
2782 5993 1.463444 GAAAATCCACGGACGAACAGG 59.537 52.381 0.00 0.00 0.00 4.00
2795 6006 4.217550 TGGAACGGATGTCAAAGAAAATCC 59.782 41.667 0.00 0.00 36.10 3.01
2798 6009 4.824537 TGATGGAACGGATGTCAAAGAAAA 59.175 37.500 0.00 0.00 0.00 2.29
2808 6022 1.143305 GCTCGATGATGGAACGGATG 58.857 55.000 0.00 0.00 0.00 3.51
2810 6024 1.065764 CGCTCGATGATGGAACGGA 59.934 57.895 0.00 0.00 0.00 4.69
2833 6055 3.666883 CGCAGTATCAATGGCGTAAAA 57.333 42.857 0.00 0.00 44.11 1.52
2842 6064 4.046938 AGACGATGAACGCAGTATCAAT 57.953 40.909 0.00 0.00 45.00 2.57
2854 6076 4.512484 TGGAACATTGCATAGACGATGAA 58.488 39.130 0.00 0.00 37.82 2.57
2884 6106 3.500448 TGATTAAAGGACCACAGTGCA 57.500 42.857 0.00 0.00 36.65 4.57
2898 6120 4.404394 TGTACTGGATCGAGCCTTGATTAA 59.596 41.667 22.18 0.00 0.00 1.40
2908 6130 6.330278 TGATTAAAGTGTGTACTGGATCGAG 58.670 40.000 2.78 2.78 37.19 4.04
2937 6165 7.063593 TCCACTTATTACTGAGCTGATCTACT 58.936 38.462 0.00 0.00 0.00 2.57
2938 6166 7.278461 TCCACTTATTACTGAGCTGATCTAC 57.722 40.000 0.00 0.00 0.00 2.59
2939 6167 7.014711 CCTTCCACTTATTACTGAGCTGATCTA 59.985 40.741 0.00 0.00 0.00 1.98
2940 6168 6.183360 CCTTCCACTTATTACTGAGCTGATCT 60.183 42.308 0.00 0.00 0.00 2.75
2941 6169 5.988561 CCTTCCACTTATTACTGAGCTGATC 59.011 44.000 0.00 0.00 0.00 2.92
2942 6170 5.426833 ACCTTCCACTTATTACTGAGCTGAT 59.573 40.000 0.00 0.00 0.00 2.90
2943 6171 4.777896 ACCTTCCACTTATTACTGAGCTGA 59.222 41.667 0.00 0.00 0.00 4.26
2944 6172 5.091261 ACCTTCCACTTATTACTGAGCTG 57.909 43.478 0.00 0.00 0.00 4.24
2955 6183 6.324512 TGTTACTGAACTGTACCTTCCACTTA 59.675 38.462 0.00 0.00 36.45 2.24
2956 6184 5.129815 TGTTACTGAACTGTACCTTCCACTT 59.870 40.000 0.00 0.00 36.45 3.16
2958 6186 4.952460 TGTTACTGAACTGTACCTTCCAC 58.048 43.478 0.00 0.00 36.45 4.02
2959 6187 4.039973 CCTGTTACTGAACTGTACCTTCCA 59.960 45.833 0.00 0.00 36.45 3.53
2960 6188 4.040095 ACCTGTTACTGAACTGTACCTTCC 59.960 45.833 0.00 0.00 36.45 3.46
2980 6208 0.036010 CTCGCTCAAATGGACCACCT 60.036 55.000 0.00 0.00 37.04 4.00
3000 6228 0.723414 CAAGCAGTGGCATCTACGTG 59.277 55.000 0.00 0.00 44.61 4.49
3021 6256 0.758123 CTTTTGGGCCTTTCCTGCAA 59.242 50.000 4.53 0.00 34.39 4.08
3085 6321 1.945394 AGCTGATGCATCCAAACGATC 59.055 47.619 23.67 0.00 42.74 3.69
3110 6346 6.155565 TCGTGAAACCAGAGGGAGATTTATTA 59.844 38.462 0.00 0.00 38.05 0.98
3111 6347 5.045869 TCGTGAAACCAGAGGGAGATTTATT 60.046 40.000 0.00 0.00 38.05 1.40
3112 6348 4.469945 TCGTGAAACCAGAGGGAGATTTAT 59.530 41.667 0.00 0.00 38.05 1.40
3192 6430 3.667114 AGATAGAGGGAGGTCATGAGGAT 59.333 47.826 0.00 0.00 0.00 3.24
3193 6431 3.067470 AGATAGAGGGAGGTCATGAGGA 58.933 50.000 0.00 0.00 0.00 3.71
3194 6432 3.541242 AGATAGAGGGAGGTCATGAGG 57.459 52.381 0.00 0.00 0.00 3.86
3202 6440 5.104318 AGCAAGGTAAAAAGATAGAGGGAGG 60.104 44.000 0.00 0.00 0.00 4.30
3316 6554 1.716028 AAAAACTCAGGACCGGCCCT 61.716 55.000 2.07 2.07 37.37 5.19
3317 6555 1.228459 AAAAACTCAGGACCGGCCC 60.228 57.895 0.00 0.00 37.37 5.80
3318 6556 1.524008 CCAAAAACTCAGGACCGGCC 61.524 60.000 0.00 3.58 0.00 6.13
3319 6557 1.524008 CCCAAAAACTCAGGACCGGC 61.524 60.000 0.00 0.00 0.00 6.13
3320 6558 0.893727 CCCCAAAAACTCAGGACCGG 60.894 60.000 0.00 0.00 0.00 5.28
3321 6559 1.524008 GCCCCAAAAACTCAGGACCG 61.524 60.000 0.00 0.00 0.00 4.79
3322 6560 1.185618 GGCCCCAAAAACTCAGGACC 61.186 60.000 0.00 0.00 0.00 4.46
3323 6561 1.185618 GGGCCCCAAAAACTCAGGAC 61.186 60.000 12.23 0.00 0.00 3.85
3324 6562 1.155155 GGGCCCCAAAAACTCAGGA 59.845 57.895 12.23 0.00 0.00 3.86
3325 6563 2.275380 CGGGCCCCAAAAACTCAGG 61.275 63.158 18.66 0.00 0.00 3.86
3326 6564 2.275380 CCGGGCCCCAAAAACTCAG 61.275 63.158 18.66 0.00 0.00 3.35
3327 6565 2.203567 CCGGGCCCCAAAAACTCA 60.204 61.111 18.66 0.00 0.00 3.41
3328 6566 2.994995 CCCGGGCCCCAAAAACTC 60.995 66.667 18.66 0.00 0.00 3.01
3329 6567 4.631740 CCCCGGGCCCCAAAAACT 62.632 66.667 17.73 0.00 0.00 2.66
3340 6578 3.733295 TATTTGAAGGTTCGCCCCGGG 62.733 57.143 15.80 15.80 38.27 5.73
3341 6579 0.393267 TATTTGAAGGTTCGCCCCGG 60.393 55.000 0.00 0.00 38.27 5.73
3342 6580 1.675552 ATATTTGAAGGTTCGCCCCG 58.324 50.000 0.00 0.00 38.27 5.73
3343 6581 3.314357 GTGTATATTTGAAGGTTCGCCCC 59.686 47.826 0.00 0.00 38.27 5.80
3344 6582 3.942748 TGTGTATATTTGAAGGTTCGCCC 59.057 43.478 0.00 0.00 38.27 6.13
3345 6583 5.295787 TGATGTGTATATTTGAAGGTTCGCC 59.704 40.000 0.00 0.00 37.60 5.54
3346 6584 6.358118 TGATGTGTATATTTGAAGGTTCGC 57.642 37.500 0.00 0.00 0.00 4.70
3347 6585 9.261180 ACTATGATGTGTATATTTGAAGGTTCG 57.739 33.333 0.00 0.00 0.00 3.95
3415 6653 9.941325 ACTGATTTTGGATGCATTTAAATGTTA 57.059 25.926 25.15 16.71 38.65 2.41
3416 6654 8.851541 ACTGATTTTGGATGCATTTAAATGTT 57.148 26.923 25.15 15.37 38.65 2.71
3425 6663 8.746530 GGATAATCATACTGATTTTGGATGCAT 58.253 33.333 0.00 0.00 44.03 3.96
3426 6664 7.724951 TGGATAATCATACTGATTTTGGATGCA 59.275 33.333 7.60 4.60 44.03 3.96
3427 6665 8.114331 TGGATAATCATACTGATTTTGGATGC 57.886 34.615 7.60 2.38 44.03 3.91
3428 6666 9.293404 ACTGGATAATCATACTGATTTTGGATG 57.707 33.333 7.60 0.00 44.03 3.51
3480 6718 7.231317 TGCATCAAGGAGTGTTAGAAGATTTTT 59.769 33.333 0.00 0.00 0.00 1.94
3481 6719 6.716628 TGCATCAAGGAGTGTTAGAAGATTTT 59.283 34.615 0.00 0.00 0.00 1.82
3482 6720 6.240894 TGCATCAAGGAGTGTTAGAAGATTT 58.759 36.000 0.00 0.00 0.00 2.17
3483 6721 5.809001 TGCATCAAGGAGTGTTAGAAGATT 58.191 37.500 0.00 0.00 0.00 2.40
3484 6722 5.426689 TGCATCAAGGAGTGTTAGAAGAT 57.573 39.130 0.00 0.00 0.00 2.40
3485 6723 4.890158 TGCATCAAGGAGTGTTAGAAGA 57.110 40.909 0.00 0.00 0.00 2.87
3486 6724 5.471456 ACTTTGCATCAAGGAGTGTTAGAAG 59.529 40.000 3.31 0.00 0.00 2.85
3487 6725 5.376625 ACTTTGCATCAAGGAGTGTTAGAA 58.623 37.500 3.31 0.00 0.00 2.10
3488 6726 4.973168 ACTTTGCATCAAGGAGTGTTAGA 58.027 39.130 3.31 0.00 0.00 2.10
3489 6727 4.756642 TGACTTTGCATCAAGGAGTGTTAG 59.243 41.667 3.31 0.00 0.00 2.34
3490 6728 4.515191 GTGACTTTGCATCAAGGAGTGTTA 59.485 41.667 3.31 0.00 0.00 2.41
3491 6729 3.316308 GTGACTTTGCATCAAGGAGTGTT 59.684 43.478 3.31 0.00 0.00 3.32
3492 6730 2.880890 GTGACTTTGCATCAAGGAGTGT 59.119 45.455 3.31 0.00 0.00 3.55
3493 6731 3.144506 AGTGACTTTGCATCAAGGAGTG 58.855 45.455 3.31 0.00 0.00 3.51
3494 6732 3.498774 AGTGACTTTGCATCAAGGAGT 57.501 42.857 3.31 0.00 0.00 3.85
3495 6733 5.645067 TCATAAGTGACTTTGCATCAAGGAG 59.355 40.000 1.97 0.00 0.00 3.69
3496 6734 5.559770 TCATAAGTGACTTTGCATCAAGGA 58.440 37.500 1.97 0.00 0.00 3.36
3497 6735 5.885230 TCATAAGTGACTTTGCATCAAGG 57.115 39.130 1.97 0.00 0.00 3.61
3498 6736 6.263344 CCATCATAAGTGACTTTGCATCAAG 58.737 40.000 1.97 0.00 37.14 3.02
3499 6737 5.125900 CCCATCATAAGTGACTTTGCATCAA 59.874 40.000 1.97 0.00 37.14 2.57
3500 6738 4.641541 CCCATCATAAGTGACTTTGCATCA 59.358 41.667 1.97 0.00 37.14 3.07
3501 6739 4.037208 CCCCATCATAAGTGACTTTGCATC 59.963 45.833 1.97 0.00 37.14 3.91
3502 6740 3.956199 CCCCATCATAAGTGACTTTGCAT 59.044 43.478 1.97 0.00 37.14 3.96
3503 6741 3.245229 ACCCCATCATAAGTGACTTTGCA 60.245 43.478 1.97 0.00 37.14 4.08
3504 6742 3.356290 ACCCCATCATAAGTGACTTTGC 58.644 45.455 1.97 0.00 37.14 3.68
3505 6743 3.623060 CGACCCCATCATAAGTGACTTTG 59.377 47.826 1.97 2.29 37.14 2.77
3506 6744 3.517901 TCGACCCCATCATAAGTGACTTT 59.482 43.478 1.97 0.00 37.14 2.66
3507 6745 3.104512 TCGACCCCATCATAAGTGACTT 58.895 45.455 2.37 2.37 37.14 3.01
3508 6746 2.747177 TCGACCCCATCATAAGTGACT 58.253 47.619 0.00 0.00 37.14 3.41
3509 6747 3.181465 ACATCGACCCCATCATAAGTGAC 60.181 47.826 0.00 0.00 37.14 3.67
3510 6748 3.038280 ACATCGACCCCATCATAAGTGA 58.962 45.455 0.00 0.00 39.04 3.41
3511 6749 3.181466 TGACATCGACCCCATCATAAGTG 60.181 47.826 0.00 0.00 0.00 3.16
3512 6750 3.038280 TGACATCGACCCCATCATAAGT 58.962 45.455 0.00 0.00 0.00 2.24
3513 6751 3.751479 TGACATCGACCCCATCATAAG 57.249 47.619 0.00 0.00 0.00 1.73
3514 6752 4.347876 AGATTGACATCGACCCCATCATAA 59.652 41.667 0.00 0.00 34.17 1.90
3515 6753 3.903714 AGATTGACATCGACCCCATCATA 59.096 43.478 0.00 0.00 34.17 2.15
3516 6754 2.707791 AGATTGACATCGACCCCATCAT 59.292 45.455 0.00 0.00 34.17 2.45
3517 6755 2.103094 GAGATTGACATCGACCCCATCA 59.897 50.000 0.00 0.00 34.17 3.07
3518 6756 2.103094 TGAGATTGACATCGACCCCATC 59.897 50.000 0.00 0.00 34.17 3.51
3519 6757 2.118679 TGAGATTGACATCGACCCCAT 58.881 47.619 0.00 0.00 34.17 4.00
3520 6758 1.567357 TGAGATTGACATCGACCCCA 58.433 50.000 0.00 0.00 34.17 4.96
3521 6759 2.548920 GGATGAGATTGACATCGACCCC 60.549 54.545 0.00 0.00 43.24 4.95
3522 6760 2.103094 TGGATGAGATTGACATCGACCC 59.897 50.000 0.00 0.00 43.24 4.46
3523 6761 3.459232 TGGATGAGATTGACATCGACC 57.541 47.619 0.00 0.00 43.24 4.79
3524 6762 7.664082 ATTAATGGATGAGATTGACATCGAC 57.336 36.000 0.00 0.00 43.24 4.20
3525 6763 8.681486 AAATTAATGGATGAGATTGACATCGA 57.319 30.769 0.00 0.00 43.24 3.59
3526 6764 8.781196 AGAAATTAATGGATGAGATTGACATCG 58.219 33.333 0.00 0.00 43.24 3.84
3529 6767 9.690913 AGAAGAAATTAATGGATGAGATTGACA 57.309 29.630 0.00 0.00 0.00 3.58
3531 6769 9.347240 GGAGAAGAAATTAATGGATGAGATTGA 57.653 33.333 0.00 0.00 0.00 2.57
3532 6770 9.128404 TGGAGAAGAAATTAATGGATGAGATTG 57.872 33.333 0.00 0.00 0.00 2.67
3533 6771 9.878737 ATGGAGAAGAAATTAATGGATGAGATT 57.121 29.630 0.00 0.00 0.00 2.40
3534 6772 9.298250 CATGGAGAAGAAATTAATGGATGAGAT 57.702 33.333 0.00 0.00 0.00 2.75
3535 6773 7.230108 GCATGGAGAAGAAATTAATGGATGAGA 59.770 37.037 0.00 0.00 0.00 3.27
3536 6774 7.013942 TGCATGGAGAAGAAATTAATGGATGAG 59.986 37.037 0.00 0.00 0.00 2.90
3537 6775 6.834969 TGCATGGAGAAGAAATTAATGGATGA 59.165 34.615 0.00 0.00 0.00 2.92
3538 6776 7.046292 TGCATGGAGAAGAAATTAATGGATG 57.954 36.000 0.00 0.00 0.00 3.51
3539 6777 7.850935 ATGCATGGAGAAGAAATTAATGGAT 57.149 32.000 0.00 0.00 0.00 3.41
3540 6778 8.765488 TTATGCATGGAGAAGAAATTAATGGA 57.235 30.769 10.16 0.00 0.00 3.41
3541 6779 9.419297 CATTATGCATGGAGAAGAAATTAATGG 57.581 33.333 10.16 0.00 0.00 3.16
3542 6780 9.976511 ACATTATGCATGGAGAAGAAATTAATG 57.023 29.630 10.16 8.74 37.17 1.90
3545 6783 8.786898 GCTACATTATGCATGGAGAAGAAATTA 58.213 33.333 10.16 0.00 46.18 1.40
3546 6784 7.255730 GGCTACATTATGCATGGAGAAGAAATT 60.256 37.037 10.16 0.00 46.18 1.82
3547 6785 6.208204 GGCTACATTATGCATGGAGAAGAAAT 59.792 38.462 10.16 0.00 46.18 2.17
3548 6786 5.532406 GGCTACATTATGCATGGAGAAGAAA 59.468 40.000 10.16 0.00 46.18 2.52
3549 6787 5.065914 GGCTACATTATGCATGGAGAAGAA 58.934 41.667 10.16 0.00 46.18 2.52
3550 6788 4.102996 TGGCTACATTATGCATGGAGAAGA 59.897 41.667 10.16 0.00 46.18 2.87
3551 6789 4.392047 TGGCTACATTATGCATGGAGAAG 58.608 43.478 10.16 2.73 46.18 2.85
3552 6790 4.436113 TGGCTACATTATGCATGGAGAA 57.564 40.909 10.16 0.00 46.18 2.87
3553 6791 4.436113 TTGGCTACATTATGCATGGAGA 57.564 40.909 10.16 0.00 46.18 3.71
3554 6792 4.261741 GGTTTGGCTACATTATGCATGGAG 60.262 45.833 10.16 0.77 46.03 3.86
3555 6793 3.636300 GGTTTGGCTACATTATGCATGGA 59.364 43.478 10.16 0.00 37.17 3.41
3556 6794 3.384146 TGGTTTGGCTACATTATGCATGG 59.616 43.478 10.16 1.09 37.17 3.66
3557 6795 4.652421 TGGTTTGGCTACATTATGCATG 57.348 40.909 10.16 0.00 39.07 4.06
3558 6796 5.874897 AATGGTTTGGCTACATTATGCAT 57.125 34.783 3.79 3.79 33.40 3.96
3559 6797 5.674052 AAATGGTTTGGCTACATTATGCA 57.326 34.783 0.00 0.00 34.00 3.96
3560 6798 8.143835 AGATTAAATGGTTTGGCTACATTATGC 58.856 33.333 0.00 0.00 34.00 3.14
3561 6799 9.683069 GAGATTAAATGGTTTGGCTACATTATG 57.317 33.333 0.00 0.00 34.00 1.90
3562 6800 9.646522 AGAGATTAAATGGTTTGGCTACATTAT 57.353 29.630 0.00 0.00 34.00 1.28
3563 6801 9.120538 GAGAGATTAAATGGTTTGGCTACATTA 57.879 33.333 0.00 0.00 34.00 1.90
3564 6802 7.836183 AGAGAGATTAAATGGTTTGGCTACATT 59.164 33.333 0.00 0.00 36.46 2.71
3565 6803 7.349598 AGAGAGATTAAATGGTTTGGCTACAT 58.650 34.615 0.00 0.00 0.00 2.29
3566 6804 6.721318 AGAGAGATTAAATGGTTTGGCTACA 58.279 36.000 0.00 0.00 0.00 2.74
3567 6805 7.336931 TCAAGAGAGATTAAATGGTTTGGCTAC 59.663 37.037 0.00 0.00 0.00 3.58
3568 6806 7.402054 TCAAGAGAGATTAAATGGTTTGGCTA 58.598 34.615 0.00 0.00 0.00 3.93
3569 6807 6.248433 TCAAGAGAGATTAAATGGTTTGGCT 58.752 36.000 0.00 0.00 0.00 4.75
3570 6808 6.151817 ACTCAAGAGAGATTAAATGGTTTGGC 59.848 38.462 3.73 0.00 44.98 4.52
3571 6809 7.693969 ACTCAAGAGAGATTAAATGGTTTGG 57.306 36.000 3.73 0.00 44.98 3.28
3575 6813 9.965902 ACAATAACTCAAGAGAGATTAAATGGT 57.034 29.630 3.73 0.00 44.98 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.