Multiple sequence alignment - TraesCS2B01G509500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G509500 chr2B 100.000 3575 0 0 1 3575 705529047 705532621 0.000000e+00 6602.0
1 TraesCS2B01G509500 chr2B 92.506 1588 99 9 947 2525 705328236 705326660 0.000000e+00 2255.0
2 TraesCS2B01G509500 chr2B 94.444 288 14 2 2614 2900 63860999 63860713 3.280000e-120 442.0
3 TraesCS2B01G509500 chr2D 94.771 1874 73 7 749 2610 584896901 584898761 0.000000e+00 2894.0
4 TraesCS2B01G509500 chr2D 87.215 657 76 5 47 697 596204901 596204247 0.000000e+00 741.0
5 TraesCS2B01G509500 chr2D 93.235 473 25 3 3108 3575 584898851 584899321 0.000000e+00 689.0
6 TraesCS2B01G509500 chr2D 83.396 265 32 9 779 1033 584896178 584896440 5.970000e-58 235.0
7 TraesCS2B01G509500 chr2A 90.708 1808 124 21 779 2559 719204334 719206124 0.000000e+00 2368.0
8 TraesCS2B01G509500 chr5A 82.536 1443 239 10 1056 2493 299254551 299253117 0.000000e+00 1256.0
9 TraesCS2B01G509500 chr5A 86.364 66 5 4 2118 2181 457566485 457566422 6.400000e-08 69.4
10 TraesCS2B01G509500 chr5A 76.712 146 21 4 2898 3042 687153711 687153844 6.400000e-08 69.4
11 TraesCS2B01G509500 chr5D 82.202 1444 242 12 1056 2493 224761710 224760276 0.000000e+00 1229.0
12 TraesCS2B01G509500 chr5B 82.201 1236 209 7 1056 2287 246951479 246952707 0.000000e+00 1053.0
13 TraesCS2B01G509500 chr5B 84.686 764 103 11 1 751 669509338 669510100 0.000000e+00 750.0
14 TraesCS2B01G509500 chr5B 86.364 66 5 4 2118 2181 420185901 420185964 6.400000e-08 69.4
15 TraesCS2B01G509500 chr7D 86.243 756 75 14 6 751 90255292 90254556 0.000000e+00 793.0
16 TraesCS2B01G509500 chr7D 86.179 738 82 8 1 733 553822326 553823048 0.000000e+00 780.0
17 TraesCS2B01G509500 chr7D 77.465 142 22 7 2898 3029 463699756 463699897 3.830000e-10 76.8
18 TraesCS2B01G509500 chr7D 92.308 52 2 2 2150 2200 123157922 123157972 4.950000e-09 73.1
19 TraesCS2B01G509500 chr7D 89.286 56 5 1 3187 3242 598729159 598729213 6.400000e-08 69.4
20 TraesCS2B01G509500 chr4B 85.714 763 93 13 1 751 362137151 362137909 0.000000e+00 791.0
21 TraesCS2B01G509500 chr4B 93.772 289 18 0 2614 2902 79528888 79528600 5.480000e-118 435.0
22 TraesCS2B01G509500 chr4A 85.492 772 72 13 1 751 727414564 727415316 0.000000e+00 769.0
23 TraesCS2B01G509500 chr4A 95.053 283 14 0 2617 2899 619765478 619765760 2.530000e-121 446.0
24 TraesCS2B01G509500 chr1B 85.464 743 95 10 1 734 512773667 512772929 0.000000e+00 761.0
25 TraesCS2B01G509500 chr1B 93.728 287 18 0 2615 2901 495803962 495804248 7.090000e-117 431.0
26 TraesCS2B01G509500 chr6D 87.846 650 67 9 1 646 132055544 132054903 0.000000e+00 752.0
27 TraesCS2B01G509500 chr3B 84.516 775 99 17 1 758 30496358 30495588 0.000000e+00 747.0
28 TraesCS2B01G509500 chr3B 93.151 292 18 2 2608 2899 58625933 58625644 9.170000e-116 427.0
29 TraesCS2B01G509500 chr3B 77.372 137 27 4 1400 1534 123033691 123033825 1.060000e-10 78.7
30 TraesCS2B01G509500 chr7B 93.750 288 18 0 2614 2901 31801368 31801081 1.970000e-117 433.0
31 TraesCS2B01G509500 chr7B 93.772 289 16 2 2615 2902 619087924 619088211 1.970000e-117 433.0
32 TraesCS2B01G509500 chr7B 93.493 292 16 3 2611 2901 465585720 465585431 7.090000e-117 431.0
33 TraesCS2B01G509500 chr7B 77.037 135 25 6 2898 3029 689902980 689903111 4.950000e-09 73.1
34 TraesCS2B01G509500 chr7B 85.938 64 9 0 2898 2961 212074002 212074065 6.400000e-08 69.4
35 TraesCS2B01G509500 chr7B 84.848 66 10 0 2898 2963 488373910 488373845 2.300000e-07 67.6
36 TraesCS2B01G509500 chr7A 92.282 298 22 1 2606 2902 24860985 24861282 4.270000e-114 422.0
37 TraesCS2B01G509500 chr3D 84.375 96 12 3 1445 1539 75947208 75947301 1.370000e-14 91.6
38 TraesCS2B01G509500 chr3D 84.524 84 11 2 1447 1529 75962516 75962598 8.230000e-12 82.4
39 TraesCS2B01G509500 chr3D 77.778 153 19 8 2898 3038 140625395 140625246 2.960000e-11 80.5
40 TraesCS2B01G509500 chr3A 76.667 150 31 4 1400 1547 90364456 90364603 2.960000e-11 80.5
41 TraesCS2B01G509500 chr1D 92.308 52 2 2 2150 2200 355669490 355669540 4.950000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G509500 chr2B 705529047 705532621 3574 False 6602.000000 6602 100.000000 1 3575 1 chr2B.!!$F1 3574
1 TraesCS2B01G509500 chr2B 705326660 705328236 1576 True 2255.000000 2255 92.506000 947 2525 1 chr2B.!!$R2 1578
2 TraesCS2B01G509500 chr2D 584896178 584899321 3143 False 1272.666667 2894 90.467333 749 3575 3 chr2D.!!$F1 2826
3 TraesCS2B01G509500 chr2D 596204247 596204901 654 True 741.000000 741 87.215000 47 697 1 chr2D.!!$R1 650
4 TraesCS2B01G509500 chr2A 719204334 719206124 1790 False 2368.000000 2368 90.708000 779 2559 1 chr2A.!!$F1 1780
5 TraesCS2B01G509500 chr5A 299253117 299254551 1434 True 1256.000000 1256 82.536000 1056 2493 1 chr5A.!!$R1 1437
6 TraesCS2B01G509500 chr5D 224760276 224761710 1434 True 1229.000000 1229 82.202000 1056 2493 1 chr5D.!!$R1 1437
7 TraesCS2B01G509500 chr5B 246951479 246952707 1228 False 1053.000000 1053 82.201000 1056 2287 1 chr5B.!!$F1 1231
8 TraesCS2B01G509500 chr5B 669509338 669510100 762 False 750.000000 750 84.686000 1 751 1 chr5B.!!$F3 750
9 TraesCS2B01G509500 chr7D 90254556 90255292 736 True 793.000000 793 86.243000 6 751 1 chr7D.!!$R1 745
10 TraesCS2B01G509500 chr7D 553822326 553823048 722 False 780.000000 780 86.179000 1 733 1 chr7D.!!$F3 732
11 TraesCS2B01G509500 chr4B 362137151 362137909 758 False 791.000000 791 85.714000 1 751 1 chr4B.!!$F1 750
12 TraesCS2B01G509500 chr4A 727414564 727415316 752 False 769.000000 769 85.492000 1 751 1 chr4A.!!$F2 750
13 TraesCS2B01G509500 chr1B 512772929 512773667 738 True 761.000000 761 85.464000 1 734 1 chr1B.!!$R1 733
14 TraesCS2B01G509500 chr6D 132054903 132055544 641 True 752.000000 752 87.846000 1 646 1 chr6D.!!$R1 645
15 TraesCS2B01G509500 chr3B 30495588 30496358 770 True 747.000000 747 84.516000 1 758 1 chr3B.!!$R1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 198 0.250381 GGCCTCCTCGTCTATCTCGA 60.250 60.0 0.00 0.0 35.96 4.04 F
541 559 0.824759 AAAGCGGTAGAAGGAGCGAT 59.175 50.0 0.00 0.0 42.83 4.58 F
1241 2040 0.438830 GACGTCGACAACAAGGATGC 59.561 55.0 17.16 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1219 2018 0.040692 TCCTTGTTGTCGACGTCTCG 60.041 55.0 14.70 1.54 41.65 4.04 R
2525 3334 0.534427 ATCCACTCCAGCATGCATCG 60.534 55.0 21.98 7.66 31.97 3.84 R
2615 3432 0.032615 TGTGAACCAAACAGGGCCTT 60.033 50.0 1.32 0.00 43.89 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.223923 CCAAGACGAAGCATCTCCTAGG 60.224 54.545 0.82 0.82 0.00 3.02
24 25 1.063567 AGACGAAGCATCTCCTAGGGT 60.064 52.381 9.46 0.00 0.00 4.34
45 46 3.124636 GTGATGTTGAATTTAGCGACCGT 59.875 43.478 0.00 0.00 0.00 4.83
51 52 2.232941 TGAATTTAGCGACCGTCTTCCT 59.767 45.455 0.00 0.00 0.00 3.36
96 98 1.225983 CTCGCTCTCCCTCCTCTCA 59.774 63.158 0.00 0.00 0.00 3.27
134 136 1.869767 CTCAGCGAAGAACTGTTGCTT 59.130 47.619 0.00 1.43 36.50 3.91
189 191 3.474570 GCCATGGCCTCCTCGTCT 61.475 66.667 27.24 0.00 34.56 4.18
196 198 0.250381 GGCCTCCTCGTCTATCTCGA 60.250 60.000 0.00 0.00 35.96 4.04
533 551 1.743958 CGAGGAGAGAAAGCGGTAGAA 59.256 52.381 0.00 0.00 0.00 2.10
541 559 0.824759 AAAGCGGTAGAAGGAGCGAT 59.175 50.000 0.00 0.00 42.83 4.58
553 571 4.263209 AGCGATGAGAGAGCGGCG 62.263 66.667 0.51 0.51 32.74 6.46
578 596 1.334869 GCGCTGCAAGTTTATAGGCAT 59.665 47.619 0.00 0.00 35.45 4.40
583 601 1.946768 GCAAGTTTATAGGCATGCCGA 59.053 47.619 30.50 26.61 41.95 5.54
646 668 4.829518 GCGCGCAATCGTTTCCCC 62.830 66.667 29.10 0.00 38.14 4.81
705 729 2.770589 CCCCCGCACGCTAAAATGG 61.771 63.158 0.00 0.00 0.00 3.16
715 739 4.743493 CACGCTAAAATGGCATTTTACCT 58.257 39.130 31.41 17.61 42.13 3.08
725 749 2.795389 ATTTTACCTCGCGCGCGTC 61.795 57.895 46.54 21.85 40.74 5.19
754 784 2.675317 GCGTTGGAGATGCTCTTAGTGT 60.675 50.000 0.00 0.00 37.30 3.55
757 787 2.111384 TGGAGATGCTCTTAGTGTCCC 58.889 52.381 0.00 0.00 0.00 4.46
758 788 2.292521 TGGAGATGCTCTTAGTGTCCCT 60.293 50.000 0.00 0.00 0.00 4.20
759 789 2.364002 GGAGATGCTCTTAGTGTCCCTC 59.636 54.545 0.00 0.00 0.00 4.30
760 790 3.295973 GAGATGCTCTTAGTGTCCCTCT 58.704 50.000 0.00 0.00 0.00 3.69
761 791 3.704061 GAGATGCTCTTAGTGTCCCTCTT 59.296 47.826 0.00 0.00 0.00 2.85
762 792 4.100373 AGATGCTCTTAGTGTCCCTCTTT 58.900 43.478 0.00 0.00 0.00 2.52
763 793 4.534103 AGATGCTCTTAGTGTCCCTCTTTT 59.466 41.667 0.00 0.00 0.00 2.27
764 794 4.273148 TGCTCTTAGTGTCCCTCTTTTC 57.727 45.455 0.00 0.00 0.00 2.29
765 795 3.646162 TGCTCTTAGTGTCCCTCTTTTCA 59.354 43.478 0.00 0.00 0.00 2.69
766 796 4.287067 TGCTCTTAGTGTCCCTCTTTTCAT 59.713 41.667 0.00 0.00 0.00 2.57
767 797 4.873259 GCTCTTAGTGTCCCTCTTTTCATC 59.127 45.833 0.00 0.00 0.00 2.92
768 798 5.422214 TCTTAGTGTCCCTCTTTTCATCC 57.578 43.478 0.00 0.00 0.00 3.51
769 799 2.770164 AGTGTCCCTCTTTTCATCCG 57.230 50.000 0.00 0.00 0.00 4.18
770 800 1.978580 AGTGTCCCTCTTTTCATCCGT 59.021 47.619 0.00 0.00 0.00 4.69
771 801 3.170717 AGTGTCCCTCTTTTCATCCGTA 58.829 45.455 0.00 0.00 0.00 4.02
772 802 3.775316 AGTGTCCCTCTTTTCATCCGTAT 59.225 43.478 0.00 0.00 0.00 3.06
773 803 4.960469 AGTGTCCCTCTTTTCATCCGTATA 59.040 41.667 0.00 0.00 0.00 1.47
774 804 5.602978 AGTGTCCCTCTTTTCATCCGTATAT 59.397 40.000 0.00 0.00 0.00 0.86
775 805 6.099845 AGTGTCCCTCTTTTCATCCGTATATT 59.900 38.462 0.00 0.00 0.00 1.28
776 806 6.202954 GTGTCCCTCTTTTCATCCGTATATTG 59.797 42.308 0.00 0.00 0.00 1.90
777 807 6.126883 TGTCCCTCTTTTCATCCGTATATTGT 60.127 38.462 0.00 0.00 0.00 2.71
781 811 7.148407 CCCTCTTTTCATCCGTATATTGTATGC 60.148 40.741 0.00 0.00 0.00 3.14
785 815 5.128992 TCATCCGTATATTGTATGCACGT 57.871 39.130 0.00 0.00 0.00 4.49
792 822 5.115622 CGTATATTGTATGCACGTCTGACTG 59.884 44.000 6.21 4.78 0.00 3.51
839 1622 1.404391 CCGACGTCACCTGTAGCTAAT 59.596 52.381 17.16 0.00 0.00 1.73
851 1634 3.278574 TGTAGCTAATCCATGTGGTTGC 58.721 45.455 0.00 0.57 36.34 4.17
858 1641 1.373748 CCATGTGGTTGCAAGCTGC 60.374 57.895 27.31 19.96 45.29 5.25
914 1697 2.897271 TGGCCAAGATGGTGTACAAT 57.103 45.000 0.61 0.00 40.46 2.71
915 1698 4.206375 CATGGCCAAGATGGTGTACAATA 58.794 43.478 10.96 0.00 40.46 1.90
916 1699 3.616219 TGGCCAAGATGGTGTACAATAC 58.384 45.455 0.61 0.00 40.46 1.89
917 1700 2.612212 GGCCAAGATGGTGTACAATACG 59.388 50.000 0.00 0.00 40.46 3.06
918 1701 2.612212 GCCAAGATGGTGTACAATACGG 59.388 50.000 0.00 0.00 40.46 4.02
919 1702 3.680475 GCCAAGATGGTGTACAATACGGA 60.680 47.826 0.00 0.00 40.46 4.69
920 1703 4.119862 CCAAGATGGTGTACAATACGGAG 58.880 47.826 0.00 0.00 31.35 4.63
1219 2018 1.032114 CCGCATGTTCCCTTCTTCCC 61.032 60.000 0.00 0.00 0.00 3.97
1241 2040 0.438830 GACGTCGACAACAAGGATGC 59.561 55.000 17.16 0.00 0.00 3.91
1242 2041 0.949105 ACGTCGACAACAAGGATGCC 60.949 55.000 17.16 0.00 0.00 4.40
1245 2044 2.877691 GACAACAAGGATGCCGCC 59.122 61.111 0.00 0.00 0.00 6.13
1246 2045 1.971167 GACAACAAGGATGCCGCCA 60.971 57.895 0.00 0.00 0.00 5.69
1247 2046 1.926511 GACAACAAGGATGCCGCCAG 61.927 60.000 0.00 0.00 0.00 4.85
1632 2431 2.048503 CGCGACTTCCCGTCCTTT 60.049 61.111 0.00 0.00 39.56 3.11
1650 2449 3.667282 CTCGTCGACACCACGGGT 61.667 66.667 17.16 0.00 37.85 5.28
1684 2483 2.736995 TCTTCAACGAAGCGGCCG 60.737 61.111 24.05 24.05 39.29 6.13
1853 2658 2.743752 CGCGCATCCACCTGTTCAG 61.744 63.158 8.75 0.00 0.00 3.02
1979 2784 1.814634 GCAGATGGAGGAGATTGCCAG 60.815 57.143 0.00 0.00 34.74 4.85
2061 2866 3.474570 GTGAGCCGGAGCCTGGAT 61.475 66.667 5.05 0.00 41.25 3.41
2266 3071 1.292242 TGATAGAGGAGGAGTGGGCTT 59.708 52.381 0.00 0.00 0.00 4.35
2283 3088 4.689549 TCCGGCGTCAGAGGGGAA 62.690 66.667 6.01 0.00 0.00 3.97
2525 3334 7.148239 ACCAAATCTGTCCAAATCGATTAAGTC 60.148 37.037 11.83 4.55 0.00 3.01
2591 3408 9.064706 TCGGAGTTAAACAACATTTAATAACCA 57.935 29.630 0.00 0.00 0.00 3.67
2610 3427 5.184892 ACCAGGATTGCTAAATCTCAGTT 57.815 39.130 0.00 0.00 41.74 3.16
2612 3429 4.946157 CCAGGATTGCTAAATCTCAGTTGT 59.054 41.667 0.00 0.00 41.74 3.32
2615 3432 7.044181 CAGGATTGCTAAATCTCAGTTGTCTA 58.956 38.462 0.00 0.00 41.74 2.59
2616 3433 7.550551 CAGGATTGCTAAATCTCAGTTGTCTAA 59.449 37.037 0.00 0.00 41.74 2.10
2617 3434 7.768120 AGGATTGCTAAATCTCAGTTGTCTAAG 59.232 37.037 0.00 0.00 41.74 2.18
2618 3435 7.011857 GGATTGCTAAATCTCAGTTGTCTAAGG 59.988 40.741 0.00 0.00 41.74 2.69
2619 3436 5.178797 TGCTAAATCTCAGTTGTCTAAGGC 58.821 41.667 0.00 0.00 0.00 4.35
2620 3437 4.572795 GCTAAATCTCAGTTGTCTAAGGCC 59.427 45.833 0.00 0.00 0.00 5.19
2621 3438 3.636153 AATCTCAGTTGTCTAAGGCCC 57.364 47.619 0.00 0.00 0.00 5.80
2622 3439 2.327325 TCTCAGTTGTCTAAGGCCCT 57.673 50.000 0.00 0.00 0.00 5.19
2623 3440 1.902508 TCTCAGTTGTCTAAGGCCCTG 59.097 52.381 0.00 0.00 0.00 4.45
2624 3441 1.625818 CTCAGTTGTCTAAGGCCCTGT 59.374 52.381 0.00 0.00 0.00 4.00
2625 3442 2.039084 CTCAGTTGTCTAAGGCCCTGTT 59.961 50.000 0.00 0.00 0.00 3.16
2626 3443 2.441750 TCAGTTGTCTAAGGCCCTGTTT 59.558 45.455 0.00 0.00 0.00 2.83
2627 3444 2.554032 CAGTTGTCTAAGGCCCTGTTTG 59.446 50.000 0.00 0.00 0.00 2.93
2628 3445 1.886542 GTTGTCTAAGGCCCTGTTTGG 59.113 52.381 0.00 0.00 0.00 3.28
2629 3446 1.145571 TGTCTAAGGCCCTGTTTGGT 58.854 50.000 0.00 0.00 0.00 3.67
2630 3447 1.497286 TGTCTAAGGCCCTGTTTGGTT 59.503 47.619 0.00 0.00 0.00 3.67
2631 3448 2.160205 GTCTAAGGCCCTGTTTGGTTC 58.840 52.381 0.00 0.00 0.00 3.62
2632 3449 1.777878 TCTAAGGCCCTGTTTGGTTCA 59.222 47.619 0.00 0.00 0.00 3.18
2633 3450 1.886542 CTAAGGCCCTGTTTGGTTCAC 59.113 52.381 0.00 0.00 0.00 3.18
2634 3451 0.032615 AAGGCCCTGTTTGGTTCACA 60.033 50.000 0.00 0.00 0.00 3.58
2635 3452 0.032615 AGGCCCTGTTTGGTTCACAA 60.033 50.000 0.00 0.00 37.28 3.33
2636 3453 0.389025 GGCCCTGTTTGGTTCACAAG 59.611 55.000 0.00 0.00 40.82 3.16
2637 3454 1.111277 GCCCTGTTTGGTTCACAAGT 58.889 50.000 0.00 0.00 40.82 3.16
2638 3455 1.067060 GCCCTGTTTGGTTCACAAGTC 59.933 52.381 0.00 0.00 40.82 3.01
2639 3456 1.681264 CCCTGTTTGGTTCACAAGTCC 59.319 52.381 0.00 0.00 40.82 3.85
2640 3457 2.654863 CCTGTTTGGTTCACAAGTCCT 58.345 47.619 0.00 0.00 40.82 3.85
2641 3458 3.434453 CCCTGTTTGGTTCACAAGTCCTA 60.434 47.826 0.00 0.00 40.82 2.94
2642 3459 3.564225 CCTGTTTGGTTCACAAGTCCTAC 59.436 47.826 0.00 0.00 40.82 3.18
2643 3460 4.196193 CTGTTTGGTTCACAAGTCCTACA 58.804 43.478 0.00 0.00 40.82 2.74
2644 3461 4.590918 TGTTTGGTTCACAAGTCCTACAA 58.409 39.130 0.00 0.00 40.82 2.41
2645 3462 4.396790 TGTTTGGTTCACAAGTCCTACAAC 59.603 41.667 0.00 0.00 40.82 3.32
2646 3463 4.497291 TTGGTTCACAAGTCCTACAACT 57.503 40.909 0.00 0.00 33.18 3.16
2647 3464 4.497291 TGGTTCACAAGTCCTACAACTT 57.503 40.909 0.00 0.00 40.08 2.66
2648 3465 4.850680 TGGTTCACAAGTCCTACAACTTT 58.149 39.130 0.00 0.00 37.38 2.66
2649 3466 5.258051 TGGTTCACAAGTCCTACAACTTTT 58.742 37.500 0.00 0.00 37.38 2.27
2650 3467 5.712917 TGGTTCACAAGTCCTACAACTTTTT 59.287 36.000 0.00 0.00 37.38 1.94
2674 3491 9.643735 TTTTTAGTTCCAACTTATAAGTCCCAA 57.356 29.630 18.28 8.44 38.57 4.12
2675 3492 8.857694 TTTAGTTCCAACTTATAAGTCCCAAG 57.142 34.615 18.28 6.34 38.57 3.61
2676 3493 6.449830 AGTTCCAACTTATAAGTCCCAAGT 57.550 37.500 18.28 10.64 38.57 3.16
2677 3494 6.473758 AGTTCCAACTTATAAGTCCCAAGTC 58.526 40.000 18.28 6.78 38.57 3.01
2678 3495 5.431179 TCCAACTTATAAGTCCCAAGTCC 57.569 43.478 18.28 0.00 38.57 3.85
2679 3496 5.098663 TCCAACTTATAAGTCCCAAGTCCT 58.901 41.667 18.28 0.00 38.57 3.85
2680 3497 5.189145 TCCAACTTATAAGTCCCAAGTCCTC 59.811 44.000 18.28 0.00 38.57 3.71
2681 3498 5.045869 CCAACTTATAAGTCCCAAGTCCTCA 60.046 44.000 18.28 0.00 38.57 3.86
2682 3499 6.472887 CAACTTATAAGTCCCAAGTCCTCAA 58.527 40.000 18.28 0.00 38.57 3.02
2683 3500 6.697641 ACTTATAAGTCCCAAGTCCTCAAA 57.302 37.500 12.50 0.00 32.86 2.69
2684 3501 7.086685 ACTTATAAGTCCCAAGTCCTCAAAA 57.913 36.000 12.50 0.00 32.86 2.44
2685 3502 7.523415 ACTTATAAGTCCCAAGTCCTCAAAAA 58.477 34.615 12.50 0.00 32.86 1.94
2686 3503 7.665974 ACTTATAAGTCCCAAGTCCTCAAAAAG 59.334 37.037 12.50 0.00 32.86 2.27
2687 3504 3.953542 AGTCCCAAGTCCTCAAAAAGT 57.046 42.857 0.00 0.00 0.00 2.66
2688 3505 3.821748 AGTCCCAAGTCCTCAAAAAGTC 58.178 45.455 0.00 0.00 0.00 3.01
2689 3506 2.885266 GTCCCAAGTCCTCAAAAAGTCC 59.115 50.000 0.00 0.00 0.00 3.85
2690 3507 2.158519 TCCCAAGTCCTCAAAAAGTCCC 60.159 50.000 0.00 0.00 0.00 4.46
2691 3508 2.158460 CCCAAGTCCTCAAAAAGTCCCT 60.158 50.000 0.00 0.00 0.00 4.20
2692 3509 3.073946 CCCAAGTCCTCAAAAAGTCCCTA 59.926 47.826 0.00 0.00 0.00 3.53
2693 3510 4.072839 CCAAGTCCTCAAAAAGTCCCTAC 58.927 47.826 0.00 0.00 0.00 3.18
2694 3511 4.445735 CCAAGTCCTCAAAAAGTCCCTACA 60.446 45.833 0.00 0.00 0.00 2.74
2695 3512 5.316987 CAAGTCCTCAAAAAGTCCCTACAT 58.683 41.667 0.00 0.00 0.00 2.29
2696 3513 4.911390 AGTCCTCAAAAAGTCCCTACATG 58.089 43.478 0.00 0.00 0.00 3.21
2697 3514 4.351111 AGTCCTCAAAAAGTCCCTACATGT 59.649 41.667 2.69 2.69 0.00 3.21
2698 3515 5.070685 GTCCTCAAAAAGTCCCTACATGTT 58.929 41.667 2.30 0.00 0.00 2.71
2699 3516 5.535030 GTCCTCAAAAAGTCCCTACATGTTT 59.465 40.000 2.30 0.00 0.00 2.83
2700 3517 5.534654 TCCTCAAAAAGTCCCTACATGTTTG 59.465 40.000 2.30 0.00 0.00 2.93
2701 3518 5.278957 CCTCAAAAAGTCCCTACATGTTTGG 60.279 44.000 2.30 7.15 0.00 3.28
2702 3519 5.205056 TCAAAAAGTCCCTACATGTTTGGT 58.795 37.500 2.30 0.00 0.00 3.67
2703 3520 5.659079 TCAAAAAGTCCCTACATGTTTGGTT 59.341 36.000 2.30 0.00 0.00 3.67
2704 3521 5.784578 AAAAGTCCCTACATGTTTGGTTC 57.215 39.130 2.30 3.85 0.00 3.62
2705 3522 3.434940 AGTCCCTACATGTTTGGTTCC 57.565 47.619 2.30 0.00 0.00 3.62
2706 3523 2.986728 AGTCCCTACATGTTTGGTTCCT 59.013 45.455 2.30 1.09 0.00 3.36
2707 3524 3.081804 GTCCCTACATGTTTGGTTCCTG 58.918 50.000 2.30 0.00 0.00 3.86
2708 3525 2.041081 TCCCTACATGTTTGGTTCCTGG 59.959 50.000 2.30 0.00 0.00 4.45
2709 3526 2.446435 CCTACATGTTTGGTTCCTGGG 58.554 52.381 2.30 0.00 0.00 4.45
2710 3527 2.041081 CCTACATGTTTGGTTCCTGGGA 59.959 50.000 2.30 0.00 0.00 4.37
2711 3528 1.995376 ACATGTTTGGTTCCTGGGAC 58.005 50.000 0.00 0.00 0.00 4.46
2712 3529 1.499007 ACATGTTTGGTTCCTGGGACT 59.501 47.619 4.84 0.00 0.00 3.85
2713 3530 2.091333 ACATGTTTGGTTCCTGGGACTT 60.091 45.455 4.84 0.00 0.00 3.01
2714 3531 3.139397 ACATGTTTGGTTCCTGGGACTTA 59.861 43.478 4.84 0.00 0.00 2.24
2715 3532 4.202673 ACATGTTTGGTTCCTGGGACTTAT 60.203 41.667 4.84 0.00 0.00 1.73
2716 3533 5.014755 ACATGTTTGGTTCCTGGGACTTATA 59.985 40.000 4.84 0.00 0.00 0.98
2717 3534 5.586155 TGTTTGGTTCCTGGGACTTATAA 57.414 39.130 4.84 0.00 0.00 0.98
2718 3535 5.566469 TGTTTGGTTCCTGGGACTTATAAG 58.434 41.667 11.05 11.05 0.00 1.73
2719 3536 5.073965 TGTTTGGTTCCTGGGACTTATAAGT 59.926 40.000 18.05 18.05 43.16 2.24
2742 3559 9.448587 AAGTCCCTATAAGACCATATTACAACT 57.551 33.333 0.09 0.00 34.67 3.16
2752 3569 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
2761 3578 7.852550 ACAACTATAAGTCCCTATAAGTCCC 57.147 40.000 0.00 0.00 0.00 4.46
2762 3579 7.602868 ACAACTATAAGTCCCTATAAGTCCCT 58.397 38.462 0.00 0.00 0.00 4.20
2763 3580 8.072480 ACAACTATAAGTCCCTATAAGTCCCTT 58.928 37.037 0.00 0.00 0.00 3.95
2764 3581 8.586744 CAACTATAAGTCCCTATAAGTCCCTTC 58.413 40.741 0.00 0.00 0.00 3.46
2765 3582 8.071235 ACTATAAGTCCCTATAAGTCCCTTCT 57.929 38.462 0.00 0.00 0.00 2.85
2766 3583 8.521301 ACTATAAGTCCCTATAAGTCCCTTCTT 58.479 37.037 0.00 0.00 0.00 2.52
2767 3584 5.959583 AAGTCCCTATAAGTCCCTTCTTG 57.040 43.478 0.00 0.00 0.00 3.02
2768 3585 5.222278 AGTCCCTATAAGTCCCTTCTTGA 57.778 43.478 0.00 0.00 0.00 3.02
2769 3586 5.212745 AGTCCCTATAAGTCCCTTCTTGAG 58.787 45.833 0.00 0.00 0.00 3.02
2770 3587 5.043281 AGTCCCTATAAGTCCCTTCTTGAGA 60.043 44.000 0.00 0.00 0.00 3.27
2771 3588 5.303333 GTCCCTATAAGTCCCTTCTTGAGAG 59.697 48.000 0.00 0.00 0.00 3.20
2772 3589 5.043281 TCCCTATAAGTCCCTTCTTGAGAGT 60.043 44.000 0.00 0.00 0.00 3.24
2773 3590 5.303333 CCCTATAAGTCCCTTCTTGAGAGTC 59.697 48.000 0.00 0.00 0.00 3.36
2774 3591 6.133356 CCTATAAGTCCCTTCTTGAGAGTCT 58.867 44.000 0.00 0.00 0.00 3.24
2775 3592 6.609616 CCTATAAGTCCCTTCTTGAGAGTCTT 59.390 42.308 0.00 0.00 0.00 3.01
2776 3593 7.780745 CCTATAAGTCCCTTCTTGAGAGTCTTA 59.219 40.741 0.00 0.00 0.00 2.10
2777 3594 9.362151 CTATAAGTCCCTTCTTGAGAGTCTTAT 57.638 37.037 0.00 0.00 32.14 1.73
2778 3595 6.943899 AAGTCCCTTCTTGAGAGTCTTATT 57.056 37.500 0.00 0.00 0.00 1.40
2779 3596 6.943899 AGTCCCTTCTTGAGAGTCTTATTT 57.056 37.500 0.00 0.00 0.00 1.40
2780 3597 6.941857 AGTCCCTTCTTGAGAGTCTTATTTC 58.058 40.000 0.00 0.00 0.00 2.17
2781 3598 6.498651 AGTCCCTTCTTGAGAGTCTTATTTCA 59.501 38.462 0.00 0.00 0.00 2.69
2782 3599 7.181845 AGTCCCTTCTTGAGAGTCTTATTTCAT 59.818 37.037 0.00 0.00 0.00 2.57
2783 3600 8.478877 GTCCCTTCTTGAGAGTCTTATTTCATA 58.521 37.037 0.00 0.00 0.00 2.15
2784 3601 9.046846 TCCCTTCTTGAGAGTCTTATTTCATAA 57.953 33.333 0.00 0.00 0.00 1.90
2785 3602 9.323985 CCCTTCTTGAGAGTCTTATTTCATAAG 57.676 37.037 0.00 0.00 42.78 1.73
2786 3603 9.883142 CCTTCTTGAGAGTCTTATTTCATAAGT 57.117 33.333 0.00 0.00 42.21 2.24
2796 3613 9.141400 AGTCTTATTTCATAAGTCTCAAACGAC 57.859 33.333 0.00 0.00 42.21 4.34
2797 3614 8.381387 GTCTTATTTCATAAGTCTCAAACGACC 58.619 37.037 0.00 0.00 42.21 4.79
2798 3615 8.092068 TCTTATTTCATAAGTCTCAAACGACCA 58.908 33.333 0.00 0.00 42.21 4.02
2799 3616 5.917541 TTTCATAAGTCTCAAACGACCAC 57.082 39.130 0.00 0.00 34.46 4.16
2800 3617 4.866508 TCATAAGTCTCAAACGACCACT 57.133 40.909 0.00 0.00 34.46 4.00
2801 3618 5.209818 TCATAAGTCTCAAACGACCACTT 57.790 39.130 0.00 0.00 34.46 3.16
2802 3619 5.607477 TCATAAGTCTCAAACGACCACTTT 58.393 37.500 0.00 0.00 34.46 2.66
2803 3620 6.751157 TCATAAGTCTCAAACGACCACTTTA 58.249 36.000 0.00 0.00 34.46 1.85
2804 3621 7.211573 TCATAAGTCTCAAACGACCACTTTAA 58.788 34.615 0.00 0.00 34.46 1.52
2805 3622 5.986004 AAGTCTCAAACGACCACTTTAAG 57.014 39.130 0.00 0.00 34.46 1.85
2806 3623 5.019785 AGTCTCAAACGACCACTTTAAGT 57.980 39.130 0.00 0.00 34.46 2.24
2807 3624 5.048507 AGTCTCAAACGACCACTTTAAGTC 58.951 41.667 0.00 0.00 34.46 3.01
2808 3625 4.210746 GTCTCAAACGACCACTTTAAGTCC 59.789 45.833 0.00 0.00 0.00 3.85
2809 3626 3.469739 TCAAACGACCACTTTAAGTCCC 58.530 45.455 0.00 0.00 0.00 4.46
2810 3627 3.135167 TCAAACGACCACTTTAAGTCCCT 59.865 43.478 0.00 0.00 0.00 4.20
2811 3628 4.344679 TCAAACGACCACTTTAAGTCCCTA 59.655 41.667 0.00 0.00 0.00 3.53
2812 3629 5.012354 TCAAACGACCACTTTAAGTCCCTAT 59.988 40.000 0.00 0.00 0.00 2.57
2813 3630 6.211184 TCAAACGACCACTTTAAGTCCCTATA 59.789 38.462 0.00 0.00 0.00 1.31
2814 3631 6.610075 AACGACCACTTTAAGTCCCTATAA 57.390 37.500 0.00 0.00 0.00 0.98
2815 3632 6.218108 ACGACCACTTTAAGTCCCTATAAG 57.782 41.667 0.00 0.00 0.00 1.73
2816 3633 5.718607 ACGACCACTTTAAGTCCCTATAAGT 59.281 40.000 0.00 0.00 0.00 2.24
2817 3634 6.127507 ACGACCACTTTAAGTCCCTATAAGTC 60.128 42.308 0.00 0.00 0.00 3.01
2818 3635 6.556974 ACCACTTTAAGTCCCTATAAGTCC 57.443 41.667 0.00 0.00 0.00 3.85
2819 3636 5.427806 ACCACTTTAAGTCCCTATAAGTCCC 59.572 44.000 0.00 0.00 0.00 4.46
2820 3637 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
2821 3638 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
2822 3639 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
2823 3640 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
2824 3641 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
2825 3642 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
2826 3643 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
2827 3644 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
2828 3645 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
2829 3646 4.037927 CCCTATAAGTCCCTCCTGTTTGA 58.962 47.826 0.00 0.00 0.00 2.69
2830 3647 4.660771 CCCTATAAGTCCCTCCTGTTTGAT 59.339 45.833 0.00 0.00 0.00 2.57
2831 3648 5.132816 CCCTATAAGTCCCTCCTGTTTGATT 59.867 44.000 0.00 0.00 0.00 2.57
2832 3649 6.353951 CCCTATAAGTCCCTCCTGTTTGATTT 60.354 42.308 0.00 0.00 0.00 2.17
2833 3650 7.147373 CCCTATAAGTCCCTCCTGTTTGATTTA 60.147 40.741 0.00 0.00 0.00 1.40
2834 3651 7.934120 CCTATAAGTCCCTCCTGTTTGATTTAG 59.066 40.741 0.00 0.00 0.00 1.85
2835 3652 5.843019 AAGTCCCTCCTGTTTGATTTAGA 57.157 39.130 0.00 0.00 0.00 2.10
2836 3653 6.394345 AAGTCCCTCCTGTTTGATTTAGAT 57.606 37.500 0.00 0.00 0.00 1.98
2837 3654 5.749462 AGTCCCTCCTGTTTGATTTAGATG 58.251 41.667 0.00 0.00 0.00 2.90
2838 3655 5.251700 AGTCCCTCCTGTTTGATTTAGATGT 59.748 40.000 0.00 0.00 0.00 3.06
2839 3656 5.355350 GTCCCTCCTGTTTGATTTAGATGTG 59.645 44.000 0.00 0.00 0.00 3.21
2840 3657 5.250543 TCCCTCCTGTTTGATTTAGATGTGA 59.749 40.000 0.00 0.00 0.00 3.58
2841 3658 5.355350 CCCTCCTGTTTGATTTAGATGTGAC 59.645 44.000 0.00 0.00 0.00 3.67
2842 3659 6.176183 CCTCCTGTTTGATTTAGATGTGACT 58.824 40.000 0.00 0.00 0.00 3.41
2843 3660 6.656693 CCTCCTGTTTGATTTAGATGTGACTT 59.343 38.462 0.00 0.00 0.00 3.01
2844 3661 7.824289 CCTCCTGTTTGATTTAGATGTGACTTA 59.176 37.037 0.00 0.00 0.00 2.24
2845 3662 9.388506 CTCCTGTTTGATTTAGATGTGACTTAT 57.611 33.333 0.00 0.00 0.00 1.73
2849 3666 9.613428 TGTTTGATTTAGATGTGACTTATAGGG 57.387 33.333 0.00 0.00 0.00 3.53
2850 3667 9.832445 GTTTGATTTAGATGTGACTTATAGGGA 57.168 33.333 0.00 0.00 0.00 4.20
2851 3668 9.832445 TTTGATTTAGATGTGACTTATAGGGAC 57.168 33.333 0.00 0.00 0.00 4.46
2852 3669 8.783660 TGATTTAGATGTGACTTATAGGGACT 57.216 34.615 0.00 0.00 46.37 3.85
2853 3670 9.213777 TGATTTAGATGTGACTTATAGGGACTT 57.786 33.333 0.00 0.00 41.75 3.01
2878 3695 8.715190 TTTTTAAGTCCCTAAGCCAATAAGTT 57.285 30.769 0.00 0.00 0.00 2.66
2879 3696 7.933215 TTTAAGTCCCTAAGCCAATAAGTTC 57.067 36.000 0.00 0.00 0.00 3.01
2880 3697 5.514500 AAGTCCCTAAGCCAATAAGTTCA 57.486 39.130 0.00 0.00 0.00 3.18
2881 3698 5.717119 AGTCCCTAAGCCAATAAGTTCAT 57.283 39.130 0.00 0.00 0.00 2.57
2882 3699 5.440610 AGTCCCTAAGCCAATAAGTTCATG 58.559 41.667 0.00 0.00 0.00 3.07
2883 3700 4.580580 GTCCCTAAGCCAATAAGTTCATGG 59.419 45.833 0.00 3.08 37.29 3.66
2884 3701 4.476846 TCCCTAAGCCAATAAGTTCATGGA 59.523 41.667 10.29 0.00 36.27 3.41
2885 3702 5.044476 TCCCTAAGCCAATAAGTTCATGGAA 60.044 40.000 10.29 0.00 36.27 3.53
2886 3703 5.656416 CCCTAAGCCAATAAGTTCATGGAAA 59.344 40.000 10.29 0.00 36.27 3.13
2887 3704 6.405842 CCCTAAGCCAATAAGTTCATGGAAAC 60.406 42.308 10.29 0.00 36.27 2.78
2902 3719 4.781775 TGGAAACAAACACCCTCTAAGA 57.218 40.909 0.00 0.00 37.44 2.10
2903 3720 4.457466 TGGAAACAAACACCCTCTAAGAC 58.543 43.478 0.00 0.00 37.44 3.01
2904 3721 4.165372 TGGAAACAAACACCCTCTAAGACT 59.835 41.667 0.00 0.00 37.44 3.24
2905 3722 5.131067 GGAAACAAACACCCTCTAAGACTT 58.869 41.667 0.00 0.00 0.00 3.01
2906 3723 6.126710 TGGAAACAAACACCCTCTAAGACTTA 60.127 38.462 0.00 0.00 37.44 2.24
2907 3724 6.769341 GGAAACAAACACCCTCTAAGACTTAA 59.231 38.462 0.00 0.00 0.00 1.85
2908 3725 7.255035 GGAAACAAACACCCTCTAAGACTTAAC 60.255 40.741 0.00 0.00 0.00 2.01
2909 3726 5.618236 ACAAACACCCTCTAAGACTTAACC 58.382 41.667 0.00 0.00 0.00 2.85
2910 3727 5.131475 ACAAACACCCTCTAAGACTTAACCA 59.869 40.000 0.00 0.00 0.00 3.67
2911 3728 5.899631 AACACCCTCTAAGACTTAACCAA 57.100 39.130 0.00 0.00 0.00 3.67
2912 3729 5.485209 ACACCCTCTAAGACTTAACCAAG 57.515 43.478 0.00 0.00 37.81 3.61
2931 3748 7.151999 ACCAAGTCTCAGTCGATGATATATC 57.848 40.000 5.73 5.73 37.28 1.63
2954 3771 5.597813 CGCAGGATTTTACATGTAGATCC 57.402 43.478 27.14 27.14 0.00 3.36
2956 3773 4.452455 GCAGGATTTTACATGTAGATCCGG 59.548 45.833 27.34 27.34 0.00 5.14
2958 3775 4.658901 AGGATTTTACATGTAGATCCGGGT 59.341 41.667 27.50 17.12 0.00 5.28
2959 3776 5.842328 AGGATTTTACATGTAGATCCGGGTA 59.158 40.000 27.50 4.88 0.00 3.69
2962 3779 7.499895 GGATTTTACATGTAGATCCGGGTAAAA 59.500 37.037 23.56 17.57 41.81 1.52
2963 3780 8.810990 ATTTTACATGTAGATCCGGGTAAAAA 57.189 30.769 18.55 1.82 41.29 1.94
3008 3828 9.686683 AAGTTATTATGTCAATTGACTTAGGCT 57.313 29.630 32.57 22.16 44.99 4.58
3009 3829 9.686683 AGTTATTATGTCAATTGACTTAGGCTT 57.313 29.630 32.57 19.52 44.99 4.35
3010 3830 9.937175 GTTATTATGTCAATTGACTTAGGCTTC 57.063 33.333 32.57 18.31 44.99 3.86
3011 3831 6.662414 TTATGTCAATTGACTTAGGCTTCG 57.338 37.500 32.57 0.00 44.99 3.79
3012 3832 4.002906 TGTCAATTGACTTAGGCTTCGT 57.997 40.909 32.57 0.00 44.99 3.85
3013 3833 4.385825 TGTCAATTGACTTAGGCTTCGTT 58.614 39.130 32.57 0.00 44.99 3.85
3014 3834 5.543714 TGTCAATTGACTTAGGCTTCGTTA 58.456 37.500 32.57 10.54 44.99 3.18
3015 3835 5.992829 TGTCAATTGACTTAGGCTTCGTTAA 59.007 36.000 32.57 10.14 44.99 2.01
3016 3836 6.147164 TGTCAATTGACTTAGGCTTCGTTAAG 59.853 38.462 32.57 0.00 44.99 1.85
3017 3837 6.147328 GTCAATTGACTTAGGCTTCGTTAAGT 59.853 38.462 27.66 0.00 41.48 2.24
3020 3840 5.056894 TGACTTAGGCTTCGTTAAGTCTC 57.943 43.478 21.44 4.48 44.47 3.36
3021 3841 4.521639 TGACTTAGGCTTCGTTAAGTCTCA 59.478 41.667 21.44 6.55 44.47 3.27
3022 3842 5.061920 ACTTAGGCTTCGTTAAGTCTCAG 57.938 43.478 0.00 0.00 44.47 3.35
3023 3843 4.523558 ACTTAGGCTTCGTTAAGTCTCAGT 59.476 41.667 0.00 1.72 44.47 3.41
3024 3844 3.579335 AGGCTTCGTTAAGTCTCAGTC 57.421 47.619 0.00 0.00 44.47 3.51
3025 3845 2.095161 AGGCTTCGTTAAGTCTCAGTCG 60.095 50.000 0.00 0.00 44.47 4.18
3026 3846 2.095364 GGCTTCGTTAAGTCTCAGTCGA 60.095 50.000 0.00 0.00 34.34 4.20
3027 3847 2.909863 GCTTCGTTAAGTCTCAGTCGAC 59.090 50.000 7.70 7.70 34.99 4.20
3028 3848 3.365164 GCTTCGTTAAGTCTCAGTCGACT 60.365 47.826 13.58 13.58 45.73 4.18
3029 3849 3.808116 TCGTTAAGTCTCAGTCGACTG 57.192 47.619 34.76 34.76 43.14 3.51
3030 3850 3.136763 TCGTTAAGTCTCAGTCGACTGT 58.863 45.455 37.21 23.96 43.14 3.55
3031 3851 3.059120 TCGTTAAGTCTCAGTCGACTGTG 60.059 47.826 37.21 34.47 43.14 3.66
3032 3852 3.059120 CGTTAAGTCTCAGTCGACTGTGA 60.059 47.826 37.21 35.87 43.14 3.58
3038 3858 3.676093 TCTCAGTCGACTGTGACATAGT 58.324 45.455 37.21 4.29 44.12 2.12
3039 3859 3.685272 TCTCAGTCGACTGTGACATAGTC 59.315 47.826 37.21 19.40 44.12 2.59
3040 3860 3.408634 TCAGTCGACTGTGACATAGTCA 58.591 45.455 37.21 17.03 43.65 3.41
3097 3917 9.787435 TTGTTTGGATTACTTATCACAACTAGT 57.213 29.630 0.00 0.00 34.77 2.57
3138 3958 4.748102 GCCGTATGCAGCAACTTAATAGTA 59.252 41.667 0.00 0.00 40.77 1.82
3148 3968 7.476492 GCAGCAACTTAATAGTAACACGTTAAC 59.524 37.037 0.00 0.00 33.17 2.01
3167 3987 1.221414 CTGCTTATTAGTGCCTCCGC 58.779 55.000 0.00 0.00 0.00 5.54
3187 4007 6.604930 TCCGCTTTAGCAAGTTAAATTGTAC 58.395 36.000 16.26 1.82 42.21 2.90
3241 4061 7.634671 TTAGTTACGATCACATCTAAGTCCA 57.365 36.000 0.00 0.00 0.00 4.02
3275 4100 6.909357 CGCTGGTTTTTAATTTTCATGCAAAA 59.091 30.769 0.00 0.59 38.38 2.44
3278 4103 9.947669 CTGGTTTTTAATTTTCATGCAAAATCA 57.052 25.926 12.96 0.00 42.86 2.57
3324 4149 2.158058 ATTGTCTTGTCACACGCGCG 62.158 55.000 30.96 30.96 0.00 6.86
3405 4230 6.913873 TTATATTGGGTTACGTTCTCAAGC 57.086 37.500 10.54 1.47 0.00 4.01
3409 4234 1.067635 GGGTTACGTTCTCAAGCGGTA 60.068 52.381 0.00 0.00 0.00 4.02
3410 4235 1.988467 GGTTACGTTCTCAAGCGGTAC 59.012 52.381 0.00 0.00 0.00 3.34
3444 4269 5.468072 TCTGCTTTGTTTGTTTTCTTTTGCA 59.532 32.000 0.00 0.00 0.00 4.08
3537 4362 9.434275 TTTCTTTGGATGTCTATATCTACCTGA 57.566 33.333 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.485216 CGGTCGCTAAATTCAACATCACC 60.485 47.826 0.00 0.00 0.00 4.02
24 25 3.331150 ACGGTCGCTAAATTCAACATCA 58.669 40.909 0.00 0.00 0.00 3.07
45 46 1.585006 GACAGGCGAACGAGGAAGA 59.415 57.895 0.00 0.00 0.00 2.87
51 52 4.415332 GCGAGGACAGGCGAACGA 62.415 66.667 0.00 0.00 0.00 3.85
96 98 0.933791 AGAGGAGGGTGGAGAGGGAT 60.934 60.000 0.00 0.00 0.00 3.85
134 136 0.948623 CCCGCAAGACGTCATCAACA 60.949 55.000 19.50 0.00 41.42 3.33
180 182 2.139917 CTGGTCGAGATAGACGAGGAG 58.860 57.143 0.00 0.00 41.36 3.69
189 191 1.681538 GTCTCAGCCTGGTCGAGATA 58.318 55.000 16.73 0.00 38.05 1.98
305 309 1.144093 TCCCGTTGGGACATGAACTTT 59.856 47.619 0.00 0.00 46.17 2.66
376 380 1.663739 CTCGGAACCTTCGACACCA 59.336 57.895 0.00 0.00 32.86 4.17
488 495 4.769063 CACGCCACCATACCGCCA 62.769 66.667 0.00 0.00 0.00 5.69
533 551 2.192861 CCGCTCTCTCATCGCTCCT 61.193 63.158 0.00 0.00 0.00 3.69
553 571 1.032114 ATAAACTTGCAGCGCCCTCC 61.032 55.000 2.29 0.00 0.00 4.30
567 585 1.333791 GCGTTCGGCATGCCTATAAAC 60.334 52.381 33.07 26.18 42.87 2.01
617 635 3.411351 GCGCGCACGGAAGAAAGA 61.411 61.111 29.10 0.00 40.57 2.52
671 693 1.133869 GGGACATTTTCGCGTTCCG 59.866 57.895 5.77 0.00 38.61 4.30
675 697 2.744709 CGGGGGACATTTTCGCGT 60.745 61.111 5.77 0.00 38.08 6.01
705 729 2.647791 GCGCGCGAGGTAAAATGC 60.648 61.111 37.18 7.53 0.00 3.56
725 749 0.454957 CATCTCCAACGCGCCAAAAG 60.455 55.000 5.73 0.00 0.00 2.27
754 784 6.494666 ACAATATACGGATGAAAAGAGGGA 57.505 37.500 0.00 0.00 0.00 4.20
757 787 8.223769 GTGCATACAATATACGGATGAAAAGAG 58.776 37.037 0.00 0.00 0.00 2.85
758 788 7.095816 CGTGCATACAATATACGGATGAAAAGA 60.096 37.037 0.00 0.00 0.00 2.52
759 789 7.009440 CGTGCATACAATATACGGATGAAAAG 58.991 38.462 0.00 0.00 0.00 2.27
760 790 6.480651 ACGTGCATACAATATACGGATGAAAA 59.519 34.615 0.00 0.00 38.92 2.29
761 791 5.986741 ACGTGCATACAATATACGGATGAAA 59.013 36.000 0.00 0.00 38.92 2.69
762 792 5.534407 ACGTGCATACAATATACGGATGAA 58.466 37.500 0.00 0.00 38.92 2.57
763 793 5.048294 AGACGTGCATACAATATACGGATGA 60.048 40.000 0.00 0.00 38.92 2.92
764 794 5.060940 CAGACGTGCATACAATATACGGATG 59.939 44.000 0.00 0.00 38.92 3.51
765 795 5.048294 TCAGACGTGCATACAATATACGGAT 60.048 40.000 0.00 0.00 38.92 4.18
766 796 4.276431 TCAGACGTGCATACAATATACGGA 59.724 41.667 0.00 0.00 38.92 4.69
767 797 4.381863 GTCAGACGTGCATACAATATACGG 59.618 45.833 0.00 0.00 38.92 4.02
768 798 5.115622 CAGTCAGACGTGCATACAATATACG 59.884 44.000 0.00 0.00 40.30 3.06
769 799 5.107837 GCAGTCAGACGTGCATACAATATAC 60.108 44.000 15.94 0.00 39.62 1.47
770 800 4.982295 GCAGTCAGACGTGCATACAATATA 59.018 41.667 15.94 0.00 39.62 0.86
771 801 3.804325 GCAGTCAGACGTGCATACAATAT 59.196 43.478 15.94 0.00 39.62 1.28
772 802 3.186909 GCAGTCAGACGTGCATACAATA 58.813 45.455 15.94 0.00 39.62 1.90
773 803 2.002586 GCAGTCAGACGTGCATACAAT 58.997 47.619 15.94 0.00 39.62 2.71
774 804 1.428448 GCAGTCAGACGTGCATACAA 58.572 50.000 15.94 0.00 39.62 2.41
775 805 0.389817 GGCAGTCAGACGTGCATACA 60.390 55.000 20.06 0.00 41.75 2.29
776 806 0.389817 TGGCAGTCAGACGTGCATAC 60.390 55.000 20.06 8.86 41.75 2.39
777 807 0.320050 TTGGCAGTCAGACGTGCATA 59.680 50.000 20.06 10.27 41.75 3.14
781 811 0.518636 CCATTTGGCAGTCAGACGTG 59.481 55.000 0.00 0.00 0.00 4.49
785 815 2.507484 CTGTTCCATTTGGCAGTCAGA 58.493 47.619 0.00 0.00 34.44 3.27
792 822 1.202290 CGGTATGCTGTTCCATTTGGC 60.202 52.381 0.00 0.00 34.44 4.52
839 1622 1.808531 GCAGCTTGCAACCACATGGA 61.809 55.000 4.53 0.00 44.26 3.41
851 1634 2.253452 GCGAACACCAGCAGCTTG 59.747 61.111 0.00 0.00 0.00 4.01
858 1641 3.411351 CCGAACGGCGAACACCAG 61.411 66.667 16.62 0.00 44.57 4.00
914 1697 3.167485 ACTGGTTCCATTGTACTCCGTA 58.833 45.455 0.00 0.00 0.00 4.02
915 1698 1.975680 ACTGGTTCCATTGTACTCCGT 59.024 47.619 0.00 0.00 0.00 4.69
916 1699 2.762535 ACTGGTTCCATTGTACTCCG 57.237 50.000 0.00 0.00 0.00 4.63
917 1700 7.310485 CCCTATATACTGGTTCCATTGTACTCC 60.310 44.444 0.00 0.00 0.00 3.85
918 1701 7.234988 ACCCTATATACTGGTTCCATTGTACTC 59.765 40.741 0.00 0.00 0.00 2.59
919 1702 7.016268 CACCCTATATACTGGTTCCATTGTACT 59.984 40.741 0.00 0.00 0.00 2.73
920 1703 7.159372 CACCCTATATACTGGTTCCATTGTAC 58.841 42.308 0.00 0.00 0.00 2.90
932 1715 5.174395 GCTTCTCATGCACCCTATATACTG 58.826 45.833 0.00 0.00 0.00 2.74
1084 1883 1.003233 GGTTGAGGTGGCTCTGGAC 60.003 63.158 0.00 0.00 0.00 4.02
1219 2018 0.040692 TCCTTGTTGTCGACGTCTCG 60.041 55.000 14.70 1.54 41.65 4.04
1632 2431 2.730066 TACCCGTGGTGTCGACGAGA 62.730 60.000 11.62 0.00 39.21 4.04
1650 2449 3.003173 ACCTTGGCCAGCTCGCTA 61.003 61.111 5.11 0.00 0.00 4.26
1684 2483 0.667792 AAGCGCTCGAACAGTTCTCC 60.668 55.000 12.06 0.00 0.00 3.71
1871 2676 1.555075 GCCACTCCATGTACCTCTTCA 59.445 52.381 0.00 0.00 0.00 3.02
1907 2712 1.108727 AACGTACACCACCGACCTCA 61.109 55.000 0.00 0.00 0.00 3.86
2208 3013 2.590291 TCGAACAAGCTTGGCGCA 60.590 55.556 29.18 17.68 42.61 6.09
2266 3071 4.689549 TTCCCCTCTGACGCCGGA 62.690 66.667 5.05 0.00 0.00 5.14
2361 3166 6.780031 CCTCTACTCTTTCCCTGATCTCAATA 59.220 42.308 0.00 0.00 0.00 1.90
2525 3334 0.534427 ATCCACTCCAGCATGCATCG 60.534 55.000 21.98 7.66 31.97 3.84
2591 3408 6.059787 AGACAACTGAGATTTAGCAATCCT 57.940 37.500 0.00 0.00 39.95 3.24
2610 3427 1.145571 ACCAAACAGGGCCTTAGACA 58.854 50.000 1.32 0.00 43.89 3.41
2612 3429 1.777878 TGAACCAAACAGGGCCTTAGA 59.222 47.619 1.32 0.00 43.89 2.10
2615 3432 0.032615 TGTGAACCAAACAGGGCCTT 60.033 50.000 1.32 0.00 43.89 4.35
2616 3433 0.032615 TTGTGAACCAAACAGGGCCT 60.033 50.000 0.00 0.00 43.89 5.19
2617 3434 0.389025 CTTGTGAACCAAACAGGGCC 59.611 55.000 0.00 0.00 43.89 5.80
2618 3435 1.067060 GACTTGTGAACCAAACAGGGC 59.933 52.381 0.00 0.00 43.89 5.19
2619 3436 1.681264 GGACTTGTGAACCAAACAGGG 59.319 52.381 0.00 0.00 43.89 4.45
2620 3437 2.654863 AGGACTTGTGAACCAAACAGG 58.345 47.619 0.00 0.00 45.67 4.00
2621 3438 4.196193 TGTAGGACTTGTGAACCAAACAG 58.804 43.478 0.00 0.00 31.20 3.16
2622 3439 4.223556 TGTAGGACTTGTGAACCAAACA 57.776 40.909 0.00 0.00 31.20 2.83
2623 3440 4.638865 AGTTGTAGGACTTGTGAACCAAAC 59.361 41.667 0.00 0.00 31.20 2.93
2624 3441 4.850680 AGTTGTAGGACTTGTGAACCAAA 58.149 39.130 0.00 0.00 31.20 3.28
2625 3442 4.497291 AGTTGTAGGACTTGTGAACCAA 57.503 40.909 0.00 0.00 0.00 3.67
2626 3443 4.497291 AAGTTGTAGGACTTGTGAACCA 57.503 40.909 0.00 0.00 38.39 3.67
2627 3444 5.830000 AAAAGTTGTAGGACTTGTGAACC 57.170 39.130 0.00 0.00 39.68 3.62
2648 3465 9.643735 TTGGGACTTATAAGTTGGAACTAAAAA 57.356 29.630 18.96 1.50 39.88 1.94
2649 3466 9.292195 CTTGGGACTTATAAGTTGGAACTAAAA 57.708 33.333 18.96 4.39 39.88 1.52
2650 3467 8.442374 ACTTGGGACTTATAAGTTGGAACTAAA 58.558 33.333 18.96 5.70 39.88 1.85
2651 3468 7.981142 ACTTGGGACTTATAAGTTGGAACTAA 58.019 34.615 18.96 10.32 39.88 2.24
2652 3469 7.310858 GGACTTGGGACTTATAAGTTGGAACTA 60.311 40.741 18.96 3.96 39.88 2.24
2653 3470 6.449830 ACTTGGGACTTATAAGTTGGAACT 57.550 37.500 18.96 0.00 39.88 3.01
2654 3471 5.646793 GGACTTGGGACTTATAAGTTGGAAC 59.353 44.000 18.96 6.19 39.88 3.62
2655 3472 5.550403 AGGACTTGGGACTTATAAGTTGGAA 59.450 40.000 18.96 10.65 39.88 3.53
2656 3473 5.098663 AGGACTTGGGACTTATAAGTTGGA 58.901 41.667 18.96 3.79 39.88 3.53
2657 3474 5.045869 TGAGGACTTGGGACTTATAAGTTGG 60.046 44.000 18.96 10.07 39.88 3.77
2658 3475 6.049955 TGAGGACTTGGGACTTATAAGTTG 57.950 41.667 18.96 9.81 39.88 3.16
2659 3476 6.697641 TTGAGGACTTGGGACTTATAAGTT 57.302 37.500 18.96 2.29 39.88 2.66
2660 3477 6.697641 TTTGAGGACTTGGGACTTATAAGT 57.302 37.500 18.05 18.05 43.16 2.24
2661 3478 7.665974 ACTTTTTGAGGACTTGGGACTTATAAG 59.334 37.037 11.05 11.05 0.00 1.73
2662 3479 7.523415 ACTTTTTGAGGACTTGGGACTTATAA 58.477 34.615 0.00 0.00 0.00 0.98
2663 3480 7.086685 ACTTTTTGAGGACTTGGGACTTATA 57.913 36.000 0.00 0.00 0.00 0.98
2664 3481 5.953571 ACTTTTTGAGGACTTGGGACTTAT 58.046 37.500 0.00 0.00 0.00 1.73
2665 3482 5.374071 GACTTTTTGAGGACTTGGGACTTA 58.626 41.667 0.00 0.00 0.00 2.24
2666 3483 4.207955 GACTTTTTGAGGACTTGGGACTT 58.792 43.478 0.00 0.00 0.00 3.01
2667 3484 3.435169 GGACTTTTTGAGGACTTGGGACT 60.435 47.826 0.00 0.00 0.00 3.85
2668 3485 2.885266 GGACTTTTTGAGGACTTGGGAC 59.115 50.000 0.00 0.00 0.00 4.46
2669 3486 2.158519 GGGACTTTTTGAGGACTTGGGA 60.159 50.000 0.00 0.00 0.00 4.37
2670 3487 2.158460 AGGGACTTTTTGAGGACTTGGG 60.158 50.000 0.00 0.00 27.25 4.12
2671 3488 3.229697 AGGGACTTTTTGAGGACTTGG 57.770 47.619 0.00 0.00 27.25 3.61
2672 3489 4.714632 TGTAGGGACTTTTTGAGGACTTG 58.285 43.478 0.00 0.00 41.75 3.16
2673 3490 5.163088 ACATGTAGGGACTTTTTGAGGACTT 60.163 40.000 0.00 0.00 41.75 3.01
2674 3491 4.351111 ACATGTAGGGACTTTTTGAGGACT 59.649 41.667 0.00 0.00 41.75 3.85
2675 3492 4.652822 ACATGTAGGGACTTTTTGAGGAC 58.347 43.478 0.00 0.00 41.75 3.85
2676 3493 4.993705 ACATGTAGGGACTTTTTGAGGA 57.006 40.909 0.00 0.00 41.75 3.71
2677 3494 5.278957 CCAAACATGTAGGGACTTTTTGAGG 60.279 44.000 9.55 0.00 41.75 3.86
2678 3495 5.301805 ACCAAACATGTAGGGACTTTTTGAG 59.698 40.000 19.48 5.71 41.75 3.02
2679 3496 5.205056 ACCAAACATGTAGGGACTTTTTGA 58.795 37.500 19.48 0.00 41.75 2.69
2680 3497 5.529581 ACCAAACATGTAGGGACTTTTTG 57.470 39.130 19.48 8.12 41.75 2.44
2681 3498 5.069914 GGAACCAAACATGTAGGGACTTTTT 59.930 40.000 19.48 5.69 41.75 1.94
2682 3499 4.587262 GGAACCAAACATGTAGGGACTTTT 59.413 41.667 19.48 6.31 41.75 2.27
2683 3500 4.141018 AGGAACCAAACATGTAGGGACTTT 60.141 41.667 19.48 6.62 41.75 2.66
2684 3501 3.397955 AGGAACCAAACATGTAGGGACTT 59.602 43.478 19.48 6.91 41.75 3.01
2685 3502 2.986728 AGGAACCAAACATGTAGGGACT 59.013 45.455 19.48 11.76 46.37 3.85
2686 3503 3.081804 CAGGAACCAAACATGTAGGGAC 58.918 50.000 19.48 12.61 0.00 4.46
2687 3504 2.041081 CCAGGAACCAAACATGTAGGGA 59.959 50.000 19.48 0.00 0.00 4.20
2688 3505 2.446435 CCAGGAACCAAACATGTAGGG 58.554 52.381 18.43 15.73 0.00 3.53
2689 3506 2.041081 TCCCAGGAACCAAACATGTAGG 59.959 50.000 14.04 14.04 0.00 3.18
2690 3507 3.081804 GTCCCAGGAACCAAACATGTAG 58.918 50.000 0.00 0.00 0.00 2.74
2691 3508 2.714250 AGTCCCAGGAACCAAACATGTA 59.286 45.455 0.00 0.00 0.00 2.29
2692 3509 1.499007 AGTCCCAGGAACCAAACATGT 59.501 47.619 0.00 0.00 0.00 3.21
2693 3510 2.292828 AGTCCCAGGAACCAAACATG 57.707 50.000 0.00 0.00 0.00 3.21
2694 3511 4.675063 ATAAGTCCCAGGAACCAAACAT 57.325 40.909 0.00 0.00 0.00 2.71
2695 3512 5.073965 ACTTATAAGTCCCAGGAACCAAACA 59.926 40.000 12.50 0.00 32.86 2.83
2696 3513 5.567430 ACTTATAAGTCCCAGGAACCAAAC 58.433 41.667 12.50 0.00 32.86 2.93
2697 3514 5.853572 ACTTATAAGTCCCAGGAACCAAA 57.146 39.130 12.50 0.00 32.86 3.28
2716 3533 9.448587 AGTTGTAATATGGTCTTATAGGGACTT 57.551 33.333 7.52 0.00 41.75 3.01
2726 3543 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
2735 3552 9.372189 GGGACTTATAGGGACTTATAGTTGTAA 57.628 37.037 0.00 0.00 41.75 2.41
2736 3553 8.740512 AGGGACTTATAGGGACTTATAGTTGTA 58.259 37.037 0.00 0.00 34.75 2.41
2737 3554 7.602868 AGGGACTTATAGGGACTTATAGTTGT 58.397 38.462 0.00 0.00 34.75 3.32
2757 3574 6.702329 TGAAATAAGACTCTCAAGAAGGGAC 58.298 40.000 0.00 0.00 0.00 4.46
2758 3575 6.935240 TGAAATAAGACTCTCAAGAAGGGA 57.065 37.500 0.00 0.00 0.00 4.20
2774 3591 7.876068 AGTGGTCGTTTGAGACTTATGAAATAA 59.124 33.333 0.00 0.00 40.76 1.40
2775 3592 7.383687 AGTGGTCGTTTGAGACTTATGAAATA 58.616 34.615 0.00 0.00 40.76 1.40
2776 3593 6.231211 AGTGGTCGTTTGAGACTTATGAAAT 58.769 36.000 0.00 0.00 40.76 2.17
2777 3594 5.607477 AGTGGTCGTTTGAGACTTATGAAA 58.393 37.500 0.00 0.00 40.76 2.69
2778 3595 5.209818 AGTGGTCGTTTGAGACTTATGAA 57.790 39.130 0.00 0.00 40.76 2.57
2779 3596 4.866508 AGTGGTCGTTTGAGACTTATGA 57.133 40.909 0.00 0.00 40.76 2.15
2780 3597 5.924475 AAAGTGGTCGTTTGAGACTTATG 57.076 39.130 0.00 0.00 40.76 1.90
2781 3598 7.215085 ACTTAAAGTGGTCGTTTGAGACTTAT 58.785 34.615 0.00 0.00 40.76 1.73
2782 3599 6.576185 ACTTAAAGTGGTCGTTTGAGACTTA 58.424 36.000 0.00 0.00 40.76 2.24
2783 3600 5.425630 ACTTAAAGTGGTCGTTTGAGACTT 58.574 37.500 0.00 0.00 40.76 3.01
2784 3601 5.019785 ACTTAAAGTGGTCGTTTGAGACT 57.980 39.130 0.00 0.00 40.76 3.24
2785 3602 4.210746 GGACTTAAAGTGGTCGTTTGAGAC 59.789 45.833 0.00 0.00 40.25 3.36
2786 3603 4.374399 GGACTTAAAGTGGTCGTTTGAGA 58.626 43.478 0.00 0.00 33.70 3.27
2787 3604 3.497262 GGGACTTAAAGTGGTCGTTTGAG 59.503 47.826 0.00 0.00 33.70 3.02
2788 3605 3.135167 AGGGACTTAAAGTGGTCGTTTGA 59.865 43.478 0.00 0.00 27.25 2.69
2789 3606 3.473625 AGGGACTTAAAGTGGTCGTTTG 58.526 45.455 0.00 0.00 27.25 2.93
2790 3607 3.851458 AGGGACTTAAAGTGGTCGTTT 57.149 42.857 0.00 0.00 27.25 3.60
2791 3608 6.212187 ACTTATAGGGACTTAAAGTGGTCGTT 59.788 38.462 0.00 0.00 39.58 3.85
2792 3609 5.718607 ACTTATAGGGACTTAAAGTGGTCGT 59.281 40.000 0.00 0.00 39.58 4.34
2793 3610 6.218108 ACTTATAGGGACTTAAAGTGGTCG 57.782 41.667 0.00 0.00 39.58 4.79
2794 3611 6.407865 GGGACTTATAGGGACTTAAAGTGGTC 60.408 46.154 0.00 0.00 40.60 4.02
2795 3612 5.427806 GGGACTTATAGGGACTTAAAGTGGT 59.572 44.000 0.00 0.00 40.60 4.16
2796 3613 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
2797 3614 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
2798 3615 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
2799 3616 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
2800 3617 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
2801 3618 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
2802 3619 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
2803 3620 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
2804 3621 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
2805 3622 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
2806 3623 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
2807 3624 4.037927 TCAAACAGGAGGGACTTATAGGG 58.962 47.826 0.00 0.00 41.55 3.53
2808 3625 5.896073 ATCAAACAGGAGGGACTTATAGG 57.104 43.478 0.00 0.00 41.55 2.57
2809 3626 8.705594 TCTAAATCAAACAGGAGGGACTTATAG 58.294 37.037 0.00 0.00 41.55 1.31
2810 3627 8.618240 TCTAAATCAAACAGGAGGGACTTATA 57.382 34.615 0.00 0.00 41.55 0.98
2811 3628 7.510675 TCTAAATCAAACAGGAGGGACTTAT 57.489 36.000 0.00 0.00 41.55 1.73
2812 3629 6.945636 TCTAAATCAAACAGGAGGGACTTA 57.054 37.500 0.00 0.00 41.55 2.24
2813 3630 5.843019 TCTAAATCAAACAGGAGGGACTT 57.157 39.130 0.00 0.00 41.55 3.01
2815 3632 5.355350 CACATCTAAATCAAACAGGAGGGAC 59.645 44.000 0.00 0.00 0.00 4.46
2816 3633 5.250543 TCACATCTAAATCAAACAGGAGGGA 59.749 40.000 0.00 0.00 0.00 4.20
2817 3634 5.355350 GTCACATCTAAATCAAACAGGAGGG 59.645 44.000 0.00 0.00 0.00 4.30
2818 3635 6.176183 AGTCACATCTAAATCAAACAGGAGG 58.824 40.000 0.00 0.00 0.00 4.30
2819 3636 7.678947 AAGTCACATCTAAATCAAACAGGAG 57.321 36.000 0.00 0.00 0.00 3.69
2823 3640 9.613428 CCCTATAAGTCACATCTAAATCAAACA 57.387 33.333 0.00 0.00 0.00 2.83
2824 3641 9.832445 TCCCTATAAGTCACATCTAAATCAAAC 57.168 33.333 0.00 0.00 0.00 2.93
2825 3642 9.832445 GTCCCTATAAGTCACATCTAAATCAAA 57.168 33.333 0.00 0.00 0.00 2.69
2826 3643 9.213777 AGTCCCTATAAGTCACATCTAAATCAA 57.786 33.333 0.00 0.00 0.00 2.57
2827 3644 8.783660 AGTCCCTATAAGTCACATCTAAATCA 57.216 34.615 0.00 0.00 0.00 2.57
2853 3670 8.715190 AACTTATTGGCTTAGGGACTTAAAAA 57.285 30.769 0.00 0.00 41.75 1.94
2854 3671 7.945664 TGAACTTATTGGCTTAGGGACTTAAAA 59.054 33.333 0.00 0.00 41.75 1.52
2855 3672 7.463431 TGAACTTATTGGCTTAGGGACTTAAA 58.537 34.615 0.00 0.00 41.75 1.52
2856 3673 7.023171 TGAACTTATTGGCTTAGGGACTTAA 57.977 36.000 0.00 0.00 41.75 1.85
2857 3674 6.630203 TGAACTTATTGGCTTAGGGACTTA 57.370 37.500 0.00 0.00 41.75 2.24
2858 3675 5.514500 TGAACTTATTGGCTTAGGGACTT 57.486 39.130 0.00 0.00 41.75 3.01
2859 3676 5.440610 CATGAACTTATTGGCTTAGGGACT 58.559 41.667 0.00 0.00 46.37 3.85
2860 3677 4.580580 CCATGAACTTATTGGCTTAGGGAC 59.419 45.833 0.00 0.00 0.00 4.46
2861 3678 4.476846 TCCATGAACTTATTGGCTTAGGGA 59.523 41.667 0.00 0.00 0.00 4.20
2862 3679 4.792068 TCCATGAACTTATTGGCTTAGGG 58.208 43.478 0.00 0.00 0.00 3.53
2863 3680 6.152661 TGTTTCCATGAACTTATTGGCTTAGG 59.847 38.462 0.00 0.00 0.00 2.69
2864 3681 7.156876 TGTTTCCATGAACTTATTGGCTTAG 57.843 36.000 0.00 0.00 0.00 2.18
2865 3682 7.531857 TTGTTTCCATGAACTTATTGGCTTA 57.468 32.000 0.00 0.00 0.00 3.09
2866 3683 6.418057 TTGTTTCCATGAACTTATTGGCTT 57.582 33.333 0.00 0.00 0.00 4.35
2867 3684 6.183360 TGTTTGTTTCCATGAACTTATTGGCT 60.183 34.615 0.00 0.00 0.00 4.75
2868 3685 5.988561 TGTTTGTTTCCATGAACTTATTGGC 59.011 36.000 0.00 0.00 0.00 4.52
2869 3686 6.423604 GGTGTTTGTTTCCATGAACTTATTGG 59.576 38.462 0.00 0.00 0.00 3.16
2870 3687 6.423604 GGGTGTTTGTTTCCATGAACTTATTG 59.576 38.462 0.00 0.00 0.00 1.90
2871 3688 6.326323 AGGGTGTTTGTTTCCATGAACTTATT 59.674 34.615 0.00 0.00 0.00 1.40
2872 3689 5.838521 AGGGTGTTTGTTTCCATGAACTTAT 59.161 36.000 0.00 0.00 0.00 1.73
2873 3690 5.205056 AGGGTGTTTGTTTCCATGAACTTA 58.795 37.500 0.00 0.00 0.00 2.24
2874 3691 4.030216 AGGGTGTTTGTTTCCATGAACTT 58.970 39.130 0.00 0.00 0.00 2.66
2875 3692 3.636764 GAGGGTGTTTGTTTCCATGAACT 59.363 43.478 0.00 0.00 0.00 3.01
2876 3693 3.636764 AGAGGGTGTTTGTTTCCATGAAC 59.363 43.478 0.00 0.00 0.00 3.18
2877 3694 3.909732 AGAGGGTGTTTGTTTCCATGAA 58.090 40.909 0.00 0.00 0.00 2.57
2878 3695 3.593442 AGAGGGTGTTTGTTTCCATGA 57.407 42.857 0.00 0.00 0.00 3.07
2879 3696 5.048713 GTCTTAGAGGGTGTTTGTTTCCATG 60.049 44.000 0.00 0.00 0.00 3.66
2880 3697 5.070685 GTCTTAGAGGGTGTTTGTTTCCAT 58.929 41.667 0.00 0.00 0.00 3.41
2881 3698 4.165372 AGTCTTAGAGGGTGTTTGTTTCCA 59.835 41.667 0.00 0.00 0.00 3.53
2882 3699 4.715713 AGTCTTAGAGGGTGTTTGTTTCC 58.284 43.478 0.00 0.00 0.00 3.13
2883 3700 7.255035 GGTTAAGTCTTAGAGGGTGTTTGTTTC 60.255 40.741 0.00 0.00 0.00 2.78
2884 3701 6.544931 GGTTAAGTCTTAGAGGGTGTTTGTTT 59.455 38.462 0.00 0.00 0.00 2.83
2885 3702 6.060136 GGTTAAGTCTTAGAGGGTGTTTGTT 58.940 40.000 0.00 0.00 0.00 2.83
2886 3703 5.131475 TGGTTAAGTCTTAGAGGGTGTTTGT 59.869 40.000 0.00 0.00 0.00 2.83
2887 3704 5.617252 TGGTTAAGTCTTAGAGGGTGTTTG 58.383 41.667 0.00 0.00 0.00 2.93
2888 3705 5.899631 TGGTTAAGTCTTAGAGGGTGTTT 57.100 39.130 0.00 0.00 0.00 2.83
2889 3706 5.368816 ACTTGGTTAAGTCTTAGAGGGTGTT 59.631 40.000 0.00 0.00 43.53 3.32
2890 3707 4.906060 ACTTGGTTAAGTCTTAGAGGGTGT 59.094 41.667 0.00 0.00 43.53 4.16
2891 3708 5.485209 ACTTGGTTAAGTCTTAGAGGGTG 57.515 43.478 0.00 0.00 43.53 4.61
2902 3719 5.186021 ATCATCGACTGAGACTTGGTTAAGT 59.814 40.000 0.00 0.00 41.82 2.24
2903 3720 5.060662 TCATCGACTGAGACTTGGTTAAG 57.939 43.478 0.00 0.00 39.86 1.85
2904 3721 5.661056 ATCATCGACTGAGACTTGGTTAA 57.339 39.130 0.00 0.00 37.28 2.01
2905 3722 6.961360 ATATCATCGACTGAGACTTGGTTA 57.039 37.500 0.00 0.00 37.28 2.85
2906 3723 5.860941 ATATCATCGACTGAGACTTGGTT 57.139 39.130 0.00 0.00 37.28 3.67
2907 3724 6.151985 GGATATATCATCGACTGAGACTTGGT 59.848 42.308 14.60 0.00 37.28 3.67
2908 3725 6.559810 GGATATATCATCGACTGAGACTTGG 58.440 44.000 14.60 0.00 37.28 3.61
2909 3726 6.254480 CGGATATATCATCGACTGAGACTTG 58.746 44.000 14.60 0.00 37.28 3.16
2910 3727 5.163703 GCGGATATATCATCGACTGAGACTT 60.164 44.000 14.60 0.00 37.28 3.01
2911 3728 4.334203 GCGGATATATCATCGACTGAGACT 59.666 45.833 14.60 0.00 37.28 3.24
2912 3729 4.095036 TGCGGATATATCATCGACTGAGAC 59.905 45.833 14.60 0.00 37.28 3.36
2913 3730 4.261801 TGCGGATATATCATCGACTGAGA 58.738 43.478 14.60 0.00 37.28 3.27
2914 3731 4.497173 CCTGCGGATATATCATCGACTGAG 60.497 50.000 14.60 4.79 37.28 3.35
2915 3732 3.378427 CCTGCGGATATATCATCGACTGA 59.622 47.826 14.60 0.00 38.53 3.41
2916 3733 3.378427 TCCTGCGGATATATCATCGACTG 59.622 47.826 14.60 9.21 0.00 3.51
2917 3734 3.621558 TCCTGCGGATATATCATCGACT 58.378 45.455 14.60 0.00 0.00 4.18
2931 3748 4.452455 GGATCTACATGTAAAATCCTGCGG 59.548 45.833 25.91 7.19 34.35 5.69
2991 3811 8.167556 ACTTAACGAAGCCTAAGTCAATTGACA 61.168 37.037 33.92 17.69 40.73 3.58
2992 3812 6.147328 ACTTAACGAAGCCTAAGTCAATTGAC 59.853 38.462 27.69 27.69 35.41 3.18
2993 3813 6.228258 ACTTAACGAAGCCTAAGTCAATTGA 58.772 36.000 3.38 3.38 35.41 2.57
2994 3814 6.481954 ACTTAACGAAGCCTAAGTCAATTG 57.518 37.500 0.00 0.00 35.41 2.32
2995 3815 6.723131 GACTTAACGAAGCCTAAGTCAATT 57.277 37.500 14.20 0.00 46.60 2.32
2998 3818 9.381078 GACTGAGACTTAACGAAGCCTAAGTCA 62.381 44.444 18.97 4.72 46.09 3.41
2999 3819 7.111409 GACTGAGACTTAACGAAGCCTAAGTC 61.111 46.154 12.08 12.08 42.90 3.01
3000 3820 4.523558 ACTGAGACTTAACGAAGCCTAAGT 59.476 41.667 0.00 0.00 40.62 2.24
3001 3821 5.061920 ACTGAGACTTAACGAAGCCTAAG 57.938 43.478 0.00 0.00 35.97 2.18
3002 3822 4.379186 CGACTGAGACTTAACGAAGCCTAA 60.379 45.833 0.00 0.00 35.97 2.69
3003 3823 3.126514 CGACTGAGACTTAACGAAGCCTA 59.873 47.826 0.00 0.00 35.97 3.93
3004 3824 2.095161 CGACTGAGACTTAACGAAGCCT 60.095 50.000 0.00 0.00 35.97 4.58
3005 3825 2.095364 TCGACTGAGACTTAACGAAGCC 60.095 50.000 0.00 0.00 35.97 4.35
3006 3826 2.909863 GTCGACTGAGACTTAACGAAGC 59.090 50.000 8.70 0.00 38.09 3.86
3017 3837 3.676093 ACTATGTCACAGTCGACTGAGA 58.324 45.455 43.55 38.11 46.59 3.27
3018 3838 3.437049 TGACTATGTCACAGTCGACTGAG 59.563 47.826 43.55 36.69 46.36 3.35
3019 3839 3.408634 TGACTATGTCACAGTCGACTGA 58.591 45.455 43.55 26.39 46.36 3.41
3071 3891 9.787435 ACTAGTTGTGATAAGTAATCCAAACAA 57.213 29.630 0.00 0.00 34.02 2.83
3089 3909 9.355215 CGTGAGAAACATCTTTATACTAGTTGT 57.645 33.333 0.00 0.00 0.00 3.32
3090 3910 8.321716 GCGTGAGAAACATCTTTATACTAGTTG 58.678 37.037 0.00 0.00 0.00 3.16
3091 3911 7.491696 GGCGTGAGAAACATCTTTATACTAGTT 59.508 37.037 0.00 0.00 0.00 2.24
3092 3912 6.979238 GGCGTGAGAAACATCTTTATACTAGT 59.021 38.462 0.00 0.00 0.00 2.57
3093 3913 6.142480 CGGCGTGAGAAACATCTTTATACTAG 59.858 42.308 0.00 0.00 0.00 2.57
3094 3914 5.975344 CGGCGTGAGAAACATCTTTATACTA 59.025 40.000 0.00 0.00 0.00 1.82
3095 3915 4.804139 CGGCGTGAGAAACATCTTTATACT 59.196 41.667 0.00 0.00 0.00 2.12
3096 3916 4.565564 ACGGCGTGAGAAACATCTTTATAC 59.434 41.667 13.76 0.00 0.00 1.47
3097 3917 4.751060 ACGGCGTGAGAAACATCTTTATA 58.249 39.130 13.76 0.00 0.00 0.98
3098 3918 3.596214 ACGGCGTGAGAAACATCTTTAT 58.404 40.909 13.76 0.00 0.00 1.40
3099 3919 3.034721 ACGGCGTGAGAAACATCTTTA 57.965 42.857 13.76 0.00 0.00 1.85
3100 3920 1.878953 ACGGCGTGAGAAACATCTTT 58.121 45.000 13.76 0.00 0.00 2.52
3101 3921 2.736144 TACGGCGTGAGAAACATCTT 57.264 45.000 24.86 0.00 0.00 2.40
3102 3922 2.540515 CATACGGCGTGAGAAACATCT 58.459 47.619 24.86 0.00 0.00 2.90
3103 3923 1.004927 GCATACGGCGTGAGAAACATC 60.005 52.381 24.86 0.00 0.00 3.06
3104 3924 1.006832 GCATACGGCGTGAGAAACAT 58.993 50.000 24.86 2.57 0.00 2.71
3105 3925 2.451693 GCATACGGCGTGAGAAACA 58.548 52.632 24.86 0.00 0.00 2.83
3138 3958 5.106830 GGCACTAATAAGCAGTTAACGTGTT 60.107 40.000 0.00 0.00 0.00 3.32
3148 3968 1.202580 AGCGGAGGCACTAATAAGCAG 60.203 52.381 0.00 0.00 41.55 4.24
3158 3978 0.955919 ACTTGCTAAAGCGGAGGCAC 60.956 55.000 9.18 0.00 45.83 5.01
3167 3987 9.620660 AATTCCGTACAATTTAACTTGCTAAAG 57.379 29.630 5.53 0.00 39.49 1.85
3187 4007 5.592054 TCTAGATGTGAGTTAGCAATTCCG 58.408 41.667 0.00 0.00 0.00 4.30
3215 4035 8.692710 TGGACTTAGATGTGATCGTAACTAAAT 58.307 33.333 0.00 0.00 0.00 1.40
3226 4046 4.906618 ACGGTTTTGGACTTAGATGTGAT 58.093 39.130 0.00 0.00 0.00 3.06
3239 4059 2.190841 AACCAGCGGACGGTTTTGG 61.191 57.895 1.50 0.00 44.46 3.28
3275 4100 1.815421 GGGCGAGCGTGACATTGAT 60.815 57.895 0.00 0.00 0.00 2.57
3278 4103 2.434884 CTGGGCGAGCGTGACATT 60.435 61.111 0.00 0.00 0.00 2.71
3409 4234 3.254024 AAAGCAGATCGGCCCACGT 62.254 57.895 14.56 0.00 44.69 4.49
3410 4235 2.436646 AAAGCAGATCGGCCCACG 60.437 61.111 14.56 0.00 46.11 4.94
3521 4346 4.313282 CGGACGTCAGGTAGATATAGACA 58.687 47.826 18.91 0.00 0.00 3.41
3525 4350 3.557898 GGACCGGACGTCAGGTAGATATA 60.558 52.174 35.39 0.00 44.40 0.86
3530 4355 2.758089 CGGACCGGACGTCAGGTAG 61.758 68.421 35.39 27.69 44.40 3.18
3535 4360 2.281692 TTCTCGGACCGGACGTCA 60.282 61.111 18.91 0.59 43.95 4.35
3537 4362 3.368571 GGTTCTCGGACCGGACGT 61.369 66.667 15.25 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.