Multiple sequence alignment - TraesCS2B01G509100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G509100 chr2B 100.000 3518 0 0 1 3518 705329179 705325662 0.000000e+00 6497.0
1 TraesCS2B01G509100 chr2B 92.506 1588 99 9 944 2520 705529993 705531571 0.000000e+00 2255.0
2 TraesCS2B01G509100 chr2B 93.376 619 41 0 2898 3516 547823388 547822770 0.000000e+00 917.0
3 TraesCS2B01G509100 chr2B 90.551 127 12 0 2769 2895 525788413 525788287 6.040000e-38 169.0
4 TraesCS2B01G509100 chr2B 89.600 125 13 0 2771 2895 800821596 800821720 3.630000e-35 159.0
5 TraesCS2B01G509100 chr2B 82.353 85 12 3 2856 2938 621700144 621700061 1.750000e-08 71.3
6 TraesCS2B01G509100 chr2D 93.270 1590 91 7 939 2520 584897095 584898676 0.000000e+00 2329.0
7 TraesCS2B01G509100 chr2D 89.344 122 13 0 2774 2895 616223556 616223435 1.690000e-33 154.0
8 TraesCS2B01G509100 chr2A 90.663 1628 119 20 876 2485 719204445 719206057 0.000000e+00 2134.0
9 TraesCS2B01G509100 chr5D 81.959 1419 239 13 1050 2458 224761710 224760299 0.000000e+00 1186.0
10 TraesCS2B01G509100 chr5D 87.500 528 42 12 1 523 537337064 537337572 3.910000e-164 588.0
11 TraesCS2B01G509100 chr5A 81.972 1420 237 14 1050 2458 299254551 299253140 0.000000e+00 1186.0
12 TraesCS2B01G509100 chr5B 81.634 1236 213 10 1050 2278 246951479 246952707 0.000000e+00 1013.0
13 TraesCS2B01G509100 chr5B 92.730 619 41 3 2898 3516 598285993 598285379 0.000000e+00 891.0
14 TraesCS2B01G509100 chr5B 90.611 671 59 4 2848 3516 701587117 701586449 0.000000e+00 887.0
15 TraesCS2B01G509100 chr5B 89.107 560 32 9 1 547 548529129 548529672 0.000000e+00 669.0
16 TraesCS2B01G509100 chr5B 90.984 122 11 0 2774 2895 588152775 588152654 7.810000e-37 165.0
17 TraesCS2B01G509100 chr4B 92.675 628 46 0 2889 3516 509085181 509085808 0.000000e+00 905.0
18 TraesCS2B01G509100 chr4B 90.984 122 10 1 2774 2895 509084994 509085114 2.810000e-36 163.0
19 TraesCS2B01G509100 chr1B 90.512 664 53 7 2856 3516 659050007 659050663 0.000000e+00 869.0
20 TraesCS2B01G509100 chr1B 90.240 666 54 7 2856 3516 13972716 13973375 0.000000e+00 859.0
21 TraesCS2B01G509100 chr1B 88.750 560 34 9 1 547 326017732 326018275 0.000000e+00 658.0
22 TraesCS2B01G509100 chr3B 91.442 631 45 6 2889 3516 760706058 760705434 0.000000e+00 857.0
23 TraesCS2B01G509100 chr3B 90.984 122 11 0 2774 2895 763223977 763224098 7.810000e-37 165.0
24 TraesCS2B01G509100 chr3B 89.764 127 12 1 2770 2895 764181768 764181642 1.010000e-35 161.0
25 TraesCS2B01G509100 chr3B 80.583 103 20 0 1436 1538 122826678 122826780 2.910000e-11 80.5
26 TraesCS2B01G509100 chr3B 76.623 154 31 5 1391 1541 123033691 123033842 2.910000e-11 80.5
27 TraesCS2B01G509100 chr6B 89.640 666 56 9 2856 3516 36470068 36469411 0.000000e+00 835.0
28 TraesCS2B01G509100 chr6B 82.500 80 11 3 2119 2197 86445907 86445830 2.270000e-07 67.6
29 TraesCS2B01G509100 chr6B 89.091 55 4 2 2144 2197 86671866 86671813 2.270000e-07 67.6
30 TraesCS2B01G509100 chr6A 89.640 666 55 10 2856 3516 132441081 132440425 0.000000e+00 835.0
31 TraesCS2B01G509100 chr6A 89.091 55 4 2 2144 2197 48640677 48640624 2.270000e-07 67.6
32 TraesCS2B01G509100 chr7D 90.860 558 21 10 1 547 611746247 611746785 0.000000e+00 721.0
33 TraesCS2B01G509100 chr3D 90.984 122 11 0 2774 2895 607696905 607696784 7.810000e-37 165.0
34 TraesCS2B01G509100 chr3D 83.810 105 13 4 1436 1538 75947208 75947310 2.890000e-16 97.1
35 TraesCS2B01G509100 chr3D 84.524 84 11 2 1438 1520 75962516 75962598 8.090000e-12 82.4
36 TraesCS2B01G509100 chr7B 89.683 126 11 2 2771 2895 616753312 616753188 3.630000e-35 159.0
37 TraesCS2B01G509100 chr7B 100.000 32 0 0 549 580 30795924 30795893 3.790000e-05 60.2
38 TraesCS2B01G509100 chr3A 77.333 150 30 4 1391 1538 90364456 90364603 6.260000e-13 86.1
39 TraesCS2B01G509100 chr6D 85.455 55 6 2 2144 2197 37116729 37116676 4.910000e-04 56.5
40 TraesCS2B01G509100 chr1D 97.059 34 0 1 550 583 19893593 19893625 4.910000e-04 56.5
41 TraesCS2B01G509100 chr1D 92.105 38 3 0 2134 2171 436086151 436086114 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G509100 chr2B 705325662 705329179 3517 True 6497 6497 100.0000 1 3518 1 chr2B.!!$R4 3517
1 TraesCS2B01G509100 chr2B 705529993 705531571 1578 False 2255 2255 92.5060 944 2520 1 chr2B.!!$F1 1576
2 TraesCS2B01G509100 chr2B 547822770 547823388 618 True 917 917 93.3760 2898 3516 1 chr2B.!!$R2 618
3 TraesCS2B01G509100 chr2D 584897095 584898676 1581 False 2329 2329 93.2700 939 2520 1 chr2D.!!$F1 1581
4 TraesCS2B01G509100 chr2A 719204445 719206057 1612 False 2134 2134 90.6630 876 2485 1 chr2A.!!$F1 1609
5 TraesCS2B01G509100 chr5D 224760299 224761710 1411 True 1186 1186 81.9590 1050 2458 1 chr5D.!!$R1 1408
6 TraesCS2B01G509100 chr5D 537337064 537337572 508 False 588 588 87.5000 1 523 1 chr5D.!!$F1 522
7 TraesCS2B01G509100 chr5A 299253140 299254551 1411 True 1186 1186 81.9720 1050 2458 1 chr5A.!!$R1 1408
8 TraesCS2B01G509100 chr5B 246951479 246952707 1228 False 1013 1013 81.6340 1050 2278 1 chr5B.!!$F1 1228
9 TraesCS2B01G509100 chr5B 598285379 598285993 614 True 891 891 92.7300 2898 3516 1 chr5B.!!$R2 618
10 TraesCS2B01G509100 chr5B 701586449 701587117 668 True 887 887 90.6110 2848 3516 1 chr5B.!!$R3 668
11 TraesCS2B01G509100 chr5B 548529129 548529672 543 False 669 669 89.1070 1 547 1 chr5B.!!$F2 546
12 TraesCS2B01G509100 chr4B 509084994 509085808 814 False 534 905 91.8295 2774 3516 2 chr4B.!!$F1 742
13 TraesCS2B01G509100 chr1B 659050007 659050663 656 False 869 869 90.5120 2856 3516 1 chr1B.!!$F3 660
14 TraesCS2B01G509100 chr1B 13972716 13973375 659 False 859 859 90.2400 2856 3516 1 chr1B.!!$F1 660
15 TraesCS2B01G509100 chr1B 326017732 326018275 543 False 658 658 88.7500 1 547 1 chr1B.!!$F2 546
16 TraesCS2B01G509100 chr3B 760705434 760706058 624 True 857 857 91.4420 2889 3516 1 chr3B.!!$R1 627
17 TraesCS2B01G509100 chr6B 36469411 36470068 657 True 835 835 89.6400 2856 3516 1 chr6B.!!$R1 660
18 TraesCS2B01G509100 chr6A 132440425 132441081 656 True 835 835 89.6400 2856 3516 1 chr6A.!!$R2 660
19 TraesCS2B01G509100 chr7D 611746247 611746785 538 False 721 721 90.8600 1 547 1 chr7D.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
894 912 0.034059 CCGGCACAGGGCTAAGATAG 59.966 60.0 0.0 0.0 44.01 2.08 F
907 925 0.036164 AAGATAGCACAACGGCACCA 59.964 50.0 0.0 0.0 35.83 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2382 2420 0.101759 CCTCTTGCGCCATCCATTTG 59.898 55.0 4.18 0.00 0.0 2.32 R
2754 2794 0.102481 TATGGAGAAGAAGGCGACGC 59.898 55.0 12.43 12.43 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 109 2.734670 CTGCATTGCAAATGTATCCCG 58.265 47.619 13.18 0.00 38.41 5.14
108 113 0.814457 TTGCAAATGTATCCCGGCAC 59.186 50.000 0.00 0.00 0.00 5.01
109 114 1.034838 TGCAAATGTATCCCGGCACC 61.035 55.000 0.00 0.00 0.00 5.01
110 115 1.734388 GCAAATGTATCCCGGCACCC 61.734 60.000 0.00 0.00 0.00 4.61
111 116 0.395036 CAAATGTATCCCGGCACCCA 60.395 55.000 0.00 0.00 0.00 4.51
112 117 0.395173 AAATGTATCCCGGCACCCAC 60.395 55.000 0.00 0.00 0.00 4.61
113 118 2.602746 AATGTATCCCGGCACCCACG 62.603 60.000 0.00 0.00 0.00 4.94
195 202 1.533625 TTGTGTGCCATAAGCTGTCC 58.466 50.000 0.00 0.00 44.23 4.02
197 204 1.089920 GTGTGCCATAAGCTGTCCTG 58.910 55.000 0.00 0.00 44.23 3.86
208 215 3.695830 AGCTGTCCTGGACGAAAAATA 57.304 42.857 21.15 1.63 34.95 1.40
342 350 1.531423 ACAAGCTGCCTGAACATCAG 58.469 50.000 5.06 0.32 43.91 2.90
358 366 7.584108 TGAACATCAGACATCACAATTAACAC 58.416 34.615 0.00 0.00 0.00 3.32
393 411 4.760047 CTGGAGAACACCCGCGGG 62.760 72.222 42.17 42.17 42.03 6.13
431 449 1.204312 GCTCCACGAACGCACTTTC 59.796 57.895 0.00 0.00 0.00 2.62
479 497 1.453155 ATCAACCACGACTTGCATCC 58.547 50.000 0.00 0.00 0.00 3.51
533 551 0.753848 CATGGGCATGGAGCATGTCA 60.754 55.000 0.00 0.00 46.88 3.58
534 552 0.467474 ATGGGCATGGAGCATGTCAG 60.467 55.000 0.00 0.00 46.88 3.51
535 553 1.225426 GGGCATGGAGCATGTCAGA 59.775 57.895 0.00 0.00 46.88 3.27
536 554 0.178998 GGGCATGGAGCATGTCAGAT 60.179 55.000 0.00 0.00 46.88 2.90
537 555 0.952280 GGCATGGAGCATGTCAGATG 59.048 55.000 0.00 0.00 44.75 2.90
538 556 1.476291 GGCATGGAGCATGTCAGATGA 60.476 52.381 0.00 0.00 44.75 2.92
539 557 1.874231 GCATGGAGCATGTCAGATGAG 59.126 52.381 0.00 0.00 43.10 2.90
540 558 2.745482 GCATGGAGCATGTCAGATGAGT 60.745 50.000 0.00 0.00 43.10 3.41
541 559 2.685850 TGGAGCATGTCAGATGAGTG 57.314 50.000 0.00 0.00 0.00 3.51
542 560 1.904537 TGGAGCATGTCAGATGAGTGT 59.095 47.619 0.00 0.00 0.00 3.55
543 561 3.099141 TGGAGCATGTCAGATGAGTGTA 58.901 45.455 0.00 0.00 0.00 2.90
544 562 3.515104 TGGAGCATGTCAGATGAGTGTAA 59.485 43.478 0.00 0.00 0.00 2.41
545 563 4.118410 GGAGCATGTCAGATGAGTGTAAG 58.882 47.826 0.00 0.00 0.00 2.34
546 564 4.142071 GGAGCATGTCAGATGAGTGTAAGA 60.142 45.833 0.00 0.00 0.00 2.10
547 565 4.753233 AGCATGTCAGATGAGTGTAAGAC 58.247 43.478 0.00 0.00 0.00 3.01
548 566 4.465660 AGCATGTCAGATGAGTGTAAGACT 59.534 41.667 0.00 0.00 37.76 3.24
549 567 5.654209 AGCATGTCAGATGAGTGTAAGACTA 59.346 40.000 0.00 0.00 33.83 2.59
550 568 5.746245 GCATGTCAGATGAGTGTAAGACTAC 59.254 44.000 0.00 0.00 33.83 2.73
551 569 6.625960 GCATGTCAGATGAGTGTAAGACTACA 60.626 42.308 0.00 0.00 33.83 2.74
552 570 7.487484 CATGTCAGATGAGTGTAAGACTACAT 58.513 38.462 0.00 0.00 40.16 2.29
553 571 6.856895 TGTCAGATGAGTGTAAGACTACATG 58.143 40.000 0.00 0.00 40.16 3.21
554 572 5.746245 GTCAGATGAGTGTAAGACTACATGC 59.254 44.000 0.00 0.00 40.16 4.06
555 573 5.418840 TCAGATGAGTGTAAGACTACATGCA 59.581 40.000 0.00 0.00 40.16 3.96
556 574 5.747675 CAGATGAGTGTAAGACTACATGCAG 59.252 44.000 0.00 0.00 40.16 4.41
557 575 5.420421 AGATGAGTGTAAGACTACATGCAGT 59.580 40.000 0.00 0.00 40.16 4.40
558 576 5.060662 TGAGTGTAAGACTACATGCAGTC 57.939 43.478 17.01 17.01 44.44 3.51
559 577 4.082190 TGAGTGTAAGACTACATGCAGTCC 60.082 45.833 20.34 7.93 45.08 3.85
560 578 4.090090 AGTGTAAGACTACATGCAGTCCT 58.910 43.478 20.34 11.81 45.08 3.85
561 579 4.158764 AGTGTAAGACTACATGCAGTCCTC 59.841 45.833 20.34 12.33 45.08 3.71
562 580 3.447586 TGTAAGACTACATGCAGTCCTCC 59.552 47.826 20.34 10.09 45.08 4.30
563 581 2.541233 AGACTACATGCAGTCCTCCT 57.459 50.000 20.34 1.46 45.08 3.69
564 582 2.106566 AGACTACATGCAGTCCTCCTG 58.893 52.381 20.34 0.00 45.08 3.86
572 590 3.658398 CAGTCCTCCTGCATGGTTT 57.342 52.632 0.00 0.00 33.59 3.27
573 591 1.171308 CAGTCCTCCTGCATGGTTTG 58.829 55.000 0.00 0.00 33.59 2.93
574 592 1.067295 AGTCCTCCTGCATGGTTTGA 58.933 50.000 0.00 0.00 37.07 2.69
575 593 1.425066 AGTCCTCCTGCATGGTTTGAA 59.575 47.619 0.00 0.00 37.07 2.69
576 594 2.158475 AGTCCTCCTGCATGGTTTGAAA 60.158 45.455 0.00 0.00 37.07 2.69
577 595 2.627699 GTCCTCCTGCATGGTTTGAAAA 59.372 45.455 0.00 0.00 37.07 2.29
578 596 3.069443 GTCCTCCTGCATGGTTTGAAAAA 59.931 43.478 0.00 0.00 37.07 1.94
605 623 9.618890 ATGAAGATGAATTCCTCTTTTAATCGA 57.381 29.630 22.08 0.00 31.99 3.59
606 624 9.448438 TGAAGATGAATTCCTCTTTTAATCGAA 57.552 29.630 22.08 4.29 31.99 3.71
607 625 9.928236 GAAGATGAATTCCTCTTTTAATCGAAG 57.072 33.333 22.08 0.00 31.99 3.79
608 626 7.924940 AGATGAATTCCTCTTTTAATCGAAGC 58.075 34.615 7.37 0.00 0.00 3.86
609 627 6.436843 TGAATTCCTCTTTTAATCGAAGCC 57.563 37.500 2.27 0.00 0.00 4.35
610 628 5.064707 TGAATTCCTCTTTTAATCGAAGCCG 59.935 40.000 2.27 0.00 37.07 5.52
611 629 2.901249 TCCTCTTTTAATCGAAGCCGG 58.099 47.619 0.00 0.00 36.24 6.13
612 630 2.498481 TCCTCTTTTAATCGAAGCCGGA 59.502 45.455 5.05 0.00 36.24 5.14
613 631 3.055675 TCCTCTTTTAATCGAAGCCGGAA 60.056 43.478 5.05 0.00 36.24 4.30
614 632 3.309954 CCTCTTTTAATCGAAGCCGGAAG 59.690 47.826 5.05 0.00 36.24 3.46
615 633 2.676342 TCTTTTAATCGAAGCCGGAAGC 59.324 45.455 5.05 0.00 44.25 3.86
628 646 4.522722 GCCGGAAGCTATAGATTGTAGT 57.477 45.455 8.21 0.00 38.99 2.73
629 647 5.640189 GCCGGAAGCTATAGATTGTAGTA 57.360 43.478 8.21 0.00 38.99 1.82
630 648 6.022163 GCCGGAAGCTATAGATTGTAGTAA 57.978 41.667 8.21 0.00 38.99 2.24
631 649 5.862860 GCCGGAAGCTATAGATTGTAGTAAC 59.137 44.000 8.21 0.00 38.99 2.50
632 650 6.294620 GCCGGAAGCTATAGATTGTAGTAACT 60.295 42.308 8.21 0.00 38.99 2.24
633 651 7.094463 GCCGGAAGCTATAGATTGTAGTAACTA 60.094 40.741 8.21 0.00 38.99 2.24
634 652 8.452534 CCGGAAGCTATAGATTGTAGTAACTAG 58.547 40.741 8.21 0.00 0.00 2.57
635 653 9.001542 CGGAAGCTATAGATTGTAGTAACTAGT 57.998 37.037 8.21 0.00 0.00 2.57
644 662 8.630278 AGATTGTAGTAACTAGTTAACGCATG 57.370 34.615 16.82 0.00 0.00 4.06
645 663 7.705325 AGATTGTAGTAACTAGTTAACGCATGG 59.295 37.037 16.82 0.00 0.00 3.66
646 664 5.653507 TGTAGTAACTAGTTAACGCATGGG 58.346 41.667 16.82 8.44 0.00 4.00
647 665 5.418524 TGTAGTAACTAGTTAACGCATGGGA 59.581 40.000 16.82 0.00 0.00 4.37
648 666 4.752146 AGTAACTAGTTAACGCATGGGAC 58.248 43.478 16.82 4.33 0.00 4.46
665 683 5.818678 TGGGACATGTGGTTATATACTCC 57.181 43.478 1.15 0.00 0.00 3.85
666 684 4.595781 TGGGACATGTGGTTATATACTCCC 59.404 45.833 1.15 3.21 36.17 4.30
667 685 4.844655 GGGACATGTGGTTATATACTCCCT 59.155 45.833 1.15 0.00 33.29 4.20
668 686 5.046520 GGGACATGTGGTTATATACTCCCTC 60.047 48.000 1.15 0.00 33.29 4.30
669 687 5.780793 GGACATGTGGTTATATACTCCCTCT 59.219 44.000 1.15 0.00 0.00 3.69
670 688 6.295349 GGACATGTGGTTATATACTCCCTCTG 60.295 46.154 1.15 0.00 0.00 3.35
671 689 6.143915 ACATGTGGTTATATACTCCCTCTGT 58.856 40.000 0.00 0.00 0.00 3.41
672 690 7.302948 ACATGTGGTTATATACTCCCTCTGTA 58.697 38.462 0.00 0.00 0.00 2.74
673 691 7.956315 ACATGTGGTTATATACTCCCTCTGTAT 59.044 37.037 0.00 0.00 35.19 2.29
674 692 8.470805 CATGTGGTTATATACTCCCTCTGTATC 58.529 40.741 0.00 0.00 33.32 2.24
675 693 7.532199 TGTGGTTATATACTCCCTCTGTATCA 58.468 38.462 0.00 0.00 33.32 2.15
676 694 7.450634 TGTGGTTATATACTCCCTCTGTATCAC 59.549 40.741 0.00 0.00 33.32 3.06
677 695 7.450634 GTGGTTATATACTCCCTCTGTATCACA 59.549 40.741 0.00 0.00 33.32 3.58
678 696 8.008332 TGGTTATATACTCCCTCTGTATCACAA 58.992 37.037 0.00 0.00 33.32 3.33
679 697 9.036980 GGTTATATACTCCCTCTGTATCACAAT 57.963 37.037 0.00 0.00 33.32 2.71
683 701 9.830186 ATATACTCCCTCTGTATCACAATACTT 57.170 33.333 0.00 0.00 38.87 2.24
684 702 6.227298 ACTCCCTCTGTATCACAATACTTG 57.773 41.667 0.00 0.00 38.87 3.16
685 703 5.721960 ACTCCCTCTGTATCACAATACTTGT 59.278 40.000 0.00 0.00 46.75 3.16
686 704 6.895756 ACTCCCTCTGTATCACAATACTTGTA 59.104 38.462 0.00 0.00 43.23 2.41
687 705 7.068839 ACTCCCTCTGTATCACAATACTTGTAG 59.931 40.741 0.00 0.00 43.23 2.74
688 706 5.986135 CCCTCTGTATCACAATACTTGTAGC 59.014 44.000 0.00 0.00 43.23 3.58
689 707 6.183360 CCCTCTGTATCACAATACTTGTAGCT 60.183 42.308 0.00 0.00 43.23 3.32
690 708 6.699204 CCTCTGTATCACAATACTTGTAGCTG 59.301 42.308 0.00 0.00 43.23 4.24
691 709 6.573434 TCTGTATCACAATACTTGTAGCTGG 58.427 40.000 0.00 0.00 43.23 4.85
692 710 6.379988 TCTGTATCACAATACTTGTAGCTGGA 59.620 38.462 0.00 0.00 43.23 3.86
693 711 7.069950 TCTGTATCACAATACTTGTAGCTGGAT 59.930 37.037 0.00 0.00 43.23 3.41
694 712 6.986231 TGTATCACAATACTTGTAGCTGGATG 59.014 38.462 0.00 0.00 43.23 3.51
695 713 5.675684 TCACAATACTTGTAGCTGGATGA 57.324 39.130 0.00 0.00 43.23 2.92
696 714 6.048732 TCACAATACTTGTAGCTGGATGAA 57.951 37.500 0.00 0.00 43.23 2.57
697 715 5.874810 TCACAATACTTGTAGCTGGATGAAC 59.125 40.000 0.00 0.00 43.23 3.18
698 716 5.877012 CACAATACTTGTAGCTGGATGAACT 59.123 40.000 0.00 0.00 43.23 3.01
699 717 7.041721 CACAATACTTGTAGCTGGATGAACTA 58.958 38.462 0.00 0.00 43.23 2.24
700 718 7.549134 CACAATACTTGTAGCTGGATGAACTAA 59.451 37.037 0.00 0.00 43.23 2.24
701 719 7.766278 ACAATACTTGTAGCTGGATGAACTAAG 59.234 37.037 0.00 0.00 43.27 2.18
702 720 7.661536 ATACTTGTAGCTGGATGAACTAAGA 57.338 36.000 0.00 0.00 0.00 2.10
703 721 5.725362 ACTTGTAGCTGGATGAACTAAGAC 58.275 41.667 0.00 0.00 0.00 3.01
704 722 5.482175 ACTTGTAGCTGGATGAACTAAGACT 59.518 40.000 0.00 0.00 0.00 3.24
705 723 5.584253 TGTAGCTGGATGAACTAAGACTC 57.416 43.478 0.00 0.00 0.00 3.36
706 724 3.791973 AGCTGGATGAACTAAGACTCG 57.208 47.619 0.00 0.00 0.00 4.18
707 725 3.357203 AGCTGGATGAACTAAGACTCGA 58.643 45.455 0.00 0.00 0.00 4.04
708 726 3.957497 AGCTGGATGAACTAAGACTCGAT 59.043 43.478 0.00 0.00 0.00 3.59
709 727 4.404073 AGCTGGATGAACTAAGACTCGATT 59.596 41.667 0.00 0.00 0.00 3.34
710 728 5.594725 AGCTGGATGAACTAAGACTCGATTA 59.405 40.000 0.00 0.00 0.00 1.75
711 729 6.266558 AGCTGGATGAACTAAGACTCGATTAT 59.733 38.462 0.00 0.00 0.00 1.28
712 730 7.448777 AGCTGGATGAACTAAGACTCGATTATA 59.551 37.037 0.00 0.00 0.00 0.98
713 731 8.082852 GCTGGATGAACTAAGACTCGATTATAA 58.917 37.037 0.00 0.00 0.00 0.98
714 732 9.400638 CTGGATGAACTAAGACTCGATTATAAC 57.599 37.037 0.00 0.00 0.00 1.89
715 733 9.132923 TGGATGAACTAAGACTCGATTATAACT 57.867 33.333 0.00 0.00 0.00 2.24
746 764 8.063200 AGGAATAAAACTCCTTAAATTTCCCG 57.937 34.615 0.00 0.00 40.61 5.14
747 765 7.123697 AGGAATAAAACTCCTTAAATTTCCCGG 59.876 37.037 0.00 0.00 40.61 5.73
748 766 6.785337 ATAAAACTCCTTAAATTTCCCGGG 57.215 37.500 16.85 16.85 0.00 5.73
749 767 2.820728 ACTCCTTAAATTTCCCGGGG 57.179 50.000 23.50 6.77 0.00 5.73
750 768 2.281034 ACTCCTTAAATTTCCCGGGGA 58.719 47.619 23.50 12.99 0.00 4.81
751 769 2.650827 ACTCCTTAAATTTCCCGGGGAA 59.349 45.455 24.64 24.64 40.27 3.97
771 789 1.226746 AAAACTGTACGGCTGACTGC 58.773 50.000 0.00 0.00 41.94 4.40
783 801 3.772060 GCTGACTGCCAAAAGGAATAG 57.228 47.619 0.00 0.00 35.15 1.73
784 802 2.424956 GCTGACTGCCAAAAGGAATAGG 59.575 50.000 0.00 0.00 35.15 2.57
785 803 3.873801 GCTGACTGCCAAAAGGAATAGGA 60.874 47.826 0.00 0.00 35.15 2.94
786 804 4.530875 CTGACTGCCAAAAGGAATAGGAT 58.469 43.478 0.00 0.00 0.00 3.24
787 805 5.684704 CTGACTGCCAAAAGGAATAGGATA 58.315 41.667 0.00 0.00 0.00 2.59
788 806 6.073447 TGACTGCCAAAAGGAATAGGATAA 57.927 37.500 0.00 0.00 0.00 1.75
789 807 5.885912 TGACTGCCAAAAGGAATAGGATAAC 59.114 40.000 0.00 0.00 0.00 1.89
790 808 5.201243 ACTGCCAAAAGGAATAGGATAACC 58.799 41.667 0.00 0.00 0.00 2.85
791 809 4.204012 TGCCAAAAGGAATAGGATAACCG 58.796 43.478 0.00 0.00 41.83 4.44
792 810 4.204799 GCCAAAAGGAATAGGATAACCGT 58.795 43.478 0.00 0.00 41.83 4.83
793 811 4.275196 GCCAAAAGGAATAGGATAACCGTC 59.725 45.833 0.00 0.00 41.83 4.79
794 812 4.510340 CCAAAAGGAATAGGATAACCGTCG 59.490 45.833 0.00 0.00 41.83 5.12
795 813 4.332428 AAAGGAATAGGATAACCGTCGG 57.668 45.455 10.48 10.48 41.83 4.79
796 814 2.954792 AGGAATAGGATAACCGTCGGT 58.045 47.619 12.23 12.23 41.83 4.69
797 815 2.626743 AGGAATAGGATAACCGTCGGTG 59.373 50.000 19.67 0.00 41.83 4.94
798 816 2.363359 GGAATAGGATAACCGTCGGTGT 59.637 50.000 19.67 10.18 41.83 4.16
799 817 3.551659 GGAATAGGATAACCGTCGGTGTC 60.552 52.174 19.67 18.31 41.83 3.67
800 818 1.016627 TAGGATAACCGTCGGTGTCG 58.983 55.000 19.67 0.00 41.83 4.35
801 819 0.677731 AGGATAACCGTCGGTGTCGA 60.678 55.000 19.67 4.29 41.35 4.20
819 837 3.510846 CGTCACCCGTAGCTAGCT 58.489 61.111 23.12 23.12 0.00 3.32
820 838 1.064296 CGTCACCCGTAGCTAGCTG 59.936 63.158 27.68 12.81 0.00 4.24
821 839 1.227002 GTCACCCGTAGCTAGCTGC 60.227 63.158 27.68 24.53 43.29 5.25
830 848 4.950479 GCTAGCTGCTGGTGATGT 57.050 55.556 13.43 0.00 38.95 3.06
831 849 3.165606 GCTAGCTGCTGGTGATGTT 57.834 52.632 13.43 0.00 38.95 2.71
832 850 1.457346 GCTAGCTGCTGGTGATGTTT 58.543 50.000 13.43 0.00 38.95 2.83
833 851 1.399791 GCTAGCTGCTGGTGATGTTTC 59.600 52.381 13.43 0.00 38.95 2.78
834 852 2.012673 CTAGCTGCTGGTGATGTTTCC 58.987 52.381 13.43 0.00 0.00 3.13
835 853 0.957395 AGCTGCTGGTGATGTTTCCG 60.957 55.000 0.00 0.00 0.00 4.30
836 854 1.237285 GCTGCTGGTGATGTTTCCGT 61.237 55.000 0.00 0.00 0.00 4.69
837 855 1.238439 CTGCTGGTGATGTTTCCGTT 58.762 50.000 0.00 0.00 0.00 4.44
838 856 1.608590 CTGCTGGTGATGTTTCCGTTT 59.391 47.619 0.00 0.00 0.00 3.60
839 857 1.606668 TGCTGGTGATGTTTCCGTTTC 59.393 47.619 0.00 0.00 0.00 2.78
840 858 1.399727 GCTGGTGATGTTTCCGTTTCG 60.400 52.381 0.00 0.00 0.00 3.46
850 868 2.631428 CCGTTTCGGCACACTGTG 59.369 61.111 6.19 6.19 41.17 3.66
859 877 3.817787 CACACTGTGCACTGCAGT 58.182 55.556 22.15 15.25 46.86 4.40
868 886 4.584518 CACTGCAGTGCACCCCCA 62.585 66.667 32.39 7.36 39.39 4.96
869 887 4.586235 ACTGCAGTGCACCCCCAC 62.586 66.667 20.97 0.00 33.79 4.61
870 888 4.275508 CTGCAGTGCACCCCCACT 62.276 66.667 15.37 0.00 46.47 4.00
874 892 3.015383 AGTGCACCCCCACTGTTT 58.985 55.556 14.63 0.00 44.00 2.83
887 905 3.850098 CTGTTTCCGGCACAGGGCT 62.850 63.158 20.59 0.00 44.01 5.19
894 912 0.034059 CCGGCACAGGGCTAAGATAG 59.966 60.000 0.00 0.00 44.01 2.08
906 924 1.933853 CTAAGATAGCACAACGGCACC 59.066 52.381 0.00 0.00 35.83 5.01
907 925 0.036164 AAGATAGCACAACGGCACCA 59.964 50.000 0.00 0.00 35.83 4.17
908 926 0.391661 AGATAGCACAACGGCACCAG 60.392 55.000 0.00 0.00 35.83 4.00
930 948 2.874701 CCAATATATAGGGCGCATGAGC 59.125 50.000 13.62 13.62 37.42 4.26
959 977 3.739810 CCATCACATGAGAAGCAGATACG 59.260 47.826 0.00 0.00 0.00 3.06
972 990 3.859961 AGCAGATACGTCTTCATTTCACG 59.140 43.478 0.00 0.00 39.48 4.35
974 992 4.091509 GCAGATACGTCTTCATTTCACGTT 59.908 41.667 1.22 0.00 44.10 3.99
975 993 5.541910 CAGATACGTCTTCATTTCACGTTG 58.458 41.667 1.22 0.00 44.10 4.10
991 1009 8.483743 TTTCACGTTGAAATTTATCGTCTTTC 57.516 30.769 10.37 0.00 41.02 2.62
992 1010 6.595794 TCACGTTGAAATTTATCGTCTTTCC 58.404 36.000 10.37 0.00 32.47 3.13
1012 1030 0.689412 TCTATCCATGGCCACGGACA 60.689 55.000 25.57 11.73 37.65 4.02
1235 1264 2.264480 CGTCGGCAATGGTGAGGA 59.736 61.111 0.00 0.00 0.00 3.71
1236 1265 1.153369 CGTCGGCAATGGTGAGGAT 60.153 57.895 0.00 0.00 0.00 3.24
1237 1266 0.104120 CGTCGGCAATGGTGAGGATA 59.896 55.000 0.00 0.00 0.00 2.59
1357 1389 1.066573 CGACCTTTGAGAGCCTGTCAT 60.067 52.381 0.00 0.00 0.00 3.06
1360 1392 1.407989 CCTTTGAGAGCCTGTCATCCC 60.408 57.143 0.00 0.00 0.00 3.85
1363 1395 0.689080 TGAGAGCCTGTCATCCCTCC 60.689 60.000 0.00 0.00 0.00 4.30
1372 1404 2.765807 CATCCCTCCTCGCCACCT 60.766 66.667 0.00 0.00 0.00 4.00
1542 1574 4.039357 CACGGCGACCTCGTCACT 62.039 66.667 16.62 0.00 45.47 3.41
1617 1649 3.833645 CGGATCCGCGACTTCCCA 61.834 66.667 23.37 0.00 0.00 4.37
1657 1689 2.358003 GCAGCGAGCTGGTCAAGT 60.358 61.111 24.25 0.00 43.77 3.16
1669 1701 3.251004 GCTGGTCAAGTTCTTCAACGAAT 59.749 43.478 0.00 0.00 37.61 3.34
1686 1718 2.185310 AATCGGCCCGAGAGCTGTTT 62.185 55.000 13.12 0.00 39.91 2.83
1703 1735 0.960364 TTTGAGCACTTGGGCGATCC 60.960 55.000 0.00 0.00 39.27 3.36
1704 1736 1.841302 TTGAGCACTTGGGCGATCCT 61.841 55.000 0.00 0.00 39.27 3.24
1794 1829 1.080974 CCTAGACGTGTTCGCCGTT 60.081 57.895 0.00 0.00 38.92 4.44
1819 1857 1.384989 GGTGATCGGCTTCTCCTCGA 61.385 60.000 0.00 0.00 37.33 4.04
2171 2209 4.070552 GAACTCGGCGCTGGAGGT 62.071 66.667 25.28 21.75 35.82 3.85
2228 2266 2.432628 GTTGGACCAGCCGACGAG 60.433 66.667 0.00 0.00 41.17 4.18
2295 2333 2.357517 AACAGCGAGGGCGTCTTG 60.358 61.111 5.58 6.36 46.35 3.02
2310 2348 2.203938 TTGACCGGGGAGGAGCTT 60.204 61.111 6.32 0.00 45.00 3.74
2336 2374 1.742880 GCGTTGAGCTGCTCATGGA 60.743 57.895 30.80 15.30 40.39 3.41
2338 2376 1.376543 CGTTGAGCTGCTCATGGATT 58.623 50.000 30.80 0.00 40.39 3.01
2345 2383 1.820483 GCTGCTCATGGATTATGGCCA 60.820 52.381 8.56 8.56 40.24 5.36
2382 2420 2.693074 CAGGGAAAGAGTAGAGGCTCTC 59.307 54.545 22.53 12.70 44.34 3.20
2386 2424 4.163268 GGGAAAGAGTAGAGGCTCTCAAAT 59.837 45.833 22.53 3.10 44.34 2.32
2456 2496 3.372730 GCTTTGTCATGGCGGCCA 61.373 61.111 26.11 26.11 38.19 5.36
2470 2510 0.311790 CGGCCAATTCAATCATCGGG 59.688 55.000 2.24 0.00 0.00 5.14
2498 2538 1.604755 TGCACGAATACACCACCAAAC 59.395 47.619 0.00 0.00 0.00 2.93
2499 2539 1.604755 GCACGAATACACCACCAAACA 59.395 47.619 0.00 0.00 0.00 2.83
2504 2544 3.424302 CGAATACACCACCAAACATGTCG 60.424 47.826 0.00 0.00 0.00 4.35
2506 2546 1.593196 ACACCACCAAACATGTCGAG 58.407 50.000 0.00 0.00 0.00 4.04
2511 2551 2.337583 CACCAAACATGTCGAGATCGT 58.662 47.619 0.00 0.00 40.80 3.73
2512 2552 2.092681 CACCAAACATGTCGAGATCGTG 59.907 50.000 0.00 0.00 40.80 4.35
2513 2553 2.029380 ACCAAACATGTCGAGATCGTGA 60.029 45.455 0.00 0.00 40.80 4.35
2514 2554 3.190079 CCAAACATGTCGAGATCGTGAT 58.810 45.455 0.00 0.00 40.80 3.06
2515 2555 3.618594 CCAAACATGTCGAGATCGTGATT 59.381 43.478 0.00 0.00 40.80 2.57
2516 2556 4.803613 CCAAACATGTCGAGATCGTGATTA 59.196 41.667 0.00 0.00 40.80 1.75
2517 2557 5.290885 CCAAACATGTCGAGATCGTGATTAA 59.709 40.000 0.00 0.00 40.80 1.40
2518 2558 6.406018 CAAACATGTCGAGATCGTGATTAAG 58.594 40.000 0.00 0.00 40.80 1.85
2519 2559 5.250235 ACATGTCGAGATCGTGATTAAGT 57.750 39.130 1.70 0.00 40.80 2.24
2520 2560 6.373186 ACATGTCGAGATCGTGATTAAGTA 57.627 37.500 1.70 0.00 40.80 2.24
2521 2561 6.200100 ACATGTCGAGATCGTGATTAAGTAC 58.800 40.000 1.70 0.00 40.80 2.73
2522 2562 4.829808 TGTCGAGATCGTGATTAAGTACG 58.170 43.478 1.70 7.69 41.38 3.67
2523 2563 4.209870 GTCGAGATCGTGATTAAGTACGG 58.790 47.826 12.52 0.00 40.48 4.02
2524 2564 3.249320 TCGAGATCGTGATTAAGTACGGG 59.751 47.826 12.52 1.52 40.48 5.28
2525 2565 3.249320 CGAGATCGTGATTAAGTACGGGA 59.751 47.826 12.52 0.00 40.48 5.14
2526 2566 4.535116 GAGATCGTGATTAAGTACGGGAC 58.465 47.826 12.52 0.00 40.48 4.46
2527 2567 3.949754 AGATCGTGATTAAGTACGGGACA 59.050 43.478 12.52 0.00 40.48 4.02
2528 2568 3.492421 TCGTGATTAAGTACGGGACAC 57.508 47.619 12.52 0.00 40.48 3.67
2529 2569 2.819019 TCGTGATTAAGTACGGGACACA 59.181 45.455 12.52 0.00 40.48 3.72
2530 2570 3.119743 TCGTGATTAAGTACGGGACACAG 60.120 47.826 12.52 0.00 40.48 3.66
2531 2571 3.366679 CGTGATTAAGTACGGGACACAGT 60.367 47.826 6.43 0.00 36.71 3.55
2532 2572 3.924686 GTGATTAAGTACGGGACACAGTG 59.075 47.826 0.00 0.00 0.00 3.66
2533 2573 3.827876 TGATTAAGTACGGGACACAGTGA 59.172 43.478 7.81 0.00 0.00 3.41
2534 2574 4.281435 TGATTAAGTACGGGACACAGTGAA 59.719 41.667 7.81 0.00 0.00 3.18
2535 2575 4.669206 TTAAGTACGGGACACAGTGAAA 57.331 40.909 7.81 0.00 0.00 2.69
2536 2576 3.764237 AAGTACGGGACACAGTGAAAT 57.236 42.857 7.81 0.00 0.00 2.17
2537 2577 4.877378 AAGTACGGGACACAGTGAAATA 57.123 40.909 7.81 0.00 0.00 1.40
2538 2578 4.877378 AGTACGGGACACAGTGAAATAA 57.123 40.909 7.81 0.00 0.00 1.40
2539 2579 5.217978 AGTACGGGACACAGTGAAATAAA 57.782 39.130 7.81 0.00 0.00 1.40
2540 2580 5.613329 AGTACGGGACACAGTGAAATAAAA 58.387 37.500 7.81 0.00 0.00 1.52
2541 2581 6.235664 AGTACGGGACACAGTGAAATAAAAT 58.764 36.000 7.81 0.00 0.00 1.82
2542 2582 7.388437 AGTACGGGACACAGTGAAATAAAATA 58.612 34.615 7.81 0.00 0.00 1.40
2543 2583 6.737254 ACGGGACACAGTGAAATAAAATAG 57.263 37.500 7.81 0.00 0.00 1.73
2544 2584 5.646360 ACGGGACACAGTGAAATAAAATAGG 59.354 40.000 7.81 0.00 0.00 2.57
2545 2585 5.878116 CGGGACACAGTGAAATAAAATAGGA 59.122 40.000 7.81 0.00 0.00 2.94
2546 2586 6.183360 CGGGACACAGTGAAATAAAATAGGAC 60.183 42.308 7.81 0.00 0.00 3.85
2547 2587 6.183360 GGGACACAGTGAAATAAAATAGGACG 60.183 42.308 7.81 0.00 0.00 4.79
2548 2588 6.592607 GGACACAGTGAAATAAAATAGGACGA 59.407 38.462 7.81 0.00 0.00 4.20
2549 2589 7.201530 GGACACAGTGAAATAAAATAGGACGAG 60.202 40.741 7.81 0.00 0.00 4.18
2550 2590 7.159372 ACACAGTGAAATAAAATAGGACGAGT 58.841 34.615 7.81 0.00 0.00 4.18
2551 2591 7.331193 ACACAGTGAAATAAAATAGGACGAGTC 59.669 37.037 7.81 0.00 0.00 3.36
2561 2601 4.803426 GACGAGTCCAGCTGGCGG 62.803 72.222 28.91 19.98 34.44 6.13
2600 2640 4.735132 CGAGCGGCCGGACAGAAA 62.735 66.667 29.38 0.00 0.00 2.52
2601 2641 2.358247 GAGCGGCCGGACAGAAAA 60.358 61.111 29.38 0.00 0.00 2.29
2602 2642 2.358737 AGCGGCCGGACAGAAAAG 60.359 61.111 29.38 0.00 0.00 2.27
2603 2643 2.358247 GCGGCCGGACAGAAAAGA 60.358 61.111 29.38 0.00 0.00 2.52
2604 2644 1.964373 GCGGCCGGACAGAAAAGAA 60.964 57.895 29.38 0.00 0.00 2.52
2605 2645 1.512156 GCGGCCGGACAGAAAAGAAA 61.512 55.000 29.38 0.00 0.00 2.52
2606 2646 0.948678 CGGCCGGACAGAAAAGAAAA 59.051 50.000 20.10 0.00 0.00 2.29
2607 2647 1.335496 CGGCCGGACAGAAAAGAAAAA 59.665 47.619 20.10 0.00 0.00 1.94
2608 2648 2.030274 CGGCCGGACAGAAAAGAAAAAT 60.030 45.455 20.10 0.00 0.00 1.82
2609 2649 3.552068 CGGCCGGACAGAAAAGAAAAATT 60.552 43.478 20.10 0.00 0.00 1.82
2610 2650 4.377021 GGCCGGACAGAAAAGAAAAATTT 58.623 39.130 5.05 0.00 0.00 1.82
2611 2651 5.534407 GGCCGGACAGAAAAGAAAAATTTA 58.466 37.500 5.05 0.00 0.00 1.40
2612 2652 6.163476 GGCCGGACAGAAAAGAAAAATTTAT 58.837 36.000 5.05 0.00 0.00 1.40
2613 2653 6.090763 GGCCGGACAGAAAAGAAAAATTTATG 59.909 38.462 5.05 0.00 35.64 1.90
2614 2654 6.645003 GCCGGACAGAAAAGAAAAATTTATGT 59.355 34.615 5.05 0.00 42.87 2.29
2618 2658 8.534333 GACAGAAAAGAAAAATTTATGTCCCC 57.466 34.615 13.07 0.00 45.95 4.81
2619 2659 8.028652 ACAGAAAAGAAAAATTTATGTCCCCA 57.971 30.769 0.00 0.00 37.59 4.96
2620 2660 8.150296 ACAGAAAAGAAAAATTTATGTCCCCAG 58.850 33.333 0.00 0.00 37.59 4.45
2621 2661 8.150296 CAGAAAAGAAAAATTTATGTCCCCAGT 58.850 33.333 0.00 0.00 0.00 4.00
2622 2662 8.713971 AGAAAAGAAAAATTTATGTCCCCAGTT 58.286 29.630 0.00 0.00 0.00 3.16
2623 2663 8.902540 AAAAGAAAAATTTATGTCCCCAGTTC 57.097 30.769 0.00 0.00 0.00 3.01
2624 2664 6.605471 AGAAAAATTTATGTCCCCAGTTCC 57.395 37.500 0.00 0.00 0.00 3.62
2625 2665 5.483937 AGAAAAATTTATGTCCCCAGTTCCC 59.516 40.000 0.00 0.00 0.00 3.97
2626 2666 3.398318 AATTTATGTCCCCAGTTCCCC 57.602 47.619 0.00 0.00 0.00 4.81
2627 2667 1.761711 TTTATGTCCCCAGTTCCCCA 58.238 50.000 0.00 0.00 0.00 4.96
2628 2668 1.761711 TTATGTCCCCAGTTCCCCAA 58.238 50.000 0.00 0.00 0.00 4.12
2629 2669 1.761711 TATGTCCCCAGTTCCCCAAA 58.238 50.000 0.00 0.00 0.00 3.28
2630 2670 0.863956 ATGTCCCCAGTTCCCCAAAA 59.136 50.000 0.00 0.00 0.00 2.44
2631 2671 0.187361 TGTCCCCAGTTCCCCAAAAG 59.813 55.000 0.00 0.00 0.00 2.27
2632 2672 0.541998 GTCCCCAGTTCCCCAAAAGG 60.542 60.000 0.00 0.00 0.00 3.11
2633 2673 0.703056 TCCCCAGTTCCCCAAAAGGA 60.703 55.000 0.00 0.00 38.24 3.36
2634 2674 0.189822 CCCCAGTTCCCCAAAAGGAA 59.810 55.000 0.00 0.00 43.77 3.36
2648 2688 4.319133 GGAAAGCATCCTTCCGCA 57.681 55.556 1.50 0.00 45.56 5.69
2649 2689 2.566824 GGAAAGCATCCTTCCGCAA 58.433 52.632 1.50 0.00 45.56 4.85
2650 2690 0.887933 GGAAAGCATCCTTCCGCAAA 59.112 50.000 1.50 0.00 45.56 3.68
2651 2691 1.272212 GGAAAGCATCCTTCCGCAAAA 59.728 47.619 1.50 0.00 45.56 2.44
2652 2692 2.328473 GAAAGCATCCTTCCGCAAAAC 58.672 47.619 0.00 0.00 0.00 2.43
2653 2693 0.603065 AAGCATCCTTCCGCAAAACC 59.397 50.000 0.00 0.00 0.00 3.27
2654 2694 1.215382 GCATCCTTCCGCAAAACCC 59.785 57.895 0.00 0.00 0.00 4.11
2655 2695 1.531739 GCATCCTTCCGCAAAACCCA 61.532 55.000 0.00 0.00 0.00 4.51
2656 2696 0.243636 CATCCTTCCGCAAAACCCAC 59.756 55.000 0.00 0.00 0.00 4.61
2657 2697 1.241315 ATCCTTCCGCAAAACCCACG 61.241 55.000 0.00 0.00 0.00 4.94
2658 2698 1.894756 CCTTCCGCAAAACCCACGA 60.895 57.895 0.00 0.00 0.00 4.35
2659 2699 1.448922 CCTTCCGCAAAACCCACGAA 61.449 55.000 0.00 0.00 0.00 3.85
2660 2700 0.317519 CTTCCGCAAAACCCACGAAC 60.318 55.000 0.00 0.00 0.00 3.95
2661 2701 1.030488 TTCCGCAAAACCCACGAACA 61.030 50.000 0.00 0.00 0.00 3.18
2662 2702 1.008995 CCGCAAAACCCACGAACAG 60.009 57.895 0.00 0.00 0.00 3.16
2663 2703 1.440938 CCGCAAAACCCACGAACAGA 61.441 55.000 0.00 0.00 0.00 3.41
2664 2704 0.378962 CGCAAAACCCACGAACAGAA 59.621 50.000 0.00 0.00 0.00 3.02
2665 2705 1.202200 CGCAAAACCCACGAACAGAAA 60.202 47.619 0.00 0.00 0.00 2.52
2666 2706 2.459934 GCAAAACCCACGAACAGAAAG 58.540 47.619 0.00 0.00 0.00 2.62
2667 2707 2.098443 GCAAAACCCACGAACAGAAAGA 59.902 45.455 0.00 0.00 0.00 2.52
2668 2708 3.792124 GCAAAACCCACGAACAGAAAGAG 60.792 47.826 0.00 0.00 0.00 2.85
2669 2709 3.553828 AAACCCACGAACAGAAAGAGA 57.446 42.857 0.00 0.00 0.00 3.10
2670 2710 3.553828 AACCCACGAACAGAAAGAGAA 57.446 42.857 0.00 0.00 0.00 2.87
2671 2711 3.553828 ACCCACGAACAGAAAGAGAAA 57.446 42.857 0.00 0.00 0.00 2.52
2672 2712 4.086706 ACCCACGAACAGAAAGAGAAAT 57.913 40.909 0.00 0.00 0.00 2.17
2673 2713 4.461198 ACCCACGAACAGAAAGAGAAATT 58.539 39.130 0.00 0.00 0.00 1.82
2674 2714 4.515567 ACCCACGAACAGAAAGAGAAATTC 59.484 41.667 0.00 0.00 0.00 2.17
2675 2715 4.515191 CCCACGAACAGAAAGAGAAATTCA 59.485 41.667 0.00 0.00 0.00 2.57
2676 2716 5.008613 CCCACGAACAGAAAGAGAAATTCAA 59.991 40.000 0.00 0.00 0.00 2.69
2677 2717 6.138761 CCACGAACAGAAAGAGAAATTCAAG 58.861 40.000 0.00 0.00 0.00 3.02
2678 2718 6.138761 CACGAACAGAAAGAGAAATTCAAGG 58.861 40.000 0.00 0.00 0.00 3.61
2679 2719 5.149977 CGAACAGAAAGAGAAATTCAAGGC 58.850 41.667 0.00 0.00 0.00 4.35
2680 2720 5.459536 AACAGAAAGAGAAATTCAAGGCC 57.540 39.130 0.00 0.00 0.00 5.19
2681 2721 4.734266 ACAGAAAGAGAAATTCAAGGCCT 58.266 39.130 0.00 0.00 0.00 5.19
2682 2722 5.880901 ACAGAAAGAGAAATTCAAGGCCTA 58.119 37.500 5.16 0.00 0.00 3.93
2683 2723 5.942826 ACAGAAAGAGAAATTCAAGGCCTAG 59.057 40.000 5.16 0.00 0.00 3.02
2684 2724 5.942826 CAGAAAGAGAAATTCAAGGCCTAGT 59.057 40.000 5.16 0.00 0.00 2.57
2685 2725 6.093357 CAGAAAGAGAAATTCAAGGCCTAGTC 59.907 42.308 5.16 0.00 0.00 2.59
2686 2726 4.130286 AGAGAAATTCAAGGCCTAGTCG 57.870 45.455 5.16 0.00 0.00 4.18
2687 2727 2.609916 GAGAAATTCAAGGCCTAGTCGC 59.390 50.000 5.16 0.00 0.00 5.19
2688 2728 2.237392 AGAAATTCAAGGCCTAGTCGCT 59.763 45.455 5.16 0.00 0.00 4.93
2689 2729 3.451178 AGAAATTCAAGGCCTAGTCGCTA 59.549 43.478 5.16 0.00 0.00 4.26
2690 2730 4.101741 AGAAATTCAAGGCCTAGTCGCTAT 59.898 41.667 5.16 0.00 0.00 2.97
2691 2731 3.669251 ATTCAAGGCCTAGTCGCTATC 57.331 47.619 5.16 0.00 0.00 2.08
2692 2732 2.067365 TCAAGGCCTAGTCGCTATCA 57.933 50.000 5.16 0.00 0.00 2.15
2693 2733 1.681793 TCAAGGCCTAGTCGCTATCAC 59.318 52.381 5.16 0.00 0.00 3.06
2694 2734 0.669077 AAGGCCTAGTCGCTATCACG 59.331 55.000 5.16 0.00 0.00 4.35
2695 2735 0.465824 AGGCCTAGTCGCTATCACGT 60.466 55.000 1.29 0.00 0.00 4.49
2696 2736 0.317938 GGCCTAGTCGCTATCACGTG 60.318 60.000 9.94 9.94 0.00 4.49
2697 2737 0.661552 GCCTAGTCGCTATCACGTGA 59.338 55.000 22.48 22.48 0.00 4.35
2698 2738 1.597445 GCCTAGTCGCTATCACGTGAC 60.597 57.143 22.71 7.62 43.03 3.67
2699 2739 1.002684 CCTAGTCGCTATCACGTGACC 60.003 57.143 22.71 11.32 43.57 4.02
2700 2740 1.002684 CTAGTCGCTATCACGTGACCC 60.003 57.143 22.71 10.94 43.57 4.46
2701 2741 0.963856 AGTCGCTATCACGTGACCCA 60.964 55.000 22.71 8.29 43.57 4.51
2702 2742 0.801067 GTCGCTATCACGTGACCCAC 60.801 60.000 22.71 9.89 38.22 4.61
2703 2743 0.963856 TCGCTATCACGTGACCCACT 60.964 55.000 22.71 7.17 31.34 4.00
2704 2744 0.736636 CGCTATCACGTGACCCACTA 59.263 55.000 22.71 8.05 31.34 2.74
2705 2745 1.533338 CGCTATCACGTGACCCACTAC 60.533 57.143 22.71 5.49 31.34 2.73
2706 2746 1.202382 GCTATCACGTGACCCACTACC 60.202 57.143 22.71 0.00 31.34 3.18
2707 2747 1.407979 CTATCACGTGACCCACTACCC 59.592 57.143 22.71 0.00 31.34 3.69
2708 2748 0.252103 ATCACGTGACCCACTACCCT 60.252 55.000 22.71 0.00 31.34 4.34
2709 2749 0.405198 TCACGTGACCCACTACCCTA 59.595 55.000 15.76 0.00 31.34 3.53
2710 2750 0.529378 CACGTGACCCACTACCCTAC 59.471 60.000 10.90 0.00 31.34 3.18
2711 2751 0.112995 ACGTGACCCACTACCCTACA 59.887 55.000 0.00 0.00 31.34 2.74
2712 2752 0.815734 CGTGACCCACTACCCTACAG 59.184 60.000 0.00 0.00 31.34 2.74
2713 2753 1.615116 CGTGACCCACTACCCTACAGA 60.615 57.143 0.00 0.00 31.34 3.41
2714 2754 2.748388 GTGACCCACTACCCTACAGAT 58.252 52.381 0.00 0.00 0.00 2.90
2715 2755 2.431057 GTGACCCACTACCCTACAGATG 59.569 54.545 0.00 0.00 0.00 2.90
2716 2756 1.413077 GACCCACTACCCTACAGATGC 59.587 57.143 0.00 0.00 0.00 3.91
2717 2757 0.759346 CCCACTACCCTACAGATGCC 59.241 60.000 0.00 0.00 0.00 4.40
2718 2758 1.692762 CCCACTACCCTACAGATGCCT 60.693 57.143 0.00 0.00 0.00 4.75
2719 2759 2.119495 CCACTACCCTACAGATGCCTT 58.881 52.381 0.00 0.00 0.00 4.35
2720 2760 2.103263 CCACTACCCTACAGATGCCTTC 59.897 54.545 0.00 0.00 0.00 3.46
2721 2761 3.034635 CACTACCCTACAGATGCCTTCT 58.965 50.000 0.00 0.00 33.90 2.85
2722 2762 4.215908 CACTACCCTACAGATGCCTTCTA 58.784 47.826 0.00 0.00 31.77 2.10
2723 2763 4.038162 CACTACCCTACAGATGCCTTCTAC 59.962 50.000 0.00 0.00 31.77 2.59
2724 2764 2.032620 ACCCTACAGATGCCTTCTACG 58.967 52.381 0.00 0.00 31.77 3.51
2725 2765 1.269831 CCCTACAGATGCCTTCTACGC 60.270 57.143 0.00 0.00 31.77 4.42
2726 2766 1.269831 CCTACAGATGCCTTCTACGCC 60.270 57.143 0.00 0.00 31.77 5.68
2727 2767 1.683917 CTACAGATGCCTTCTACGCCT 59.316 52.381 0.00 0.00 31.77 5.52
2728 2768 0.905357 ACAGATGCCTTCTACGCCTT 59.095 50.000 0.00 0.00 31.77 4.35
2729 2769 1.134670 ACAGATGCCTTCTACGCCTTC 60.135 52.381 0.00 0.00 31.77 3.46
2730 2770 0.466124 AGATGCCTTCTACGCCTTCC 59.534 55.000 0.00 0.00 30.96 3.46
2731 2771 0.466124 GATGCCTTCTACGCCTTCCT 59.534 55.000 0.00 0.00 0.00 3.36
2732 2772 0.466124 ATGCCTTCTACGCCTTCCTC 59.534 55.000 0.00 0.00 0.00 3.71
2733 2773 1.227002 GCCTTCTACGCCTTCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
2734 2774 1.227002 CCTTCTACGCCTTCCTCGC 60.227 63.158 0.00 0.00 0.00 5.03
2735 2775 1.668101 CCTTCTACGCCTTCCTCGCT 61.668 60.000 0.00 0.00 0.00 4.93
2736 2776 0.248702 CTTCTACGCCTTCCTCGCTC 60.249 60.000 0.00 0.00 0.00 5.03
2737 2777 0.963856 TTCTACGCCTTCCTCGCTCA 60.964 55.000 0.00 0.00 0.00 4.26
2738 2778 1.226717 CTACGCCTTCCTCGCTCAC 60.227 63.158 0.00 0.00 0.00 3.51
2739 2779 1.934220 CTACGCCTTCCTCGCTCACA 61.934 60.000 0.00 0.00 0.00 3.58
2740 2780 2.209064 TACGCCTTCCTCGCTCACAC 62.209 60.000 0.00 0.00 0.00 3.82
2741 2781 2.659610 GCCTTCCTCGCTCACACT 59.340 61.111 0.00 0.00 0.00 3.55
2742 2782 1.004440 GCCTTCCTCGCTCACACTT 60.004 57.895 0.00 0.00 0.00 3.16
2743 2783 1.016653 GCCTTCCTCGCTCACACTTC 61.017 60.000 0.00 0.00 0.00 3.01
2744 2784 0.390472 CCTTCCTCGCTCACACTTCC 60.390 60.000 0.00 0.00 0.00 3.46
2745 2785 0.605589 CTTCCTCGCTCACACTTCCT 59.394 55.000 0.00 0.00 0.00 3.36
2746 2786 0.603569 TTCCTCGCTCACACTTCCTC 59.396 55.000 0.00 0.00 0.00 3.71
2747 2787 1.216710 CCTCGCTCACACTTCCTCC 59.783 63.158 0.00 0.00 0.00 4.30
2748 2788 1.254284 CCTCGCTCACACTTCCTCCT 61.254 60.000 0.00 0.00 0.00 3.69
2749 2789 0.108898 CTCGCTCACACTTCCTCCTG 60.109 60.000 0.00 0.00 0.00 3.86
2750 2790 1.739562 CGCTCACACTTCCTCCTGC 60.740 63.158 0.00 0.00 0.00 4.85
2751 2791 1.372683 GCTCACACTTCCTCCTGCA 59.627 57.895 0.00 0.00 0.00 4.41
2752 2792 0.952984 GCTCACACTTCCTCCTGCAC 60.953 60.000 0.00 0.00 0.00 4.57
2753 2793 0.668706 CTCACACTTCCTCCTGCACG 60.669 60.000 0.00 0.00 0.00 5.34
2754 2794 1.669115 CACACTTCCTCCTGCACGG 60.669 63.158 0.00 0.00 0.00 4.94
2755 2795 2.743928 CACTTCCTCCTGCACGGC 60.744 66.667 0.00 0.00 0.00 5.68
2756 2796 4.379243 ACTTCCTCCTGCACGGCG 62.379 66.667 4.80 4.80 0.00 6.46
2757 2797 4.379243 CTTCCTCCTGCACGGCGT 62.379 66.667 6.77 6.77 0.00 5.68
2758 2798 4.373116 TTCCTCCTGCACGGCGTC 62.373 66.667 10.85 6.01 0.00 5.19
2770 2810 2.509561 GGCGTCGCCTTCTTCTCC 60.510 66.667 28.98 0.00 46.69 3.71
2771 2811 2.261671 GCGTCGCCTTCTTCTCCA 59.738 61.111 5.75 0.00 0.00 3.86
2772 2812 1.153549 GCGTCGCCTTCTTCTCCAT 60.154 57.895 5.75 0.00 0.00 3.41
2780 2820 5.298777 GTCGCCTTCTTCTCCATACTAGTAA 59.701 44.000 6.70 0.00 0.00 2.24
2828 2868 5.373854 AGATAAGCCCATTAATCCCAGTTCT 59.626 40.000 0.00 0.00 0.00 3.01
2833 2873 4.796606 CCCATTAATCCCAGTTCTGTCAT 58.203 43.478 0.00 0.00 0.00 3.06
2834 2874 5.690097 GCCCATTAATCCCAGTTCTGTCATA 60.690 44.000 0.00 0.00 0.00 2.15
2844 2884 2.635915 AGTTCTGTCATAAACCGGGACA 59.364 45.455 6.32 8.44 39.09 4.02
2850 2961 1.065053 TCATAAACCGGGACACATGGG 60.065 52.381 6.32 0.00 0.00 4.00
2867 2978 2.754254 GCCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
2871 2982 1.004320 CATTGGTCCCGGTTCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
2873 2984 2.180159 ATTGGTCCCGGTTCGTGAGG 62.180 60.000 0.00 0.00 0.00 3.86
2875 2986 4.754667 GTCCCGGTTCGTGAGGCC 62.755 72.222 0.00 0.00 0.00 5.19
2877 2988 4.760047 CCCGGTTCGTGAGGCCAG 62.760 72.222 5.01 0.00 0.00 4.85
2878 2989 4.760047 CCGGTTCGTGAGGCCAGG 62.760 72.222 5.01 0.00 0.00 4.45
2879 2990 4.760047 CGGTTCGTGAGGCCAGGG 62.760 72.222 5.01 0.00 0.00 4.45
2902 3014 1.612146 TGTCGGGCCTCAATCCTGA 60.612 57.895 0.84 0.00 36.68 3.86
3022 3134 2.400467 ATACCCCCTCGCATAAGAGT 57.600 50.000 0.00 0.00 36.56 3.24
3059 3172 1.760479 TTTTTCAGGCCGACGAGGGA 61.760 55.000 0.00 0.00 41.48 4.20
3076 3189 0.895559 GGAAGAGGGCTTTGTGGTGG 60.896 60.000 0.00 0.00 33.61 4.61
3081 3194 1.073284 GAGGGCTTTGTGGTGGTCTAA 59.927 52.381 0.00 0.00 0.00 2.10
3194 3307 4.942761 TGTCTAGGTTTAACGGTCTGTT 57.057 40.909 1.93 1.93 44.78 3.16
3272 3385 2.743928 CCGTGGTGAGCCTCTTGC 60.744 66.667 0.00 0.00 41.71 4.01
3425 3542 2.605823 CCTCGTCCTGTCTATGATTCGC 60.606 54.545 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 109 2.902423 TAATCCATGCCGTGGGTGCC 62.902 60.000 2.44 0.00 41.83 5.01
195 202 6.539324 TCGCATAAACTTATTTTTCGTCCAG 58.461 36.000 0.00 0.00 0.00 3.86
197 204 5.451342 GCTCGCATAAACTTATTTTTCGTCC 59.549 40.000 0.00 0.00 0.00 4.79
208 215 3.619233 AAAACACGCTCGCATAAACTT 57.381 38.095 0.00 0.00 0.00 2.66
231 238 6.621596 GCTTGGTCTGACATTCATTCAGTTAC 60.622 42.308 10.38 0.00 41.22 2.50
342 350 2.413796 TCGGCGTGTTAATTGTGATGTC 59.586 45.455 6.85 0.00 0.00 3.06
358 366 2.241722 CAGTAAGCATGTTTTTCGGCG 58.758 47.619 0.00 0.00 0.00 6.46
393 411 2.543653 GCATTGGTGTCCAGTGAAACAC 60.544 50.000 16.20 16.20 42.72 3.32
444 462 1.153005 GATTGCTGGCCAGAGGAGG 60.153 63.158 37.21 10.35 0.00 4.30
519 537 1.874231 CTCATCTGACATGCTCCATGC 59.126 52.381 5.19 0.17 44.80 4.06
520 538 2.872858 CACTCATCTGACATGCTCCATG 59.127 50.000 3.80 3.80 46.18 3.66
521 539 2.504585 ACACTCATCTGACATGCTCCAT 59.495 45.455 0.00 0.00 0.00 3.41
522 540 1.904537 ACACTCATCTGACATGCTCCA 59.095 47.619 0.00 0.00 0.00 3.86
523 541 2.687700 ACACTCATCTGACATGCTCC 57.312 50.000 0.00 0.00 0.00 4.70
525 543 4.465660 AGTCTTACACTCATCTGACATGCT 59.534 41.667 0.00 0.00 0.00 3.79
526 544 4.753233 AGTCTTACACTCATCTGACATGC 58.247 43.478 0.00 0.00 0.00 4.06
527 545 6.856895 TGTAGTCTTACACTCATCTGACATG 58.143 40.000 0.00 0.00 34.91 3.21
528 546 7.487484 CATGTAGTCTTACACTCATCTGACAT 58.513 38.462 0.00 0.00 42.29 3.06
529 547 6.625960 GCATGTAGTCTTACACTCATCTGACA 60.626 42.308 0.00 0.00 42.29 3.58
530 548 5.746245 GCATGTAGTCTTACACTCATCTGAC 59.254 44.000 0.00 0.00 42.29 3.51
531 549 5.418840 TGCATGTAGTCTTACACTCATCTGA 59.581 40.000 0.00 0.00 42.29 3.27
532 550 5.654497 TGCATGTAGTCTTACACTCATCTG 58.346 41.667 0.00 0.00 42.29 2.90
533 551 5.420421 ACTGCATGTAGTCTTACACTCATCT 59.580 40.000 11.03 0.00 42.29 2.90
534 552 5.655488 ACTGCATGTAGTCTTACACTCATC 58.345 41.667 11.03 0.00 42.29 2.92
535 553 5.394663 GGACTGCATGTAGTCTTACACTCAT 60.395 44.000 33.61 3.18 45.03 2.90
536 554 4.082190 GGACTGCATGTAGTCTTACACTCA 60.082 45.833 33.61 2.71 45.03 3.41
537 555 4.158764 AGGACTGCATGTAGTCTTACACTC 59.841 45.833 33.61 20.03 45.03 3.51
538 556 4.090090 AGGACTGCATGTAGTCTTACACT 58.910 43.478 33.61 22.72 45.03 3.55
539 557 4.425520 GAGGACTGCATGTAGTCTTACAC 58.574 47.826 33.61 21.20 45.03 2.90
540 558 3.447586 GGAGGACTGCATGTAGTCTTACA 59.552 47.826 33.61 4.75 45.03 2.41
541 559 3.702045 AGGAGGACTGCATGTAGTCTTAC 59.298 47.826 33.61 29.44 45.03 2.34
542 560 3.701542 CAGGAGGACTGCATGTAGTCTTA 59.298 47.826 33.61 0.00 45.03 2.10
543 561 2.499289 CAGGAGGACTGCATGTAGTCTT 59.501 50.000 33.61 29.61 45.03 3.01
544 562 2.106566 CAGGAGGACTGCATGTAGTCT 58.893 52.381 33.61 23.20 45.03 3.24
545 563 2.593346 CAGGAGGACTGCATGTAGTC 57.407 55.000 29.57 29.57 44.96 2.59
555 573 1.067295 TCAAACCATGCAGGAGGACT 58.933 50.000 0.00 0.00 41.22 3.85
556 574 1.909700 TTCAAACCATGCAGGAGGAC 58.090 50.000 0.00 0.00 41.22 3.85
557 575 2.673775 TTTCAAACCATGCAGGAGGA 57.326 45.000 0.00 0.00 41.22 3.71
558 576 3.749665 TTTTTCAAACCATGCAGGAGG 57.250 42.857 0.00 0.00 41.22 4.30
579 597 9.618890 TCGATTAAAAGAGGAATTCATCTTCAT 57.381 29.630 29.60 23.62 44.98 2.57
580 598 9.448438 TTCGATTAAAAGAGGAATTCATCTTCA 57.552 29.630 29.60 19.84 44.98 3.02
581 599 9.928236 CTTCGATTAAAAGAGGAATTCATCTTC 57.072 33.333 29.60 18.55 44.98 2.87
583 601 7.012799 GGCTTCGATTAAAAGAGGAATTCATCT 59.987 37.037 16.63 16.63 38.83 2.90
584 602 7.135467 GGCTTCGATTAAAAGAGGAATTCATC 58.865 38.462 12.13 12.13 0.00 2.92
585 603 6.238484 CGGCTTCGATTAAAAGAGGAATTCAT 60.238 38.462 7.93 0.00 35.61 2.57
586 604 5.064707 CGGCTTCGATTAAAAGAGGAATTCA 59.935 40.000 7.93 0.00 35.61 2.57
587 605 5.502606 CGGCTTCGATTAAAAGAGGAATTC 58.497 41.667 0.00 0.00 35.61 2.17
588 606 4.335594 CCGGCTTCGATTAAAAGAGGAATT 59.664 41.667 0.00 0.00 35.61 2.17
589 607 3.877508 CCGGCTTCGATTAAAAGAGGAAT 59.122 43.478 0.00 0.00 35.61 3.01
590 608 3.055675 TCCGGCTTCGATTAAAAGAGGAA 60.056 43.478 0.00 0.00 32.70 3.36
591 609 2.498481 TCCGGCTTCGATTAAAAGAGGA 59.502 45.455 0.00 0.00 35.61 3.71
592 610 2.901249 TCCGGCTTCGATTAAAAGAGG 58.099 47.619 0.00 0.00 35.61 3.69
593 611 3.242446 GCTTCCGGCTTCGATTAAAAGAG 60.242 47.826 0.00 0.00 38.06 2.85
594 612 2.676342 GCTTCCGGCTTCGATTAAAAGA 59.324 45.455 0.00 0.00 38.06 2.52
595 613 3.052940 GCTTCCGGCTTCGATTAAAAG 57.947 47.619 0.00 0.00 38.06 2.27
607 625 4.522722 ACTACAATCTATAGCTTCCGGC 57.477 45.455 0.00 0.00 42.19 6.13
608 626 7.216973 AGTTACTACAATCTATAGCTTCCGG 57.783 40.000 0.00 0.00 0.00 5.14
609 627 9.001542 ACTAGTTACTACAATCTATAGCTTCCG 57.998 37.037 0.00 0.00 0.00 4.30
618 636 9.726232 CATGCGTTAACTAGTTACTACAATCTA 57.274 33.333 14.96 0.00 0.00 1.98
619 637 7.705325 CCATGCGTTAACTAGTTACTACAATCT 59.295 37.037 14.96 0.00 0.00 2.40
620 638 7.042925 CCCATGCGTTAACTAGTTACTACAATC 60.043 40.741 14.96 5.07 0.00 2.67
621 639 6.759827 CCCATGCGTTAACTAGTTACTACAAT 59.240 38.462 14.96 5.98 0.00 2.71
622 640 6.071447 TCCCATGCGTTAACTAGTTACTACAA 60.071 38.462 14.96 0.00 0.00 2.41
623 641 5.418524 TCCCATGCGTTAACTAGTTACTACA 59.581 40.000 14.96 12.70 0.00 2.74
624 642 5.745769 GTCCCATGCGTTAACTAGTTACTAC 59.254 44.000 14.96 10.56 0.00 2.73
625 643 5.418524 TGTCCCATGCGTTAACTAGTTACTA 59.581 40.000 14.96 0.00 0.00 1.82
626 644 4.221262 TGTCCCATGCGTTAACTAGTTACT 59.779 41.667 14.96 0.00 0.00 2.24
627 645 4.497300 TGTCCCATGCGTTAACTAGTTAC 58.503 43.478 14.96 9.40 0.00 2.50
628 646 4.804868 TGTCCCATGCGTTAACTAGTTA 57.195 40.909 11.38 11.38 0.00 2.24
629 647 3.688694 TGTCCCATGCGTTAACTAGTT 57.311 42.857 13.68 13.68 0.00 2.24
630 648 3.055385 ACATGTCCCATGCGTTAACTAGT 60.055 43.478 3.71 0.00 0.00 2.57
631 649 3.309682 CACATGTCCCATGCGTTAACTAG 59.690 47.826 3.71 0.00 0.00 2.57
632 650 3.266636 CACATGTCCCATGCGTTAACTA 58.733 45.455 3.71 0.00 0.00 2.24
633 651 2.083774 CACATGTCCCATGCGTTAACT 58.916 47.619 3.71 0.00 0.00 2.24
634 652 1.132262 CCACATGTCCCATGCGTTAAC 59.868 52.381 0.00 0.00 0.00 2.01
635 653 1.271652 ACCACATGTCCCATGCGTTAA 60.272 47.619 0.00 0.00 0.00 2.01
636 654 0.326595 ACCACATGTCCCATGCGTTA 59.673 50.000 0.00 0.00 0.00 3.18
637 655 0.539438 AACCACATGTCCCATGCGTT 60.539 50.000 0.00 4.71 0.00 4.84
638 656 0.326595 TAACCACATGTCCCATGCGT 59.673 50.000 0.00 0.00 0.00 5.24
639 657 1.679139 ATAACCACATGTCCCATGCG 58.321 50.000 0.00 0.00 0.00 4.73
640 658 5.560724 AGTATATAACCACATGTCCCATGC 58.439 41.667 0.00 0.00 0.00 4.06
641 659 6.173339 GGAGTATATAACCACATGTCCCATG 58.827 44.000 0.00 2.77 0.00 3.66
642 660 5.250774 GGGAGTATATAACCACATGTCCCAT 59.749 44.000 0.00 0.00 40.84 4.00
643 661 4.595781 GGGAGTATATAACCACATGTCCCA 59.404 45.833 0.00 0.00 40.84 4.37
644 662 4.844655 AGGGAGTATATAACCACATGTCCC 59.155 45.833 0.00 0.00 41.38 4.46
645 663 5.780793 AGAGGGAGTATATAACCACATGTCC 59.219 44.000 0.00 0.00 0.00 4.02
646 664 6.267928 ACAGAGGGAGTATATAACCACATGTC 59.732 42.308 0.00 0.00 0.00 3.06
647 665 6.143915 ACAGAGGGAGTATATAACCACATGT 58.856 40.000 0.00 0.00 0.00 3.21
648 666 6.672266 ACAGAGGGAGTATATAACCACATG 57.328 41.667 8.76 0.00 0.00 3.21
649 667 8.177456 TGATACAGAGGGAGTATATAACCACAT 58.823 37.037 8.76 0.00 32.60 3.21
650 668 7.450634 GTGATACAGAGGGAGTATATAACCACA 59.549 40.741 8.76 0.00 32.60 4.17
651 669 7.450634 TGTGATACAGAGGGAGTATATAACCAC 59.549 40.741 8.76 0.00 32.60 4.16
652 670 7.532199 TGTGATACAGAGGGAGTATATAACCA 58.468 38.462 8.76 0.00 32.60 3.67
653 671 8.418597 TTGTGATACAGAGGGAGTATATAACC 57.581 38.462 0.00 0.00 32.60 2.85
657 675 9.830186 AAGTATTGTGATACAGAGGGAGTATAT 57.170 33.333 0.07 0.00 40.51 0.86
658 676 9.078990 CAAGTATTGTGATACAGAGGGAGTATA 57.921 37.037 0.07 0.00 42.34 1.47
659 677 7.957002 CAAGTATTGTGATACAGAGGGAGTAT 58.043 38.462 0.07 0.00 42.34 2.12
660 678 7.348080 CAAGTATTGTGATACAGAGGGAGTA 57.652 40.000 0.07 0.00 42.34 2.59
661 679 6.227298 CAAGTATTGTGATACAGAGGGAGT 57.773 41.667 0.07 0.00 42.34 3.85
677 695 7.982354 GTCTTAGTTCATCCAGCTACAAGTATT 59.018 37.037 0.00 0.00 0.00 1.89
678 696 7.343316 AGTCTTAGTTCATCCAGCTACAAGTAT 59.657 37.037 0.00 0.00 0.00 2.12
679 697 6.663953 AGTCTTAGTTCATCCAGCTACAAGTA 59.336 38.462 0.00 0.00 0.00 2.24
680 698 5.482175 AGTCTTAGTTCATCCAGCTACAAGT 59.518 40.000 0.00 0.00 0.00 3.16
681 699 5.971763 AGTCTTAGTTCATCCAGCTACAAG 58.028 41.667 0.00 0.00 0.00 3.16
682 700 5.393135 CGAGTCTTAGTTCATCCAGCTACAA 60.393 44.000 0.00 0.00 0.00 2.41
683 701 4.096532 CGAGTCTTAGTTCATCCAGCTACA 59.903 45.833 0.00 0.00 0.00 2.74
684 702 4.335874 TCGAGTCTTAGTTCATCCAGCTAC 59.664 45.833 0.00 0.00 0.00 3.58
685 703 4.524053 TCGAGTCTTAGTTCATCCAGCTA 58.476 43.478 0.00 0.00 0.00 3.32
686 704 3.357203 TCGAGTCTTAGTTCATCCAGCT 58.643 45.455 0.00 0.00 0.00 4.24
687 705 3.784701 TCGAGTCTTAGTTCATCCAGC 57.215 47.619 0.00 0.00 0.00 4.85
688 706 9.400638 GTTATAATCGAGTCTTAGTTCATCCAG 57.599 37.037 0.00 0.00 0.00 3.86
689 707 9.132923 AGTTATAATCGAGTCTTAGTTCATCCA 57.867 33.333 0.00 0.00 0.00 3.41
721 739 7.123697 CCGGGAAATTTAAGGAGTTTTATTCCT 59.876 37.037 0.00 0.00 46.97 3.36
722 740 7.262772 CCGGGAAATTTAAGGAGTTTTATTCC 58.737 38.462 0.00 0.00 34.83 3.01
723 741 7.262772 CCCGGGAAATTTAAGGAGTTTTATTC 58.737 38.462 18.48 0.00 0.00 1.75
724 742 6.155565 CCCCGGGAAATTTAAGGAGTTTTATT 59.844 38.462 26.32 0.00 0.00 1.40
725 743 5.659525 CCCCGGGAAATTTAAGGAGTTTTAT 59.340 40.000 26.32 0.00 0.00 1.40
726 744 5.018149 CCCCGGGAAATTTAAGGAGTTTTA 58.982 41.667 26.32 0.00 0.00 1.52
727 745 3.835978 CCCCGGGAAATTTAAGGAGTTTT 59.164 43.478 26.32 0.00 0.00 2.43
728 746 3.076333 TCCCCGGGAAATTTAAGGAGTTT 59.924 43.478 26.32 0.00 0.00 2.66
729 747 2.650827 TCCCCGGGAAATTTAAGGAGTT 59.349 45.455 26.32 0.00 0.00 3.01
730 748 2.281034 TCCCCGGGAAATTTAAGGAGT 58.719 47.619 26.32 0.00 0.00 3.85
731 749 3.375647 TTCCCCGGGAAATTTAAGGAG 57.624 47.619 26.32 0.00 38.93 3.69
732 750 3.829728 TTTCCCCGGGAAATTTAAGGA 57.170 42.857 25.42 3.66 45.42 3.36
751 769 1.602377 GCAGTCAGCCGTACAGTTTTT 59.398 47.619 0.00 0.00 37.23 1.94
752 770 1.226746 GCAGTCAGCCGTACAGTTTT 58.773 50.000 0.00 0.00 37.23 2.43
753 771 2.914379 GCAGTCAGCCGTACAGTTT 58.086 52.632 0.00 0.00 37.23 2.66
754 772 4.675404 GCAGTCAGCCGTACAGTT 57.325 55.556 0.00 0.00 37.23 3.16
763 781 2.424956 CCTATTCCTTTTGGCAGTCAGC 59.575 50.000 0.00 0.00 44.65 4.26
764 782 3.955471 TCCTATTCCTTTTGGCAGTCAG 58.045 45.455 0.00 0.00 40.12 3.51
765 783 4.591321 ATCCTATTCCTTTTGGCAGTCA 57.409 40.909 0.00 0.00 40.12 3.41
766 784 5.299531 GGTTATCCTATTCCTTTTGGCAGTC 59.700 44.000 0.00 0.00 40.12 3.51
767 785 5.201243 GGTTATCCTATTCCTTTTGGCAGT 58.799 41.667 0.00 0.00 40.12 4.40
768 786 4.275936 CGGTTATCCTATTCCTTTTGGCAG 59.724 45.833 0.00 0.00 40.12 4.85
769 787 4.204012 CGGTTATCCTATTCCTTTTGGCA 58.796 43.478 0.00 0.00 40.12 4.92
770 788 4.204799 ACGGTTATCCTATTCCTTTTGGC 58.795 43.478 0.00 0.00 40.12 4.52
771 789 4.510340 CGACGGTTATCCTATTCCTTTTGG 59.490 45.833 0.00 0.00 42.21 3.28
772 790 4.510340 CCGACGGTTATCCTATTCCTTTTG 59.490 45.833 5.48 0.00 0.00 2.44
773 791 4.162888 ACCGACGGTTATCCTATTCCTTTT 59.837 41.667 15.37 0.00 27.29 2.27
774 792 3.708121 ACCGACGGTTATCCTATTCCTTT 59.292 43.478 15.37 0.00 27.29 3.11
775 793 3.069158 CACCGACGGTTATCCTATTCCTT 59.931 47.826 19.02 0.00 31.02 3.36
776 794 2.626743 CACCGACGGTTATCCTATTCCT 59.373 50.000 19.02 0.00 31.02 3.36
777 795 2.363359 ACACCGACGGTTATCCTATTCC 59.637 50.000 19.02 0.00 31.02 3.01
778 796 3.636381 GACACCGACGGTTATCCTATTC 58.364 50.000 19.02 0.18 31.02 1.75
779 797 2.033801 CGACACCGACGGTTATCCTATT 59.966 50.000 19.02 0.00 38.22 1.73
780 798 1.605710 CGACACCGACGGTTATCCTAT 59.394 52.381 19.02 0.00 38.22 2.57
781 799 1.016627 CGACACCGACGGTTATCCTA 58.983 55.000 19.02 0.00 38.22 2.94
782 800 0.677731 TCGACACCGACGGTTATCCT 60.678 55.000 19.02 0.00 40.30 3.24
783 801 1.802636 TCGACACCGACGGTTATCC 59.197 57.895 19.02 5.75 40.30 2.59
802 820 2.938539 GCAGCTAGCTACGGGTGACG 62.939 65.000 18.86 2.47 44.58 4.35
803 821 1.227002 GCAGCTAGCTACGGGTGAC 60.227 63.158 18.86 0.00 41.15 3.67
804 822 3.207354 GCAGCTAGCTACGGGTGA 58.793 61.111 18.86 0.00 41.15 4.02
813 831 1.399791 GAAACATCACCAGCAGCTAGC 59.600 52.381 6.62 6.62 46.19 3.42
814 832 2.012673 GGAAACATCACCAGCAGCTAG 58.987 52.381 0.00 0.00 0.00 3.42
815 833 1.675714 CGGAAACATCACCAGCAGCTA 60.676 52.381 0.00 0.00 0.00 3.32
816 834 0.957395 CGGAAACATCACCAGCAGCT 60.957 55.000 0.00 0.00 0.00 4.24
817 835 1.237285 ACGGAAACATCACCAGCAGC 61.237 55.000 0.00 0.00 0.00 5.25
818 836 1.238439 AACGGAAACATCACCAGCAG 58.762 50.000 0.00 0.00 0.00 4.24
819 837 1.606668 GAAACGGAAACATCACCAGCA 59.393 47.619 0.00 0.00 0.00 4.41
820 838 1.399727 CGAAACGGAAACATCACCAGC 60.400 52.381 0.00 0.00 0.00 4.85
821 839 2.594529 CGAAACGGAAACATCACCAG 57.405 50.000 0.00 0.00 0.00 4.00
842 860 3.817787 ACTGCAGTGCACAGTGTG 58.182 55.556 20.97 19.27 46.38 3.82
852 870 4.586235 GTGGGGGTGCACTGCAGT 62.586 66.667 15.25 15.25 40.08 4.40
853 871 4.275508 AGTGGGGGTGCACTGCAG 62.276 66.667 17.98 13.48 40.08 4.41
854 872 4.584518 CAGTGGGGGTGCACTGCA 62.585 66.667 17.98 0.00 41.65 4.41
857 875 1.152756 GAAACAGTGGGGGTGCACT 60.153 57.895 17.98 0.00 0.00 4.40
858 876 2.200337 GGAAACAGTGGGGGTGCAC 61.200 63.158 8.80 8.80 0.00 4.57
859 877 2.197324 GGAAACAGTGGGGGTGCA 59.803 61.111 0.00 0.00 0.00 4.57
860 878 2.983592 CGGAAACAGTGGGGGTGC 60.984 66.667 0.00 0.00 0.00 5.01
861 879 2.282180 CCGGAAACAGTGGGGGTG 60.282 66.667 0.00 0.00 0.00 4.61
862 880 4.280019 GCCGGAAACAGTGGGGGT 62.280 66.667 5.05 0.00 0.00 4.95
863 881 4.278513 TGCCGGAAACAGTGGGGG 62.279 66.667 5.05 0.00 0.00 5.40
864 882 2.983592 GTGCCGGAAACAGTGGGG 60.984 66.667 5.05 0.00 0.00 4.96
865 883 2.203280 TGTGCCGGAAACAGTGGG 60.203 61.111 5.05 0.00 0.00 4.61
866 884 2.260869 CCTGTGCCGGAAACAGTGG 61.261 63.158 26.73 15.61 42.90 4.00
867 885 2.260869 CCCTGTGCCGGAAACAGTG 61.261 63.158 26.73 17.44 42.90 3.66
868 886 2.113139 CCCTGTGCCGGAAACAGT 59.887 61.111 26.73 0.00 42.90 3.55
869 887 2.463589 TAGCCCTGTGCCGGAAACAG 62.464 60.000 23.87 23.87 43.84 3.16
870 888 2.058125 TTAGCCCTGTGCCGGAAACA 62.058 55.000 5.05 8.10 42.71 2.83
871 889 1.302993 TTAGCCCTGTGCCGGAAAC 60.303 57.895 5.05 2.47 42.71 2.78
872 890 1.002624 CTTAGCCCTGTGCCGGAAA 60.003 57.895 5.05 0.00 42.71 3.13
873 891 1.271840 ATCTTAGCCCTGTGCCGGAA 61.272 55.000 5.05 0.00 42.71 4.30
874 892 0.397957 TATCTTAGCCCTGTGCCGGA 60.398 55.000 5.05 0.00 42.71 5.14
887 905 1.276705 TGGTGCCGTTGTGCTATCTTA 59.723 47.619 0.00 0.00 0.00 2.10
902 920 2.369394 GCCCTATATATTGGCTGGTGC 58.631 52.381 15.32 7.03 42.01 5.01
903 921 2.632377 CGCCCTATATATTGGCTGGTG 58.368 52.381 18.54 5.98 43.12 4.17
906 924 2.401583 TGCGCCCTATATATTGGCTG 57.598 50.000 18.54 14.26 43.12 4.85
907 925 2.505407 TCATGCGCCCTATATATTGGCT 59.495 45.455 18.54 3.51 43.12 4.75
908 926 2.874701 CTCATGCGCCCTATATATTGGC 59.125 50.000 4.18 13.42 41.85 4.52
927 945 2.083774 TCATGTGATGGGAAAACGCTC 58.916 47.619 0.00 0.00 0.00 5.03
937 955 3.739810 CGTATCTGCTTCTCATGTGATGG 59.260 47.826 11.32 4.11 0.00 3.51
974 992 8.482943 TGGATAGAGGAAAGACGATAAATTTCA 58.517 33.333 0.00 0.00 35.18 2.69
975 993 8.888579 TGGATAGAGGAAAGACGATAAATTTC 57.111 34.615 0.00 0.00 33.20 2.17
982 1000 3.007398 GCCATGGATAGAGGAAAGACGAT 59.993 47.826 18.40 0.00 0.00 3.73
985 1003 2.439507 TGGCCATGGATAGAGGAAAGAC 59.560 50.000 18.40 0.00 0.00 3.01
990 1008 1.121407 CCGTGGCCATGGATAGAGGA 61.121 60.000 36.99 0.00 39.90 3.71
991 1009 1.121407 TCCGTGGCCATGGATAGAGG 61.121 60.000 38.16 14.98 41.36 3.69
992 1010 2.440946 TCCGTGGCCATGGATAGAG 58.559 57.895 38.16 15.70 41.36 2.43
1012 1030 3.585990 GCGGCTGTGTTGCTGTGT 61.586 61.111 0.00 0.00 41.12 3.72
1078 1107 1.761174 GGTTGAGGTGGCTCTGGAA 59.239 57.895 0.00 0.00 0.00 3.53
1223 1252 1.166531 GGCGGTATCCTCACCATTGC 61.167 60.000 0.00 0.00 38.61 3.56
1229 1258 2.106332 CGGTGGCGGTATCCTCAC 59.894 66.667 0.00 0.00 0.00 3.51
1263 1295 2.782222 GCCGTCGGAGTATGGAGCA 61.782 63.158 17.49 0.00 0.00 4.26
1357 1389 2.683933 GAAGGTGGCGAGGAGGGA 60.684 66.667 0.00 0.00 0.00 4.20
1360 1392 4.821589 GGCGAAGGTGGCGAGGAG 62.822 72.222 0.00 0.00 0.00 3.69
1617 1649 0.611062 TGGTGTCGACGAGGAAGGAT 60.611 55.000 11.62 0.00 0.00 3.24
1652 1684 2.478894 GCCGATTCGTTGAAGAACTTGA 59.521 45.455 5.20 0.00 32.39 3.02
1657 1689 1.017177 CGGGCCGATTCGTTGAAGAA 61.017 55.000 24.41 0.00 34.31 2.52
1669 1701 3.311110 AAACAGCTCTCGGGCCGA 61.311 61.111 29.14 29.14 0.00 5.54
1686 1718 2.268920 GGATCGCCCAAGTGCTCA 59.731 61.111 0.00 0.00 34.14 4.26
1899 1937 0.465287 AAACGTACACCACCGACCTT 59.535 50.000 0.00 0.00 0.00 3.50
2028 2066 2.752238 CTCCGGCTCACGTCCTCT 60.752 66.667 0.00 0.00 42.24 3.69
2228 2266 2.034305 TCCTCCTCTATTAAGAACGCGC 59.966 50.000 5.73 0.00 0.00 6.86
2238 2276 1.799933 CAGCCCACTCCTCCTCTATT 58.200 55.000 0.00 0.00 0.00 1.73
2295 2333 4.475135 GCAAGCTCCTCCCCGGTC 62.475 72.222 0.00 0.00 0.00 4.79
2310 2348 4.299547 AGCTCAACGCACCTCGCA 62.300 61.111 0.00 0.00 42.60 5.10
2345 2383 1.138568 CCTGATCTCAATGGCCCTCT 58.861 55.000 0.00 0.00 0.00 3.69
2382 2420 0.101759 CCTCTTGCGCCATCCATTTG 59.898 55.000 4.18 0.00 0.00 2.32
2386 2424 4.802051 GGCCTCTTGCGCCATCCA 62.802 66.667 4.18 0.00 46.27 3.41
2456 2496 5.713025 CAAACTTCACCCGATGATTGAATT 58.287 37.500 0.00 0.00 37.11 2.17
2470 2510 3.002862 TGGTGTATTCGTGCAAACTTCAC 59.997 43.478 0.00 0.00 0.00 3.18
2498 2538 5.337251 CGTACTTAATCACGATCTCGACATG 59.663 44.000 6.60 0.00 43.02 3.21
2499 2539 5.441543 CGTACTTAATCACGATCTCGACAT 58.558 41.667 6.60 0.00 43.02 3.06
2504 2544 4.036027 TGTCCCGTACTTAATCACGATCTC 59.964 45.833 9.79 1.03 40.56 2.75
2506 2546 4.040376 GTGTCCCGTACTTAATCACGATC 58.960 47.826 9.79 0.00 40.56 3.69
2511 2551 3.827876 TCACTGTGTCCCGTACTTAATCA 59.172 43.478 7.79 0.00 0.00 2.57
2512 2552 4.445452 TCACTGTGTCCCGTACTTAATC 57.555 45.455 7.79 0.00 0.00 1.75
2513 2553 4.877378 TTCACTGTGTCCCGTACTTAAT 57.123 40.909 7.79 0.00 0.00 1.40
2514 2554 4.669206 TTTCACTGTGTCCCGTACTTAA 57.331 40.909 7.79 0.00 0.00 1.85
2515 2555 4.877378 ATTTCACTGTGTCCCGTACTTA 57.123 40.909 7.79 0.00 0.00 2.24
2516 2556 3.764237 ATTTCACTGTGTCCCGTACTT 57.236 42.857 7.79 0.00 0.00 2.24
2517 2557 4.877378 TTATTTCACTGTGTCCCGTACT 57.123 40.909 7.79 0.00 0.00 2.73
2518 2558 5.927954 TTTTATTTCACTGTGTCCCGTAC 57.072 39.130 7.79 0.00 0.00 3.67
2519 2559 6.819649 CCTATTTTATTTCACTGTGTCCCGTA 59.180 38.462 7.79 0.00 0.00 4.02
2520 2560 5.646360 CCTATTTTATTTCACTGTGTCCCGT 59.354 40.000 7.79 0.00 0.00 5.28
2521 2561 5.878116 TCCTATTTTATTTCACTGTGTCCCG 59.122 40.000 7.79 0.00 0.00 5.14
2522 2562 6.183360 CGTCCTATTTTATTTCACTGTGTCCC 60.183 42.308 7.79 0.00 0.00 4.46
2523 2563 6.592607 TCGTCCTATTTTATTTCACTGTGTCC 59.407 38.462 7.79 0.00 0.00 4.02
2524 2564 7.331193 ACTCGTCCTATTTTATTTCACTGTGTC 59.669 37.037 7.79 0.00 0.00 3.67
2525 2565 7.159372 ACTCGTCCTATTTTATTTCACTGTGT 58.841 34.615 7.79 0.00 0.00 3.72
2526 2566 7.201530 GGACTCGTCCTATTTTATTTCACTGTG 60.202 40.741 8.82 0.17 46.16 3.66
2527 2567 6.817140 GGACTCGTCCTATTTTATTTCACTGT 59.183 38.462 8.82 0.00 46.16 3.55
2528 2568 7.235430 GGACTCGTCCTATTTTATTTCACTG 57.765 40.000 8.82 0.00 46.16 3.66
2544 2584 4.803426 CCGCCAGCTGGACTCGTC 62.803 72.222 37.21 16.18 37.39 4.20
2583 2623 4.735132 TTTCTGTCCGGCCGCTCG 62.735 66.667 22.85 6.58 0.00 5.03
2584 2624 2.358247 TTTTCTGTCCGGCCGCTC 60.358 61.111 22.85 15.30 0.00 5.03
2585 2625 2.358737 CTTTTCTGTCCGGCCGCT 60.359 61.111 22.85 0.00 0.00 5.52
2586 2626 1.512156 TTTCTTTTCTGTCCGGCCGC 61.512 55.000 22.85 7.92 0.00 6.53
2587 2627 0.948678 TTTTCTTTTCTGTCCGGCCG 59.051 50.000 21.04 21.04 0.00 6.13
2588 2628 3.660501 ATTTTTCTTTTCTGTCCGGCC 57.339 42.857 0.00 0.00 0.00 6.13
2589 2629 6.645003 ACATAAATTTTTCTTTTCTGTCCGGC 59.355 34.615 0.00 0.00 0.00 6.13
2590 2630 7.328493 GGACATAAATTTTTCTTTTCTGTCCGG 59.672 37.037 14.12 0.00 38.51 5.14
2591 2631 7.328493 GGGACATAAATTTTTCTTTTCTGTCCG 59.672 37.037 19.04 0.00 42.90 4.79
2592 2632 7.602644 GGGGACATAAATTTTTCTTTTCTGTCC 59.397 37.037 18.19 18.19 42.21 4.02
2593 2633 8.147704 TGGGGACATAAATTTTTCTTTTCTGTC 58.852 33.333 0.00 6.27 33.38 3.51
2594 2634 8.028652 TGGGGACATAAATTTTTCTTTTCTGT 57.971 30.769 0.00 0.00 33.40 3.41
2595 2635 8.150296 ACTGGGGACATAAATTTTTCTTTTCTG 58.850 33.333 0.00 0.00 41.51 3.02
2596 2636 8.262601 ACTGGGGACATAAATTTTTCTTTTCT 57.737 30.769 0.00 0.00 41.51 2.52
2597 2637 8.902540 AACTGGGGACATAAATTTTTCTTTTC 57.097 30.769 0.00 0.00 41.51 2.29
2598 2638 7.936847 GGAACTGGGGACATAAATTTTTCTTTT 59.063 33.333 0.00 0.00 41.51 2.27
2599 2639 7.450074 GGAACTGGGGACATAAATTTTTCTTT 58.550 34.615 0.00 0.00 41.51 2.52
2600 2640 6.013725 GGGAACTGGGGACATAAATTTTTCTT 60.014 38.462 0.00 0.00 41.51 2.52
2601 2641 5.483937 GGGAACTGGGGACATAAATTTTTCT 59.516 40.000 0.00 0.00 41.51 2.52
2602 2642 5.338056 GGGGAACTGGGGACATAAATTTTTC 60.338 44.000 0.00 0.00 41.51 2.29
2603 2643 4.534500 GGGGAACTGGGGACATAAATTTTT 59.466 41.667 0.00 0.00 41.51 1.94
2604 2644 4.101114 GGGGAACTGGGGACATAAATTTT 58.899 43.478 0.00 0.00 41.51 1.82
2605 2645 3.078305 TGGGGAACTGGGGACATAAATTT 59.922 43.478 0.00 0.00 41.51 1.82
2606 2646 2.657459 TGGGGAACTGGGGACATAAATT 59.343 45.455 0.00 0.00 41.51 1.82
2607 2647 2.293246 TGGGGAACTGGGGACATAAAT 58.707 47.619 0.00 0.00 41.51 1.40
2608 2648 1.761711 TGGGGAACTGGGGACATAAA 58.238 50.000 0.00 0.00 41.51 1.40
2609 2649 1.761711 TTGGGGAACTGGGGACATAA 58.238 50.000 0.00 0.00 41.51 1.90
2610 2650 1.761711 TTTGGGGAACTGGGGACATA 58.238 50.000 0.00 0.00 41.51 2.29
2611 2651 0.863956 TTTTGGGGAACTGGGGACAT 59.136 50.000 0.00 0.00 41.51 3.06
2612 2652 0.187361 CTTTTGGGGAACTGGGGACA 59.813 55.000 0.00 0.00 39.59 4.02
2613 2653 0.541998 CCTTTTGGGGAACTGGGGAC 60.542 60.000 0.00 0.00 35.46 4.46
2614 2654 0.703056 TCCTTTTGGGGAACTGGGGA 60.703 55.000 0.00 0.00 40.87 4.81
2615 2655 0.189822 TTCCTTTTGGGGAACTGGGG 59.810 55.000 0.00 0.00 40.08 4.96
2616 2656 1.970640 CTTTCCTTTTGGGGAACTGGG 59.029 52.381 0.00 0.00 44.05 4.45
2617 2657 1.344438 GCTTTCCTTTTGGGGAACTGG 59.656 52.381 0.00 0.00 44.05 4.00
2618 2658 2.038659 TGCTTTCCTTTTGGGGAACTG 58.961 47.619 0.00 0.00 44.05 3.16
2619 2659 2.470057 TGCTTTCCTTTTGGGGAACT 57.530 45.000 0.00 0.00 44.05 3.01
2620 2660 2.028112 GGATGCTTTCCTTTTGGGGAAC 60.028 50.000 0.00 0.00 44.05 3.62
2621 2661 2.256306 GGATGCTTTCCTTTTGGGGAA 58.744 47.619 0.00 0.00 42.86 3.97
2622 2662 1.937191 GGATGCTTTCCTTTTGGGGA 58.063 50.000 0.00 0.00 41.78 4.81
2631 2671 0.887933 TTTGCGGAAGGATGCTTTCC 59.112 50.000 0.00 3.33 45.85 3.13
2632 2672 2.328473 GTTTTGCGGAAGGATGCTTTC 58.672 47.619 0.00 0.00 0.00 2.62
2633 2673 1.000843 GGTTTTGCGGAAGGATGCTTT 59.999 47.619 0.00 0.00 0.00 3.51
2634 2674 0.603065 GGTTTTGCGGAAGGATGCTT 59.397 50.000 0.00 0.00 0.00 3.91
2635 2675 1.250840 GGGTTTTGCGGAAGGATGCT 61.251 55.000 0.00 0.00 0.00 3.79
2636 2676 1.215382 GGGTTTTGCGGAAGGATGC 59.785 57.895 0.00 0.00 0.00 3.91
2637 2677 0.243636 GTGGGTTTTGCGGAAGGATG 59.756 55.000 0.00 0.00 0.00 3.51
2638 2678 1.241315 CGTGGGTTTTGCGGAAGGAT 61.241 55.000 0.00 0.00 0.00 3.24
2639 2679 1.894756 CGTGGGTTTTGCGGAAGGA 60.895 57.895 0.00 0.00 0.00 3.36
2640 2680 1.448922 TTCGTGGGTTTTGCGGAAGG 61.449 55.000 0.00 0.00 0.00 3.46
2641 2681 0.317519 GTTCGTGGGTTTTGCGGAAG 60.318 55.000 0.00 0.00 0.00 3.46
2642 2682 1.030488 TGTTCGTGGGTTTTGCGGAA 61.030 50.000 0.00 0.00 0.00 4.30
2643 2683 1.440938 CTGTTCGTGGGTTTTGCGGA 61.441 55.000 0.00 0.00 0.00 5.54
2644 2684 1.008995 CTGTTCGTGGGTTTTGCGG 60.009 57.895 0.00 0.00 0.00 5.69
2645 2685 0.378962 TTCTGTTCGTGGGTTTTGCG 59.621 50.000 0.00 0.00 0.00 4.85
2646 2686 2.098443 TCTTTCTGTTCGTGGGTTTTGC 59.902 45.455 0.00 0.00 0.00 3.68
2647 2687 3.625764 TCTCTTTCTGTTCGTGGGTTTTG 59.374 43.478 0.00 0.00 0.00 2.44
2648 2688 3.881220 TCTCTTTCTGTTCGTGGGTTTT 58.119 40.909 0.00 0.00 0.00 2.43
2649 2689 3.553828 TCTCTTTCTGTTCGTGGGTTT 57.446 42.857 0.00 0.00 0.00 3.27
2650 2690 3.553828 TTCTCTTTCTGTTCGTGGGTT 57.446 42.857 0.00 0.00 0.00 4.11
2651 2691 3.553828 TTTCTCTTTCTGTTCGTGGGT 57.446 42.857 0.00 0.00 0.00 4.51
2652 2692 4.515191 TGAATTTCTCTTTCTGTTCGTGGG 59.485 41.667 0.00 0.00 0.00 4.61
2653 2693 5.673337 TGAATTTCTCTTTCTGTTCGTGG 57.327 39.130 0.00 0.00 0.00 4.94
2654 2694 6.138761 CCTTGAATTTCTCTTTCTGTTCGTG 58.861 40.000 0.00 0.00 0.00 4.35
2655 2695 5.278022 GCCTTGAATTTCTCTTTCTGTTCGT 60.278 40.000 0.00 0.00 0.00 3.85
2656 2696 5.149977 GCCTTGAATTTCTCTTTCTGTTCG 58.850 41.667 0.00 0.00 0.00 3.95
2657 2697 5.242615 AGGCCTTGAATTTCTCTTTCTGTTC 59.757 40.000 0.00 0.00 0.00 3.18
2658 2698 5.143369 AGGCCTTGAATTTCTCTTTCTGTT 58.857 37.500 0.00 0.00 0.00 3.16
2659 2699 4.734266 AGGCCTTGAATTTCTCTTTCTGT 58.266 39.130 0.00 0.00 0.00 3.41
2660 2700 5.942826 ACTAGGCCTTGAATTTCTCTTTCTG 59.057 40.000 21.63 0.00 0.00 3.02
2661 2701 6.133253 ACTAGGCCTTGAATTTCTCTTTCT 57.867 37.500 21.63 0.00 0.00 2.52
2662 2702 5.064071 CGACTAGGCCTTGAATTTCTCTTTC 59.936 44.000 21.63 2.86 0.00 2.62
2663 2703 4.938226 CGACTAGGCCTTGAATTTCTCTTT 59.062 41.667 21.63 0.00 0.00 2.52
2664 2704 4.508662 CGACTAGGCCTTGAATTTCTCTT 58.491 43.478 21.63 0.00 0.00 2.85
2665 2705 3.680196 GCGACTAGGCCTTGAATTTCTCT 60.680 47.826 21.63 0.00 0.00 3.10
2666 2706 2.609916 GCGACTAGGCCTTGAATTTCTC 59.390 50.000 21.63 5.73 0.00 2.87
2667 2707 2.237392 AGCGACTAGGCCTTGAATTTCT 59.763 45.455 21.63 7.20 0.00 2.52
2668 2708 2.633488 AGCGACTAGGCCTTGAATTTC 58.367 47.619 21.63 6.83 0.00 2.17
2669 2709 2.789409 AGCGACTAGGCCTTGAATTT 57.211 45.000 21.63 0.00 0.00 1.82
2670 2710 3.388024 TGATAGCGACTAGGCCTTGAATT 59.612 43.478 21.63 0.00 0.00 2.17
2671 2711 2.965831 TGATAGCGACTAGGCCTTGAAT 59.034 45.455 21.63 0.00 0.00 2.57
2672 2712 2.100916 GTGATAGCGACTAGGCCTTGAA 59.899 50.000 21.63 0.00 0.00 2.69
2673 2713 1.681793 GTGATAGCGACTAGGCCTTGA 59.318 52.381 21.63 0.00 0.00 3.02
2674 2714 1.600663 CGTGATAGCGACTAGGCCTTG 60.601 57.143 12.58 12.86 0.00 3.61
2675 2715 0.669077 CGTGATAGCGACTAGGCCTT 59.331 55.000 12.58 0.00 0.00 4.35
2676 2716 0.465824 ACGTGATAGCGACTAGGCCT 60.466 55.000 11.78 11.78 35.59 5.19
2677 2717 0.317938 CACGTGATAGCGACTAGGCC 60.318 60.000 10.90 0.00 35.59 5.19
2678 2718 0.661552 TCACGTGATAGCGACTAGGC 59.338 55.000 15.76 0.00 35.59 3.93
2679 2719 1.002684 GGTCACGTGATAGCGACTAGG 60.003 57.143 23.12 0.00 35.59 3.02
2680 2720 1.002684 GGGTCACGTGATAGCGACTAG 60.003 57.143 23.12 0.00 35.59 2.57
2681 2721 1.019673 GGGTCACGTGATAGCGACTA 58.980 55.000 23.12 0.00 35.59 2.59
2682 2722 0.963856 TGGGTCACGTGATAGCGACT 60.964 55.000 23.12 0.00 35.59 4.18
2683 2723 0.801067 GTGGGTCACGTGATAGCGAC 60.801 60.000 23.12 13.22 35.59 5.19
2684 2724 0.963856 AGTGGGTCACGTGATAGCGA 60.964 55.000 23.12 4.15 39.64 4.93
2685 2725 0.736636 TAGTGGGTCACGTGATAGCG 59.263 55.000 23.12 0.00 39.64 4.26
2686 2726 1.202382 GGTAGTGGGTCACGTGATAGC 60.202 57.143 23.12 14.84 39.64 2.97
2687 2727 1.407979 GGGTAGTGGGTCACGTGATAG 59.592 57.143 23.12 0.00 39.64 2.08
2688 2728 1.006281 AGGGTAGTGGGTCACGTGATA 59.994 52.381 23.12 6.63 39.64 2.15
2689 2729 0.252103 AGGGTAGTGGGTCACGTGAT 60.252 55.000 23.12 7.75 39.64 3.06
2690 2730 0.405198 TAGGGTAGTGGGTCACGTGA 59.595 55.000 15.76 15.76 39.64 4.35
2691 2731 0.529378 GTAGGGTAGTGGGTCACGTG 59.471 60.000 9.94 9.94 39.64 4.49
2692 2732 0.112995 TGTAGGGTAGTGGGTCACGT 59.887 55.000 0.00 0.00 39.64 4.49
2693 2733 0.815734 CTGTAGGGTAGTGGGTCACG 59.184 60.000 0.00 0.00 39.64 4.35
2694 2734 2.226962 TCTGTAGGGTAGTGGGTCAC 57.773 55.000 0.00 0.00 34.10 3.67
2695 2735 2.747177 CATCTGTAGGGTAGTGGGTCA 58.253 52.381 0.00 0.00 0.00 4.02
2696 2736 1.413077 GCATCTGTAGGGTAGTGGGTC 59.587 57.143 0.00 0.00 0.00 4.46
2697 2737 1.497161 GCATCTGTAGGGTAGTGGGT 58.503 55.000 0.00 0.00 0.00 4.51
2698 2738 0.759346 GGCATCTGTAGGGTAGTGGG 59.241 60.000 0.00 0.00 0.00 4.61
2699 2739 1.794714 AGGCATCTGTAGGGTAGTGG 58.205 55.000 0.00 0.00 0.00 4.00
2700 2740 3.034635 AGAAGGCATCTGTAGGGTAGTG 58.965 50.000 0.00 0.00 36.88 2.74
2701 2741 3.406512 AGAAGGCATCTGTAGGGTAGT 57.593 47.619 0.00 0.00 36.88 2.73
2702 2742 3.253677 CGTAGAAGGCATCTGTAGGGTAG 59.746 52.174 1.83 0.00 39.30 3.18
2703 2743 3.220110 CGTAGAAGGCATCTGTAGGGTA 58.780 50.000 1.83 0.00 39.30 3.69
2704 2744 2.032620 CGTAGAAGGCATCTGTAGGGT 58.967 52.381 1.83 0.00 39.30 4.34
2705 2745 1.269831 GCGTAGAAGGCATCTGTAGGG 60.270 57.143 1.83 0.00 39.30 3.53
2706 2746 1.269831 GGCGTAGAAGGCATCTGTAGG 60.270 57.143 1.83 0.00 39.30 3.18
2707 2747 1.683917 AGGCGTAGAAGGCATCTGTAG 59.316 52.381 1.83 0.00 39.30 2.74
2708 2748 1.776662 AGGCGTAGAAGGCATCTGTA 58.223 50.000 1.83 0.00 39.30 2.74
2709 2749 0.905357 AAGGCGTAGAAGGCATCTGT 59.095 50.000 1.83 0.00 39.30 3.41
2710 2750 1.576356 GAAGGCGTAGAAGGCATCTG 58.424 55.000 1.83 0.00 39.30 2.90
2711 2751 0.466124 GGAAGGCGTAGAAGGCATCT 59.534 55.000 0.00 0.00 42.48 2.90
2712 2752 0.466124 AGGAAGGCGTAGAAGGCATC 59.534 55.000 0.00 0.00 39.37 3.91
2713 2753 0.466124 GAGGAAGGCGTAGAAGGCAT 59.534 55.000 0.00 0.00 39.37 4.40
2714 2754 1.898154 GAGGAAGGCGTAGAAGGCA 59.102 57.895 0.00 0.00 39.37 4.75
2715 2755 1.227002 CGAGGAAGGCGTAGAAGGC 60.227 63.158 0.00 0.00 0.00 4.35
2716 2756 1.227002 GCGAGGAAGGCGTAGAAGG 60.227 63.158 0.00 0.00 0.00 3.46
2717 2757 0.248702 GAGCGAGGAAGGCGTAGAAG 60.249 60.000 0.00 0.00 35.00 2.85
2718 2758 0.963856 TGAGCGAGGAAGGCGTAGAA 60.964 55.000 0.00 0.00 35.00 2.10
2719 2759 1.378119 TGAGCGAGGAAGGCGTAGA 60.378 57.895 0.00 0.00 35.00 2.59
2720 2760 1.226717 GTGAGCGAGGAAGGCGTAG 60.227 63.158 0.00 0.00 35.00 3.51
2721 2761 1.974875 TGTGAGCGAGGAAGGCGTA 60.975 57.895 0.00 0.00 35.00 4.42
2722 2762 3.303135 TGTGAGCGAGGAAGGCGT 61.303 61.111 0.00 0.00 35.00 5.68
2723 2763 2.771763 AAGTGTGAGCGAGGAAGGCG 62.772 60.000 0.00 0.00 35.00 5.52
2724 2764 1.004440 AAGTGTGAGCGAGGAAGGC 60.004 57.895 0.00 0.00 0.00 4.35
2725 2765 0.390472 GGAAGTGTGAGCGAGGAAGG 60.390 60.000 0.00 0.00 0.00 3.46
2726 2766 0.605589 AGGAAGTGTGAGCGAGGAAG 59.394 55.000 0.00 0.00 0.00 3.46
2727 2767 0.603569 GAGGAAGTGTGAGCGAGGAA 59.396 55.000 0.00 0.00 0.00 3.36
2728 2768 1.251527 GGAGGAAGTGTGAGCGAGGA 61.252 60.000 0.00 0.00 0.00 3.71
2729 2769 1.216710 GGAGGAAGTGTGAGCGAGG 59.783 63.158 0.00 0.00 0.00 4.63
2730 2770 0.108898 CAGGAGGAAGTGTGAGCGAG 60.109 60.000 0.00 0.00 0.00 5.03
2731 2771 1.967535 CAGGAGGAAGTGTGAGCGA 59.032 57.895 0.00 0.00 0.00 4.93
2732 2772 1.739562 GCAGGAGGAAGTGTGAGCG 60.740 63.158 0.00 0.00 0.00 5.03
2733 2773 0.952984 GTGCAGGAGGAAGTGTGAGC 60.953 60.000 0.00 0.00 0.00 4.26
2734 2774 0.668706 CGTGCAGGAGGAAGTGTGAG 60.669 60.000 0.00 0.00 0.00 3.51
2735 2775 1.367471 CGTGCAGGAGGAAGTGTGA 59.633 57.895 0.00 0.00 0.00 3.58
2736 2776 1.669115 CCGTGCAGGAGGAAGTGTG 60.669 63.158 8.24 0.00 45.00 3.82
2737 2777 2.743718 CCGTGCAGGAGGAAGTGT 59.256 61.111 8.24 0.00 45.00 3.55
2738 2778 2.743928 GCCGTGCAGGAGGAAGTG 60.744 66.667 8.24 0.00 45.00 3.16
2739 2779 4.379243 CGCCGTGCAGGAGGAAGT 62.379 66.667 8.24 0.00 45.00 3.01
2740 2780 4.379243 ACGCCGTGCAGGAGGAAG 62.379 66.667 8.24 2.99 44.78 3.46
2741 2781 4.373116 GACGCCGTGCAGGAGGAA 62.373 66.667 8.24 0.00 44.78 3.36
2754 2794 0.102481 TATGGAGAAGAAGGCGACGC 59.898 55.000 12.43 12.43 0.00 5.19
2755 2795 1.405821 AGTATGGAGAAGAAGGCGACG 59.594 52.381 0.00 0.00 0.00 5.12
2756 2796 3.633065 ACTAGTATGGAGAAGAAGGCGAC 59.367 47.826 0.00 0.00 0.00 5.19
2757 2797 3.899726 ACTAGTATGGAGAAGAAGGCGA 58.100 45.455 0.00 0.00 0.00 5.54
2758 2798 5.769484 TTACTAGTATGGAGAAGAAGGCG 57.231 43.478 2.79 0.00 0.00 5.52
2780 2820 2.393764 CCGAATGAAAGCGCTGTTTTT 58.606 42.857 12.58 0.00 0.00 1.94
2785 2825 2.100991 GCCCGAATGAAAGCGCTG 59.899 61.111 12.58 0.00 0.00 5.18
2788 2828 1.097547 ATCTGGCCCGAATGAAAGCG 61.098 55.000 0.00 0.00 0.00 4.68
2818 2858 3.370527 CCGGTTTATGACAGAACTGGGAT 60.371 47.826 18.30 0.93 44.79 3.85
2828 2868 2.616765 CCATGTGTCCCGGTTTATGACA 60.617 50.000 6.41 6.41 36.71 3.58
2833 2873 1.001887 GCCCATGTGTCCCGGTTTA 60.002 57.895 0.00 0.00 0.00 2.01
2834 2874 2.282887 GCCCATGTGTCCCGGTTT 60.283 61.111 0.00 0.00 0.00 3.27
2850 2961 2.754254 GAACCGGGACCAATGGGC 60.754 66.667 6.32 0.00 37.90 5.36
2854 2965 1.295423 CTCACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 32.99 3.16
2882 2993 2.190578 GGATTGAGGCCCGACAGG 59.809 66.667 0.00 0.00 39.47 4.00
2883 2994 1.153289 CAGGATTGAGGCCCGACAG 60.153 63.158 0.00 0.00 0.00 3.51
2884 2995 1.612146 TCAGGATTGAGGCCCGACA 60.612 57.895 0.00 0.00 0.00 4.35
2885 2996 1.153349 GTCAGGATTGAGGCCCGAC 60.153 63.158 0.00 0.00 32.98 4.79
2886 2997 2.367202 GGTCAGGATTGAGGCCCGA 61.367 63.158 0.00 0.00 32.98 5.14
2887 2998 2.190578 GGTCAGGATTGAGGCCCG 59.809 66.667 0.00 0.00 32.98 6.13
2895 3007 1.084018 AATGGTGGTGGGTCAGGATT 58.916 50.000 0.00 0.00 0.00 3.01
2896 3008 0.332632 CAATGGTGGTGGGTCAGGAT 59.667 55.000 0.00 0.00 0.00 3.24
3046 3158 2.756283 CTCTTCCCTCGTCGGCCT 60.756 66.667 0.00 0.00 0.00 5.19
3059 3172 0.178990 GACCACCACAAAGCCCTCTT 60.179 55.000 0.00 0.00 0.00 2.85
3076 3189 3.447586 TGTGCATAGGAGGTGAGTTAGAC 59.552 47.826 0.00 0.00 0.00 2.59
3081 3194 0.532573 CGTGTGCATAGGAGGTGAGT 59.467 55.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.