Multiple sequence alignment - TraesCS2B01G509800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G509800 chr2B 100.000 2193 0 0 1 2193 705888584 705890776 0.000000e+00 4050.0
1 TraesCS2B01G509800 chr2B 85.842 897 121 6 824 1716 706418587 706417693 0.000000e+00 948.0
2 TraesCS2B01G509800 chr2B 86.016 758 99 7 963 1716 425353460 425352706 0.000000e+00 806.0
3 TraesCS2B01G509800 chr2B 84.733 786 115 5 929 1710 57664553 57665337 0.000000e+00 782.0
4 TraesCS2B01G509800 chr2D 93.303 866 51 7 855 1716 585517487 585516625 0.000000e+00 1271.0
5 TraesCS2B01G509800 chr2D 86.457 923 110 13 797 1716 585477271 585476361 0.000000e+00 998.0
6 TraesCS2B01G509800 chr2D 86.382 749 94 8 973 1716 357701806 357701061 0.000000e+00 811.0
7 TraesCS2B01G509800 chr2D 85.115 786 112 5 929 1710 34988048 34988832 0.000000e+00 798.0
8 TraesCS2B01G509800 chr2D 87.339 466 45 9 1 466 585137481 585137932 2.490000e-144 521.0
9 TraesCS2B01G509800 chr2A 86.472 924 118 7 797 1716 719541409 719540489 0.000000e+00 1007.0
10 TraesCS2B01G509800 chr2A 84.625 787 114 7 929 1710 38309323 38310107 0.000000e+00 776.0
11 TraesCS2B01G509800 chr2A 86.503 489 52 9 1712 2193 227238827 227238346 1.930000e-145 525.0
12 TraesCS2B01G509800 chr2A 86.420 486 51 10 1712 2193 473927270 473927744 3.230000e-143 518.0
13 TraesCS2B01G509800 chr2A 84.807 362 53 2 296 656 352278115 352278475 1.600000e-96 363.0
14 TraesCS2B01G509800 chr2A 87.574 169 21 0 298 466 278481583 278481751 1.720000e-46 196.0
15 TraesCS2B01G509800 chr5B 91.134 485 33 4 1712 2193 674898259 674898736 0.000000e+00 649.0
16 TraesCS2B01G509800 chr5B 79.332 479 74 12 297 759 674897753 674898222 1.630000e-81 313.0
17 TraesCS2B01G509800 chr6B 87.347 490 48 9 1712 2193 547383035 547382552 1.140000e-152 549.0
18 TraesCS2B01G509800 chr6B 100.000 29 0 0 368 396 344914708 344914680 1.000000e-03 54.7
19 TraesCS2B01G509800 chr1B 86.735 490 50 10 1712 2193 437029910 437029428 4.150000e-147 531.0
20 TraesCS2B01G509800 chr1B 86.585 492 47 13 1712 2193 286835733 286835251 1.930000e-145 525.0
21 TraesCS2B01G509800 chrUn 86.420 486 51 10 1712 2193 448783802 448784276 3.230000e-143 518.0
22 TraesCS2B01G509800 chrUn 87.692 65 4 3 516 577 41484816 41484879 3.020000e-09 73.1
23 TraesCS2B01G509800 chrUn 85.455 55 7 1 515 568 468505608 468505554 3.040000e-04 56.5
24 TraesCS2B01G509800 chrUn 100.000 29 0 0 516 544 104715940 104715968 1.000000e-03 54.7
25 TraesCS2B01G509800 chrUn 84.483 58 6 1 632 689 192723238 192723184 1.000000e-03 54.7
26 TraesCS2B01G509800 chr7B 86.420 486 51 10 1712 2193 387297326 387297800 3.230000e-143 518.0
27 TraesCS2B01G509800 chr7B 86.705 173 21 2 294 465 105038160 105038331 7.990000e-45 191.0
28 TraesCS2B01G509800 chr6A 86.327 490 50 12 1712 2193 413881332 413881812 3.230000e-143 518.0
29 TraesCS2B01G509800 chr6A 87.541 305 33 1 455 759 607814204 607813905 4.480000e-92 348.0
30 TraesCS2B01G509800 chr6A 88.750 160 18 0 307 466 607814385 607814226 1.720000e-46 196.0
31 TraesCS2B01G509800 chr5D 84.874 476 53 7 298 759 202443803 202444273 1.530000e-126 462.0
32 TraesCS2B01G509800 chr5D 82.394 284 35 4 298 566 287287058 287286775 1.310000e-57 233.0
33 TraesCS2B01G509800 chr6D 86.567 402 48 1 358 759 396201037 396200642 2.580000e-119 438.0
34 TraesCS2B01G509800 chr6D 86.614 254 34 0 456 709 189402911 189403164 4.610000e-72 281.0
35 TraesCS2B01G509800 chr6D 81.699 306 46 5 452 755 80402155 80402452 1.680000e-61 246.0
36 TraesCS2B01G509800 chr6D 100.000 30 0 0 515 544 11132948 11132919 3.040000e-04 56.5
37 TraesCS2B01G509800 chr6D 100.000 30 0 0 515 544 106381226 106381255 3.040000e-04 56.5
38 TraesCS2B01G509800 chr6D 100.000 30 0 0 515 544 225665962 225665991 3.040000e-04 56.5
39 TraesCS2B01G509800 chr6D 100.000 30 0 0 515 544 254991178 254991207 3.040000e-04 56.5
40 TraesCS2B01G509800 chr3D 89.610 308 26 3 452 759 505069072 505069373 9.500000e-104 387.0
41 TraesCS2B01G509800 chr3D 83.740 246 35 1 514 759 282644175 282643935 6.090000e-56 228.0
42 TraesCS2B01G509800 chr3B 81.641 463 78 6 298 759 731633236 731632780 5.720000e-101 377.0
43 TraesCS2B01G509800 chr3B 100.000 33 0 0 7 39 611173540 611173572 6.540000e-06 62.1
44 TraesCS2B01G509800 chr1D 88.636 308 29 2 452 759 394336146 394336447 9.560000e-99 370.0
45 TraesCS2B01G509800 chr1D 86.275 306 35 4 455 759 60909406 60909107 2.100000e-85 326.0
46 TraesCS2B01G509800 chr1D 89.941 169 17 0 298 466 342814063 342813895 3.670000e-53 219.0
47 TraesCS2B01G509800 chr1D 89.091 165 16 2 452 615 410010678 410010841 1.030000e-48 204.0
48 TraesCS2B01G509800 chr1D 82.873 181 19 4 297 466 410010483 410010662 3.770000e-33 152.0
49 TraesCS2B01G509800 chr1D 85.542 83 9 3 498 577 208725284 208725366 1.400000e-12 84.2
50 TraesCS2B01G509800 chr4D 87.037 54 6 1 515 567 411576972 411576919 2.350000e-05 60.2
51 TraesCS2B01G509800 chr4D 85.185 54 7 1 515 567 407739228 407739281 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G509800 chr2B 705888584 705890776 2192 False 4050 4050 100.000 1 2193 1 chr2B.!!$F2 2192
1 TraesCS2B01G509800 chr2B 706417693 706418587 894 True 948 948 85.842 824 1716 1 chr2B.!!$R2 892
2 TraesCS2B01G509800 chr2B 425352706 425353460 754 True 806 806 86.016 963 1716 1 chr2B.!!$R1 753
3 TraesCS2B01G509800 chr2B 57664553 57665337 784 False 782 782 84.733 929 1710 1 chr2B.!!$F1 781
4 TraesCS2B01G509800 chr2D 585516625 585517487 862 True 1271 1271 93.303 855 1716 1 chr2D.!!$R3 861
5 TraesCS2B01G509800 chr2D 585476361 585477271 910 True 998 998 86.457 797 1716 1 chr2D.!!$R2 919
6 TraesCS2B01G509800 chr2D 357701061 357701806 745 True 811 811 86.382 973 1716 1 chr2D.!!$R1 743
7 TraesCS2B01G509800 chr2D 34988048 34988832 784 False 798 798 85.115 929 1710 1 chr2D.!!$F1 781
8 TraesCS2B01G509800 chr2A 719540489 719541409 920 True 1007 1007 86.472 797 1716 1 chr2A.!!$R2 919
9 TraesCS2B01G509800 chr2A 38309323 38310107 784 False 776 776 84.625 929 1710 1 chr2A.!!$F1 781
10 TraesCS2B01G509800 chr5B 674897753 674898736 983 False 481 649 85.233 297 2193 2 chr5B.!!$F1 1896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 675 0.033504 GTCCTCTTTGCCGTCAGTGA 59.966 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 1934 2.157474 TGCAGATTTCATTCACGTCACG 59.843 45.455 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.959478 CGCAGGTCGCTAAATAGGA 57.041 52.632 0.00 0.00 39.08 2.94
36 37 1.772182 CGCAGGTCGCTAAATAGGAG 58.228 55.000 0.00 0.00 39.08 3.69
37 38 1.603172 CGCAGGTCGCTAAATAGGAGG 60.603 57.143 0.00 0.00 39.08 4.30
38 39 1.413077 GCAGGTCGCTAAATAGGAGGT 59.587 52.381 0.00 0.00 37.77 3.85
39 40 2.546162 GCAGGTCGCTAAATAGGAGGTC 60.546 54.545 0.00 0.00 37.77 3.85
40 41 2.959707 CAGGTCGCTAAATAGGAGGTCT 59.040 50.000 0.00 0.00 0.00 3.85
41 42 3.004944 CAGGTCGCTAAATAGGAGGTCTC 59.995 52.174 0.00 0.00 0.00 3.36
42 43 2.957006 GGTCGCTAAATAGGAGGTCTCA 59.043 50.000 0.14 0.00 0.00 3.27
43 44 3.574826 GGTCGCTAAATAGGAGGTCTCAT 59.425 47.826 0.14 0.00 0.00 2.90
44 45 4.765856 GGTCGCTAAATAGGAGGTCTCATA 59.234 45.833 0.14 0.00 0.00 2.15
45 46 5.243283 GGTCGCTAAATAGGAGGTCTCATAA 59.757 44.000 0.14 0.00 29.23 1.90
46 47 6.071278 GGTCGCTAAATAGGAGGTCTCATAAT 60.071 42.308 0.14 0.00 29.23 1.28
47 48 7.122353 GGTCGCTAAATAGGAGGTCTCATAATA 59.878 40.741 0.14 0.00 29.23 0.98
48 49 8.521176 GTCGCTAAATAGGAGGTCTCATAATAA 58.479 37.037 0.14 0.00 29.23 1.40
49 50 9.085645 TCGCTAAATAGGAGGTCTCATAATAAA 57.914 33.333 0.14 0.00 29.23 1.40
50 51 9.141400 CGCTAAATAGGAGGTCTCATAATAAAC 57.859 37.037 0.14 0.00 29.23 2.01
51 52 9.438228 GCTAAATAGGAGGTCTCATAATAAACC 57.562 37.037 0.14 0.00 29.23 3.27
52 53 9.640963 CTAAATAGGAGGTCTCATAATAAACCG 57.359 37.037 0.14 0.00 36.87 4.44
53 54 4.957684 AGGAGGTCTCATAATAAACCGG 57.042 45.455 0.00 0.00 36.87 5.28
54 55 4.553678 AGGAGGTCTCATAATAAACCGGA 58.446 43.478 9.46 0.00 36.87 5.14
55 56 4.589374 AGGAGGTCTCATAATAAACCGGAG 59.411 45.833 9.46 0.00 36.87 4.63
56 57 8.457149 ATAGGAGGTCTCATAATAAACCGGAGG 61.457 44.444 9.46 0.00 41.01 4.30
71 72 3.252974 CGGAGGAAAAGATACTGCAGT 57.747 47.619 25.12 25.12 0.00 4.40
72 73 3.600388 CGGAGGAAAAGATACTGCAGTT 58.400 45.455 27.06 12.95 0.00 3.16
73 74 3.372206 CGGAGGAAAAGATACTGCAGTTG 59.628 47.826 27.06 0.00 0.00 3.16
74 75 3.127721 GGAGGAAAAGATACTGCAGTTGC 59.872 47.826 27.06 17.07 42.50 4.17
75 76 4.006319 GAGGAAAAGATACTGCAGTTGCT 58.994 43.478 27.06 19.11 42.66 3.91
76 77 3.755378 AGGAAAAGATACTGCAGTTGCTG 59.245 43.478 27.06 9.12 44.21 4.41
86 87 3.557207 CAGTTGCTGCACTTGAACC 57.443 52.632 0.00 0.00 0.00 3.62
87 88 0.740149 CAGTTGCTGCACTTGAACCA 59.260 50.000 0.00 0.00 0.00 3.67
88 89 1.134753 CAGTTGCTGCACTTGAACCAA 59.865 47.619 0.00 0.00 0.00 3.67
89 90 1.824230 AGTTGCTGCACTTGAACCAAA 59.176 42.857 0.00 0.00 0.00 3.28
90 91 1.926510 GTTGCTGCACTTGAACCAAAC 59.073 47.619 0.00 0.00 0.00 2.93
91 92 1.180907 TGCTGCACTTGAACCAAACA 58.819 45.000 0.00 0.00 0.00 2.83
92 93 1.547820 TGCTGCACTTGAACCAAACAA 59.452 42.857 0.00 0.00 0.00 2.83
93 94 2.168106 TGCTGCACTTGAACCAAACAAT 59.832 40.909 0.00 0.00 0.00 2.71
94 95 3.382865 TGCTGCACTTGAACCAAACAATA 59.617 39.130 0.00 0.00 0.00 1.90
95 96 3.735746 GCTGCACTTGAACCAAACAATAC 59.264 43.478 0.00 0.00 0.00 1.89
96 97 4.499696 GCTGCACTTGAACCAAACAATACT 60.500 41.667 0.00 0.00 0.00 2.12
97 98 5.278266 GCTGCACTTGAACCAAACAATACTA 60.278 40.000 0.00 0.00 0.00 1.82
98 99 6.701145 TGCACTTGAACCAAACAATACTAA 57.299 33.333 0.00 0.00 0.00 2.24
99 100 7.283625 TGCACTTGAACCAAACAATACTAAT 57.716 32.000 0.00 0.00 0.00 1.73
100 101 7.367285 TGCACTTGAACCAAACAATACTAATC 58.633 34.615 0.00 0.00 0.00 1.75
101 102 7.230510 TGCACTTGAACCAAACAATACTAATCT 59.769 33.333 0.00 0.00 0.00 2.40
102 103 8.082242 GCACTTGAACCAAACAATACTAATCTT 58.918 33.333 0.00 0.00 0.00 2.40
103 104 9.398170 CACTTGAACCAAACAATACTAATCTTG 57.602 33.333 0.00 0.00 0.00 3.02
104 105 9.131791 ACTTGAACCAAACAATACTAATCTTGT 57.868 29.630 0.00 0.00 37.19 3.16
105 106 9.965824 CTTGAACCAAACAATACTAATCTTGTT 57.034 29.630 0.00 0.00 45.03 2.83
110 111 9.010029 ACCAAACAATACTAATCTTGTTACAGG 57.990 33.333 1.52 6.80 42.98 4.00
111 112 8.458843 CCAAACAATACTAATCTTGTTACAGGG 58.541 37.037 1.52 0.00 42.98 4.45
112 113 7.625828 AACAATACTAATCTTGTTACAGGGC 57.374 36.000 0.00 0.00 42.23 5.19
113 114 6.120220 ACAATACTAATCTTGTTACAGGGCC 58.880 40.000 0.00 0.00 31.74 5.80
114 115 5.968676 ATACTAATCTTGTTACAGGGCCA 57.031 39.130 6.18 0.00 0.00 5.36
115 116 4.650972 ACTAATCTTGTTACAGGGCCAA 57.349 40.909 6.18 0.00 0.00 4.52
116 117 4.332828 ACTAATCTTGTTACAGGGCCAAC 58.667 43.478 6.18 1.64 0.00 3.77
117 118 2.215942 ATCTTGTTACAGGGCCAACC 57.784 50.000 6.18 0.00 40.67 3.77
127 128 3.284336 GGCCAACCCAATTCGGTC 58.716 61.111 0.00 0.00 33.98 4.79
128 129 2.696759 GGCCAACCCAATTCGGTCG 61.697 63.158 0.00 0.00 33.98 4.79
129 130 2.874751 CCAACCCAATTCGGTCGC 59.125 61.111 0.00 0.00 33.98 5.19
130 131 2.696759 CCAACCCAATTCGGTCGCC 61.697 63.158 0.00 0.00 33.98 5.54
131 132 2.360726 AACCCAATTCGGTCGCCC 60.361 61.111 0.00 0.00 33.98 6.13
146 147 4.368808 CCCGCGAGCGTTGTGTTG 62.369 66.667 8.23 0.00 37.81 3.33
147 148 3.636043 CCGCGAGCGTTGTGTTGT 61.636 61.111 8.23 0.00 37.81 3.32
148 149 2.128128 CGCGAGCGTTGTGTTGTC 60.128 61.111 0.00 0.00 34.35 3.18
149 150 2.248431 GCGAGCGTTGTGTTGTCC 59.752 61.111 0.00 0.00 0.00 4.02
150 151 2.530497 GCGAGCGTTGTGTTGTCCA 61.530 57.895 0.00 0.00 0.00 4.02
151 152 1.841663 GCGAGCGTTGTGTTGTCCAT 61.842 55.000 0.00 0.00 0.00 3.41
152 153 1.424403 CGAGCGTTGTGTTGTCCATA 58.576 50.000 0.00 0.00 0.00 2.74
153 154 1.999735 CGAGCGTTGTGTTGTCCATAT 59.000 47.619 0.00 0.00 0.00 1.78
154 155 2.222796 CGAGCGTTGTGTTGTCCATATG 60.223 50.000 0.00 0.00 0.00 1.78
155 156 3.000041 GAGCGTTGTGTTGTCCATATGA 59.000 45.455 3.65 0.00 0.00 2.15
156 157 2.742053 AGCGTTGTGTTGTCCATATGAC 59.258 45.455 3.65 1.44 44.72 3.06
166 167 3.402186 CCATATGACGCATGTGGGT 57.598 52.632 20.22 2.09 45.35 4.51
167 168 0.946528 CCATATGACGCATGTGGGTG 59.053 55.000 20.22 1.95 45.35 4.61
168 169 1.667236 CATATGACGCATGTGGGTGT 58.333 50.000 11.65 0.00 41.50 4.16
169 170 1.599071 CATATGACGCATGTGGGTGTC 59.401 52.381 11.65 0.00 45.99 3.67
170 171 0.107897 TATGACGCATGTGGGTGTCC 60.108 55.000 11.65 0.00 45.39 4.02
171 172 2.031919 GACGCATGTGGGTGTCCA 59.968 61.111 11.65 0.00 41.32 4.02
172 173 1.599518 GACGCATGTGGGTGTCCAA 60.600 57.895 11.65 0.00 46.04 3.53
173 174 1.852067 GACGCATGTGGGTGTCCAAC 61.852 60.000 11.65 0.00 46.04 3.77
174 175 1.896183 CGCATGTGGGTGTCCAACA 60.896 57.895 0.00 0.00 46.04 3.33
175 176 1.855213 CGCATGTGGGTGTCCAACAG 61.855 60.000 0.00 0.00 46.04 3.16
176 177 1.526575 GCATGTGGGTGTCCAACAGG 61.527 60.000 3.90 3.90 46.04 4.00
177 178 0.178992 CATGTGGGTGTCCAACAGGT 60.179 55.000 2.43 0.00 46.04 4.00
178 179 0.555769 ATGTGGGTGTCCAACAGGTT 59.444 50.000 2.43 0.00 46.04 3.50
179 180 0.333312 TGTGGGTGTCCAACAGGTTT 59.667 50.000 0.00 0.00 46.04 3.27
180 181 1.029681 GTGGGTGTCCAACAGGTTTC 58.970 55.000 0.00 0.00 46.04 2.78
181 182 0.626382 TGGGTGTCCAACAGGTTTCA 59.374 50.000 0.00 0.00 40.73 2.69
182 183 1.029681 GGGTGTCCAACAGGTTTCAC 58.970 55.000 0.00 0.00 0.00 3.18
183 184 1.029681 GGTGTCCAACAGGTTTCACC 58.970 55.000 12.04 12.04 38.99 4.02
184 185 0.661020 GTGTCCAACAGGTTTCACCG 59.339 55.000 0.00 0.00 44.90 4.94
185 186 0.542333 TGTCCAACAGGTTTCACCGA 59.458 50.000 0.00 0.00 44.90 4.69
186 187 1.065345 TGTCCAACAGGTTTCACCGAA 60.065 47.619 0.00 0.00 44.90 4.30
187 188 2.018515 GTCCAACAGGTTTCACCGAAA 58.981 47.619 0.00 0.00 44.90 3.46
188 189 2.424246 GTCCAACAGGTTTCACCGAAAA 59.576 45.455 0.00 0.00 44.90 2.29
189 190 2.685897 TCCAACAGGTTTCACCGAAAAG 59.314 45.455 0.00 0.00 44.90 2.27
190 191 2.425668 CCAACAGGTTTCACCGAAAAGT 59.574 45.455 0.00 0.00 44.90 2.66
191 192 3.488553 CCAACAGGTTTCACCGAAAAGTC 60.489 47.826 0.00 0.00 44.90 3.01
192 193 3.277142 ACAGGTTTCACCGAAAAGTCT 57.723 42.857 0.00 0.00 44.90 3.24
193 194 4.411256 ACAGGTTTCACCGAAAAGTCTA 57.589 40.909 0.00 0.00 44.90 2.59
194 195 4.377897 ACAGGTTTCACCGAAAAGTCTAG 58.622 43.478 0.00 0.00 44.90 2.43
195 196 3.746492 CAGGTTTCACCGAAAAGTCTAGG 59.254 47.826 0.00 0.00 44.90 3.02
196 197 3.390311 AGGTTTCACCGAAAAGTCTAGGT 59.610 43.478 0.00 0.00 44.90 3.08
197 198 4.590222 AGGTTTCACCGAAAAGTCTAGGTA 59.410 41.667 0.00 0.00 44.90 3.08
198 199 5.070847 AGGTTTCACCGAAAAGTCTAGGTAA 59.929 40.000 0.00 0.00 44.90 2.85
199 200 5.936372 GGTTTCACCGAAAAGTCTAGGTAAT 59.064 40.000 0.00 0.00 33.14 1.89
200 201 7.038799 AGGTTTCACCGAAAAGTCTAGGTAATA 60.039 37.037 0.00 0.00 44.90 0.98
201 202 7.277319 GGTTTCACCGAAAAGTCTAGGTAATAG 59.723 40.741 0.00 0.00 33.14 1.73
202 203 7.472334 TTCACCGAAAAGTCTAGGTAATAGT 57.528 36.000 0.00 0.00 34.83 2.12
203 204 8.579850 TTCACCGAAAAGTCTAGGTAATAGTA 57.420 34.615 0.00 0.00 34.83 1.82
204 205 7.989826 TCACCGAAAAGTCTAGGTAATAGTAC 58.010 38.462 0.00 0.00 34.83 2.73
220 221 8.247666 GTAATAGTACCAACTTCATAGGTCCT 57.752 38.462 0.00 0.00 37.15 3.85
221 222 7.750947 AATAGTACCAACTTCATAGGTCCTT 57.249 36.000 0.00 0.00 37.15 3.36
222 223 8.849543 AATAGTACCAACTTCATAGGTCCTTA 57.150 34.615 0.00 0.00 37.15 2.69
223 224 8.849543 ATAGTACCAACTTCATAGGTCCTTAA 57.150 34.615 0.00 0.00 37.15 1.85
224 225 7.184067 AGTACCAACTTCATAGGTCCTTAAG 57.816 40.000 0.00 1.77 36.87 1.85
225 226 5.437191 ACCAACTTCATAGGTCCTTAAGG 57.563 43.478 15.98 15.98 0.00 2.69
226 227 4.200092 CCAACTTCATAGGTCCTTAAGGC 58.800 47.826 17.32 11.59 34.44 4.35
227 228 4.200092 CAACTTCATAGGTCCTTAAGGCC 58.800 47.826 17.32 19.56 34.44 5.19
228 229 3.460825 ACTTCATAGGTCCTTAAGGCCA 58.539 45.455 26.80 17.36 34.96 5.36
229 230 3.200165 ACTTCATAGGTCCTTAAGGCCAC 59.800 47.826 26.80 17.56 34.96 5.01
230 231 2.840511 TCATAGGTCCTTAAGGCCACA 58.159 47.619 26.80 18.28 34.96 4.17
231 232 3.393687 TCATAGGTCCTTAAGGCCACAT 58.606 45.455 26.80 17.65 34.96 3.21
232 233 3.136443 TCATAGGTCCTTAAGGCCACATG 59.864 47.826 26.80 25.59 34.96 3.21
233 234 1.372501 AGGTCCTTAAGGCCACATGT 58.627 50.000 26.80 10.97 34.96 3.21
234 235 1.710809 AGGTCCTTAAGGCCACATGTT 59.289 47.619 26.80 10.43 34.96 2.71
235 236 2.110011 AGGTCCTTAAGGCCACATGTTT 59.890 45.455 26.80 9.89 34.96 2.83
236 237 3.332485 AGGTCCTTAAGGCCACATGTTTA 59.668 43.478 26.80 3.51 34.96 2.01
237 238 3.694566 GGTCCTTAAGGCCACATGTTTAG 59.305 47.826 22.72 0.00 33.44 1.85
238 239 3.694566 GTCCTTAAGGCCACATGTTTAGG 59.305 47.826 17.32 2.66 34.44 2.69
239 240 3.023832 CCTTAAGGCCACATGTTTAGGG 58.976 50.000 9.00 0.00 0.00 3.53
240 241 3.563479 CCTTAAGGCCACATGTTTAGGGT 60.563 47.826 9.00 0.00 0.00 4.34
241 242 2.694616 AAGGCCACATGTTTAGGGTT 57.305 45.000 5.01 0.00 0.00 4.11
242 243 1.923356 AGGCCACATGTTTAGGGTTG 58.077 50.000 5.01 0.00 0.00 3.77
243 244 0.246360 GGCCACATGTTTAGGGTTGC 59.754 55.000 0.00 0.00 0.00 4.17
244 245 0.965439 GCCACATGTTTAGGGTTGCA 59.035 50.000 0.00 0.00 0.00 4.08
245 246 1.067635 GCCACATGTTTAGGGTTGCAG 60.068 52.381 0.00 0.00 0.00 4.41
246 247 1.545582 CCACATGTTTAGGGTTGCAGG 59.454 52.381 0.00 0.00 0.00 4.85
247 248 2.513753 CACATGTTTAGGGTTGCAGGA 58.486 47.619 0.00 0.00 0.00 3.86
248 249 2.890311 CACATGTTTAGGGTTGCAGGAA 59.110 45.455 0.00 0.00 0.00 3.36
249 250 2.890945 ACATGTTTAGGGTTGCAGGAAC 59.109 45.455 0.00 0.00 0.00 3.62
250 251 2.738587 TGTTTAGGGTTGCAGGAACA 57.261 45.000 7.16 0.00 36.12 3.18
251 252 3.237268 TGTTTAGGGTTGCAGGAACAT 57.763 42.857 7.16 0.00 36.12 2.71
252 253 4.374689 TGTTTAGGGTTGCAGGAACATA 57.625 40.909 7.16 0.00 36.12 2.29
253 254 4.331968 TGTTTAGGGTTGCAGGAACATAG 58.668 43.478 7.16 0.00 36.12 2.23
254 255 4.042311 TGTTTAGGGTTGCAGGAACATAGA 59.958 41.667 7.16 0.00 36.12 1.98
255 256 5.193679 GTTTAGGGTTGCAGGAACATAGAT 58.806 41.667 7.16 0.00 36.12 1.98
256 257 3.287867 AGGGTTGCAGGAACATAGATG 57.712 47.619 7.16 0.00 36.12 2.90
257 258 2.092212 AGGGTTGCAGGAACATAGATGG 60.092 50.000 7.16 0.00 36.12 3.51
258 259 2.301346 GGTTGCAGGAACATAGATGGG 58.699 52.381 7.16 0.00 36.12 4.00
259 260 2.301346 GTTGCAGGAACATAGATGGGG 58.699 52.381 0.00 0.00 34.35 4.96
260 261 0.183492 TGCAGGAACATAGATGGGGC 59.817 55.000 0.00 0.00 0.00 5.80
261 262 0.183492 GCAGGAACATAGATGGGGCA 59.817 55.000 0.00 0.00 0.00 5.36
262 263 1.410083 GCAGGAACATAGATGGGGCAA 60.410 52.381 0.00 0.00 0.00 4.52
263 264 2.579873 CAGGAACATAGATGGGGCAAG 58.420 52.381 0.00 0.00 0.00 4.01
264 265 1.133668 AGGAACATAGATGGGGCAAGC 60.134 52.381 0.00 0.00 0.00 4.01
265 266 1.133668 GGAACATAGATGGGGCAAGCT 60.134 52.381 0.00 0.00 0.00 3.74
266 267 2.225467 GAACATAGATGGGGCAAGCTC 58.775 52.381 0.00 0.00 0.00 4.09
267 268 1.516110 ACATAGATGGGGCAAGCTCT 58.484 50.000 0.00 0.00 0.00 4.09
268 269 1.849039 ACATAGATGGGGCAAGCTCTT 59.151 47.619 0.00 0.00 0.00 2.85
269 270 2.228059 CATAGATGGGGCAAGCTCTTG 58.772 52.381 5.31 5.31 43.14 3.02
270 271 0.548031 TAGATGGGGCAAGCTCTTGG 59.452 55.000 11.15 0.00 40.74 3.61
271 272 1.000396 GATGGGGCAAGCTCTTGGT 60.000 57.895 11.15 0.00 40.74 3.67
272 273 1.304713 ATGGGGCAAGCTCTTGGTG 60.305 57.895 11.15 0.00 40.74 4.17
273 274 2.677875 GGGGCAAGCTCTTGGTGG 60.678 66.667 11.15 0.00 40.74 4.61
274 275 3.376918 GGGCAAGCTCTTGGTGGC 61.377 66.667 11.15 0.42 40.74 5.01
275 276 3.741476 GGCAAGCTCTTGGTGGCG 61.741 66.667 11.15 0.00 41.29 5.69
276 277 4.410743 GCAAGCTCTTGGTGGCGC 62.411 66.667 11.15 0.00 40.74 6.53
277 278 2.670934 CAAGCTCTTGGTGGCGCT 60.671 61.111 7.64 0.00 36.95 5.92
278 279 2.359230 AAGCTCTTGGTGGCGCTC 60.359 61.111 7.64 0.23 31.30 5.03
279 280 2.888447 AAGCTCTTGGTGGCGCTCT 61.888 57.895 7.64 0.00 31.30 4.09
280 281 2.359230 GCTCTTGGTGGCGCTCTT 60.359 61.111 7.64 0.00 0.00 2.85
281 282 2.684843 GCTCTTGGTGGCGCTCTTG 61.685 63.158 7.64 0.00 0.00 3.02
282 283 2.032528 TCTTGGTGGCGCTCTTGG 59.967 61.111 7.64 0.00 0.00 3.61
283 284 2.032528 CTTGGTGGCGCTCTTGGA 59.967 61.111 7.64 0.00 0.00 3.53
284 285 1.600636 CTTGGTGGCGCTCTTGGAA 60.601 57.895 7.64 0.00 0.00 3.53
285 286 1.856265 CTTGGTGGCGCTCTTGGAAC 61.856 60.000 7.64 0.00 0.00 3.62
286 287 3.056328 GGTGGCGCTCTTGGAACC 61.056 66.667 7.64 0.35 0.00 3.62
287 288 3.056328 GTGGCGCTCTTGGAACCC 61.056 66.667 7.64 0.00 0.00 4.11
288 289 3.565214 TGGCGCTCTTGGAACCCA 61.565 61.111 7.64 0.00 0.00 4.51
289 290 2.747855 GGCGCTCTTGGAACCCAG 60.748 66.667 7.64 0.00 33.81 4.45
290 291 2.032681 GCGCTCTTGGAACCCAGT 59.967 61.111 0.00 0.00 33.81 4.00
291 292 2.035442 GCGCTCTTGGAACCCAGTC 61.035 63.158 0.00 0.00 33.81 3.51
292 293 1.371183 CGCTCTTGGAACCCAGTCA 59.629 57.895 0.00 0.00 33.81 3.41
293 294 0.951040 CGCTCTTGGAACCCAGTCAC 60.951 60.000 0.00 0.00 33.81 3.67
294 295 0.108585 GCTCTTGGAACCCAGTCACA 59.891 55.000 0.00 0.00 33.81 3.58
295 296 1.884235 CTCTTGGAACCCAGTCACAC 58.116 55.000 0.00 0.00 33.81 3.82
304 305 1.412710 ACCCAGTCACACACACTACAG 59.587 52.381 0.00 0.00 0.00 2.74
305 306 1.502231 CCAGTCACACACACTACAGC 58.498 55.000 0.00 0.00 0.00 4.40
307 308 2.549926 CAGTCACACACACTACAGCAA 58.450 47.619 0.00 0.00 0.00 3.91
324 325 1.336240 GCAATCAGCTTCTTTGCCGTT 60.336 47.619 12.02 0.00 39.80 4.44
327 328 0.667993 TCAGCTTCTTTGCCGTTTGG 59.332 50.000 0.00 0.00 38.77 3.28
339 340 0.390603 CCGTTTGGCATGGTAGACGA 60.391 55.000 0.00 0.00 32.73 4.20
346 347 1.066430 GGCATGGTAGACGACAAAGGA 60.066 52.381 0.00 0.00 0.00 3.36
356 357 2.096248 ACGACAAAGGAACCAAAAGCA 58.904 42.857 0.00 0.00 0.00 3.91
361 362 2.052782 AAGGAACCAAAAGCAGACGT 57.947 45.000 0.00 0.00 0.00 4.34
366 367 2.844122 ACCAAAAGCAGACGTCAAAC 57.156 45.000 19.50 6.35 0.00 2.93
368 369 1.676006 CCAAAAGCAGACGTCAAACCT 59.324 47.619 19.50 4.93 0.00 3.50
376 377 0.234884 GACGTCAAACCTCTTTGCCG 59.765 55.000 11.55 0.00 42.91 5.69
386 387 1.733402 CTCTTTGCCGTTTGCCACCA 61.733 55.000 0.00 0.00 40.16 4.17
387 388 1.142748 CTTTGCCGTTTGCCACCAA 59.857 52.632 0.00 0.00 40.16 3.67
410 411 1.832167 AAAGCTGCCCGGCAAAGAA 60.832 52.632 14.45 0.00 38.41 2.52
411 412 1.398958 AAAGCTGCCCGGCAAAGAAA 61.399 50.000 14.45 0.00 38.41 2.52
413 414 2.259511 CTGCCCGGCAAAGAAAGC 59.740 61.111 14.45 0.00 38.41 3.51
414 415 2.203480 TGCCCGGCAAAGAAAGCT 60.203 55.556 10.50 0.00 34.76 3.74
416 417 1.241315 TGCCCGGCAAAGAAAGCTAC 61.241 55.000 10.50 0.00 34.76 3.58
423 424 3.666111 CGGCAAAGAAAGCTACGGTAAAC 60.666 47.826 0.00 0.00 0.00 2.01
424 425 3.501062 GGCAAAGAAAGCTACGGTAAACT 59.499 43.478 0.00 0.00 0.00 2.66
431 432 4.347360 AAGCTACGGTAAACTGGTTCTT 57.653 40.909 0.00 0.00 0.00 2.52
434 435 3.364664 GCTACGGTAAACTGGTTCTTTGC 60.365 47.826 0.00 0.00 0.00 3.68
436 437 1.069500 CGGTAAACTGGTTCTTTGCCG 60.069 52.381 6.11 6.11 45.99 5.69
439 440 1.029681 AAACTGGTTCTTTGCCGTCC 58.970 50.000 0.00 0.00 0.00 4.79
444 445 1.652563 GTTCTTTGCCGTCCGCTTT 59.347 52.632 0.00 0.00 38.78 3.51
445 446 0.385598 GTTCTTTGCCGTCCGCTTTC 60.386 55.000 0.00 0.00 38.78 2.62
448 449 0.951040 CTTTGCCGTCCGCTTTCTCT 60.951 55.000 0.00 0.00 38.78 3.10
466 497 3.192844 TCTCTAAGCGGACGACAAAGAAT 59.807 43.478 0.00 0.00 0.00 2.40
467 498 3.250744 TCTAAGCGGACGACAAAGAATG 58.749 45.455 0.00 0.00 0.00 2.67
478 509 3.495377 CGACAAAGAATGTGGACGGTAAA 59.505 43.478 0.00 0.00 44.12 2.01
479 510 4.153475 CGACAAAGAATGTGGACGGTAAAT 59.847 41.667 0.00 0.00 44.12 1.40
482 513 6.905578 ACAAAGAATGTGGACGGTAAATAAC 58.094 36.000 0.00 0.00 41.93 1.89
485 516 6.045072 AGAATGTGGACGGTAAATAACAGA 57.955 37.500 0.00 0.00 0.00 3.41
486 517 5.873164 AGAATGTGGACGGTAAATAACAGAC 59.127 40.000 0.00 0.00 0.00 3.51
487 518 3.577667 TGTGGACGGTAAATAACAGACG 58.422 45.455 0.00 0.00 0.00 4.18
488 519 3.005684 TGTGGACGGTAAATAACAGACGT 59.994 43.478 0.00 0.00 37.26 4.34
489 520 3.989817 GTGGACGGTAAATAACAGACGTT 59.010 43.478 0.00 0.00 39.24 3.99
490 521 5.160641 GTGGACGGTAAATAACAGACGTTA 58.839 41.667 0.00 0.00 41.73 3.18
491 522 5.287035 GTGGACGGTAAATAACAGACGTTAG 59.713 44.000 0.00 0.00 40.85 2.34
492 523 4.266265 GGACGGTAAATAACAGACGTTAGC 59.734 45.833 0.00 0.00 40.85 3.09
493 524 4.176271 ACGGTAAATAACAGACGTTAGCC 58.824 43.478 0.00 0.00 40.85 3.93
494 525 4.175516 CGGTAAATAACAGACGTTAGCCA 58.824 43.478 0.00 0.00 40.85 4.75
495 526 4.032104 CGGTAAATAACAGACGTTAGCCAC 59.968 45.833 0.00 0.00 40.85 5.01
496 527 4.931002 GGTAAATAACAGACGTTAGCCACA 59.069 41.667 0.00 0.00 40.85 4.17
497 528 5.583457 GGTAAATAACAGACGTTAGCCACAT 59.417 40.000 0.00 0.00 40.85 3.21
498 529 6.093082 GGTAAATAACAGACGTTAGCCACATT 59.907 38.462 0.00 0.00 40.85 2.71
499 530 7.278424 GGTAAATAACAGACGTTAGCCACATTA 59.722 37.037 0.00 0.00 40.85 1.90
500 531 6.903883 AATAACAGACGTTAGCCACATTAG 57.096 37.500 0.00 0.00 40.85 1.73
501 532 3.247006 ACAGACGTTAGCCACATTAGG 57.753 47.619 0.00 0.00 0.00 2.69
502 533 2.565834 ACAGACGTTAGCCACATTAGGT 59.434 45.455 0.00 0.00 0.00 3.08
529 560 3.741476 CAGCCTTTGCCGTCTGCC 61.741 66.667 0.00 0.00 40.16 4.85
558 589 1.336755 GCAAACGTCCACATCCTTTGT 59.663 47.619 0.00 0.00 39.91 2.83
559 590 2.604614 GCAAACGTCCACATCCTTTGTC 60.605 50.000 0.00 0.00 36.00 3.18
606 637 4.763793 CCAAATGGTATAGCTCCCAGATTG 59.236 45.833 3.20 14.81 33.39 2.67
613 644 1.001641 GCTCCCAGATTGCACAGGT 60.002 57.895 0.00 0.00 0.00 4.00
615 646 1.457346 CTCCCAGATTGCACAGGTTC 58.543 55.000 0.00 0.00 0.00 3.62
626 657 2.111043 CAGGTTCCTGCCACGTGT 59.889 61.111 15.65 0.00 0.00 4.49
639 670 1.300697 ACGTGTCCTCTTTGCCGTC 60.301 57.895 0.00 0.00 0.00 4.79
640 671 1.300620 CGTGTCCTCTTTGCCGTCA 60.301 57.895 0.00 0.00 0.00 4.35
641 672 1.284982 CGTGTCCTCTTTGCCGTCAG 61.285 60.000 0.00 0.00 0.00 3.51
644 675 0.033504 GTCCTCTTTGCCGTCAGTGA 59.966 55.000 0.00 0.00 0.00 3.41
658 689 4.795970 GTCAGTGACAGACGACAAATTT 57.204 40.909 18.54 0.00 32.02 1.82
671 702 2.035321 GACAAATTTCCCTTTGCCGTCA 59.965 45.455 0.00 0.00 39.26 4.35
676 707 1.701031 TTCCCTTTGCCGTCAGTGGA 61.701 55.000 0.00 0.00 0.00 4.02
764 795 9.448438 TTTCACAGCAAATAGATTATACACAGT 57.552 29.630 0.00 0.00 0.00 3.55
814 845 5.813383 AGATGAAGAAGACACCAACATCAT 58.187 37.500 0.00 0.00 36.26 2.45
815 846 5.646793 AGATGAAGAAGACACCAACATCATG 59.353 40.000 0.00 0.00 36.26 3.07
817 848 4.999311 TGAAGAAGACACCAACATCATGAG 59.001 41.667 0.09 0.00 0.00 2.90
820 851 2.708051 AGACACCAACATCATGAGCAG 58.292 47.619 0.09 0.00 0.00 4.24
822 853 3.054582 AGACACCAACATCATGAGCAGAT 60.055 43.478 0.09 0.00 0.00 2.90
826 857 4.035324 CACCAACATCATGAGCAGATCTTC 59.965 45.833 0.09 0.00 0.00 2.87
831 863 7.313646 CAACATCATGAGCAGATCTTCTTTTT 58.686 34.615 0.09 0.00 0.00 1.94
832 864 8.456471 CAACATCATGAGCAGATCTTCTTTTTA 58.544 33.333 0.09 0.00 0.00 1.52
833 865 8.749026 ACATCATGAGCAGATCTTCTTTTTAT 57.251 30.769 0.09 0.00 0.00 1.40
834 866 9.842775 ACATCATGAGCAGATCTTCTTTTTATA 57.157 29.630 0.09 0.00 0.00 0.98
838 870 9.947669 CATGAGCAGATCTTCTTTTTATAAAGG 57.052 33.333 0.00 0.00 40.93 3.11
865 897 7.310609 GGGGGAATACACAGTACAAAGTTACTA 60.311 40.741 0.00 0.00 0.00 1.82
1049 1081 6.914665 TGATGGACAATATCAAAGAAGGGAT 58.085 36.000 0.00 0.00 31.98 3.85
1088 1120 5.018809 ACCACATATCAAACCAGAAGCAAT 58.981 37.500 0.00 0.00 0.00 3.56
1096 1128 0.613260 ACCAGAAGCAATCGCACCTA 59.387 50.000 0.00 0.00 42.27 3.08
1105 1137 2.422597 CAATCGCACCTACAAAGTCCA 58.577 47.619 0.00 0.00 0.00 4.02
1107 1139 0.753867 TCGCACCTACAAAGTCCACA 59.246 50.000 0.00 0.00 0.00 4.17
1130 1162 2.970640 ACTCTTTACGGTTCACCCTCTT 59.029 45.455 0.00 0.00 0.00 2.85
1158 1190 4.826733 ACAAACAAGATGATAGTGCCAACA 59.173 37.500 0.00 0.00 0.00 3.33
1172 1204 4.118410 GTGCCAACAAAACATGTCAATCA 58.882 39.130 0.00 0.00 42.99 2.57
1188 1220 3.509575 TCAATCACAAAGTATGCCCCAAC 59.490 43.478 0.00 0.00 0.00 3.77
1258 1290 0.742505 TTGTTGGAGTGACGTCTCGT 59.257 50.000 17.92 0.39 45.10 4.18
1259 1291 0.030235 TGTTGGAGTGACGTCTCGTG 59.970 55.000 17.92 0.00 41.37 4.35
1295 1327 2.867624 TGGCTGCAAAGAAGAAGACAT 58.132 42.857 0.50 0.00 0.00 3.06
1360 1393 3.136763 GACGCCATGATTGACATCTCAT 58.863 45.455 0.00 0.00 37.07 2.90
1399 1432 2.231964 GGAGCTTTGAACATGCCATCAA 59.768 45.455 5.38 5.38 33.93 2.57
1551 1585 2.464782 AGTCCTGCATGAGATCACTGA 58.535 47.619 0.00 0.00 0.00 3.41
1606 1641 0.108138 GCTAACCAGCGATCACACCT 60.108 55.000 0.00 0.00 38.22 4.00
1616 1651 1.541889 CGATCACACCTCCATGATGGG 60.542 57.143 12.26 2.25 38.32 4.00
1636 1671 2.349590 GCAACCCATGAGGCAAAAATC 58.650 47.619 0.00 0.00 40.58 2.17
1707 1743 2.612672 CAGTGCCATATGAGTTGCAGAG 59.387 50.000 3.65 0.00 33.80 3.35
1709 1745 0.950116 GCCATATGAGTTGCAGAGGC 59.050 55.000 3.65 0.00 41.68 4.70
1782 1818 6.055588 ACCATACATAGCAAGTTCCACATAC 58.944 40.000 0.00 0.00 0.00 2.39
1784 1820 6.203530 CCATACATAGCAAGTTCCACATACAG 59.796 42.308 0.00 0.00 0.00 2.74
1834 1870 6.779049 AGTTTCATCCAACCATACATGCATAT 59.221 34.615 0.00 0.00 0.00 1.78
1835 1871 7.944000 AGTTTCATCCAACCATACATGCATATA 59.056 33.333 0.00 0.00 0.00 0.86
1836 1872 8.742777 GTTTCATCCAACCATACATGCATATAT 58.257 33.333 0.00 0.00 0.00 0.86
1837 1873 9.972106 TTTCATCCAACCATACATGCATATATA 57.028 29.630 0.00 0.00 0.00 0.86
1846 1882 7.928167 ACCATACATGCATATATAGTTCATCGG 59.072 37.037 0.00 0.00 0.00 4.18
1862 1898 6.710744 AGTTCATCGGTACAAAAGAAACAGAT 59.289 34.615 0.00 0.00 0.00 2.90
1868 1904 6.428771 TCGGTACAAAAGAAACAGATAAAGGG 59.571 38.462 0.00 0.00 0.00 3.95
1877 1913 9.807921 AAAGAAACAGATAAAGGGATAACAAGA 57.192 29.630 0.00 0.00 0.00 3.02
1898 1934 2.097825 ACTCCATCAATGCAAGCTTCC 58.902 47.619 0.00 0.00 0.00 3.46
1903 1939 0.874390 TCAATGCAAGCTTCCGTGAC 59.126 50.000 0.00 0.00 0.00 3.67
1993 2029 9.196552 GAAGAAGAAGAAGAAGAAGAAGAAGAG 57.803 37.037 0.00 0.00 0.00 2.85
1994 2030 7.670364 AGAAGAAGAAGAAGAAGAAGAAGAGG 58.330 38.462 0.00 0.00 0.00 3.69
1995 2031 7.508977 AGAAGAAGAAGAAGAAGAAGAAGAGGA 59.491 37.037 0.00 0.00 0.00 3.71
1996 2032 7.610580 AGAAGAAGAAGAAGAAGAAGAGGAA 57.389 36.000 0.00 0.00 0.00 3.36
1997 2033 7.670364 AGAAGAAGAAGAAGAAGAAGAGGAAG 58.330 38.462 0.00 0.00 0.00 3.46
1998 2034 7.508977 AGAAGAAGAAGAAGAAGAAGAGGAAGA 59.491 37.037 0.00 0.00 0.00 2.87
1999 2035 7.610580 AGAAGAAGAAGAAGAAGAGGAAGAA 57.389 36.000 0.00 0.00 0.00 2.52
2000 2036 7.670364 AGAAGAAGAAGAAGAAGAGGAAGAAG 58.330 38.462 0.00 0.00 0.00 2.85
2061 2100 6.569179 TGAGCCAACTTAGGTAAAAATGAC 57.431 37.500 0.00 0.00 0.00 3.06
2101 2142 5.765176 AGGTAAAAACAACATTTACGAGCC 58.235 37.500 0.00 0.00 41.81 4.70
2114 2155 6.428771 ACATTTACGAGCCAACTTAGCTAAAA 59.571 34.615 7.74 0.00 41.75 1.52
2139 2180 5.885912 TGGATCATTTTGGAACTAACCTAGC 59.114 40.000 0.00 0.00 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.413077 ACCTCCTATTTAGCGACCTGC 59.587 52.381 0.00 0.00 46.98 4.85
19 20 2.959707 AGACCTCCTATTTAGCGACCTG 59.040 50.000 0.00 0.00 0.00 4.00
20 21 3.224269 GAGACCTCCTATTTAGCGACCT 58.776 50.000 0.00 0.00 0.00 3.85
21 22 2.957006 TGAGACCTCCTATTTAGCGACC 59.043 50.000 0.00 0.00 0.00 4.79
22 23 4.857509 ATGAGACCTCCTATTTAGCGAC 57.142 45.455 0.00 0.00 0.00 5.19
23 24 8.645814 TTATTATGAGACCTCCTATTTAGCGA 57.354 34.615 0.00 0.00 0.00 4.93
24 25 9.141400 GTTTATTATGAGACCTCCTATTTAGCG 57.859 37.037 0.00 0.00 0.00 4.26
25 26 9.438228 GGTTTATTATGAGACCTCCTATTTAGC 57.562 37.037 0.00 0.00 0.00 3.09
26 27 9.640963 CGGTTTATTATGAGACCTCCTATTTAG 57.359 37.037 0.00 0.00 0.00 1.85
27 28 8.591072 CCGGTTTATTATGAGACCTCCTATTTA 58.409 37.037 0.00 0.00 0.00 1.40
28 29 7.291651 TCCGGTTTATTATGAGACCTCCTATTT 59.708 37.037 0.00 0.00 0.00 1.40
29 30 6.785963 TCCGGTTTATTATGAGACCTCCTATT 59.214 38.462 0.00 0.00 0.00 1.73
30 31 6.320518 TCCGGTTTATTATGAGACCTCCTAT 58.679 40.000 0.00 0.00 0.00 2.57
31 32 5.708544 TCCGGTTTATTATGAGACCTCCTA 58.291 41.667 0.00 0.00 0.00 2.94
32 33 4.553678 TCCGGTTTATTATGAGACCTCCT 58.446 43.478 0.00 0.00 0.00 3.69
33 34 4.262506 CCTCCGGTTTATTATGAGACCTCC 60.263 50.000 0.00 0.00 0.00 4.30
34 35 4.587684 TCCTCCGGTTTATTATGAGACCTC 59.412 45.833 0.00 0.00 0.00 3.85
35 36 4.553678 TCCTCCGGTTTATTATGAGACCT 58.446 43.478 0.00 0.00 0.00 3.85
36 37 4.950205 TCCTCCGGTTTATTATGAGACC 57.050 45.455 0.00 0.00 0.00 3.85
37 38 7.046033 TCTTTTCCTCCGGTTTATTATGAGAC 58.954 38.462 0.00 0.00 0.00 3.36
38 39 7.190335 TCTTTTCCTCCGGTTTATTATGAGA 57.810 36.000 0.00 0.00 0.00 3.27
39 40 8.989980 GTATCTTTTCCTCCGGTTTATTATGAG 58.010 37.037 0.00 0.00 0.00 2.90
40 41 8.711170 AGTATCTTTTCCTCCGGTTTATTATGA 58.289 33.333 0.00 0.00 0.00 2.15
41 42 8.774586 CAGTATCTTTTCCTCCGGTTTATTATG 58.225 37.037 0.00 0.00 0.00 1.90
42 43 7.444487 GCAGTATCTTTTCCTCCGGTTTATTAT 59.556 37.037 0.00 0.00 0.00 1.28
43 44 6.764560 GCAGTATCTTTTCCTCCGGTTTATTA 59.235 38.462 0.00 0.00 0.00 0.98
44 45 5.589050 GCAGTATCTTTTCCTCCGGTTTATT 59.411 40.000 0.00 0.00 0.00 1.40
45 46 5.123936 GCAGTATCTTTTCCTCCGGTTTAT 58.876 41.667 0.00 0.00 0.00 1.40
46 47 4.020039 TGCAGTATCTTTTCCTCCGGTTTA 60.020 41.667 0.00 0.00 0.00 2.01
47 48 3.244770 TGCAGTATCTTTTCCTCCGGTTT 60.245 43.478 0.00 0.00 0.00 3.27
48 49 2.304761 TGCAGTATCTTTTCCTCCGGTT 59.695 45.455 0.00 0.00 0.00 4.44
49 50 1.906574 TGCAGTATCTTTTCCTCCGGT 59.093 47.619 0.00 0.00 0.00 5.28
50 51 2.093447 ACTGCAGTATCTTTTCCTCCGG 60.093 50.000 20.16 0.00 0.00 5.14
51 52 3.252974 ACTGCAGTATCTTTTCCTCCG 57.747 47.619 20.16 0.00 0.00 4.63
52 53 3.127721 GCAACTGCAGTATCTTTTCCTCC 59.872 47.826 22.01 0.00 41.59 4.30
53 54 4.006319 AGCAACTGCAGTATCTTTTCCTC 58.994 43.478 22.01 0.26 45.16 3.71
54 55 3.755378 CAGCAACTGCAGTATCTTTTCCT 59.245 43.478 22.01 0.00 45.16 3.36
55 56 4.088823 CAGCAACTGCAGTATCTTTTCC 57.911 45.455 22.01 0.00 45.16 3.13
68 69 0.740149 TGGTTCAAGTGCAGCAACTG 59.260 50.000 0.00 0.00 34.12 3.16
69 70 1.473258 TTGGTTCAAGTGCAGCAACT 58.527 45.000 0.00 0.00 0.00 3.16
70 71 1.926510 GTTTGGTTCAAGTGCAGCAAC 59.073 47.619 0.00 0.00 29.29 4.17
71 72 1.547820 TGTTTGGTTCAAGTGCAGCAA 59.452 42.857 0.00 0.00 0.00 3.91
72 73 1.180907 TGTTTGGTTCAAGTGCAGCA 58.819 45.000 0.00 0.00 0.00 4.41
73 74 2.292103 TTGTTTGGTTCAAGTGCAGC 57.708 45.000 0.00 0.00 0.00 5.25
74 75 5.186996 AGTATTGTTTGGTTCAAGTGCAG 57.813 39.130 0.00 0.00 0.00 4.41
75 76 6.701145 TTAGTATTGTTTGGTTCAAGTGCA 57.299 33.333 0.00 0.00 0.00 4.57
76 77 7.593825 AGATTAGTATTGTTTGGTTCAAGTGC 58.406 34.615 0.00 0.00 0.00 4.40
77 78 9.398170 CAAGATTAGTATTGTTTGGTTCAAGTG 57.602 33.333 0.00 0.00 0.00 3.16
78 79 9.131791 ACAAGATTAGTATTGTTTGGTTCAAGT 57.868 29.630 0.00 0.00 36.42 3.16
79 80 9.965824 AACAAGATTAGTATTGTTTGGTTCAAG 57.034 29.630 5.26 0.00 44.82 3.02
84 85 9.010029 CCTGTAACAAGATTAGTATTGTTTGGT 57.990 33.333 14.94 0.00 44.82 3.67
85 86 8.458843 CCCTGTAACAAGATTAGTATTGTTTGG 58.541 37.037 14.94 13.78 44.82 3.28
86 87 7.968405 GCCCTGTAACAAGATTAGTATTGTTTG 59.032 37.037 14.94 7.31 44.82 2.93
87 88 7.122204 GGCCCTGTAACAAGATTAGTATTGTTT 59.878 37.037 14.94 2.14 44.82 2.83
89 90 6.120220 GGCCCTGTAACAAGATTAGTATTGT 58.880 40.000 0.00 0.00 41.26 2.71
90 91 6.119536 TGGCCCTGTAACAAGATTAGTATTG 58.880 40.000 0.00 0.00 32.88 1.90
91 92 6.321821 TGGCCCTGTAACAAGATTAGTATT 57.678 37.500 0.00 0.00 0.00 1.89
92 93 5.968676 TGGCCCTGTAACAAGATTAGTAT 57.031 39.130 0.00 0.00 0.00 2.12
93 94 5.493809 GTTGGCCCTGTAACAAGATTAGTA 58.506 41.667 0.00 0.00 0.00 1.82
94 95 4.332828 GTTGGCCCTGTAACAAGATTAGT 58.667 43.478 0.00 0.00 0.00 2.24
95 96 3.694566 GGTTGGCCCTGTAACAAGATTAG 59.305 47.826 0.00 0.00 0.00 1.73
96 97 3.692690 GGTTGGCCCTGTAACAAGATTA 58.307 45.455 0.00 0.00 0.00 1.75
97 98 2.525368 GGTTGGCCCTGTAACAAGATT 58.475 47.619 0.00 0.00 0.00 2.40
98 99 2.215942 GGTTGGCCCTGTAACAAGAT 57.784 50.000 0.00 0.00 0.00 2.40
99 100 3.737702 GGTTGGCCCTGTAACAAGA 57.262 52.632 0.00 0.00 0.00 3.02
110 111 2.696759 CGACCGAATTGGGTTGGCC 61.697 63.158 17.10 0.00 44.64 5.36
111 112 2.874751 CGACCGAATTGGGTTGGC 59.125 61.111 17.10 3.27 44.64 4.52
112 113 2.696759 GGCGACCGAATTGGGTTGG 61.697 63.158 23.86 15.42 44.64 3.77
113 114 2.696759 GGGCGACCGAATTGGGTTG 61.697 63.158 19.82 19.82 44.64 3.77
114 115 2.360726 GGGCGACCGAATTGGGTT 60.361 61.111 13.89 0.00 44.64 4.11
129 130 4.368808 CAACACAACGCTCGCGGG 62.369 66.667 16.18 2.60 44.69 6.13
130 131 3.558282 GACAACACAACGCTCGCGG 62.558 63.158 16.18 0.00 44.69 6.46
131 132 2.128128 GACAACACAACGCTCGCG 60.128 61.111 10.06 10.06 46.03 5.87
132 133 1.841663 ATGGACAACACAACGCTCGC 61.842 55.000 0.00 0.00 0.00 5.03
133 134 1.424403 TATGGACAACACAACGCTCG 58.576 50.000 0.00 0.00 0.00 5.03
134 135 3.000041 TCATATGGACAACACAACGCTC 59.000 45.455 2.13 0.00 0.00 5.03
135 136 2.742053 GTCATATGGACAACACAACGCT 59.258 45.455 2.13 0.00 46.19 5.07
136 137 3.117434 GTCATATGGACAACACAACGC 57.883 47.619 2.13 0.00 46.19 4.84
141 142 6.488570 CCACATGCGTCATATGGACAACAC 62.489 50.000 10.47 0.00 40.54 3.32
142 143 4.481390 CCACATGCGTCATATGGACAACA 61.481 47.826 10.47 2.48 40.54 3.33
143 144 2.032054 CCACATGCGTCATATGGACAAC 59.968 50.000 10.47 0.00 40.54 3.32
144 145 2.287769 CCACATGCGTCATATGGACAA 58.712 47.619 10.47 0.00 40.54 3.18
145 146 1.474855 CCCACATGCGTCATATGGACA 60.475 52.381 15.78 0.00 40.54 4.02
146 147 1.229428 CCCACATGCGTCATATGGAC 58.771 55.000 15.78 0.00 40.54 4.02
147 148 0.836606 ACCCACATGCGTCATATGGA 59.163 50.000 15.78 0.00 40.54 3.41
148 149 0.946528 CACCCACATGCGTCATATGG 59.053 55.000 9.37 9.37 38.09 2.74
149 150 1.599071 GACACCCACATGCGTCATATG 59.401 52.381 0.00 0.00 0.00 1.78
150 151 1.475034 GGACACCCACATGCGTCATAT 60.475 52.381 0.00 0.00 0.00 1.78
151 152 0.107897 GGACACCCACATGCGTCATA 60.108 55.000 0.00 0.00 0.00 2.15
152 153 1.377202 GGACACCCACATGCGTCAT 60.377 57.895 0.00 0.00 0.00 3.06
153 154 2.031919 GGACACCCACATGCGTCA 59.968 61.111 0.00 0.00 0.00 4.35
154 155 1.599518 TTGGACACCCACATGCGTC 60.600 57.895 0.00 0.00 43.41 5.19
155 156 1.896660 GTTGGACACCCACATGCGT 60.897 57.895 0.00 0.00 43.41 5.24
156 157 1.855213 CTGTTGGACACCCACATGCG 61.855 60.000 0.00 0.00 43.41 4.73
157 158 1.526575 CCTGTTGGACACCCACATGC 61.527 60.000 0.00 0.00 43.41 4.06
158 159 0.178992 ACCTGTTGGACACCCACATG 60.179 55.000 0.00 0.00 43.41 3.21
159 160 0.555769 AACCTGTTGGACACCCACAT 59.444 50.000 0.00 0.00 43.41 3.21
160 161 0.333312 AAACCTGTTGGACACCCACA 59.667 50.000 0.00 0.00 43.41 4.17
161 162 1.029681 GAAACCTGTTGGACACCCAC 58.970 55.000 0.00 0.00 43.41 4.61
162 163 0.626382 TGAAACCTGTTGGACACCCA 59.374 50.000 0.00 0.00 41.64 4.51
163 164 1.029681 GTGAAACCTGTTGGACACCC 58.970 55.000 0.00 0.00 37.04 4.61
176 177 7.816513 ACTATTACCTAGACTTTTCGGTGAAAC 59.183 37.037 0.00 0.00 30.83 2.78
177 178 7.899973 ACTATTACCTAGACTTTTCGGTGAAA 58.100 34.615 0.00 0.00 0.00 2.69
178 179 7.472334 ACTATTACCTAGACTTTTCGGTGAA 57.528 36.000 0.00 0.00 0.00 3.18
179 180 7.067494 GGTACTATTACCTAGACTTTTCGGTGA 59.933 40.741 2.07 0.00 44.24 4.02
180 181 7.199078 GGTACTATTACCTAGACTTTTCGGTG 58.801 42.308 2.07 0.00 44.24 4.94
181 182 7.340122 GGTACTATTACCTAGACTTTTCGGT 57.660 40.000 2.07 0.00 44.24 4.69
194 195 7.289549 AGGACCTATGAAGTTGGTACTATTACC 59.710 40.741 2.33 2.33 43.98 2.85
195 196 8.247666 AGGACCTATGAAGTTGGTACTATTAC 57.752 38.462 0.00 0.00 43.98 1.89
196 197 8.849543 AAGGACCTATGAAGTTGGTACTATTA 57.150 34.615 0.00 0.00 44.89 0.98
197 198 7.750947 AAGGACCTATGAAGTTGGTACTATT 57.249 36.000 0.00 0.00 44.89 1.73
198 199 8.849543 TTAAGGACCTATGAAGTTGGTACTAT 57.150 34.615 0.00 0.00 44.89 2.12
199 200 7.343833 CCTTAAGGACCTATGAAGTTGGTACTA 59.656 40.741 17.21 0.00 44.89 1.82
201 202 6.346896 CCTTAAGGACCTATGAAGTTGGTAC 58.653 44.000 17.21 0.00 36.01 3.34
202 203 5.104652 GCCTTAAGGACCTATGAAGTTGGTA 60.105 44.000 26.21 0.00 36.01 3.25
203 204 4.324331 GCCTTAAGGACCTATGAAGTTGGT 60.324 45.833 26.21 0.00 38.73 3.67
204 205 4.200092 GCCTTAAGGACCTATGAAGTTGG 58.800 47.826 26.21 0.00 37.39 3.77
205 206 4.200092 GGCCTTAAGGACCTATGAAGTTG 58.800 47.826 26.21 0.00 37.19 3.16
206 207 3.850173 TGGCCTTAAGGACCTATGAAGTT 59.150 43.478 25.11 0.00 44.80 2.66
207 208 3.200165 GTGGCCTTAAGGACCTATGAAGT 59.800 47.826 25.11 0.00 44.80 3.01
208 209 3.199946 TGTGGCCTTAAGGACCTATGAAG 59.800 47.826 25.11 0.00 44.80 3.02
209 210 3.186283 TGTGGCCTTAAGGACCTATGAA 58.814 45.455 25.11 1.22 44.80 2.57
210 211 2.840511 TGTGGCCTTAAGGACCTATGA 58.159 47.619 25.11 2.06 44.80 2.15
211 212 3.117888 ACATGTGGCCTTAAGGACCTATG 60.118 47.826 27.21 27.21 44.80 2.23
212 213 3.123273 ACATGTGGCCTTAAGGACCTAT 58.877 45.455 25.11 15.47 44.80 2.57
213 214 2.557869 ACATGTGGCCTTAAGGACCTA 58.442 47.619 25.11 13.77 44.80 3.08
214 215 1.372501 ACATGTGGCCTTAAGGACCT 58.627 50.000 25.11 6.63 44.80 3.85
215 216 2.215942 AACATGTGGCCTTAAGGACC 57.784 50.000 25.11 22.99 44.80 4.46
216 217 3.694566 CCTAAACATGTGGCCTTAAGGAC 59.305 47.826 26.21 23.92 45.93 3.85
217 218 3.308832 CCCTAAACATGTGGCCTTAAGGA 60.309 47.826 26.21 4.20 37.39 3.36
218 219 3.023832 CCCTAAACATGTGGCCTTAAGG 58.976 50.000 17.81 17.81 38.53 2.69
219 220 3.697166 ACCCTAAACATGTGGCCTTAAG 58.303 45.455 3.32 0.00 0.00 1.85
220 221 3.818295 ACCCTAAACATGTGGCCTTAA 57.182 42.857 3.32 0.00 0.00 1.85
221 222 3.426615 CAACCCTAAACATGTGGCCTTA 58.573 45.455 3.32 0.00 0.00 2.69
222 223 2.247358 CAACCCTAAACATGTGGCCTT 58.753 47.619 3.32 0.00 0.00 4.35
223 224 1.923356 CAACCCTAAACATGTGGCCT 58.077 50.000 3.32 0.00 0.00 5.19
224 225 0.246360 GCAACCCTAAACATGTGGCC 59.754 55.000 0.00 0.00 0.00 5.36
225 226 0.965439 TGCAACCCTAAACATGTGGC 59.035 50.000 0.00 0.00 0.00 5.01
226 227 1.545582 CCTGCAACCCTAAACATGTGG 59.454 52.381 0.00 0.00 0.00 4.17
227 228 2.513753 TCCTGCAACCCTAAACATGTG 58.486 47.619 0.00 0.00 0.00 3.21
228 229 2.890945 GTTCCTGCAACCCTAAACATGT 59.109 45.455 0.00 0.00 0.00 3.21
229 230 2.890311 TGTTCCTGCAACCCTAAACATG 59.110 45.455 0.00 0.00 33.51 3.21
230 231 3.237268 TGTTCCTGCAACCCTAAACAT 57.763 42.857 0.00 0.00 33.51 2.71
231 232 2.738587 TGTTCCTGCAACCCTAAACA 57.261 45.000 0.00 0.00 33.51 2.83
232 233 4.585879 TCTATGTTCCTGCAACCCTAAAC 58.414 43.478 0.00 0.00 33.51 2.01
233 234 4.919774 TCTATGTTCCTGCAACCCTAAA 57.080 40.909 0.00 0.00 33.51 1.85
234 235 4.385199 CCATCTATGTTCCTGCAACCCTAA 60.385 45.833 0.00 0.00 33.51 2.69
235 236 3.136443 CCATCTATGTTCCTGCAACCCTA 59.864 47.826 0.00 0.00 33.51 3.53
236 237 2.092212 CCATCTATGTTCCTGCAACCCT 60.092 50.000 0.00 0.00 33.51 4.34
237 238 2.301346 CCATCTATGTTCCTGCAACCC 58.699 52.381 0.00 0.00 33.51 4.11
238 239 2.301346 CCCATCTATGTTCCTGCAACC 58.699 52.381 0.00 0.00 33.51 3.77
239 240 2.301346 CCCCATCTATGTTCCTGCAAC 58.699 52.381 0.00 0.00 35.28 4.17
240 241 1.410083 GCCCCATCTATGTTCCTGCAA 60.410 52.381 0.00 0.00 0.00 4.08
241 242 0.183492 GCCCCATCTATGTTCCTGCA 59.817 55.000 0.00 0.00 0.00 4.41
242 243 0.183492 TGCCCCATCTATGTTCCTGC 59.817 55.000 0.00 0.00 0.00 4.85
243 244 2.579873 CTTGCCCCATCTATGTTCCTG 58.420 52.381 0.00 0.00 0.00 3.86
244 245 1.133668 GCTTGCCCCATCTATGTTCCT 60.134 52.381 0.00 0.00 0.00 3.36
245 246 1.133668 AGCTTGCCCCATCTATGTTCC 60.134 52.381 0.00 0.00 0.00 3.62
246 247 2.158696 AGAGCTTGCCCCATCTATGTTC 60.159 50.000 0.00 0.00 0.00 3.18
247 248 1.849039 AGAGCTTGCCCCATCTATGTT 59.151 47.619 0.00 0.00 0.00 2.71
248 249 1.516110 AGAGCTTGCCCCATCTATGT 58.484 50.000 0.00 0.00 0.00 2.29
249 250 2.228059 CAAGAGCTTGCCCCATCTATG 58.772 52.381 0.00 0.00 33.45 2.23
250 251 1.144503 CCAAGAGCTTGCCCCATCTAT 59.855 52.381 4.72 0.00 39.16 1.98
251 252 0.548031 CCAAGAGCTTGCCCCATCTA 59.452 55.000 4.72 0.00 39.16 1.98
252 253 1.305623 CCAAGAGCTTGCCCCATCT 59.694 57.895 4.72 0.00 39.16 2.90
253 254 1.000396 ACCAAGAGCTTGCCCCATC 60.000 57.895 4.72 0.00 39.16 3.51
254 255 1.304713 CACCAAGAGCTTGCCCCAT 60.305 57.895 4.72 0.00 39.16 4.00
255 256 2.115910 CACCAAGAGCTTGCCCCA 59.884 61.111 4.72 0.00 39.16 4.96
256 257 2.677875 CCACCAAGAGCTTGCCCC 60.678 66.667 4.72 0.00 39.16 5.80
257 258 3.376918 GCCACCAAGAGCTTGCCC 61.377 66.667 4.72 0.00 39.16 5.36
258 259 3.741476 CGCCACCAAGAGCTTGCC 61.741 66.667 4.72 0.00 39.16 4.52
259 260 4.410743 GCGCCACCAAGAGCTTGC 62.411 66.667 0.00 0.00 39.16 4.01
260 261 2.670934 AGCGCCACCAAGAGCTTG 60.671 61.111 2.29 3.27 36.41 4.01
261 262 2.359230 GAGCGCCACCAAGAGCTT 60.359 61.111 2.29 0.00 40.39 3.74
262 263 2.888447 AAGAGCGCCACCAAGAGCT 61.888 57.895 2.29 0.00 43.33 4.09
263 264 2.359230 AAGAGCGCCACCAAGAGC 60.359 61.111 2.29 0.00 0.00 4.09
264 265 2.037136 CCAAGAGCGCCACCAAGAG 61.037 63.158 2.29 0.00 0.00 2.85
265 266 2.032528 CCAAGAGCGCCACCAAGA 59.967 61.111 2.29 0.00 0.00 3.02
266 267 1.600636 TTCCAAGAGCGCCACCAAG 60.601 57.895 2.29 0.00 0.00 3.61
267 268 1.896660 GTTCCAAGAGCGCCACCAA 60.897 57.895 2.29 0.00 0.00 3.67
268 269 2.281484 GTTCCAAGAGCGCCACCA 60.281 61.111 2.29 0.00 0.00 4.17
269 270 3.056328 GGTTCCAAGAGCGCCACC 61.056 66.667 2.29 0.00 0.00 4.61
270 271 3.056328 GGGTTCCAAGAGCGCCAC 61.056 66.667 2.29 0.00 0.00 5.01
271 272 3.551496 CTGGGTTCCAAGAGCGCCA 62.551 63.158 2.29 0.00 30.80 5.69
272 273 2.747855 CTGGGTTCCAAGAGCGCC 60.748 66.667 2.29 0.00 30.80 6.53
273 274 2.032681 ACTGGGTTCCAAGAGCGC 59.967 61.111 0.00 0.00 30.80 5.92
274 275 0.951040 GTGACTGGGTTCCAAGAGCG 60.951 60.000 0.00 0.00 30.80 5.03
275 276 0.108585 TGTGACTGGGTTCCAAGAGC 59.891 55.000 0.00 0.00 30.80 4.09
276 277 1.140852 TGTGTGACTGGGTTCCAAGAG 59.859 52.381 0.00 0.00 30.80 2.85
277 278 1.134220 GTGTGTGACTGGGTTCCAAGA 60.134 52.381 0.00 0.00 30.80 3.02
278 279 1.308998 GTGTGTGACTGGGTTCCAAG 58.691 55.000 0.00 0.00 30.80 3.61
279 280 0.621082 TGTGTGTGACTGGGTTCCAA 59.379 50.000 0.00 0.00 30.80 3.53
280 281 0.107410 GTGTGTGTGACTGGGTTCCA 60.107 55.000 0.00 0.00 0.00 3.53
281 282 0.180406 AGTGTGTGTGACTGGGTTCC 59.820 55.000 0.00 0.00 0.00 3.62
282 283 2.159014 TGTAGTGTGTGTGACTGGGTTC 60.159 50.000 0.00 0.00 0.00 3.62
283 284 1.834896 TGTAGTGTGTGTGACTGGGTT 59.165 47.619 0.00 0.00 0.00 4.11
284 285 1.412710 CTGTAGTGTGTGTGACTGGGT 59.587 52.381 0.00 0.00 0.00 4.51
285 286 1.873903 GCTGTAGTGTGTGTGACTGGG 60.874 57.143 0.00 0.00 0.00 4.45
286 287 1.202521 TGCTGTAGTGTGTGTGACTGG 60.203 52.381 0.00 0.00 0.00 4.00
287 288 2.223537 TGCTGTAGTGTGTGTGACTG 57.776 50.000 0.00 0.00 0.00 3.51
288 289 2.979814 TTGCTGTAGTGTGTGTGACT 57.020 45.000 0.00 0.00 0.00 3.41
289 290 3.130633 TGATTGCTGTAGTGTGTGTGAC 58.869 45.455 0.00 0.00 0.00 3.67
290 291 3.392882 CTGATTGCTGTAGTGTGTGTGA 58.607 45.455 0.00 0.00 0.00 3.58
291 292 2.096069 GCTGATTGCTGTAGTGTGTGTG 60.096 50.000 0.00 0.00 38.95 3.82
292 293 2.146342 GCTGATTGCTGTAGTGTGTGT 58.854 47.619 0.00 0.00 38.95 3.72
293 294 2.888513 GCTGATTGCTGTAGTGTGTG 57.111 50.000 0.00 0.00 38.95 3.82
304 305 0.242017 ACGGCAAAGAAGCTGATTGC 59.758 50.000 18.18 18.18 46.60 3.56
305 306 2.712057 AACGGCAAAGAAGCTGATTG 57.288 45.000 1.26 0.00 43.63 2.67
307 308 1.270550 CCAAACGGCAAAGAAGCTGAT 59.729 47.619 1.26 0.00 43.63 2.90
320 321 0.390603 TCGTCTACCATGCCAAACGG 60.391 55.000 8.42 0.00 0.00 4.44
321 322 0.719465 GTCGTCTACCATGCCAAACG 59.281 55.000 0.00 0.00 0.00 3.60
324 325 2.422597 CTTTGTCGTCTACCATGCCAA 58.577 47.619 0.00 0.00 0.00 4.52
327 328 2.380084 TCCTTTGTCGTCTACCATGC 57.620 50.000 0.00 0.00 0.00 4.06
333 334 3.562557 GCTTTTGGTTCCTTTGTCGTCTA 59.437 43.478 0.00 0.00 0.00 2.59
339 340 2.099098 CGTCTGCTTTTGGTTCCTTTGT 59.901 45.455 0.00 0.00 0.00 2.83
346 347 2.159296 GGTTTGACGTCTGCTTTTGGTT 60.159 45.455 17.92 0.00 0.00 3.67
356 357 1.594331 GGCAAAGAGGTTTGACGTCT 58.406 50.000 17.92 0.00 45.22 4.18
395 396 2.259511 CTTTCTTTGCCGGGCAGC 59.740 61.111 22.59 0.00 40.61 5.25
410 411 4.347360 AAGAACCAGTTTACCGTAGCTT 57.653 40.909 0.00 0.00 0.00 3.74
411 412 4.062991 CAAAGAACCAGTTTACCGTAGCT 58.937 43.478 0.00 0.00 0.00 3.32
413 414 3.187842 GGCAAAGAACCAGTTTACCGTAG 59.812 47.826 0.00 0.00 0.00 3.51
414 415 3.140623 GGCAAAGAACCAGTTTACCGTA 58.859 45.455 0.00 0.00 0.00 4.02
416 417 1.069500 CGGCAAAGAACCAGTTTACCG 60.069 52.381 0.00 0.00 37.45 4.02
423 424 2.966309 GCGGACGGCAAAGAACCAG 61.966 63.158 0.00 0.00 42.87 4.00
424 425 2.975799 GCGGACGGCAAAGAACCA 60.976 61.111 0.00 0.00 42.87 3.67
444 445 2.156917 TCTTTGTCGTCCGCTTAGAGA 58.843 47.619 0.00 0.00 0.00 3.10
445 446 2.631418 TCTTTGTCGTCCGCTTAGAG 57.369 50.000 0.00 0.00 0.00 2.43
448 449 2.734606 CACATTCTTTGTCGTCCGCTTA 59.265 45.455 0.00 0.00 36.00 3.09
466 497 3.005684 ACGTCTGTTATTTACCGTCCACA 59.994 43.478 0.00 0.00 0.00 4.17
467 498 3.578688 ACGTCTGTTATTTACCGTCCAC 58.421 45.455 0.00 0.00 0.00 4.02
478 509 5.105064 ACCTAATGTGGCTAACGTCTGTTAT 60.105 40.000 0.00 0.00 39.72 1.89
479 510 4.221262 ACCTAATGTGGCTAACGTCTGTTA 59.779 41.667 0.00 0.00 39.54 2.41
482 513 2.930040 CACCTAATGTGGCTAACGTCTG 59.070 50.000 0.00 0.00 41.52 3.51
493 524 1.369091 GCCGTCAGCCACCTAATGTG 61.369 60.000 0.00 0.00 45.01 3.21
494 525 1.078426 GCCGTCAGCCACCTAATGT 60.078 57.895 0.00 0.00 34.35 2.71
495 526 1.078497 TGCCGTCAGCCACCTAATG 60.078 57.895 0.00 0.00 42.71 1.90
496 527 1.221840 CTGCCGTCAGCCACCTAAT 59.778 57.895 0.00 0.00 42.71 1.73
497 528 2.662596 CTGCCGTCAGCCACCTAA 59.337 61.111 0.00 0.00 42.71 2.69
536 567 1.234615 AAGGATGTGGACGTTTGCCG 61.235 55.000 0.00 0.00 44.03 5.69
544 575 2.069273 CAGACGACAAAGGATGTGGAC 58.931 52.381 0.00 0.00 44.12 4.02
545 576 1.608025 GCAGACGACAAAGGATGTGGA 60.608 52.381 0.00 0.00 44.12 4.02
606 637 3.357079 CGTGGCAGGAACCTGTGC 61.357 66.667 19.97 9.20 45.24 4.57
613 644 1.407656 AAGAGGACACGTGGCAGGAA 61.408 55.000 25.47 0.00 0.00 3.36
615 646 1.071471 AAAGAGGACACGTGGCAGG 59.929 57.895 25.47 5.50 0.00 4.85
626 657 0.033504 GTCACTGACGGCAAAGAGGA 59.966 55.000 0.00 0.00 0.00 3.71
639 670 3.058914 GGGAAATTTGTCGTCTGTCACTG 60.059 47.826 0.00 0.00 0.00 3.66
640 671 3.139077 GGGAAATTTGTCGTCTGTCACT 58.861 45.455 0.00 0.00 0.00 3.41
641 672 3.139077 AGGGAAATTTGTCGTCTGTCAC 58.861 45.455 0.00 0.00 0.00 3.67
644 675 3.243401 GCAAAGGGAAATTTGTCGTCTGT 60.243 43.478 0.00 0.00 41.31 3.41
656 687 0.821711 CCACTGACGGCAAAGGGAAA 60.822 55.000 0.00 0.00 0.00 3.13
657 688 1.228124 CCACTGACGGCAAAGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
658 689 1.701031 TTCCACTGACGGCAAAGGGA 61.701 55.000 8.66 5.04 0.00 4.20
671 702 0.035458 CCTCTTTGCCGTCTTCCACT 59.965 55.000 0.00 0.00 0.00 4.00
676 707 1.968540 GCAGCCTCTTTGCCGTCTT 60.969 57.895 0.00 0.00 35.54 3.01
780 811 8.467598 GGTGTCTTCTTCATCTAGTATTGTGTA 58.532 37.037 0.00 0.00 0.00 2.90
781 812 7.039011 TGGTGTCTTCTTCATCTAGTATTGTGT 60.039 37.037 0.00 0.00 0.00 3.72
782 813 7.323420 TGGTGTCTTCTTCATCTAGTATTGTG 58.677 38.462 0.00 0.00 0.00 3.33
783 814 7.482169 TGGTGTCTTCTTCATCTAGTATTGT 57.518 36.000 0.00 0.00 0.00 2.71
784 815 7.819415 TGTTGGTGTCTTCTTCATCTAGTATTG 59.181 37.037 0.00 0.00 0.00 1.90
785 816 7.907389 TGTTGGTGTCTTCTTCATCTAGTATT 58.093 34.615 0.00 0.00 0.00 1.89
786 817 7.482169 TGTTGGTGTCTTCTTCATCTAGTAT 57.518 36.000 0.00 0.00 0.00 2.12
787 818 6.911250 TGTTGGTGTCTTCTTCATCTAGTA 57.089 37.500 0.00 0.00 0.00 1.82
788 819 5.808366 TGTTGGTGTCTTCTTCATCTAGT 57.192 39.130 0.00 0.00 0.00 2.57
789 820 6.401394 TGATGTTGGTGTCTTCTTCATCTAG 58.599 40.000 0.00 0.00 33.67 2.43
790 821 6.358974 TGATGTTGGTGTCTTCTTCATCTA 57.641 37.500 0.00 0.00 33.67 1.98
791 822 5.233083 TGATGTTGGTGTCTTCTTCATCT 57.767 39.130 0.00 0.00 33.67 2.90
792 823 5.645067 TCATGATGTTGGTGTCTTCTTCATC 59.355 40.000 0.00 0.00 0.00 2.92
793 824 5.563592 TCATGATGTTGGTGTCTTCTTCAT 58.436 37.500 0.00 0.00 0.00 2.57
794 825 4.971939 TCATGATGTTGGTGTCTTCTTCA 58.028 39.130 0.00 0.00 0.00 3.02
795 826 4.142730 GCTCATGATGTTGGTGTCTTCTTC 60.143 45.833 0.00 0.00 0.00 2.87
814 845 7.557719 CCCCTTTATAAAAAGAAGATCTGCTCA 59.442 37.037 2.86 0.00 44.14 4.26
815 846 7.013750 CCCCCTTTATAAAAAGAAGATCTGCTC 59.986 40.741 2.86 0.00 44.14 4.26
817 848 7.043961 CCCCCTTTATAAAAAGAAGATCTGC 57.956 40.000 0.00 0.00 44.14 4.26
876 908 4.510038 ACACTCGTGTAATTTAGACCGT 57.490 40.909 0.00 0.00 42.90 4.83
948 980 9.125026 GGCTGAGAATAGAGGAAATTTTATCAA 57.875 33.333 0.00 0.00 0.00 2.57
952 984 6.650120 ACGGCTGAGAATAGAGGAAATTTTA 58.350 36.000 0.00 0.00 0.00 1.52
1049 1081 2.040947 TGTGGTGATGGTATTTGGAGCA 59.959 45.455 0.00 0.00 0.00 4.26
1088 1120 0.753867 TGTGGACTTTGTAGGTGCGA 59.246 50.000 0.00 0.00 0.00 5.10
1105 1137 2.036862 GGGTGAACCGTAAAGAGTCTGT 59.963 50.000 0.00 0.00 36.71 3.41
1107 1139 2.561858 GAGGGTGAACCGTAAAGAGTCT 59.438 50.000 0.00 0.00 46.96 3.24
1113 1145 2.038033 CTGGAAGAGGGTGAACCGTAAA 59.962 50.000 0.00 0.00 46.96 2.01
1130 1162 4.937620 GCACTATCATCTTGTTTGTCTGGA 59.062 41.667 0.00 0.00 0.00 3.86
1158 1190 6.646240 GGCATACTTTGTGATTGACATGTTTT 59.354 34.615 0.00 0.00 33.40 2.43
1172 1204 2.863132 TACGTTGGGGCATACTTTGT 57.137 45.000 0.00 0.00 0.00 2.83
1209 1241 0.107214 TTTCATCCCACTCCCGATGC 60.107 55.000 0.00 0.00 36.60 3.91
1258 1290 1.410083 GCCATAGCAATCAACCTCCCA 60.410 52.381 0.00 0.00 39.53 4.37
1259 1291 1.133668 AGCCATAGCAATCAACCTCCC 60.134 52.381 0.00 0.00 43.56 4.30
1326 1358 1.310216 TGGCGTCGAAGGATTCTCGA 61.310 55.000 0.00 0.00 44.75 4.04
1360 1393 2.623416 CTCCATACGCTGTCATCTACCA 59.377 50.000 0.00 0.00 0.00 3.25
1399 1432 3.489355 TGGCATTCGATATTGGCAATCT 58.511 40.909 17.41 6.94 44.30 2.40
1551 1585 8.659527 TGTTATGATGTCCATAATATCCACTGT 58.340 33.333 0.00 0.00 46.12 3.55
1616 1651 2.289569 TGATTTTTGCCTCATGGGTTGC 60.290 45.455 0.00 0.00 37.43 4.17
1636 1671 6.293626 CGACATATGGAAAGATAGGCCTTTTG 60.294 42.308 12.58 0.00 36.58 2.44
1707 1743 2.902705 TATGTGTTGGATACTCGGCC 57.097 50.000 0.00 0.00 37.61 6.13
1709 1745 8.601845 TGAAATTATATGTGTTGGATACTCGG 57.398 34.615 0.00 0.00 37.61 4.63
1747 1783 4.165950 TGCTATGTATGGTTGGATGGAACT 59.834 41.667 0.00 0.00 0.00 3.01
1782 1818 6.003326 TGTAATATGTATGGTTGGATGCCTG 58.997 40.000 0.00 0.00 0.00 4.85
1784 1820 6.892658 TTGTAATATGTATGGTTGGATGCC 57.107 37.500 0.00 0.00 0.00 4.40
1834 1870 9.146984 CTGTTTCTTTTGTACCGATGAACTATA 57.853 33.333 0.00 0.00 0.00 1.31
1835 1871 7.876068 TCTGTTTCTTTTGTACCGATGAACTAT 59.124 33.333 0.00 0.00 0.00 2.12
1836 1872 7.211573 TCTGTTTCTTTTGTACCGATGAACTA 58.788 34.615 0.00 0.00 0.00 2.24
1837 1873 6.053005 TCTGTTTCTTTTGTACCGATGAACT 58.947 36.000 0.00 0.00 0.00 3.01
1844 1880 6.428771 TCCCTTTATCTGTTTCTTTTGTACCG 59.571 38.462 0.00 0.00 0.00 4.02
1862 1898 7.265599 TGATGGAGTTCTTGTTATCCCTTTA 57.734 36.000 0.00 0.00 0.00 1.85
1868 1904 6.441093 TGCATTGATGGAGTTCTTGTTATC 57.559 37.500 0.00 0.00 0.00 1.75
1873 1909 3.192844 AGCTTGCATTGATGGAGTTCTTG 59.807 43.478 0.00 0.00 0.00 3.02
1877 1913 2.494870 GGAAGCTTGCATTGATGGAGTT 59.505 45.455 13.73 0.00 0.00 3.01
1898 1934 2.157474 TGCAGATTTCATTCACGTCACG 59.843 45.455 0.00 0.00 0.00 4.35
1903 1939 4.327898 CCCATTTTGCAGATTTCATTCACG 59.672 41.667 0.00 0.00 0.00 4.35
1993 2029 9.061435 TCTTCTTCATTTTCTTCTTCTTCTTCC 57.939 33.333 0.00 0.00 0.00 3.46
1996 2032 9.844257 TCTTCTTCTTCATTTTCTTCTTCTTCT 57.156 29.630 0.00 0.00 0.00 2.85
1999 2035 9.625747 ACTTCTTCTTCTTCATTTTCTTCTTCT 57.374 29.630 0.00 0.00 0.00 2.85
2055 2094 9.686683 ACCTAAGTTAGCTCATAAATGTCATTT 57.313 29.630 14.98 14.98 36.29 2.32
2075 2114 7.536281 GGCTCGTAAATGTTGTTTTTACCTAAG 59.464 37.037 0.00 0.00 36.59 2.18
2082 2121 5.656480 AGTTGGCTCGTAAATGTTGTTTTT 58.344 33.333 0.00 0.00 0.00 1.94
2087 2126 4.154195 AGCTAAGTTGGCTCGTAAATGTTG 59.846 41.667 8.09 0.00 34.70 3.33
2096 2137 3.938963 TCCATTTTAGCTAAGTTGGCTCG 59.061 43.478 17.87 2.72 40.74 5.03
2114 2155 6.547510 GCTAGGTTAGTTCCAAAATGATCCAT 59.452 38.462 0.00 0.00 0.00 3.41
2125 2166 6.630203 TCCATTTTAGCTAGGTTAGTTCCA 57.370 37.500 0.00 0.00 0.00 3.53
2126 2167 7.280356 TGATCCATTTTAGCTAGGTTAGTTCC 58.720 38.462 0.00 0.00 0.00 3.62
2127 2168 8.910351 ATGATCCATTTTAGCTAGGTTAGTTC 57.090 34.615 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.