Multiple sequence alignment - TraesCS2B01G509400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G509400 chr2B 100.000 2663 0 0 1 2663 705356430 705359092 0.000000e+00 4918.0
1 TraesCS2B01G509400 chr2B 93.176 762 43 5 931 1684 705348927 705348167 0.000000e+00 1110.0
2 TraesCS2B01G509400 chr2B 95.378 238 11 0 2402 2639 5530039 5530276 1.930000e-101 379.0
3 TraesCS2B01G509400 chr2B 92.562 121 9 0 2053 2173 705358433 705358553 9.800000e-40 174.0
4 TraesCS2B01G509400 chr2B 92.562 121 9 0 2004 2124 705358482 705358602 9.800000e-40 174.0
5 TraesCS2B01G509400 chr2B 93.617 94 6 0 146 239 705356531 705356624 9.940000e-30 141.0
6 TraesCS2B01G509400 chr2B 93.617 94 6 0 102 195 705356575 705356668 9.940000e-30 141.0
7 TraesCS2B01G509400 chr2B 90.476 63 6 0 2102 2164 705358433 705358495 1.700000e-12 84.2
8 TraesCS2B01G509400 chr2B 90.476 63 6 0 2004 2066 705358531 705358593 1.700000e-12 84.2
9 TraesCS2B01G509400 chr2A 92.114 913 50 16 818 1716 718975676 718976580 0.000000e+00 1267.0
10 TraesCS2B01G509400 chr2A 89.211 862 62 15 843 1682 718965829 718964977 0.000000e+00 1048.0
11 TraesCS2B01G509400 chr2A 84.760 584 64 9 192 769 718974792 718975356 1.790000e-156 562.0
12 TraesCS2B01G509400 chr2D 95.767 756 30 2 963 1716 584867274 584868029 0.000000e+00 1218.0
13 TraesCS2B01G509400 chr2D 92.537 737 46 4 956 1684 584858617 584857882 0.000000e+00 1048.0
14 TraesCS2B01G509400 chr2D 85.084 952 74 26 1 924 584866281 584867192 0.000000e+00 909.0
15 TraesCS2B01G509400 chr2D 85.558 547 71 7 2099 2640 577624402 577624945 1.380000e-157 566.0
16 TraesCS2B01G509400 chr2D 83.382 343 36 5 1719 2060 644585151 644585473 5.570000e-77 298.0
17 TraesCS2B01G509400 chr2D 89.121 239 23 3 1719 1956 587588957 587589193 7.210000e-76 294.0
18 TraesCS2B01G509400 chr2D 87.225 227 22 4 1719 1938 577622625 577622851 4.400000e-63 252.0
19 TraesCS2B01G509400 chr2D 88.587 184 21 0 2457 2640 70393168 70392985 9.590000e-55 224.0
20 TraesCS2B01G509400 chr2D 86.755 151 20 0 1925 2075 577624327 577624477 4.560000e-38 169.0
21 TraesCS2B01G509400 chr2D 94.203 69 3 1 102 169 584866426 584866494 1.300000e-18 104.0
22 TraesCS2B01G509400 chr2D 81.982 111 11 5 841 949 584858764 584858661 4.720000e-13 86.1
23 TraesCS2B01G509400 chr2D 85.526 76 10 1 2050 2124 577624402 577624477 7.900000e-11 78.7
24 TraesCS2B01G509400 chr3D 88.726 683 73 4 986 1666 41746656 41745976 0.000000e+00 832.0
25 TraesCS2B01G509400 chr3D 87.658 316 36 3 177 490 488878983 488879297 5.420000e-97 364.0
26 TraesCS2B01G509400 chr3D 83.422 374 44 9 180 541 488881677 488882044 5.490000e-87 331.0
27 TraesCS2B01G509400 chr3A 88.262 673 71 7 998 1666 53257335 53256667 0.000000e+00 798.0
28 TraesCS2B01G509400 chr3A 84.182 373 45 6 180 541 632367788 632367419 1.520000e-92 350.0
29 TraesCS2B01G509400 chr3B 87.286 700 82 4 969 1666 65269476 65268782 0.000000e+00 793.0
30 TraesCS2B01G509400 chr3B 86.170 376 38 9 177 541 651609672 651609300 6.910000e-106 394.0
31 TraesCS2B01G509400 chrUn 88.298 564 48 9 1135 1683 49875911 49875351 0.000000e+00 660.0
32 TraesCS2B01G509400 chrUn 82.865 356 41 11 1725 2074 2784328 2784669 4.310000e-78 302.0
33 TraesCS2B01G509400 chrUn 82.865 356 41 11 1725 2074 215552413 215552072 4.310000e-78 302.0
34 TraesCS2B01G509400 chr1B 81.900 558 66 17 2109 2640 35961371 35960823 3.150000e-119 438.0
35 TraesCS2B01G509400 chr1B 82.865 356 41 11 1725 2074 36815945 36816286 4.310000e-78 302.0
36 TraesCS2B01G509400 chr1B 87.568 185 21 2 2457 2640 623845184 623845367 2.080000e-51 213.0
37 TraesCS2B01G509400 chr6A 82.927 410 51 13 1719 2116 383079733 383079331 4.220000e-93 351.0
38 TraesCS2B01G509400 chr6A 79.221 154 27 5 2457 2608 250714809 250714959 4.690000e-18 102.0
39 TraesCS2B01G509400 chr7D 90.217 184 16 2 2457 2639 207208596 207208414 3.430000e-59 239.0
40 TraesCS2B01G509400 chr7D 81.250 128 21 3 2513 2639 112065996 112065871 1.690000e-17 100.0
41 TraesCS2B01G509400 chr4D 89.247 186 20 0 2454 2639 20677159 20677344 1.590000e-57 233.0
42 TraesCS2B01G509400 chr5B 93.333 135 8 1 1719 1852 645540878 645540744 5.810000e-47 198.0
43 TraesCS2B01G509400 chr5B 92.424 132 9 1 1719 1849 645540076 645540207 1.260000e-43 187.0
44 TraesCS2B01G509400 chr4B 88.333 120 14 0 2520 2639 580399332 580399213 7.680000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G509400 chr2B 705356430 705359092 2662 False 816.628571 4918 93.330000 1 2663 7 chr2B.!!$F2 2662
1 TraesCS2B01G509400 chr2B 705348167 705348927 760 True 1110.000000 1110 93.176000 931 1684 1 chr2B.!!$R1 753
2 TraesCS2B01G509400 chr2A 718964977 718965829 852 True 1048.000000 1048 89.211000 843 1682 1 chr2A.!!$R1 839
3 TraesCS2B01G509400 chr2A 718974792 718976580 1788 False 914.500000 1267 88.437000 192 1716 2 chr2A.!!$F1 1524
4 TraesCS2B01G509400 chr2D 584866281 584868029 1748 False 743.666667 1218 91.684667 1 1716 3 chr2D.!!$F4 1715
5 TraesCS2B01G509400 chr2D 584857882 584858764 882 True 567.050000 1048 87.259500 841 1684 2 chr2D.!!$R2 843
6 TraesCS2B01G509400 chr2D 577622625 577624945 2320 False 266.425000 566 86.266000 1719 2640 4 chr2D.!!$F3 921
7 TraesCS2B01G509400 chr3D 41745976 41746656 680 True 832.000000 832 88.726000 986 1666 1 chr3D.!!$R1 680
8 TraesCS2B01G509400 chr3D 488878983 488882044 3061 False 347.500000 364 85.540000 177 541 2 chr3D.!!$F1 364
9 TraesCS2B01G509400 chr3A 53256667 53257335 668 True 798.000000 798 88.262000 998 1666 1 chr3A.!!$R1 668
10 TraesCS2B01G509400 chr3B 65268782 65269476 694 True 793.000000 793 87.286000 969 1666 1 chr3B.!!$R1 697
11 TraesCS2B01G509400 chrUn 49875351 49875911 560 True 660.000000 660 88.298000 1135 1683 1 chrUn.!!$R1 548
12 TraesCS2B01G509400 chr1B 35960823 35961371 548 True 438.000000 438 81.900000 2109 2640 1 chr1B.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 4012 0.038892 GTTCCTGCGTTCGTACTCCA 60.039 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 5019 0.036388 GCAAGTTGGGTCGAGATCCA 60.036 55.0 4.75 0.05 40.49 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.570320 TCCACAAGAGGGAAAAAGGAATAG 58.430 41.667 0.00 0.00 0.00 1.73
101 102 9.660180 AACACAAGAGAATTTAGATAAGTCTCC 57.340 33.333 10.32 0.00 35.87 3.71
102 103 8.816894 ACACAAGAGAATTTAGATAAGTCTCCA 58.183 33.333 10.32 0.00 35.87 3.86
103 104 9.829507 CACAAGAGAATTTAGATAAGTCTCCAT 57.170 33.333 10.32 0.07 35.87 3.41
147 148 5.662211 GGTAACAAGTACACAAACGTCAT 57.338 39.130 0.00 0.00 34.01 3.06
148 149 6.768029 GGTAACAAGTACACAAACGTCATA 57.232 37.500 0.00 0.00 34.01 2.15
149 150 7.176285 GGTAACAAGTACACAAACGTCATAA 57.824 36.000 0.00 0.00 34.01 1.90
150 151 7.799784 GGTAACAAGTACACAAACGTCATAAT 58.200 34.615 0.00 0.00 34.01 1.28
151 152 8.924691 GGTAACAAGTACACAAACGTCATAATA 58.075 33.333 0.00 0.00 34.01 0.98
152 153 9.947897 GTAACAAGTACACAAACGTCATAATAG 57.052 33.333 0.00 0.00 32.45 1.73
153 154 7.057149 ACAAGTACACAAACGTCATAATAGC 57.943 36.000 0.00 0.00 0.00 2.97
154 155 6.872020 ACAAGTACACAAACGTCATAATAGCT 59.128 34.615 0.00 0.00 0.00 3.32
155 156 7.386848 ACAAGTACACAAACGTCATAATAGCTT 59.613 33.333 0.00 0.00 0.00 3.74
156 157 8.865978 CAAGTACACAAACGTCATAATAGCTTA 58.134 33.333 0.00 0.00 0.00 3.09
157 158 8.991243 AGTACACAAACGTCATAATAGCTTAA 57.009 30.769 0.00 0.00 0.00 1.85
158 159 9.426837 AGTACACAAACGTCATAATAGCTTAAA 57.573 29.630 0.00 0.00 0.00 1.52
161 162 8.726988 ACACAAACGTCATAATAGCTTAAATGT 58.273 29.630 0.00 0.00 0.00 2.71
162 163 9.554724 CACAAACGTCATAATAGCTTAAATGTT 57.445 29.630 0.00 0.00 0.00 2.71
199 200 6.887376 AGTACACAAACGTCATAATAGCTG 57.113 37.500 0.00 0.00 0.00 4.24
244 322 6.446318 AGTTCACAAACAACATAATCGCAAT 58.554 32.000 0.00 0.00 37.88 3.56
316 394 2.235898 AGGGACATCTTCACTCTTCAGC 59.764 50.000 0.00 0.00 28.25 4.26
325 3092 4.100963 TCTTCACTCTTCAGCCTTTACACA 59.899 41.667 0.00 0.00 0.00 3.72
326 3093 4.415881 TCACTCTTCAGCCTTTACACAA 57.584 40.909 0.00 0.00 0.00 3.33
348 3115 7.004086 ACAACATTTCTTCATCCTCCTACAAA 58.996 34.615 0.00 0.00 0.00 2.83
375 3142 7.839907 TGGCAGCAATGAAAGAATTAGTAAAT 58.160 30.769 0.00 0.00 0.00 1.40
427 3194 8.036575 AGTTTACAGCAATGCAACATATTCAAT 58.963 29.630 8.35 0.00 0.00 2.57
460 3227 1.571460 GCAGTGCCTTCACAAGACG 59.429 57.895 2.85 0.00 45.49 4.18
470 3237 4.111198 CCTTCACAAGACGATCAGAGATG 58.889 47.826 0.00 0.00 0.00 2.90
478 3245 5.042463 AGACGATCAGAGATGGAGAACTA 57.958 43.478 0.00 0.00 0.00 2.24
490 3265 6.201591 AGATGGAGAACTAAGGAAGACTGAT 58.798 40.000 0.00 0.00 0.00 2.90
496 3271 8.700973 GGAGAACTAAGGAAGACTGATATTTCT 58.299 37.037 0.00 0.00 0.00 2.52
503 3278 7.061566 AGGAAGACTGATATTTCTAAGGCTC 57.938 40.000 0.00 0.00 0.00 4.70
528 3304 5.007626 GCTGATGGCGAAAATTATACAGTCA 59.992 40.000 0.00 0.00 0.00 3.41
537 3313 9.512287 GCGAAAATTATACAGTCACAATATACG 57.488 33.333 0.00 0.00 0.00 3.06
543 3319 0.596600 AGTCACAATATACGCCCGCG 60.597 55.000 7.69 7.69 46.03 6.46
549 3326 3.800685 ATATACGCCCGCGCTGCAA 62.801 57.895 17.25 6.47 44.19 4.08
642 3419 3.010226 CGAGGGAGGAGGGGGAAGA 62.010 68.421 0.00 0.00 0.00 2.87
656 3433 1.574263 GGAAGAGGAAGGTGGTAGCT 58.426 55.000 0.00 0.00 0.00 3.32
724 3503 2.359850 GGCAACGTCAGGGCATGA 60.360 61.111 0.00 0.00 34.79 3.07
776 3812 3.895806 GCGCACAATTATGCTCGAA 57.104 47.368 7.19 0.00 43.80 3.71
785 3821 5.349817 CACAATTATGCTCGAAGACTTGACT 59.650 40.000 0.00 0.00 0.00 3.41
786 3822 5.349817 ACAATTATGCTCGAAGACTTGACTG 59.650 40.000 0.00 0.00 0.00 3.51
804 3841 2.158813 ACTGGTTGACCGTTGACTGAAT 60.159 45.455 0.00 0.00 39.43 2.57
808 3845 5.067273 TGGTTGACCGTTGACTGAATATTT 58.933 37.500 0.00 0.00 39.43 1.40
810 3847 5.180492 GGTTGACCGTTGACTGAATATTTGA 59.820 40.000 0.00 0.00 0.00 2.69
813 3850 4.647611 ACCGTTGACTGAATATTTGACCA 58.352 39.130 0.00 0.00 0.00 4.02
814 3851 4.695455 ACCGTTGACTGAATATTTGACCAG 59.305 41.667 0.00 0.00 0.00 4.00
815 3852 4.695455 CCGTTGACTGAATATTTGACCAGT 59.305 41.667 7.12 7.12 41.96 4.00
833 3894 0.391130 GTATGCCGTTGCTGTCAGGA 60.391 55.000 1.14 0.00 38.71 3.86
864 3927 9.825972 ACGTTCATATCAAGTGAAAAATAAGTG 57.174 29.630 0.00 0.00 37.34 3.16
876 3939 1.318934 AATAAGTGCCCAATCCCCCT 58.681 50.000 0.00 0.00 0.00 4.79
877 3940 2.222461 ATAAGTGCCCAATCCCCCTA 57.778 50.000 0.00 0.00 0.00 3.53
878 3941 1.218844 TAAGTGCCCAATCCCCCTAC 58.781 55.000 0.00 0.00 0.00 3.18
879 3942 0.552615 AAGTGCCCAATCCCCCTACT 60.553 55.000 0.00 0.00 0.00 2.57
880 3943 0.988678 AGTGCCCAATCCCCCTACTC 60.989 60.000 0.00 0.00 0.00 2.59
881 3944 0.988678 GTGCCCAATCCCCCTACTCT 60.989 60.000 0.00 0.00 0.00 3.24
888 3951 0.323542 ATCCCCCTACTCTATCCGCG 60.324 60.000 0.00 0.00 0.00 6.46
924 3987 2.123683 TCCAAAAAGCCGCCACCA 60.124 55.556 0.00 0.00 0.00 4.17
926 3989 2.498056 CCAAAAAGCCGCCACCACT 61.498 57.895 0.00 0.00 0.00 4.00
927 3990 1.007387 CAAAAAGCCGCCACCACTC 60.007 57.895 0.00 0.00 0.00 3.51
928 3991 2.200337 AAAAAGCCGCCACCACTCC 61.200 57.895 0.00 0.00 0.00 3.85
944 4007 2.203972 CTCCGGTTCCTGCGTTCGTA 62.204 60.000 0.00 0.00 0.00 3.43
949 4012 0.038892 GTTCCTGCGTTCGTACTCCA 60.039 55.000 0.00 0.00 0.00 3.86
950 4013 0.038892 TTCCTGCGTTCGTACTCCAC 60.039 55.000 0.00 0.00 0.00 4.02
953 4016 0.456312 CTGCGTTCGTACTCCACTCC 60.456 60.000 0.00 0.00 0.00 3.85
954 4017 0.892358 TGCGTTCGTACTCCACTCCT 60.892 55.000 0.00 0.00 0.00 3.69
955 4018 0.456312 GCGTTCGTACTCCACTCCTG 60.456 60.000 0.00 0.00 0.00 3.86
959 4023 0.965866 TCGTACTCCACTCCTGCCAG 60.966 60.000 0.00 0.00 0.00 4.85
1063 4190 4.074526 GCTGCCTCTGCGTCTCCA 62.075 66.667 0.00 0.00 41.78 3.86
1284 4411 1.228124 CCGGAACAAGAACTGGGCA 60.228 57.895 0.00 0.00 0.00 5.36
1566 4707 0.178953 AGTGCAAGTTCCAGGCCAAT 60.179 50.000 5.01 0.00 0.00 3.16
1779 4920 1.299926 GGAACATCGACCCGGATCG 60.300 63.158 13.60 13.60 43.63 3.69
1806 4947 4.240049 GTCGACACAGGGAACGAC 57.760 61.111 11.55 10.24 45.51 4.34
1838 4980 3.116531 GGAACGCGACCCGGAAAG 61.117 66.667 15.93 0.00 42.52 2.62
1847 4989 2.746277 CCCGGAAAGGCAGGTTCG 60.746 66.667 0.73 0.00 39.21 3.95
1862 5004 1.069090 TTCGCAGCTCCGTTTCAGT 59.931 52.632 0.00 0.00 0.00 3.41
1863 5005 1.221466 TTCGCAGCTCCGTTTCAGTG 61.221 55.000 0.00 0.00 0.00 3.66
1865 5007 1.016130 CGCAGCTCCGTTTCAGTGAT 61.016 55.000 0.00 0.00 0.00 3.06
1867 5009 0.994995 CAGCTCCGTTTCAGTGATCG 59.005 55.000 10.10 10.10 0.00 3.69
1875 5017 3.124466 CCGTTTCAGTGATCGCAAATACA 59.876 43.478 9.33 0.00 0.00 2.29
1876 5018 4.081761 CGTTTCAGTGATCGCAAATACAC 58.918 43.478 9.33 0.00 0.00 2.90
1877 5019 4.143115 CGTTTCAGTGATCGCAAATACACT 60.143 41.667 9.33 0.00 43.05 3.55
1880 5022 3.610040 AGTGATCGCAAATACACTGGA 57.390 42.857 9.33 0.00 41.16 3.86
1895 5043 1.276421 ACTGGATCTCGACCCAACTTG 59.724 52.381 0.00 0.00 31.11 3.16
1900 5048 0.400213 TCTCGACCCAACTTGCCAAT 59.600 50.000 0.00 0.00 0.00 3.16
1904 5052 1.335872 CGACCCAACTTGCCAATGAAC 60.336 52.381 0.00 0.00 0.00 3.18
1907 5055 0.038343 CCAACTTGCCAATGAACGGG 60.038 55.000 0.00 0.00 0.00 5.28
1913 5061 2.354729 CCAATGAACGGGAGGCCA 59.645 61.111 5.01 0.00 0.00 5.36
1915 5063 0.897863 CCAATGAACGGGAGGCCAAA 60.898 55.000 5.01 0.00 0.00 3.28
1916 5064 1.185315 CAATGAACGGGAGGCCAAAT 58.815 50.000 5.01 0.00 0.00 2.32
1938 5086 6.582677 ATGGATAGAATCGAGACTTACCTG 57.417 41.667 0.00 0.00 0.00 4.00
1939 5087 5.691896 TGGATAGAATCGAGACTTACCTGA 58.308 41.667 0.00 0.00 0.00 3.86
1949 6586 2.789409 ACTTACCTGAAGTCCATGGC 57.211 50.000 6.96 2.00 45.81 4.40
1954 6591 1.064906 ACCTGAAGTCCATGGCATGAG 60.065 52.381 28.43 17.71 0.00 2.90
1982 6619 1.509162 GTCGACCAAAACGATGCGC 60.509 57.895 3.51 0.00 41.62 6.09
2001 6638 2.903357 CCGGAGGCTAGTGTGCAT 59.097 61.111 0.00 0.00 46.14 3.96
2007 6644 1.741401 GGCTAGTGTGCATGTGCGA 60.741 57.895 0.00 0.00 45.83 5.10
2011 6648 1.896339 TAGTGTGCATGTGCGAACGC 61.896 55.000 12.33 12.33 45.83 4.84
2097 6734 4.961511 GGCTGGTGTCGACGTGCA 62.962 66.667 11.62 0.00 0.00 4.57
2098 6735 3.406361 GCTGGTGTCGACGTGCAG 61.406 66.667 11.62 5.63 0.00 4.41
2099 6736 2.335011 CTGGTGTCGACGTGCAGA 59.665 61.111 11.62 0.00 0.00 4.26
2100 6737 2.016704 CTGGTGTCGACGTGCAGAC 61.017 63.158 11.62 0.00 37.85 3.51
2101 6738 2.335369 GGTGTCGACGTGCAGACT 59.665 61.111 11.62 0.00 38.16 3.24
2102 6739 2.016704 GGTGTCGACGTGCAGACTG 61.017 63.158 11.62 0.00 38.16 3.51
2103 6740 2.354656 TGTCGACGTGCAGACTGC 60.355 61.111 20.86 20.86 45.29 4.40
2146 6786 4.961511 GGCTGGTGTCGACGTGCA 62.962 66.667 11.62 0.00 0.00 4.57
2194 6834 2.105128 GCGGACGCTGTGCTAGAT 59.895 61.111 9.76 0.00 38.26 1.98
2234 6874 2.047274 CCGTGGACCAGCGAATGT 60.047 61.111 15.29 0.00 0.00 2.71
2271 6911 1.640149 TGCCCATCCTCTTGATTGGAA 59.360 47.619 0.00 0.00 38.32 3.53
2292 6932 0.182537 TTGGGAATCATACGGGGCAG 59.817 55.000 0.00 0.00 0.00 4.85
2296 6936 2.489073 GGGAATCATACGGGGCAGATTT 60.489 50.000 0.00 0.00 31.35 2.17
2297 6937 2.814336 GGAATCATACGGGGCAGATTTC 59.186 50.000 0.00 0.00 31.35 2.17
2298 6938 3.476552 GAATCATACGGGGCAGATTTCA 58.523 45.455 0.00 0.00 31.35 2.69
2332 6972 4.998788 ACTTTCTGCTGTCAAAACTTTCC 58.001 39.130 0.00 0.00 0.00 3.13
2344 6984 3.775661 AAACTTTCCGCGGGATATTTG 57.224 42.857 27.83 11.10 0.00 2.32
2349 6989 0.179032 TCCGCGGGATATTTGCACAT 60.179 50.000 27.83 0.00 0.00 3.21
2357 6997 4.141959 CGGGATATTTGCACATTTTCCCTT 60.142 41.667 21.90 0.00 39.36 3.95
2362 7002 2.978156 TGCACATTTTCCCTTCCTCT 57.022 45.000 0.00 0.00 0.00 3.69
2455 7113 5.187576 ACATGGATAATTTGACAAGGGTTGG 59.812 40.000 0.00 0.00 34.12 3.77
2490 7148 1.343142 CATATCGTTCCCGGGTCATCA 59.657 52.381 22.86 0.00 33.95 3.07
2502 7160 3.957497 CCGGGTCATCATTCCCAAATTAA 59.043 43.478 0.00 0.00 43.57 1.40
2518 7176 5.719173 CAAATTAATTGGGTCACGTTCCAT 58.281 37.500 0.39 0.00 35.27 3.41
2519 7177 5.576447 AATTAATTGGGTCACGTTCCATC 57.424 39.130 0.00 0.00 32.48 3.51
2533 7191 3.304458 CGTTCCATCTATCGATCGGTTCA 60.304 47.826 16.41 0.00 0.00 3.18
2555 7214 4.881850 CACTTGAAAGATGTATACCCCCAC 59.118 45.833 0.00 0.00 0.00 4.61
2562 7221 0.043032 TGTATACCCCCACCGTTCCT 59.957 55.000 0.00 0.00 0.00 3.36
2565 7224 1.206878 ATACCCCCACCGTTCCTTAC 58.793 55.000 0.00 0.00 0.00 2.34
2640 7312 1.474330 GGGAACTTGGCAACTATGGG 58.526 55.000 0.00 0.00 37.61 4.00
2641 7313 1.005450 GGGAACTTGGCAACTATGGGA 59.995 52.381 0.00 0.00 37.61 4.37
2642 7314 2.092323 GGAACTTGGCAACTATGGGAC 58.908 52.381 0.00 0.00 37.61 4.46
2643 7315 2.092323 GAACTTGGCAACTATGGGACC 58.908 52.381 0.00 0.00 37.61 4.46
2644 7316 1.072266 ACTTGGCAACTATGGGACCA 58.928 50.000 0.00 0.00 37.61 4.02
2645 7317 1.427368 ACTTGGCAACTATGGGACCAA 59.573 47.619 0.00 0.00 38.04 3.67
2646 7318 1.818674 CTTGGCAACTATGGGACCAAC 59.181 52.381 0.00 0.00 35.53 3.77
2647 7319 1.072266 TGGCAACTATGGGACCAACT 58.928 50.000 0.00 0.00 37.61 3.16
2648 7320 1.271871 TGGCAACTATGGGACCAACTG 60.272 52.381 0.00 0.00 37.61 3.16
2649 7321 0.811281 GCAACTATGGGACCAACTGC 59.189 55.000 0.00 0.00 0.00 4.40
2650 7322 1.886222 GCAACTATGGGACCAACTGCA 60.886 52.381 0.00 0.00 0.00 4.41
2651 7323 2.086869 CAACTATGGGACCAACTGCAG 58.913 52.381 13.48 13.48 0.00 4.41
2652 7324 0.620556 ACTATGGGACCAACTGCAGG 59.379 55.000 19.93 3.37 0.00 4.85
2653 7325 0.620556 CTATGGGACCAACTGCAGGT 59.379 55.000 19.93 9.19 43.46 4.00
2654 7326 1.837439 CTATGGGACCAACTGCAGGTA 59.163 52.381 19.93 0.00 40.09 3.08
2655 7327 0.620556 ATGGGACCAACTGCAGGTAG 59.379 55.000 19.93 7.27 40.09 3.18
2656 7328 0.472925 TGGGACCAACTGCAGGTAGA 60.473 55.000 19.93 0.00 40.09 2.59
2657 7329 0.912486 GGGACCAACTGCAGGTAGAT 59.088 55.000 19.93 0.00 40.09 1.98
2658 7330 1.282157 GGGACCAACTGCAGGTAGATT 59.718 52.381 19.93 0.00 40.09 2.40
2659 7331 2.359900 GGACCAACTGCAGGTAGATTG 58.640 52.381 19.93 12.53 40.09 2.67
2660 7332 2.290323 GGACCAACTGCAGGTAGATTGT 60.290 50.000 19.93 4.21 40.09 2.71
2661 7333 3.412386 GACCAACTGCAGGTAGATTGTT 58.588 45.455 19.93 0.76 40.09 2.83
2662 7334 3.412386 ACCAACTGCAGGTAGATTGTTC 58.588 45.455 19.93 0.00 37.67 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 9.563748 TGTTACCAAGTTAAACACTTAAGCTAT 57.436 29.630 1.29 0.00 44.60 2.97
106 107 8.961294 TGTTACCAAGTTAAACACTTAAGCTA 57.039 30.769 1.29 0.00 44.60 3.32
107 108 7.868906 TGTTACCAAGTTAAACACTTAAGCT 57.131 32.000 1.29 0.00 44.60 3.74
108 109 8.556517 CTTGTTACCAAGTTAAACACTTAAGC 57.443 34.615 1.29 0.00 44.60 3.09
123 124 4.934001 TGACGTTTGTGTACTTGTTACCAA 59.066 37.500 0.00 0.00 0.00 3.67
124 125 4.502016 TGACGTTTGTGTACTTGTTACCA 58.498 39.130 0.00 0.00 0.00 3.25
125 126 5.662211 ATGACGTTTGTGTACTTGTTACC 57.338 39.130 0.00 0.00 0.00 2.85
126 127 9.947897 CTATTATGACGTTTGTGTACTTGTTAC 57.052 33.333 0.00 0.00 0.00 2.50
127 128 8.649841 GCTATTATGACGTTTGTGTACTTGTTA 58.350 33.333 0.00 0.00 0.00 2.41
128 129 7.386848 AGCTATTATGACGTTTGTGTACTTGTT 59.613 33.333 0.00 0.00 0.00 2.83
129 130 6.872020 AGCTATTATGACGTTTGTGTACTTGT 59.128 34.615 0.00 0.00 0.00 3.16
130 131 7.290857 AGCTATTATGACGTTTGTGTACTTG 57.709 36.000 0.00 0.00 0.00 3.16
131 132 7.900782 AAGCTATTATGACGTTTGTGTACTT 57.099 32.000 0.00 0.00 0.00 2.24
132 133 8.991243 TTAAGCTATTATGACGTTTGTGTACT 57.009 30.769 0.00 0.00 0.00 2.73
135 136 8.726988 ACATTTAAGCTATTATGACGTTTGTGT 58.273 29.630 8.38 0.00 0.00 3.72
136 137 9.554724 AACATTTAAGCTATTATGACGTTTGTG 57.445 29.630 8.38 0.00 0.00 3.33
151 152 9.744468 CTTGTTACCAAGTTAAACATTTAAGCT 57.256 29.630 0.00 0.00 42.61 3.74
167 168 4.934001 TGACGTTTGTGTACTTGTTACCAA 59.066 37.500 0.00 0.00 0.00 3.67
168 169 4.502016 TGACGTTTGTGTACTTGTTACCA 58.498 39.130 0.00 0.00 0.00 3.25
169 170 5.662211 ATGACGTTTGTGTACTTGTTACC 57.338 39.130 0.00 0.00 0.00 2.85
170 171 9.947897 CTATTATGACGTTTGTGTACTTGTTAC 57.052 33.333 0.00 0.00 0.00 2.50
171 172 8.649841 GCTATTATGACGTTTGTGTACTTGTTA 58.350 33.333 0.00 0.00 0.00 2.41
172 173 7.386848 AGCTATTATGACGTTTGTGTACTTGTT 59.613 33.333 0.00 0.00 0.00 2.83
173 174 6.872020 AGCTATTATGACGTTTGTGTACTTGT 59.128 34.615 0.00 0.00 0.00 3.16
174 175 7.062956 TCAGCTATTATGACGTTTGTGTACTTG 59.937 37.037 0.00 0.00 0.00 3.16
175 176 7.094631 TCAGCTATTATGACGTTTGTGTACTT 58.905 34.615 0.00 0.00 0.00 2.24
178 179 7.062956 CACTTCAGCTATTATGACGTTTGTGTA 59.937 37.037 0.00 0.00 27.66 2.90
187 188 9.760660 CAAGTTAAACACTTCAGCTATTATGAC 57.239 33.333 0.00 0.00 44.60 3.06
237 315 2.234661 TGAACTGAGTGGAGATTGCGAT 59.765 45.455 0.00 0.00 0.00 4.58
244 322 6.419484 TCAGTAATTTGAACTGAGTGGAGA 57.581 37.500 5.60 0.00 46.38 3.71
316 394 7.219484 AGGATGAAGAAATGTTGTGTAAAGG 57.781 36.000 0.00 0.00 0.00 3.11
325 3092 8.526147 CATTTTGTAGGAGGATGAAGAAATGTT 58.474 33.333 0.00 0.00 31.09 2.71
326 3093 7.123247 CCATTTTGTAGGAGGATGAAGAAATGT 59.877 37.037 0.00 0.00 32.79 2.71
348 3115 6.290294 ACTAATTCTTTCATTGCTGCCATT 57.710 33.333 0.00 0.00 0.00 3.16
415 3182 9.027129 CCATAAGTGAAAGCATTGAATATGTTG 57.973 33.333 0.00 0.00 0.00 3.33
427 3194 2.161855 CACTGCCCATAAGTGAAAGCA 58.838 47.619 0.00 0.00 46.55 3.91
460 3227 6.549364 TCTTCCTTAGTTCTCCATCTCTGATC 59.451 42.308 0.00 0.00 0.00 2.92
470 3237 8.700973 AGAAATATCAGTCTTCCTTAGTTCTCC 58.299 37.037 0.00 0.00 0.00 3.71
478 3245 7.444703 AGCCTTAGAAATATCAGTCTTCCTT 57.555 36.000 0.00 0.00 0.00 3.36
490 3265 3.803715 GCCATCAGCGAGCCTTAGAAATA 60.804 47.826 0.00 0.00 0.00 1.40
523 3299 0.859232 GCGGGCGTATATTGTGACTG 59.141 55.000 0.00 0.00 0.00 3.51
528 3304 1.954146 CAGCGCGGGCGTATATTGT 60.954 57.895 19.46 0.00 46.35 2.71
537 3313 3.912820 TTTGAATTGCAGCGCGGGC 62.913 57.895 17.92 17.92 40.37 6.13
543 3319 4.171754 GAGGATTGTCTTTGAATTGCAGC 58.828 43.478 0.00 0.00 0.00 5.25
549 3326 2.421424 GCAGCGAGGATTGTCTTTGAAT 59.579 45.455 0.00 0.00 0.00 2.57
642 3419 1.616628 CCCCAGCTACCACCTTCCT 60.617 63.158 0.00 0.00 0.00 3.36
686 3465 4.760047 CAAGGCGACTCGGGGTGG 62.760 72.222 0.00 0.00 42.68 4.61
710 3489 1.003355 CACCTCATGCCCTGACGTT 60.003 57.895 0.00 0.00 0.00 3.99
713 3492 2.262774 CTCCCACCTCATGCCCTGAC 62.263 65.000 0.00 0.00 0.00 3.51
714 3493 1.997311 CTCCCACCTCATGCCCTGA 60.997 63.158 0.00 0.00 0.00 3.86
724 3503 2.361085 ACTAATCAACCCTCCCACCT 57.639 50.000 0.00 0.00 0.00 4.00
727 3506 6.854578 TCTTAAAAACTAATCAACCCTCCCA 58.145 36.000 0.00 0.00 0.00 4.37
776 3812 1.120530 ACGGTCAACCAGTCAAGTCT 58.879 50.000 0.00 0.00 35.14 3.24
785 3821 2.631160 ATTCAGTCAACGGTCAACCA 57.369 45.000 0.00 0.00 35.14 3.67
786 3822 5.180492 TCAAATATTCAGTCAACGGTCAACC 59.820 40.000 0.00 0.00 0.00 3.77
804 3841 2.680841 GCAACGGCATACTGGTCAAATA 59.319 45.455 0.00 0.00 40.72 1.40
808 3845 0.673333 CAGCAACGGCATACTGGTCA 60.673 55.000 0.00 0.00 44.61 4.02
810 3847 0.673644 GACAGCAACGGCATACTGGT 60.674 55.000 0.00 0.00 44.61 4.00
813 3850 0.391661 CCTGACAGCAACGGCATACT 60.392 55.000 0.00 0.00 44.61 2.12
814 3851 0.391130 TCCTGACAGCAACGGCATAC 60.391 55.000 0.00 0.00 44.61 2.39
815 3852 0.323302 TTCCTGACAGCAACGGCATA 59.677 50.000 0.00 0.00 44.61 3.14
833 3894 7.447374 TTTTCACTTGATATGAACGTGGATT 57.553 32.000 0.00 0.00 35.82 3.01
864 3927 1.909986 GATAGAGTAGGGGGATTGGGC 59.090 57.143 0.00 0.00 0.00 5.36
876 3939 1.215244 CAGTCGACGCGGATAGAGTA 58.785 55.000 12.47 0.00 31.42 2.59
877 3940 1.437772 CCAGTCGACGCGGATAGAGT 61.438 60.000 19.05 3.92 34.91 3.24
878 3941 1.280142 CCAGTCGACGCGGATAGAG 59.720 63.158 19.05 0.00 0.00 2.43
879 3942 0.179076 TACCAGTCGACGCGGATAGA 60.179 55.000 27.42 11.11 0.00 1.98
880 3943 0.235144 CTACCAGTCGACGCGGATAG 59.765 60.000 27.42 20.37 0.00 2.08
881 3944 1.779025 GCTACCAGTCGACGCGGATA 61.779 60.000 27.42 16.61 0.00 2.59
888 3951 2.597520 GAGTTTCAGCTACCAGTCGAC 58.402 52.381 7.70 7.70 0.00 4.20
924 3987 2.342648 GAACGCAGGAACCGGAGT 59.657 61.111 9.46 0.00 0.00 3.85
926 3989 2.267351 TACGAACGCAGGAACCGGA 61.267 57.895 9.46 0.00 0.00 5.14
927 3990 2.090524 GTACGAACGCAGGAACCGG 61.091 63.158 0.00 0.00 0.00 5.28
928 3991 1.069378 GAGTACGAACGCAGGAACCG 61.069 60.000 0.00 0.00 0.00 4.44
929 3992 0.735287 GGAGTACGAACGCAGGAACC 60.735 60.000 0.00 0.00 0.00 3.62
944 4007 1.915769 GGACTGGCAGGAGTGGAGT 60.916 63.158 20.34 0.00 0.00 3.85
949 4012 0.908198 GATCTTGGACTGGCAGGAGT 59.092 55.000 20.34 0.00 0.00 3.85
950 4013 0.179936 GGATCTTGGACTGGCAGGAG 59.820 60.000 20.34 10.81 0.00 3.69
953 4016 0.747283 GCTGGATCTTGGACTGGCAG 60.747 60.000 14.16 14.16 0.00 4.85
954 4017 1.203441 AGCTGGATCTTGGACTGGCA 61.203 55.000 0.00 0.00 0.00 4.92
955 4018 0.463474 GAGCTGGATCTTGGACTGGC 60.463 60.000 0.00 0.00 0.00 4.85
959 4023 3.465871 GATCTTGAGCTGGATCTTGGAC 58.534 50.000 0.00 0.00 36.41 4.02
1009 4136 4.899239 ATAGCAGCCGCACTCGCC 62.899 66.667 0.00 0.00 42.27 5.54
1124 4251 2.835895 GGAGGACGAGGAGGAGGC 60.836 72.222 0.00 0.00 0.00 4.70
1151 4278 2.125552 CGTGGCGGATGAAGCAGA 60.126 61.111 0.00 0.00 36.08 4.26
1284 4411 1.202758 TGGGTGTTCTTGACGCTCATT 60.203 47.619 0.00 0.00 44.09 2.57
1741 4882 4.157120 GTACAGGGGACGCGGCAT 62.157 66.667 17.00 0.00 0.00 4.40
1806 4947 3.975083 TTCCCGTCACCGAATCGCG 62.975 63.158 0.00 0.00 40.47 5.87
1833 4974 2.982744 GCTGCGAACCTGCCTTTCC 61.983 63.158 0.00 0.00 32.77 3.13
1835 4976 1.968540 GAGCTGCGAACCTGCCTTT 60.969 57.895 0.00 0.00 39.01 3.11
1840 4982 1.901650 GAAACGGAGCTGCGAACCTG 61.902 60.000 34.91 4.70 0.00 4.00
1847 4989 0.723981 GATCACTGAAACGGAGCTGC 59.276 55.000 0.00 0.00 0.00 5.25
1862 5004 4.371786 GAGATCCAGTGTATTTGCGATCA 58.628 43.478 0.00 0.00 30.89 2.92
1863 5005 3.426859 CGAGATCCAGTGTATTTGCGATC 59.573 47.826 0.00 0.00 0.00 3.69
1865 5007 2.425668 TCGAGATCCAGTGTATTTGCGA 59.574 45.455 0.00 0.00 0.00 5.10
1867 5009 2.866762 GGTCGAGATCCAGTGTATTTGC 59.133 50.000 0.00 0.00 0.00 3.68
1875 5017 1.276421 CAAGTTGGGTCGAGATCCAGT 59.724 52.381 5.15 0.00 43.55 4.00
1876 5018 2.009042 GCAAGTTGGGTCGAGATCCAG 61.009 57.143 5.15 0.00 43.55 3.86
1877 5019 0.036388 GCAAGTTGGGTCGAGATCCA 60.036 55.000 4.75 0.05 40.49 3.41
1878 5020 0.744771 GGCAAGTTGGGTCGAGATCC 60.745 60.000 4.75 0.00 0.00 3.36
1879 5021 0.036388 TGGCAAGTTGGGTCGAGATC 60.036 55.000 4.75 0.00 0.00 2.75
1880 5022 0.400213 TTGGCAAGTTGGGTCGAGAT 59.600 50.000 4.75 0.00 0.00 2.75
1895 5043 3.140814 GGCCTCCCGTTCATTGGC 61.141 66.667 0.00 0.00 42.56 4.52
1900 5048 1.304052 CCATTTGGCCTCCCGTTCA 60.304 57.895 3.32 0.00 0.00 3.18
1904 5052 0.764890 TCTATCCATTTGGCCTCCCG 59.235 55.000 3.32 0.00 34.44 5.14
1907 5055 3.999663 CTCGATTCTATCCATTTGGCCTC 59.000 47.826 3.32 0.00 34.44 4.70
1913 5061 7.287927 TCAGGTAAGTCTCGATTCTATCCATTT 59.712 37.037 0.00 0.00 0.00 2.32
1915 5063 6.307776 TCAGGTAAGTCTCGATTCTATCCAT 58.692 40.000 0.00 0.00 0.00 3.41
1916 5064 5.691896 TCAGGTAAGTCTCGATTCTATCCA 58.308 41.667 0.00 0.00 0.00 3.41
1954 6591 3.876589 TTGGTCGACAGCGGAAGGC 62.877 63.158 18.91 0.00 44.05 4.35
1963 6600 1.856688 CGCATCGTTTTGGTCGACA 59.143 52.632 18.91 0.27 40.07 4.35
1964 6601 1.509162 GCGCATCGTTTTGGTCGAC 60.509 57.895 7.13 7.13 40.07 4.20
1967 6604 2.869702 GCGCGCATCGTTTTGGTC 60.870 61.111 29.10 0.00 41.07 4.02
1990 6627 0.179215 GTTCGCACATGCACACTAGC 60.179 55.000 4.49 0.00 42.21 3.42
1993 6630 2.938253 CGTTCGCACATGCACACT 59.062 55.556 4.49 0.00 42.21 3.55
2080 6717 4.961511 TGCACGTCGACACCAGCC 62.962 66.667 17.16 0.00 0.00 4.85
2081 6718 3.406361 CTGCACGTCGACACCAGC 61.406 66.667 17.16 13.23 0.00 4.85
2082 6719 2.016704 GTCTGCACGTCGACACCAG 61.017 63.158 17.16 16.80 0.00 4.00
2083 6720 2.027024 GTCTGCACGTCGACACCA 59.973 61.111 17.16 7.91 0.00 4.17
2084 6721 2.016704 CAGTCTGCACGTCGACACC 61.017 63.158 17.16 3.24 32.68 4.16
2085 6722 2.649257 GCAGTCTGCACGTCGACAC 61.649 63.158 20.16 4.80 44.26 3.67
2086 6723 2.354656 GCAGTCTGCACGTCGACA 60.355 61.111 20.16 0.00 44.26 4.35
2087 6724 3.461982 CGCAGTCTGCACGTCGAC 61.462 66.667 24.13 5.18 45.36 4.20
2088 6725 4.700365 CCGCAGTCTGCACGTCGA 62.700 66.667 24.13 0.00 45.36 4.20
2089 6726 3.971453 ATCCGCAGTCTGCACGTCG 62.971 63.158 24.13 7.60 45.36 5.12
2090 6727 2.125912 ATCCGCAGTCTGCACGTC 60.126 61.111 24.13 0.00 45.36 4.34
2091 6728 2.433145 CATCCGCAGTCTGCACGT 60.433 61.111 24.13 6.34 45.36 4.49
2092 6729 3.857854 GCATCCGCAGTCTGCACG 61.858 66.667 24.13 13.37 45.36 5.34
2093 6730 3.857854 CGCATCCGCAGTCTGCAC 61.858 66.667 24.13 7.11 45.36 4.57
2096 6733 3.190849 CACCGCATCCGCAGTCTG 61.191 66.667 0.00 0.00 38.40 3.51
2126 6763 3.908081 ACGTCGACACCAGCCGTT 61.908 61.111 17.16 0.00 0.00 4.44
2127 6764 4.640855 CACGTCGACACCAGCCGT 62.641 66.667 17.16 2.42 0.00 5.68
2140 6780 2.433145 CATCCGCAGTCTGCACGT 60.433 61.111 24.13 6.34 45.36 4.49
2145 6785 3.190849 CACCGCATCCGCAGTCTG 61.191 66.667 0.00 0.00 38.40 3.51
2182 6822 2.963854 CGGCCATCTAGCACAGCG 60.964 66.667 2.24 0.00 0.00 5.18
2185 6825 2.900273 GTCCGGCCATCTAGCACA 59.100 61.111 2.24 0.00 0.00 4.57
2217 6857 2.047274 ACATTCGCTGGTCCACGG 60.047 61.111 12.09 0.00 0.00 4.94
2271 6911 1.216678 TGCCCCGTATGATTCCCAAAT 59.783 47.619 0.00 0.00 0.00 2.32
2292 6932 8.555361 GCAGAAAGTAATCTACTCCATGAAATC 58.445 37.037 0.00 0.00 38.26 2.17
2296 6936 6.155221 ACAGCAGAAAGTAATCTACTCCATGA 59.845 38.462 0.00 0.00 38.26 3.07
2297 6937 6.344500 ACAGCAGAAAGTAATCTACTCCATG 58.656 40.000 0.00 0.00 38.26 3.66
2298 6938 6.155221 TGACAGCAGAAAGTAATCTACTCCAT 59.845 38.462 0.00 0.00 38.26 3.41
2332 6972 2.490328 AAATGTGCAAATATCCCGCG 57.510 45.000 0.00 0.00 0.00 6.46
2344 6984 4.273318 ACATAGAGGAAGGGAAAATGTGC 58.727 43.478 0.00 0.00 0.00 4.57
2349 6989 4.175962 AGGTGACATAGAGGAAGGGAAAA 58.824 43.478 0.00 0.00 0.00 2.29
2357 6997 5.576563 TTTTTGGAAGGTGACATAGAGGA 57.423 39.130 0.00 0.00 0.00 3.71
2432 7090 5.395546 CCCAACCCTTGTCAAATTATCCATG 60.396 44.000 0.00 0.00 0.00 3.66
2455 7113 1.000496 GATATGTCGGGTCGAGGAACC 60.000 57.143 0.00 0.00 36.23 3.62
2502 7160 3.492656 CGATAGATGGAACGTGACCCAAT 60.493 47.826 8.38 4.21 35.85 3.16
2518 7176 5.124936 TCTTTCAAGTGAACCGATCGATAGA 59.875 40.000 18.66 0.27 41.42 1.98
2519 7177 5.340803 TCTTTCAAGTGAACCGATCGATAG 58.659 41.667 18.66 1.96 33.13 2.08
2533 7191 4.079958 GGTGGGGGTATACATCTTTCAAGT 60.080 45.833 5.01 0.00 0.00 3.16
2555 7214 2.093128 AGGTGCCAATAGTAAGGAACGG 60.093 50.000 0.00 0.00 33.98 4.44
2562 7221 0.906066 TCGCCAGGTGCCAATAGTAA 59.094 50.000 0.00 0.00 36.24 2.24
2565 7224 0.886490 GGATCGCCAGGTGCCAATAG 60.886 60.000 0.00 0.00 36.24 1.73
2640 7312 3.059352 ACAATCTACCTGCAGTTGGTC 57.941 47.619 13.81 0.00 38.88 4.02
2641 7313 3.412386 GAACAATCTACCTGCAGTTGGT 58.588 45.455 13.81 8.68 41.28 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.