Multiple sequence alignment - TraesCS2B01G507900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G507900 chr2B 100.000 3053 0 0 1 3053 704412593 704409541 0.000000e+00 5638.0
1 TraesCS2B01G507900 chr2B 93.452 168 8 3 615 780 385568868 385568702 2.350000e-61 246.0
2 TraesCS2B01G507900 chr2B 93.082 159 11 0 2844 3002 15174732 15174574 1.830000e-57 233.0
3 TraesCS2B01G507900 chr2B 84.146 164 25 1 229 391 704967961 704967798 1.130000e-34 158.0
4 TraesCS2B01G507900 chr2B 85.185 108 15 1 503 610 560893376 560893482 3.220000e-20 110.0
5 TraesCS2B01G507900 chr2B 96.491 57 2 0 1 57 704580059 704580003 9.010000e-16 95.3
6 TraesCS2B01G507900 chr2B 94.737 57 3 0 1 57 704722152 704722096 4.190000e-14 89.8
7 TraesCS2B01G507900 chr2B 94.231 52 3 0 4 55 704426388 704426337 2.520000e-11 80.5
8 TraesCS2B01G507900 chr2A 92.952 2029 89 24 859 2842 718818480 718816461 0.000000e+00 2905.0
9 TraesCS2B01G507900 chr2A 86.601 612 54 16 1 610 718819129 718818544 0.000000e+00 651.0
10 TraesCS2B01G507900 chr2A 90.604 149 13 1 248 396 718834168 718834021 2.400000e-46 196.0
11 TraesCS2B01G507900 chr2A 86.709 158 19 2 234 391 718929369 718929214 1.130000e-39 174.0
12 TraesCS2B01G507900 chr2A 86.755 151 20 0 241 391 718916971 718916821 5.240000e-38 169.0
13 TraesCS2B01G507900 chr2A 89.333 75 6 1 1 73 718884039 718883965 3.240000e-15 93.5
14 TraesCS2B01G507900 chr2D 90.680 794 49 14 1447 2224 584547556 584546772 0.000000e+00 1033.0
15 TraesCS2B01G507900 chr2D 87.627 493 38 13 1 476 584607223 584606737 4.450000e-153 551.0
16 TraesCS2B01G507900 chr2D 90.855 339 27 2 1118 1452 584596646 584596308 4.640000e-123 451.0
17 TraesCS2B01G507900 chr2D 85.714 168 24 0 229 396 584661511 584661344 8.700000e-41 178.0
18 TraesCS2B01G507900 chr2D 82.812 192 33 0 200 391 594999092 594999283 4.050000e-39 172.0
19 TraesCS2B01G507900 chr2D 84.615 169 25 1 203 371 584668428 584668261 1.880000e-37 167.0
20 TraesCS2B01G507900 chr2D 85.119 168 19 4 229 391 584781516 584781350 1.880000e-37 167.0
21 TraesCS2B01G507900 chr2D 98.246 57 1 0 1 57 584661771 584661715 1.940000e-17 100.0
22 TraesCS2B01G507900 chr2D 89.024 82 6 3 1 81 584657623 584657544 6.970000e-17 99.0
23 TraesCS2B01G507900 chr3B 79.427 593 101 16 1237 1814 204848234 204847648 1.710000e-107 399.0
24 TraesCS2B01G507900 chr3B 90.141 213 14 2 2847 3053 26660978 26661189 1.400000e-68 270.0
25 TraesCS2B01G507900 chr3B 78.400 375 61 14 1237 1598 469630767 469631134 3.060000e-55 226.0
26 TraesCS2B01G507900 chr3D 79.281 584 102 14 1245 1814 142998114 142997536 1.030000e-104 390.0
27 TraesCS2B01G507900 chr3D 77.665 591 113 14 1237 1814 360691537 360692121 2.910000e-90 342.0
28 TraesCS2B01G507900 chr3D 93.064 173 10 2 604 774 556140973 556141145 5.050000e-63 252.0
29 TraesCS2B01G507900 chr3D 92.529 174 10 3 602 773 168947846 168948018 2.350000e-61 246.0
30 TraesCS2B01G507900 chr3D 85.714 224 14 2 2847 3053 567748762 567748984 1.420000e-53 220.0
31 TraesCS2B01G507900 chr3D 85.577 104 14 1 507 610 87925997 87926099 1.160000e-19 108.0
32 TraesCS2B01G507900 chr3A 78.223 574 94 18 1258 1814 162752076 162751517 3.770000e-89 339.0
33 TraesCS2B01G507900 chr3A 80.804 224 24 9 2847 3053 737875496 737875717 1.130000e-34 158.0
34 TraesCS2B01G507900 chr4D 92.571 175 10 3 607 779 62120469 62120642 6.540000e-62 248.0
35 TraesCS2B01G507900 chr4D 85.577 104 14 1 507 610 479687257 479687359 1.160000e-19 108.0
36 TraesCS2B01G507900 chr7B 93.413 167 9 2 607 771 713291741 713291907 2.350000e-61 246.0
37 TraesCS2B01G507900 chr7B 83.486 218 18 6 2853 3053 81657884 81657668 1.450000e-43 187.0
38 TraesCS2B01G507900 chr7B 84.404 109 16 1 503 610 586635017 586635125 4.160000e-19 106.0
39 TraesCS2B01G507900 chr7D 91.061 179 13 3 595 771 617020859 617021036 3.930000e-59 239.0
40 TraesCS2B01G507900 chr7D 89.840 187 16 3 609 793 312574128 312574313 1.410000e-58 237.0
41 TraesCS2B01G507900 chr7D 91.765 170 12 2 606 773 104641270 104641101 5.090000e-58 235.0
42 TraesCS2B01G507900 chr4B 93.210 162 11 0 2841 3002 2877230 2877391 3.930000e-59 239.0
43 TraesCS2B01G507900 chr4B 91.975 162 13 0 2841 3002 2822241 2822402 8.520000e-56 228.0
44 TraesCS2B01G507900 chr4B 85.185 108 15 1 504 610 625970375 625970268 3.220000e-20 110.0
45 TraesCS2B01G507900 chr4B 85.577 104 14 1 507 610 606916760 606916862 1.160000e-19 108.0
46 TraesCS2B01G507900 chr4B 85.714 63 9 0 774 836 114070330 114070392 1.960000e-07 67.6
47 TraesCS2B01G507900 chr6D 89.894 188 13 5 589 771 41542464 41542650 1.410000e-58 237.0
48 TraesCS2B01G507900 chr5D 86.842 228 11 3 2843 3053 27270255 27270480 1.410000e-58 237.0
49 TraesCS2B01G507900 chr5B 93.590 156 10 0 2847 3002 472607456 472607611 1.830000e-57 233.0
50 TraesCS2B01G507900 chr5B 93.590 156 10 0 2847 3002 513634311 513634466 1.830000e-57 233.0
51 TraesCS2B01G507900 chr5B 80.531 226 21 12 2847 3053 696992406 696992627 5.270000e-33 152.0
52 TraesCS2B01G507900 chr6B 86.957 207 23 3 2847 3053 19906265 19906467 2.370000e-56 230.0
53 TraesCS2B01G507900 chr6B 92.500 160 12 0 2843 3002 109166582 109166741 2.370000e-56 230.0
54 TraesCS2B01G507900 chr6B 79.913 229 26 8 2843 3053 506735089 506735315 1.900000e-32 150.0
55 TraesCS2B01G507900 chr6B 79.204 226 26 7 2847 3053 40149665 40149888 1.480000e-28 137.0
56 TraesCS2B01G507900 chr6B 86.408 103 14 0 508 610 36133668 36133566 2.490000e-21 113.0
57 TraesCS2B01G507900 chr6B 85.714 105 14 1 506 610 120226130 120226233 3.220000e-20 110.0
58 TraesCS2B01G507900 chr5A 85.024 207 27 4 2847 3053 541475526 541475324 1.110000e-49 207.0
59 TraesCS2B01G507900 chr1B 85.047 107 16 0 504 610 24349045 24349151 3.220000e-20 110.0
60 TraesCS2B01G507900 chr6A 90.476 63 5 1 752 814 108925809 108925748 7.020000e-12 82.4
61 TraesCS2B01G507900 chr6A 86.792 53 6 1 760 811 72443258 72443310 1.180000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G507900 chr2B 704409541 704412593 3052 True 5638 5638 100.0000 1 3053 1 chr2B.!!$R3 3052
1 TraesCS2B01G507900 chr2A 718816461 718819129 2668 True 1778 2905 89.7765 1 2842 2 chr2A.!!$R5 2841
2 TraesCS2B01G507900 chr2D 584546772 584547556 784 True 1033 1033 90.6800 1447 2224 1 chr2D.!!$R1 777
3 TraesCS2B01G507900 chr3B 204847648 204848234 586 True 399 399 79.4270 1237 1814 1 chr3B.!!$R1 577
4 TraesCS2B01G507900 chr3D 142997536 142998114 578 True 390 390 79.2810 1245 1814 1 chr3D.!!$R1 569
5 TraesCS2B01G507900 chr3D 360691537 360692121 584 False 342 342 77.6650 1237 1814 1 chr3D.!!$F3 577
6 TraesCS2B01G507900 chr3A 162751517 162752076 559 True 339 339 78.2230 1258 1814 1 chr3A.!!$R1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
516 519 0.100682 ACGTGCTGCATAGTACTCCG 59.899 55.0 5.27 4.44 37.39 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2451 2501 0.249868 TCGGTGAACTTGAGGCACTG 60.25 55.0 0.0 0.0 41.55 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.172352 CTTCTCCGTGTCCTCTGCTC 59.828 60.000 0.00 0.00 0.00 4.26
60 61 0.323816 TCTCCGTGTCCTCTGCTCAT 60.324 55.000 0.00 0.00 0.00 2.90
99 101 7.038659 TCTTAGAACTGAGATCAAAGCTAAGC 58.961 38.462 14.32 0.00 33.95 3.09
100 102 5.419239 AGAACTGAGATCAAAGCTAAGCT 57.581 39.130 0.00 0.00 42.56 3.74
137 139 1.613836 CAAGCTTTCCTGCCTGACTT 58.386 50.000 0.00 0.00 0.00 3.01
138 140 2.783135 CAAGCTTTCCTGCCTGACTTA 58.217 47.619 0.00 0.00 0.00 2.24
151 153 3.255642 GCCTGACTTAACCAAGCAAATCA 59.744 43.478 0.00 0.00 34.94 2.57
153 155 5.125417 GCCTGACTTAACCAAGCAAATCATA 59.875 40.000 0.00 0.00 34.94 2.15
155 157 7.631377 GCCTGACTTAACCAAGCAAATCATAAT 60.631 37.037 0.00 0.00 34.94 1.28
157 159 8.347004 TGACTTAACCAAGCAAATCATAATGA 57.653 30.769 0.00 0.00 34.94 2.57
158 160 8.801299 TGACTTAACCAAGCAAATCATAATGAA 58.199 29.630 0.00 0.00 34.94 2.57
159 161 9.807649 GACTTAACCAAGCAAATCATAATGAAT 57.192 29.630 0.00 0.00 34.94 2.57
186 188 7.554959 AGACAAAACTAGGAAGAACATAGGA 57.445 36.000 0.00 0.00 37.22 2.94
187 189 8.152023 AGACAAAACTAGGAAGAACATAGGAT 57.848 34.615 0.00 0.00 37.22 3.24
188 190 8.606830 AGACAAAACTAGGAAGAACATAGGATT 58.393 33.333 0.00 0.00 37.22 3.01
189 191 9.232473 GACAAAACTAGGAAGAACATAGGATTT 57.768 33.333 0.00 0.00 37.22 2.17
190 192 9.232473 ACAAAACTAGGAAGAACATAGGATTTC 57.768 33.333 0.00 0.00 37.22 2.17
191 193 9.231297 CAAAACTAGGAAGAACATAGGATTTCA 57.769 33.333 0.00 0.00 37.22 2.69
192 194 9.454859 AAAACTAGGAAGAACATAGGATTTCAG 57.545 33.333 0.00 0.00 37.22 3.02
196 198 7.443302 AGGAAGAACATAGGATTTCAGATCA 57.557 36.000 0.00 0.00 0.00 2.92
198 200 7.772757 AGGAAGAACATAGGATTTCAGATCAAC 59.227 37.037 0.00 0.00 0.00 3.18
211 213 5.657826 TCAGATCAACCTCTGAAGAGAAG 57.342 43.478 8.95 0.00 46.57 2.85
212 214 5.083122 TCAGATCAACCTCTGAAGAGAAGT 58.917 41.667 8.95 0.00 46.57 3.01
213 215 5.541868 TCAGATCAACCTCTGAAGAGAAGTT 59.458 40.000 8.95 2.95 46.57 2.66
214 216 6.042552 TCAGATCAACCTCTGAAGAGAAGTTT 59.957 38.462 8.95 0.00 46.57 2.66
219 222 7.443879 ATCAACCTCTGAAGAGAAGTTTTTCTC 59.556 37.037 8.95 8.81 45.86 2.87
317 320 1.294780 CCTTCTCCAGCAGCGTCTT 59.705 57.895 0.00 0.00 0.00 3.01
378 381 2.956964 GCCGTCTTCCGCATCTCG 60.957 66.667 0.00 0.00 38.08 4.04
412 415 2.427753 GGCACGGATGATCCCCTC 59.572 66.667 5.78 0.00 31.13 4.30
428 431 1.080501 CTCGCTCACCTCGCTTCAA 60.081 57.895 0.00 0.00 0.00 2.69
429 432 1.075425 CTCGCTCACCTCGCTTCAAG 61.075 60.000 0.00 0.00 0.00 3.02
431 434 1.669115 GCTCACCTCGCTTCAAGCA 60.669 57.895 10.73 0.00 42.58 3.91
432 435 1.905922 GCTCACCTCGCTTCAAGCAC 61.906 60.000 10.73 0.00 42.58 4.40
433 436 0.601046 CTCACCTCGCTTCAAGCACA 60.601 55.000 10.73 0.00 42.58 4.57
434 437 0.179059 TCACCTCGCTTCAAGCACAA 60.179 50.000 10.73 0.00 42.58 3.33
435 438 0.662619 CACCTCGCTTCAAGCACAAA 59.337 50.000 10.73 0.00 42.58 2.83
464 467 1.065251 GGTCGTTCCTCTCGTATGGTC 59.935 57.143 0.00 0.00 0.00 4.02
477 480 0.958382 TATGGTCGGTTGTTGGCAGC 60.958 55.000 0.00 0.00 0.00 5.25
490 493 2.050985 GCAGCTTGGCACGTTGAC 60.051 61.111 11.91 0.00 0.00 3.18
498 501 1.641677 GGCACGTTGACAGTGACAC 59.358 57.895 0.00 0.00 46.41 3.67
515 518 1.135083 ACACGTGCTGCATAGTACTCC 60.135 52.381 17.22 0.00 37.39 3.85
516 519 0.100682 ACGTGCTGCATAGTACTCCG 59.899 55.000 5.27 4.44 37.39 4.63
519 522 2.194271 GTGCTGCATAGTACTCCGTTC 58.806 52.381 5.27 0.00 36.70 3.95
523 526 3.508762 CTGCATAGTACTCCGTTCGTTT 58.491 45.455 0.00 0.00 0.00 3.60
532 535 7.982371 AGTACTCCGTTCGTTTCTAAATATG 57.018 36.000 0.00 0.00 0.00 1.78
536 539 7.095270 ACTCCGTTCGTTTCTAAATATGAGTT 58.905 34.615 0.00 0.00 0.00 3.01
537 540 7.275123 ACTCCGTTCGTTTCTAAATATGAGTTC 59.725 37.037 0.00 0.00 0.00 3.01
538 541 7.318141 TCCGTTCGTTTCTAAATATGAGTTCT 58.682 34.615 0.00 0.00 0.00 3.01
539 542 7.816031 TCCGTTCGTTTCTAAATATGAGTTCTT 59.184 33.333 0.00 0.00 0.00 2.52
540 543 8.440833 CCGTTCGTTTCTAAATATGAGTTCTTT 58.559 33.333 0.00 0.00 0.00 2.52
541 544 9.807386 CGTTCGTTTCTAAATATGAGTTCTTTT 57.193 29.630 0.00 0.00 0.00 2.27
577 583 4.793071 TGAACAACATACGGAGCAAAATG 58.207 39.130 0.00 0.00 0.00 2.32
588 594 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
592 598 7.542025 GGAGCAAAATGAGTGAATCTACATTT 58.458 34.615 0.00 0.00 42.25 2.32
622 628 9.517609 AATATATCAATATAGTCGCTCCGTTTC 57.482 33.333 0.00 0.00 0.00 2.78
623 629 4.913335 TCAATATAGTCGCTCCGTTTCT 57.087 40.909 0.00 0.00 0.00 2.52
624 630 6.570672 ATCAATATAGTCGCTCCGTTTCTA 57.429 37.500 0.00 0.00 0.00 2.10
625 631 6.381481 TCAATATAGTCGCTCCGTTTCTAA 57.619 37.500 0.00 0.00 0.00 2.10
626 632 6.798482 TCAATATAGTCGCTCCGTTTCTAAA 58.202 36.000 0.00 0.00 0.00 1.85
627 633 7.431249 TCAATATAGTCGCTCCGTTTCTAAAT 58.569 34.615 0.00 0.00 0.00 1.40
628 634 8.570488 TCAATATAGTCGCTCCGTTTCTAAATA 58.430 33.333 0.00 0.00 0.00 1.40
629 635 9.355215 CAATATAGTCGCTCCGTTTCTAAATAT 57.645 33.333 0.00 0.00 0.00 1.28
632 638 8.967552 ATAGTCGCTCCGTTTCTAAATATAAG 57.032 34.615 0.00 0.00 0.00 1.73
633 639 6.803642 AGTCGCTCCGTTTCTAAATATAAGT 58.196 36.000 0.00 0.00 0.00 2.24
634 640 7.263496 AGTCGCTCCGTTTCTAAATATAAGTT 58.737 34.615 0.00 0.00 0.00 2.66
635 641 7.763071 AGTCGCTCCGTTTCTAAATATAAGTTT 59.237 33.333 0.00 0.00 0.00 2.66
636 642 8.385858 GTCGCTCCGTTTCTAAATATAAGTTTT 58.614 33.333 0.00 0.00 0.00 2.43
637 643 8.938906 TCGCTCCGTTTCTAAATATAAGTTTTT 58.061 29.630 0.00 0.00 0.00 1.94
690 696 9.298250 ACGGATGTATGTAGACATATTTAGAGT 57.702 33.333 5.69 1.27 40.18 3.24
691 697 9.561270 CGGATGTATGTAGACATATTTAGAGTG 57.439 37.037 5.69 0.00 40.18 3.51
712 718 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
713 719 6.712095 AGTGTAGATTCACTCATTTTGCTTCA 59.288 34.615 0.00 0.00 44.07 3.02
714 720 7.392673 AGTGTAGATTCACTCATTTTGCTTCAT 59.607 33.333 0.00 0.00 44.07 2.57
715 721 8.668353 GTGTAGATTCACTCATTTTGCTTCATA 58.332 33.333 0.00 0.00 35.68 2.15
716 722 9.399797 TGTAGATTCACTCATTTTGCTTCATAT 57.600 29.630 0.00 0.00 0.00 1.78
717 723 9.661187 GTAGATTCACTCATTTTGCTTCATATG 57.339 33.333 0.00 0.00 0.00 1.78
718 724 8.289939 AGATTCACTCATTTTGCTTCATATGT 57.710 30.769 1.90 0.00 0.00 2.29
719 725 9.399797 AGATTCACTCATTTTGCTTCATATGTA 57.600 29.630 1.90 0.00 0.00 2.29
720 726 9.661187 GATTCACTCATTTTGCTTCATATGTAG 57.339 33.333 5.04 5.04 0.00 2.74
721 727 8.565896 TTCACTCATTTTGCTTCATATGTAGT 57.434 30.769 10.61 0.00 0.00 2.73
722 728 8.201554 TCACTCATTTTGCTTCATATGTAGTC 57.798 34.615 10.61 4.54 0.00 2.59
723 729 7.823799 TCACTCATTTTGCTTCATATGTAGTCA 59.176 33.333 10.61 6.75 0.00 3.41
724 730 7.907045 CACTCATTTTGCTTCATATGTAGTCAC 59.093 37.037 10.61 0.00 0.00 3.67
725 731 7.826252 ACTCATTTTGCTTCATATGTAGTCACT 59.174 33.333 10.61 0.00 0.00 3.41
726 732 8.565896 TCATTTTGCTTCATATGTAGTCACTT 57.434 30.769 10.61 0.00 0.00 3.16
727 733 8.453320 TCATTTTGCTTCATATGTAGTCACTTG 58.547 33.333 10.61 4.90 0.00 3.16
728 734 7.744087 TTTTGCTTCATATGTAGTCACTTGT 57.256 32.000 10.61 0.00 0.00 3.16
729 735 7.744087 TTTGCTTCATATGTAGTCACTTGTT 57.256 32.000 10.61 0.00 0.00 2.83
730 736 6.726258 TGCTTCATATGTAGTCACTTGTTG 57.274 37.500 10.61 0.00 0.00 3.33
731 737 5.643348 TGCTTCATATGTAGTCACTTGTTGG 59.357 40.000 10.61 0.00 0.00 3.77
732 738 5.874810 GCTTCATATGTAGTCACTTGTTGGA 59.125 40.000 10.61 0.00 0.00 3.53
733 739 6.371548 GCTTCATATGTAGTCACTTGTTGGAA 59.628 38.462 10.61 0.00 0.00 3.53
734 740 7.066284 GCTTCATATGTAGTCACTTGTTGGAAT 59.934 37.037 10.61 0.00 0.00 3.01
735 741 8.492673 TTCATATGTAGTCACTTGTTGGAATC 57.507 34.615 1.90 0.00 0.00 2.52
736 742 7.851228 TCATATGTAGTCACTTGTTGGAATCT 58.149 34.615 1.90 0.00 0.00 2.40
737 743 8.321353 TCATATGTAGTCACTTGTTGGAATCTT 58.679 33.333 1.90 0.00 0.00 2.40
738 744 8.950210 CATATGTAGTCACTTGTTGGAATCTTT 58.050 33.333 0.00 0.00 0.00 2.52
740 746 8.918202 ATGTAGTCACTTGTTGGAATCTTTAA 57.082 30.769 0.00 0.00 0.00 1.52
741 747 8.740123 TGTAGTCACTTGTTGGAATCTTTAAA 57.260 30.769 0.00 0.00 0.00 1.52
742 748 9.179909 TGTAGTCACTTGTTGGAATCTTTAAAA 57.820 29.630 0.00 0.00 0.00 1.52
746 752 9.020813 GTCACTTGTTGGAATCTTTAAAAAGAC 57.979 33.333 7.29 0.00 46.80 3.01
747 753 8.966868 TCACTTGTTGGAATCTTTAAAAAGACT 58.033 29.630 7.29 0.00 46.80 3.24
748 754 9.586435 CACTTGTTGGAATCTTTAAAAAGACTT 57.414 29.630 7.29 4.18 46.80 3.01
841 847 7.604657 AGGAATGGAGAGAGTAATAAACGAT 57.395 36.000 0.00 0.00 0.00 3.73
842 848 8.707796 AGGAATGGAGAGAGTAATAAACGATA 57.292 34.615 0.00 0.00 0.00 2.92
898 904 3.243334 TGCAGATCTGAGCTATCGTTCAG 60.243 47.826 27.04 4.90 46.27 3.02
947 953 8.688151 GTGTCTACTTCTCTATGATAAAGGTGT 58.312 37.037 0.00 0.00 0.00 4.16
948 954 8.687242 TGTCTACTTCTCTATGATAAAGGTGTG 58.313 37.037 0.00 0.00 0.00 3.82
956 962 6.245408 TCTATGATAAAGGTGTGGTTTGCTT 58.755 36.000 0.00 0.00 0.00 3.91
966 972 4.098807 GGTGTGGTTTGCTTCCTAAAAAGA 59.901 41.667 0.00 0.00 0.00 2.52
976 982 5.070313 TGCTTCCTAAAAAGATGGTTTGCTT 59.930 36.000 0.00 0.00 0.00 3.91
980 986 7.448748 TCCTAAAAAGATGGTTTGCTTAGTC 57.551 36.000 0.00 0.00 0.00 2.59
988 994 3.537580 TGGTTTGCTTAGTCGTTGTTCT 58.462 40.909 0.00 0.00 0.00 3.01
990 996 3.289076 GTTTGCTTAGTCGTTGTTCTGC 58.711 45.455 0.00 0.00 0.00 4.26
1056 1062 3.583086 AGCCCATTACTTATCGTGCCTAT 59.417 43.478 0.00 0.00 0.00 2.57
1057 1063 4.775780 AGCCCATTACTTATCGTGCCTATA 59.224 41.667 0.00 0.00 0.00 1.31
1066 1072 7.578310 ACTTATCGTGCCTATAGTAAACTCA 57.422 36.000 0.00 0.00 0.00 3.41
1077 1088 1.621814 AGTAAACTCAACCCGCTGCTA 59.378 47.619 0.00 0.00 0.00 3.49
1113 1124 2.303022 ACATCCTCTTGACGTTGACCAT 59.697 45.455 0.00 0.00 0.00 3.55
1114 1125 3.244561 ACATCCTCTTGACGTTGACCATT 60.245 43.478 0.00 0.00 0.00 3.16
1253 1273 1.862827 GCGTTTGACTACTTCGTGGTT 59.137 47.619 0.00 0.00 0.00 3.67
1613 1646 2.358737 AAAGACCTCGCCAAGCCG 60.359 61.111 0.00 0.00 0.00 5.52
1821 1854 1.803289 CTCAGCATCACGACCTCGA 59.197 57.895 0.78 0.00 43.02 4.04
2020 2059 3.206150 CGTGGGCAGATTAATTGCTACT 58.794 45.455 16.74 0.00 41.27 2.57
2048 2087 4.961730 CCATGGGTTTGGATTTGGAGAATA 59.038 41.667 2.85 0.00 39.25 1.75
2049 2088 5.163416 CCATGGGTTTGGATTTGGAGAATAC 60.163 44.000 2.85 0.00 39.25 1.89
2050 2089 4.013728 TGGGTTTGGATTTGGAGAATACG 58.986 43.478 0.00 0.00 0.00 3.06
2051 2090 3.181490 GGGTTTGGATTTGGAGAATACGC 60.181 47.826 0.00 0.00 0.00 4.42
2052 2091 3.694566 GGTTTGGATTTGGAGAATACGCT 59.305 43.478 0.00 0.00 0.00 5.07
2053 2092 4.879545 GGTTTGGATTTGGAGAATACGCTA 59.120 41.667 0.00 0.00 0.00 4.26
2054 2093 5.531287 GGTTTGGATTTGGAGAATACGCTAT 59.469 40.000 0.00 0.00 0.00 2.97
2055 2094 6.708949 GGTTTGGATTTGGAGAATACGCTATA 59.291 38.462 0.00 0.00 0.00 1.31
2056 2095 7.227910 GGTTTGGATTTGGAGAATACGCTATAA 59.772 37.037 0.00 0.00 0.00 0.98
2248 2298 7.095691 TGCTTGAAATGATTCATTTTCGAAACC 60.096 33.333 22.14 10.63 44.70 3.27
2289 2339 9.436957 CATGTTCCACTACTACAATCTAGTTTT 57.563 33.333 0.00 0.00 0.00 2.43
2297 2347 2.433436 ACAATCTAGTTTTGGGCCGAC 58.567 47.619 0.00 0.00 0.00 4.79
2300 2350 2.467566 TCTAGTTTTGGGCCGACTTC 57.532 50.000 11.51 0.00 0.00 3.01
2313 2363 2.286418 GCCGACTTCTGATATTTTGCCG 60.286 50.000 0.00 0.00 0.00 5.69
2323 2373 6.554419 TCTGATATTTTGCCGAGTTCATTTG 58.446 36.000 0.00 0.00 0.00 2.32
2420 2470 2.049156 TCTCGTCAAGTGCCAGCG 60.049 61.111 0.00 0.00 0.00 5.18
2451 2501 2.157085 CGGTGAAAGTAAGAAACTCGGC 59.843 50.000 0.00 0.00 37.50 5.54
2455 2505 3.807622 TGAAAGTAAGAAACTCGGCAGTG 59.192 43.478 0.00 0.00 37.50 3.66
2489 2539 3.858247 CGAGTTCCTCCGGATAAAAACT 58.142 45.455 3.57 12.31 0.00 2.66
2490 2540 3.864003 CGAGTTCCTCCGGATAAAAACTC 59.136 47.826 24.38 24.38 33.61 3.01
2491 2541 3.858247 AGTTCCTCCGGATAAAAACTCG 58.142 45.455 3.57 0.00 0.00 4.18
2520 2570 2.273449 CAGGTGGGCCTCATGGAC 59.727 66.667 12.15 0.00 44.97 4.02
2526 2576 2.507944 GGCCTCATGGACGAGCAT 59.492 61.111 0.00 0.00 34.57 3.79
2531 2581 0.599466 CTCATGGACGAGCATGCGAT 60.599 55.000 13.01 0.91 34.83 4.58
2532 2582 0.877213 TCATGGACGAGCATGCGATG 60.877 55.000 13.01 8.68 34.83 3.84
2590 2640 3.877508 GCTAATGGAAACTCGGCAATACT 59.122 43.478 0.00 0.00 0.00 2.12
2605 2655 6.073440 TCGGCAATACTTGTACTTGTCTTTTC 60.073 38.462 0.00 0.00 0.00 2.29
2626 2676 2.281359 CCGAATTCGACGGGTTACG 58.719 57.895 28.76 5.02 45.65 3.18
2660 2710 5.815740 AGTACATGTGAAAAACAACTCGACT 59.184 36.000 9.11 0.00 43.61 4.18
2665 2715 8.832521 ACATGTGAAAAACAACTCGACTATTTA 58.167 29.630 0.00 0.00 43.61 1.40
2726 2776 2.415843 GTATGCCTAGCGTCCGCA 59.584 61.111 14.70 0.00 44.88 5.69
2747 2797 5.924254 CGCAGGGATAAACTCGACATAAATA 59.076 40.000 0.00 0.00 0.00 1.40
2751 2801 6.879458 AGGGATAAACTCGACATAAATATGGC 59.121 38.462 5.48 0.91 38.36 4.40
2757 2807 1.464608 CGACATAAATATGGCAGGCGG 59.535 52.381 7.04 0.00 41.89 6.13
2775 2825 2.283101 ACCCGCATGGCATGTGTT 60.283 55.556 32.21 19.87 39.07 3.32
2779 2829 1.536496 CCCGCATGGCATGTGTTATTG 60.536 52.381 32.21 19.73 39.07 1.90
2817 2881 1.609208 TCTGAAACTCAGCAAAGGGC 58.391 50.000 0.00 0.00 43.95 5.19
2836 2900 3.312697 GGGCTAAATCTTGGTCTTAAGCG 59.687 47.826 0.00 0.00 0.00 4.68
2842 2906 1.002773 TCTTGGTCTTAAGCGGGGAAC 59.997 52.381 0.00 0.00 0.00 3.62
2843 2907 0.766131 TTGGTCTTAAGCGGGGAACA 59.234 50.000 0.00 0.00 0.00 3.18
2844 2908 0.988832 TGGTCTTAAGCGGGGAACAT 59.011 50.000 0.00 0.00 0.00 2.71
2845 2909 1.339631 TGGTCTTAAGCGGGGAACATG 60.340 52.381 0.00 0.00 0.00 3.21
2846 2910 0.733150 GTCTTAAGCGGGGAACATGC 59.267 55.000 0.00 0.00 0.00 4.06
2847 2911 0.326595 TCTTAAGCGGGGAACATGCA 59.673 50.000 0.00 0.00 35.88 3.96
2848 2912 0.451783 CTTAAGCGGGGAACATGCAC 59.548 55.000 0.00 0.00 35.88 4.57
2849 2913 0.037590 TTAAGCGGGGAACATGCACT 59.962 50.000 0.00 0.00 35.88 4.40
2850 2914 0.906066 TAAGCGGGGAACATGCACTA 59.094 50.000 0.00 0.00 35.88 2.74
2851 2915 0.392998 AAGCGGGGAACATGCACTAG 60.393 55.000 0.00 0.00 35.88 2.57
2852 2916 1.078426 GCGGGGAACATGCACTAGT 60.078 57.895 0.00 0.00 33.85 2.57
2853 2917 0.177141 GCGGGGAACATGCACTAGTA 59.823 55.000 0.00 0.00 33.85 1.82
2854 2918 1.806623 GCGGGGAACATGCACTAGTAG 60.807 57.143 0.00 0.00 33.85 2.57
2855 2919 1.754803 CGGGGAACATGCACTAGTAGA 59.245 52.381 3.59 0.00 0.00 2.59
2856 2920 2.167693 CGGGGAACATGCACTAGTAGAA 59.832 50.000 3.59 0.00 0.00 2.10
2857 2921 3.369052 CGGGGAACATGCACTAGTAGAAA 60.369 47.826 3.59 0.00 0.00 2.52
2858 2922 4.585879 GGGGAACATGCACTAGTAGAAAA 58.414 43.478 3.59 0.00 0.00 2.29
2859 2923 4.395231 GGGGAACATGCACTAGTAGAAAAC 59.605 45.833 3.59 0.00 0.00 2.43
2860 2924 5.001232 GGGAACATGCACTAGTAGAAAACA 58.999 41.667 3.59 0.00 0.00 2.83
2861 2925 5.122396 GGGAACATGCACTAGTAGAAAACAG 59.878 44.000 3.59 0.00 0.00 3.16
2862 2926 5.122396 GGAACATGCACTAGTAGAAAACAGG 59.878 44.000 3.59 1.00 0.00 4.00
2863 2927 4.579869 ACATGCACTAGTAGAAAACAGGG 58.420 43.478 3.59 0.00 0.00 4.45
2864 2928 3.053831 TGCACTAGTAGAAAACAGGGC 57.946 47.619 3.59 0.00 36.65 5.19
2865 2929 2.637872 TGCACTAGTAGAAAACAGGGCT 59.362 45.455 3.59 0.00 36.89 5.19
2866 2930 3.072476 TGCACTAGTAGAAAACAGGGCTT 59.928 43.478 3.59 0.00 36.89 4.35
2867 2931 4.072839 GCACTAGTAGAAAACAGGGCTTT 58.927 43.478 3.59 0.00 34.64 3.51
2868 2932 4.083271 GCACTAGTAGAAAACAGGGCTTTG 60.083 45.833 3.59 0.00 34.64 2.77
2869 2933 4.455877 CACTAGTAGAAAACAGGGCTTTGG 59.544 45.833 3.59 0.00 0.00 3.28
2870 2934 3.595190 AGTAGAAAACAGGGCTTTGGT 57.405 42.857 0.00 0.00 0.00 3.67
2871 2935 3.910989 AGTAGAAAACAGGGCTTTGGTT 58.089 40.909 0.00 0.00 0.00 3.67
2872 2936 3.889538 AGTAGAAAACAGGGCTTTGGTTC 59.110 43.478 0.00 0.00 0.00 3.62
2873 2937 2.745968 AGAAAACAGGGCTTTGGTTCA 58.254 42.857 0.00 0.00 0.00 3.18
2874 2938 2.695147 AGAAAACAGGGCTTTGGTTCAG 59.305 45.455 0.00 0.00 0.00 3.02
2875 2939 1.413118 AAACAGGGCTTTGGTTCAGG 58.587 50.000 0.00 0.00 0.00 3.86
2876 2940 0.261696 AACAGGGCTTTGGTTCAGGT 59.738 50.000 0.00 0.00 0.00 4.00
2877 2941 0.178990 ACAGGGCTTTGGTTCAGGTC 60.179 55.000 0.00 0.00 0.00 3.85
2878 2942 1.073199 AGGGCTTTGGTTCAGGTCG 59.927 57.895 0.00 0.00 0.00 4.79
2879 2943 1.971695 GGGCTTTGGTTCAGGTCGG 60.972 63.158 0.00 0.00 0.00 4.79
2880 2944 1.971695 GGCTTTGGTTCAGGTCGGG 60.972 63.158 0.00 0.00 0.00 5.14
2881 2945 2.626780 GCTTTGGTTCAGGTCGGGC 61.627 63.158 0.00 0.00 0.00 6.13
2882 2946 1.971695 CTTTGGTTCAGGTCGGGCC 60.972 63.158 0.00 0.00 37.58 5.80
2883 2947 2.690653 CTTTGGTTCAGGTCGGGCCA 62.691 60.000 4.39 0.00 40.61 5.36
2884 2948 2.285889 TTTGGTTCAGGTCGGGCCAA 62.286 55.000 4.39 0.00 40.61 4.52
2885 2949 2.671963 GGTTCAGGTCGGGCCAAC 60.672 66.667 4.39 1.14 40.61 3.77
2886 2950 2.671963 GTTCAGGTCGGGCCAACC 60.672 66.667 16.86 16.86 40.61 3.77
2897 2961 1.291906 GGCCAACCCATTTGTTCCG 59.708 57.895 0.00 0.00 32.71 4.30
2898 2962 1.291906 GCCAACCCATTTGTTCCGG 59.708 57.895 0.00 0.00 32.71 5.14
2899 2963 1.468506 GCCAACCCATTTGTTCCGGT 61.469 55.000 0.00 0.00 32.71 5.28
2900 2964 1.044611 CCAACCCATTTGTTCCGGTT 58.955 50.000 0.00 0.00 39.18 4.44
2901 2965 1.000394 CCAACCCATTTGTTCCGGTTC 60.000 52.381 0.00 0.00 36.45 3.62
2902 2966 1.683917 CAACCCATTTGTTCCGGTTCA 59.316 47.619 0.00 0.00 36.45 3.18
2903 2967 1.616159 ACCCATTTGTTCCGGTTCAG 58.384 50.000 0.00 0.00 0.00 3.02
2904 2968 0.243636 CCCATTTGTTCCGGTTCAGC 59.756 55.000 0.00 0.00 0.00 4.26
2905 2969 0.243636 CCATTTGTTCCGGTTCAGCC 59.756 55.000 0.00 0.00 0.00 4.85
2906 2970 0.243636 CATTTGTTCCGGTTCAGCCC 59.756 55.000 0.00 0.00 0.00 5.19
2907 2971 0.178975 ATTTGTTCCGGTTCAGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
2908 2972 0.821711 TTTGTTCCGGTTCAGCCCAG 60.822 55.000 0.00 0.00 0.00 4.45
2909 2973 1.701031 TTGTTCCGGTTCAGCCCAGA 61.701 55.000 0.00 0.00 0.00 3.86
2910 2974 1.072505 GTTCCGGTTCAGCCCAGAA 59.927 57.895 0.00 0.00 0.00 3.02
2911 2975 1.072505 TTCCGGTTCAGCCCAGAAC 59.927 57.895 0.00 5.90 45.50 3.01
2922 2986 2.272146 CCAGAACCGGGACCCATG 59.728 66.667 12.15 3.12 0.00 3.66
2923 2987 2.272146 CAGAACCGGGACCCATGG 59.728 66.667 12.15 4.14 0.00 3.66
2924 2988 3.015145 AGAACCGGGACCCATGGG 61.015 66.667 30.23 30.23 42.03 4.00
2936 3000 1.693640 CCATGGGGGCATAGATCCC 59.306 63.158 2.85 0.00 43.15 3.85
2937 3001 1.300963 CATGGGGGCATAGATCCCG 59.699 63.158 0.00 0.00 44.86 5.14
2938 3002 1.925455 ATGGGGGCATAGATCCCGG 60.925 63.158 0.00 0.00 44.86 5.73
2939 3003 2.529389 GGGGGCATAGATCCCGGT 60.529 66.667 0.00 0.00 44.86 5.28
2940 3004 2.154074 GGGGGCATAGATCCCGGTT 61.154 63.158 0.00 0.00 44.86 4.44
2941 3005 1.375326 GGGGCATAGATCCCGGTTC 59.625 63.158 0.00 0.00 44.86 3.62
2942 3006 1.004918 GGGCATAGATCCCGGTTCG 60.005 63.158 0.00 0.00 33.43 3.95
2943 3007 1.746517 GGCATAGATCCCGGTTCGT 59.253 57.895 0.00 0.00 0.00 3.85
2944 3008 0.600255 GGCATAGATCCCGGTTCGTG 60.600 60.000 0.00 3.52 0.00 4.35
2945 3009 0.387929 GCATAGATCCCGGTTCGTGA 59.612 55.000 0.00 0.00 0.00 4.35
2946 3010 1.603172 GCATAGATCCCGGTTCGTGAG 60.603 57.143 0.00 0.00 0.00 3.51
2947 3011 1.000163 CATAGATCCCGGTTCGTGAGG 60.000 57.143 0.00 0.00 0.00 3.86
2948 3012 1.389609 TAGATCCCGGTTCGTGAGGC 61.390 60.000 0.00 0.00 0.00 4.70
2949 3013 3.735037 GATCCCGGTTCGTGAGGCC 62.735 68.421 0.00 0.00 0.00 5.19
2951 3015 4.760047 CCCGGTTCGTGAGGCCAG 62.760 72.222 5.01 0.00 0.00 4.85
2952 3016 4.760047 CCGGTTCGTGAGGCCAGG 62.760 72.222 5.01 0.00 0.00 4.45
2953 3017 4.003788 CGGTTCGTGAGGCCAGGT 62.004 66.667 5.01 0.00 0.00 4.00
2954 3018 2.358737 GGTTCGTGAGGCCAGGTG 60.359 66.667 5.01 0.00 0.00 4.00
2955 3019 2.358737 GTTCGTGAGGCCAGGTGG 60.359 66.667 5.01 0.00 38.53 4.61
2982 3046 2.044053 CCATCGTGGGGCATTGGT 60.044 61.111 0.00 0.00 32.67 3.67
2983 3047 2.120909 CCATCGTGGGGCATTGGTC 61.121 63.158 0.00 0.00 32.67 4.02
2984 3048 1.077501 CATCGTGGGGCATTGGTCT 60.078 57.895 0.00 0.00 0.00 3.85
2985 3049 1.097547 CATCGTGGGGCATTGGTCTC 61.098 60.000 0.00 0.00 0.00 3.36
2986 3050 2.593468 ATCGTGGGGCATTGGTCTCG 62.593 60.000 0.00 0.00 0.00 4.04
2987 3051 2.438434 GTGGGGCATTGGTCTCGG 60.438 66.667 0.00 0.00 0.00 4.63
2988 3052 2.933287 TGGGGCATTGGTCTCGGT 60.933 61.111 0.00 0.00 0.00 4.69
2989 3053 2.355115 GGGGCATTGGTCTCGGTT 59.645 61.111 0.00 0.00 0.00 4.44
2990 3054 1.749258 GGGGCATTGGTCTCGGTTC 60.749 63.158 0.00 0.00 0.00 3.62
2991 3055 1.002624 GGGCATTGGTCTCGGTTCA 60.003 57.895 0.00 0.00 0.00 3.18
2992 3056 0.394352 GGGCATTGGTCTCGGTTCAT 60.394 55.000 0.00 0.00 0.00 2.57
2993 3057 1.017387 GGCATTGGTCTCGGTTCATC 58.983 55.000 0.00 0.00 0.00 2.92
2994 3058 1.407437 GGCATTGGTCTCGGTTCATCT 60.407 52.381 0.00 0.00 0.00 2.90
2995 3059 1.667724 GCATTGGTCTCGGTTCATCTG 59.332 52.381 0.00 0.00 0.00 2.90
2996 3060 2.283298 CATTGGTCTCGGTTCATCTGG 58.717 52.381 0.00 0.00 0.00 3.86
2997 3061 0.036388 TTGGTCTCGGTTCATCTGGC 60.036 55.000 0.00 0.00 0.00 4.85
2998 3062 1.191489 TGGTCTCGGTTCATCTGGCA 61.191 55.000 0.00 0.00 0.00 4.92
2999 3063 0.741221 GGTCTCGGTTCATCTGGCAC 60.741 60.000 0.00 0.00 0.00 5.01
3000 3064 0.741221 GTCTCGGTTCATCTGGCACC 60.741 60.000 0.00 0.00 0.00 5.01
3001 3065 0.904865 TCTCGGTTCATCTGGCACCT 60.905 55.000 0.00 0.00 0.00 4.00
3002 3066 0.460987 CTCGGTTCATCTGGCACCTC 60.461 60.000 0.00 0.00 0.00 3.85
3003 3067 0.904865 TCGGTTCATCTGGCACCTCT 60.905 55.000 0.00 0.00 0.00 3.69
3004 3068 0.460987 CGGTTCATCTGGCACCTCTC 60.461 60.000 0.00 0.00 0.00 3.20
3005 3069 0.460987 GGTTCATCTGGCACCTCTCG 60.461 60.000 0.00 0.00 0.00 4.04
3006 3070 0.532573 GTTCATCTGGCACCTCTCGA 59.467 55.000 0.00 0.00 0.00 4.04
3007 3071 1.066858 GTTCATCTGGCACCTCTCGAA 60.067 52.381 0.00 0.00 0.00 3.71
3008 3072 0.532573 TCATCTGGCACCTCTCGAAC 59.467 55.000 0.00 0.00 0.00 3.95
3009 3073 0.460987 CATCTGGCACCTCTCGAACC 60.461 60.000 0.00 0.00 0.00 3.62
3010 3074 1.949847 ATCTGGCACCTCTCGAACCG 61.950 60.000 0.00 0.00 0.00 4.44
3011 3075 3.649277 CTGGCACCTCTCGAACCGG 62.649 68.421 0.00 0.00 0.00 5.28
3012 3076 4.452733 GGCACCTCTCGAACCGGG 62.453 72.222 6.32 0.00 0.00 5.73
3013 3077 3.379445 GCACCTCTCGAACCGGGA 61.379 66.667 6.32 0.00 34.26 5.14
3014 3078 2.572284 CACCTCTCGAACCGGGAC 59.428 66.667 6.32 0.00 31.17 4.46
3015 3079 2.679287 ACCTCTCGAACCGGGACC 60.679 66.667 6.32 0.00 31.17 4.46
3016 3080 2.678934 CCTCTCGAACCGGGACCA 60.679 66.667 6.32 0.00 31.17 4.02
3017 3081 2.280552 CCTCTCGAACCGGGACCAA 61.281 63.158 6.32 0.00 31.17 3.67
3018 3082 1.614241 CCTCTCGAACCGGGACCAAT 61.614 60.000 6.32 0.00 31.17 3.16
3019 3083 0.460284 CTCTCGAACCGGGACCAATG 60.460 60.000 6.32 0.00 31.17 2.82
3020 3084 1.189524 TCTCGAACCGGGACCAATGT 61.190 55.000 6.32 0.00 28.48 2.71
3021 3085 1.004320 TCGAACCGGGACCAATGTG 60.004 57.895 6.32 0.00 0.00 3.21
3022 3086 2.686816 CGAACCGGGACCAATGTGC 61.687 63.158 6.32 0.00 0.00 4.57
3028 3092 2.045926 GGACCAATGTGCCTCGCT 60.046 61.111 0.00 0.00 0.00 4.93
3029 3093 2.109126 GGACCAATGTGCCTCGCTC 61.109 63.158 0.00 0.00 0.00 5.03
3030 3094 2.045926 ACCAATGTGCCTCGCTCC 60.046 61.111 0.00 0.00 0.00 4.70
3031 3095 2.270205 CCAATGTGCCTCGCTCCT 59.730 61.111 0.00 0.00 0.00 3.69
3032 3096 2.110967 CCAATGTGCCTCGCTCCTG 61.111 63.158 0.00 0.00 0.00 3.86
3033 3097 2.110967 CAATGTGCCTCGCTCCTGG 61.111 63.158 0.00 0.00 0.00 4.45
3048 3112 2.363760 TGGCCCCACCATCATTGG 59.636 61.111 0.00 0.00 46.36 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.006922 GGACTTGCAAGCACTTGGC 60.007 57.895 26.27 1.93 40.74 4.52
12 13 0.183492 ACCTCAAGGACTTGCAAGCA 59.817 50.000 26.27 2.80 40.24 3.91
98 100 1.603931 GCCAAGGCTCTGAAAACAAGC 60.604 52.381 3.29 0.00 38.26 4.01
99 101 1.682854 TGCCAAGGCTCTGAAAACAAG 59.317 47.619 12.96 0.00 42.51 3.16
100 102 1.774110 TGCCAAGGCTCTGAAAACAA 58.226 45.000 12.96 0.00 42.51 2.83
109 111 0.897401 AGGAAAGCTTGCCAAGGCTC 60.897 55.000 26.03 4.05 42.51 4.70
112 114 1.291272 GCAGGAAAGCTTGCCAAGG 59.709 57.895 26.03 14.97 40.89 3.61
166 168 9.454859 CTGAAATCCTATGTTCTTCCTAGTTTT 57.545 33.333 0.00 0.00 0.00 2.43
171 173 8.553085 TGATCTGAAATCCTATGTTCTTCCTA 57.447 34.615 0.00 0.00 0.00 2.94
190 192 5.404466 ACTTCTCTTCAGAGGTTGATCTG 57.596 43.478 3.96 0.00 46.70 2.90
191 193 6.432403 AAACTTCTCTTCAGAGGTTGATCT 57.568 37.500 3.96 0.00 45.72 2.75
192 194 7.443879 AGAAAAACTTCTCTTCAGAGGTTGATC 59.556 37.037 3.96 3.32 45.72 2.92
198 200 6.765512 ACTTGAGAAAAACTTCTCTTCAGAGG 59.234 38.462 14.23 0.00 45.77 3.69
211 213 8.665685 TCTTTCTTGTCTGTACTTGAGAAAAAC 58.334 33.333 0.00 0.00 33.52 2.43
212 214 8.786826 TCTTTCTTGTCTGTACTTGAGAAAAA 57.213 30.769 0.00 2.14 33.52 1.94
213 215 8.665685 GTTCTTTCTTGTCTGTACTTGAGAAAA 58.334 33.333 0.00 0.00 33.52 2.29
214 216 8.041323 AGTTCTTTCTTGTCTGTACTTGAGAAA 58.959 33.333 0.00 3.03 33.21 2.52
219 222 8.873215 TTCTAGTTCTTTCTTGTCTGTACTTG 57.127 34.615 0.00 0.00 0.00 3.16
227 230 8.608844 TTCCTCATTTCTAGTTCTTTCTTGTC 57.391 34.615 0.00 0.00 0.00 3.18
399 402 2.203082 TGAGCGAGGGGATCATCCG 61.203 63.158 0.00 0.00 35.82 4.18
400 403 1.369321 GTGAGCGAGGGGATCATCC 59.631 63.158 0.00 0.00 44.00 3.51
412 415 2.734673 GCTTGAAGCGAGGTGAGCG 61.735 63.158 0.00 0.00 40.04 5.03
431 434 2.285977 GAACGACCTCACAACCTTTGT 58.714 47.619 0.00 0.00 46.75 2.83
432 435 1.602377 GGAACGACCTCACAACCTTTG 59.398 52.381 0.00 0.00 35.41 2.77
433 436 1.963172 GGAACGACCTCACAACCTTT 58.037 50.000 0.00 0.00 35.41 3.11
434 437 3.700198 GGAACGACCTCACAACCTT 57.300 52.632 0.00 0.00 35.41 3.50
464 467 2.336088 CCAAGCTGCCAACAACCG 59.664 61.111 0.00 0.00 0.00 4.44
477 480 0.304705 GTCACTGTCAACGTGCCAAG 59.695 55.000 0.00 0.00 32.54 3.61
485 488 0.301687 CAGCACGTGTCACTGTCAAC 59.698 55.000 18.38 0.00 0.00 3.18
486 489 1.428370 GCAGCACGTGTCACTGTCAA 61.428 55.000 18.38 0.00 33.87 3.18
490 493 0.717784 CTATGCAGCACGTGTCACTG 59.282 55.000 18.38 16.39 34.48 3.66
496 499 1.560923 GGAGTACTATGCAGCACGTG 58.439 55.000 12.28 12.28 0.00 4.49
498 501 0.100682 ACGGAGTACTATGCAGCACG 59.899 55.000 0.00 0.00 41.94 5.34
515 518 9.807386 AAAAGAACTCATATTTAGAAACGAACG 57.193 29.630 0.00 0.00 0.00 3.95
545 548 9.382244 GCTCCGTATGTTGTTCATATTAAAATC 57.618 33.333 0.00 0.00 40.54 2.17
546 549 8.898761 TGCTCCGTATGTTGTTCATATTAAAAT 58.101 29.630 0.00 0.00 40.54 1.82
547 550 8.270080 TGCTCCGTATGTTGTTCATATTAAAA 57.730 30.769 0.00 0.00 40.54 1.52
548 551 7.851387 TGCTCCGTATGTTGTTCATATTAAA 57.149 32.000 0.00 0.00 40.54 1.52
549 552 7.851387 TTGCTCCGTATGTTGTTCATATTAA 57.149 32.000 0.00 0.00 40.54 1.40
550 553 7.851387 TTTGCTCCGTATGTTGTTCATATTA 57.149 32.000 0.00 0.00 40.54 0.98
560 563 4.323417 TCACTCATTTTGCTCCGTATGTT 58.677 39.130 0.00 0.00 0.00 2.71
568 574 8.976986 AAAATGTAGATTCACTCATTTTGCTC 57.023 30.769 17.26 0.00 40.40 4.26
601 607 5.455056 AGAAACGGAGCGACTATATTGAT 57.545 39.130 0.00 0.00 0.00 2.57
602 608 4.913335 AGAAACGGAGCGACTATATTGA 57.087 40.909 0.00 0.00 0.00 2.57
610 616 7.460751 AACTTATATTTAGAAACGGAGCGAC 57.539 36.000 0.00 0.00 0.00 5.19
611 617 8.483307 AAAACTTATATTTAGAAACGGAGCGA 57.517 30.769 0.00 0.00 0.00 4.93
648 654 9.653287 CATACATCCGTATGTTATAGTCCATTT 57.347 33.333 0.00 0.00 46.70 2.32
664 670 9.298250 ACTCTAAATATGTCTACATACATCCGT 57.702 33.333 4.98 0.00 41.15 4.69
665 671 9.561270 CACTCTAAATATGTCTACATACATCCG 57.439 37.037 4.98 0.00 41.15 4.18
689 695 6.902341 TGAAGCAAAATGAGTGAATCTACAC 58.098 36.000 0.00 0.00 40.60 2.90
690 696 7.692460 ATGAAGCAAAATGAGTGAATCTACA 57.308 32.000 0.00 0.00 0.00 2.74
691 697 9.661187 CATATGAAGCAAAATGAGTGAATCTAC 57.339 33.333 0.00 0.00 0.00 2.59
692 698 9.399797 ACATATGAAGCAAAATGAGTGAATCTA 57.600 29.630 10.38 0.00 0.00 1.98
693 699 8.289939 ACATATGAAGCAAAATGAGTGAATCT 57.710 30.769 10.38 0.00 0.00 2.40
694 700 9.661187 CTACATATGAAGCAAAATGAGTGAATC 57.339 33.333 10.38 0.00 0.00 2.52
695 701 9.182214 ACTACATATGAAGCAAAATGAGTGAAT 57.818 29.630 10.38 0.00 0.00 2.57
696 702 8.565896 ACTACATATGAAGCAAAATGAGTGAA 57.434 30.769 10.38 0.00 0.00 3.18
697 703 7.823799 TGACTACATATGAAGCAAAATGAGTGA 59.176 33.333 10.38 0.00 0.00 3.41
698 704 7.907045 GTGACTACATATGAAGCAAAATGAGTG 59.093 37.037 10.38 0.00 0.00 3.51
699 705 7.826252 AGTGACTACATATGAAGCAAAATGAGT 59.174 33.333 10.38 0.00 0.00 3.41
700 706 8.206325 AGTGACTACATATGAAGCAAAATGAG 57.794 34.615 10.38 0.00 0.00 2.90
701 707 8.453320 CAAGTGACTACATATGAAGCAAAATGA 58.547 33.333 10.38 0.00 0.00 2.57
702 708 8.239314 ACAAGTGACTACATATGAAGCAAAATG 58.761 33.333 10.38 3.10 0.00 2.32
703 709 8.340618 ACAAGTGACTACATATGAAGCAAAAT 57.659 30.769 10.38 0.00 0.00 1.82
704 710 7.744087 ACAAGTGACTACATATGAAGCAAAA 57.256 32.000 10.38 0.00 0.00 2.44
705 711 7.308529 CCAACAAGTGACTACATATGAAGCAAA 60.309 37.037 10.38 0.00 0.00 3.68
706 712 6.149308 CCAACAAGTGACTACATATGAAGCAA 59.851 38.462 10.38 0.00 0.00 3.91
707 713 5.643348 CCAACAAGTGACTACATATGAAGCA 59.357 40.000 10.38 0.00 0.00 3.91
708 714 5.874810 TCCAACAAGTGACTACATATGAAGC 59.125 40.000 10.38 0.00 0.00 3.86
709 715 7.905604 TTCCAACAAGTGACTACATATGAAG 57.094 36.000 10.38 0.00 0.00 3.02
710 716 8.321353 AGATTCCAACAAGTGACTACATATGAA 58.679 33.333 10.38 0.00 0.00 2.57
711 717 7.851228 AGATTCCAACAAGTGACTACATATGA 58.149 34.615 10.38 0.00 0.00 2.15
712 718 8.498054 AAGATTCCAACAAGTGACTACATATG 57.502 34.615 0.00 0.00 0.00 1.78
715 721 8.918202 TTAAAGATTCCAACAAGTGACTACAT 57.082 30.769 0.00 0.00 0.00 2.29
716 722 8.740123 TTTAAAGATTCCAACAAGTGACTACA 57.260 30.769 0.00 0.00 0.00 2.74
719 725 8.966868 TCTTTTTAAAGATTCCAACAAGTGACT 58.033 29.630 0.89 0.00 39.95 3.41
720 726 9.020813 GTCTTTTTAAAGATTCCAACAAGTGAC 57.979 33.333 8.07 0.00 45.83 3.67
721 727 8.966868 AGTCTTTTTAAAGATTCCAACAAGTGA 58.033 29.630 8.07 0.00 45.83 3.41
722 728 9.586435 AAGTCTTTTTAAAGATTCCAACAAGTG 57.414 29.630 8.07 0.00 45.83 3.16
737 743 9.434420 TCCGTTCCGAAATATAAGTCTTTTTAA 57.566 29.630 0.00 0.00 0.00 1.52
738 744 9.090692 CTCCGTTCCGAAATATAAGTCTTTTTA 57.909 33.333 0.00 0.00 0.00 1.52
739 745 7.065443 CCTCCGTTCCGAAATATAAGTCTTTTT 59.935 37.037 0.00 0.00 0.00 1.94
740 746 6.537660 CCTCCGTTCCGAAATATAAGTCTTTT 59.462 38.462 0.00 0.00 0.00 2.27
741 747 6.047231 CCTCCGTTCCGAAATATAAGTCTTT 58.953 40.000 0.00 0.00 0.00 2.52
742 748 5.452917 CCCTCCGTTCCGAAATATAAGTCTT 60.453 44.000 0.00 0.00 0.00 3.01
743 749 4.038883 CCCTCCGTTCCGAAATATAAGTCT 59.961 45.833 0.00 0.00 0.00 3.24
744 750 4.038402 TCCCTCCGTTCCGAAATATAAGTC 59.962 45.833 0.00 0.00 0.00 3.01
745 751 3.962718 TCCCTCCGTTCCGAAATATAAGT 59.037 43.478 0.00 0.00 0.00 2.24
746 752 4.038883 ACTCCCTCCGTTCCGAAATATAAG 59.961 45.833 0.00 0.00 0.00 1.73
747 753 3.962718 ACTCCCTCCGTTCCGAAATATAA 59.037 43.478 0.00 0.00 0.00 0.98
748 754 3.569491 ACTCCCTCCGTTCCGAAATATA 58.431 45.455 0.00 0.00 0.00 0.86
749 755 2.395619 ACTCCCTCCGTTCCGAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
750 756 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
751 757 1.479730 GTACTCCCTCCGTTCCGAAAT 59.520 52.381 0.00 0.00 0.00 2.17
752 758 0.890683 GTACTCCCTCCGTTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
753 759 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
754 760 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
755 761 0.384669 GATGTACTCCCTCCGTTCCG 59.615 60.000 0.00 0.00 0.00 4.30
756 762 0.751452 GGATGTACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 38.19 3.62
757 763 0.384669 CGGATGTACTCCCTCCGTTC 59.615 60.000 14.50 0.00 45.30 3.95
758 764 2.501492 CGGATGTACTCCCTCCGTT 58.499 57.895 14.50 0.00 45.30 4.44
759 765 4.254721 CGGATGTACTCCCTCCGT 57.745 61.111 14.50 0.00 45.30 4.69
761 767 2.595238 ACATACGGATGTACTCCCTCC 58.405 52.381 12.79 0.00 44.77 4.30
762 768 4.396522 ACTACATACGGATGTACTCCCTC 58.603 47.826 16.71 0.00 44.77 4.30
763 769 4.450305 ACTACATACGGATGTACTCCCT 57.550 45.455 16.71 0.00 44.77 4.20
764 770 5.526506 AAACTACATACGGATGTACTCCC 57.473 43.478 16.71 0.00 44.77 4.30
765 771 7.655490 ACATAAACTACATACGGATGTACTCC 58.345 38.462 16.71 0.00 44.77 3.85
822 828 7.712639 ACGTACTATCGTTTATTACTCTCTCCA 59.287 37.037 0.00 0.00 41.37 3.86
898 904 1.014352 ACAACCGAGACAAGTTGCAC 58.986 50.000 1.81 0.00 45.79 4.57
947 953 4.898861 ACCATCTTTTTAGGAAGCAAACCA 59.101 37.500 0.00 0.00 0.00 3.67
948 954 5.468540 ACCATCTTTTTAGGAAGCAAACC 57.531 39.130 0.00 0.00 0.00 3.27
956 962 6.148811 CGACTAAGCAAACCATCTTTTTAGGA 59.851 38.462 0.00 0.00 0.00 2.94
966 972 4.024048 CAGAACAACGACTAAGCAAACCAT 60.024 41.667 0.00 0.00 0.00 3.55
976 982 8.766000 TTGAATAATTAGCAGAACAACGACTA 57.234 30.769 0.00 0.00 0.00 2.59
1025 1031 9.268268 CACGATAAGTAATGGGCTAATAAGAAA 57.732 33.333 0.00 0.00 0.00 2.52
1026 1032 7.386848 GCACGATAAGTAATGGGCTAATAAGAA 59.613 37.037 0.00 0.00 0.00 2.52
1027 1033 6.872020 GCACGATAAGTAATGGGCTAATAAGA 59.128 38.462 0.00 0.00 0.00 2.10
1028 1034 6.092259 GGCACGATAAGTAATGGGCTAATAAG 59.908 42.308 0.00 0.00 0.00 1.73
1049 1055 4.117685 CGGGTTGAGTTTACTATAGGCAC 58.882 47.826 4.43 0.00 0.00 5.01
1056 1062 1.621814 AGCAGCGGGTTGAGTTTACTA 59.378 47.619 0.00 0.00 0.00 1.82
1057 1063 0.396811 AGCAGCGGGTTGAGTTTACT 59.603 50.000 0.00 0.00 0.00 2.24
1077 1088 4.079443 AGAGGATGTACTACTCAGGAAGCT 60.079 45.833 12.34 0.00 33.76 3.74
1113 1124 0.740868 CTCTGCGATGGGAAAGCGAA 60.741 55.000 0.00 0.00 41.20 4.70
1114 1125 1.153568 CTCTGCGATGGGAAAGCGA 60.154 57.895 0.00 0.00 41.20 4.93
1228 1248 0.796927 GAAGTAGTCAAACGCCTGGC 59.203 55.000 9.11 9.11 0.00 4.85
1229 1249 1.068474 CGAAGTAGTCAAACGCCTGG 58.932 55.000 0.00 0.00 0.00 4.45
1253 1273 0.390866 ACGTCGCCTCGAAGTCTAGA 60.391 55.000 2.23 0.00 44.06 2.43
1288 1308 1.145945 TGATCTCCTGCGGGTAGATCT 59.854 52.381 32.02 15.85 41.46 2.75
1613 1646 2.270986 CCAGTGGTTGAAGCAGGGC 61.271 63.158 0.00 0.00 0.00 5.19
1821 1854 1.306654 TTACCTGAGGCGATGGGGT 60.307 57.895 0.00 0.00 0.00 4.95
1896 1935 4.320456 CACCACGCCACCTCTGCT 62.320 66.667 0.00 0.00 0.00 4.24
2048 2087 9.234384 GATACTCGCACATATAATTTATAGCGT 57.766 33.333 19.45 10.11 43.82 5.07
2049 2088 9.233232 TGATACTCGCACATATAATTTATAGCG 57.767 33.333 16.43 16.43 44.66 4.26
2053 2092 9.587772 GGAGTGATACTCGCACATATAATTTAT 57.412 33.333 3.17 0.00 45.96 1.40
2054 2093 8.581578 TGGAGTGATACTCGCACATATAATTTA 58.418 33.333 3.17 0.00 45.96 1.40
2055 2094 7.441836 TGGAGTGATACTCGCACATATAATTT 58.558 34.615 3.17 0.00 45.96 1.82
2056 2095 6.993079 TGGAGTGATACTCGCACATATAATT 58.007 36.000 3.17 0.00 45.96 1.40
2061 2110 2.034685 GCTGGAGTGATACTCGCACATA 59.965 50.000 3.17 0.00 45.96 2.29
2248 2298 5.577945 GTGGAACATGCAATTTTCTACCATG 59.422 40.000 9.38 0.00 44.52 3.66
2289 2339 3.278574 CAAAATATCAGAAGTCGGCCCA 58.721 45.455 0.00 0.00 0.00 5.36
2297 2347 5.801350 TGAACTCGGCAAAATATCAGAAG 57.199 39.130 0.00 0.00 0.00 2.85
2300 2350 6.554419 TCAAATGAACTCGGCAAAATATCAG 58.446 36.000 0.00 0.00 0.00 2.90
2313 2363 2.869192 GAGCTCCCGATCAAATGAACTC 59.131 50.000 0.87 0.00 0.00 3.01
2323 2373 2.174319 GTTTGCCGAGCTCCCGATC 61.174 63.158 8.47 0.00 0.00 3.69
2374 2424 4.884164 AGTTTCCCAAGTTTCTTCTCACTG 59.116 41.667 0.00 0.00 0.00 3.66
2414 2464 2.391389 CCGAGTCCTTTTCGCTGGC 61.391 63.158 0.00 0.00 36.76 4.85
2420 2470 5.295152 TCTTACTTTCACCGAGTCCTTTTC 58.705 41.667 0.00 0.00 0.00 2.29
2451 2501 0.249868 TCGGTGAACTTGAGGCACTG 60.250 55.000 0.00 0.00 41.55 3.66
2455 2505 1.149148 GAACTCGGTGAACTTGAGGC 58.851 55.000 7.72 0.00 34.03 4.70
2489 2539 2.594303 CCTGCCAGTGTTTGCCGA 60.594 61.111 0.00 0.00 0.00 5.54
2490 2540 2.906897 ACCTGCCAGTGTTTGCCG 60.907 61.111 0.00 0.00 0.00 5.69
2491 2541 2.730094 CACCTGCCAGTGTTTGCC 59.270 61.111 0.00 0.00 32.89 4.52
2513 2563 0.877213 CATCGCATGCTCGTCCATGA 60.877 55.000 17.13 2.92 44.12 3.07
2520 2570 1.086067 ACACCTTCATCGCATGCTCG 61.086 55.000 17.13 0.45 0.00 5.03
2526 2576 0.324614 ACCATCACACCTTCATCGCA 59.675 50.000 0.00 0.00 0.00 5.10
2531 2581 1.434188 AGTCCACCATCACACCTTCA 58.566 50.000 0.00 0.00 0.00 3.02
2532 2582 3.055094 ACATAGTCCACCATCACACCTTC 60.055 47.826 0.00 0.00 0.00 3.46
2590 2640 7.095940 CGAATTCGGTAGAAAAGACAAGTACAA 60.096 37.037 20.16 0.00 40.15 2.41
2605 2655 2.454055 GTAACCCGTCGAATTCGGTAG 58.546 52.381 26.47 17.14 45.63 3.18
2704 2754 1.571919 GGACGCTAGGCATACACTTG 58.428 55.000 0.00 0.00 0.00 3.16
2726 2776 6.879458 GCCATATTTATGTCGAGTTTATCCCT 59.121 38.462 0.00 0.00 31.82 4.20
2757 2807 1.029408 TAACACATGCCATGCGGGTC 61.029 55.000 4.17 0.00 39.65 4.46
2770 2820 8.547481 TCATTATAGGGAGACTCAATAACACA 57.453 34.615 4.53 0.00 0.00 3.72
2771 2821 8.643324 ACTCATTATAGGGAGACTCAATAACAC 58.357 37.037 4.53 0.00 35.17 3.32
2775 2825 9.083422 CAGAACTCATTATAGGGAGACTCAATA 57.917 37.037 4.53 0.00 35.17 1.90
2779 2829 7.589958 TTCAGAACTCATTATAGGGAGACTC 57.410 40.000 9.07 0.00 35.17 3.36
2817 2881 3.877508 CCCCGCTTAAGACCAAGATTTAG 59.122 47.826 6.67 0.00 0.00 1.85
2836 2900 3.906720 TTCTACTAGTGCATGTTCCCC 57.093 47.619 5.39 0.00 0.00 4.81
2842 2906 3.375299 GCCCTGTTTTCTACTAGTGCATG 59.625 47.826 5.39 0.00 0.00 4.06
2843 2907 3.264450 AGCCCTGTTTTCTACTAGTGCAT 59.736 43.478 5.39 0.00 0.00 3.96
2844 2908 2.637872 AGCCCTGTTTTCTACTAGTGCA 59.362 45.455 5.39 0.00 0.00 4.57
2845 2909 3.336138 AGCCCTGTTTTCTACTAGTGC 57.664 47.619 5.39 0.00 0.00 4.40
2846 2910 4.455877 CCAAAGCCCTGTTTTCTACTAGTG 59.544 45.833 5.39 0.00 0.00 2.74
2847 2911 4.104261 ACCAAAGCCCTGTTTTCTACTAGT 59.896 41.667 0.00 0.00 0.00 2.57
2848 2912 4.652822 ACCAAAGCCCTGTTTTCTACTAG 58.347 43.478 0.00 0.00 0.00 2.57
2849 2913 4.717279 ACCAAAGCCCTGTTTTCTACTA 57.283 40.909 0.00 0.00 0.00 1.82
2850 2914 3.595190 ACCAAAGCCCTGTTTTCTACT 57.405 42.857 0.00 0.00 0.00 2.57
2851 2915 3.634910 TGAACCAAAGCCCTGTTTTCTAC 59.365 43.478 0.00 0.00 0.00 2.59
2852 2916 3.888930 CTGAACCAAAGCCCTGTTTTCTA 59.111 43.478 0.00 0.00 0.00 2.10
2853 2917 2.695147 CTGAACCAAAGCCCTGTTTTCT 59.305 45.455 0.00 0.00 0.00 2.52
2854 2918 2.224042 CCTGAACCAAAGCCCTGTTTTC 60.224 50.000 0.00 0.00 0.00 2.29
2855 2919 1.762370 CCTGAACCAAAGCCCTGTTTT 59.238 47.619 0.00 0.00 0.00 2.43
2856 2920 1.342975 ACCTGAACCAAAGCCCTGTTT 60.343 47.619 0.00 0.00 0.00 2.83
2857 2921 0.261696 ACCTGAACCAAAGCCCTGTT 59.738 50.000 0.00 0.00 0.00 3.16
2858 2922 0.178990 GACCTGAACCAAAGCCCTGT 60.179 55.000 0.00 0.00 0.00 4.00
2859 2923 1.237285 CGACCTGAACCAAAGCCCTG 61.237 60.000 0.00 0.00 0.00 4.45
2860 2924 1.073199 CGACCTGAACCAAAGCCCT 59.927 57.895 0.00 0.00 0.00 5.19
2861 2925 1.971695 CCGACCTGAACCAAAGCCC 60.972 63.158 0.00 0.00 0.00 5.19
2862 2926 1.971695 CCCGACCTGAACCAAAGCC 60.972 63.158 0.00 0.00 0.00 4.35
2863 2927 2.626780 GCCCGACCTGAACCAAAGC 61.627 63.158 0.00 0.00 0.00 3.51
2864 2928 1.971695 GGCCCGACCTGAACCAAAG 60.972 63.158 0.00 0.00 34.51 2.77
2865 2929 2.114411 GGCCCGACCTGAACCAAA 59.886 61.111 0.00 0.00 34.51 3.28
2866 2930 2.758207 TTGGCCCGACCTGAACCAA 61.758 57.895 0.00 0.00 40.22 3.67
2867 2931 3.172106 TTGGCCCGACCTGAACCA 61.172 61.111 0.00 0.00 40.22 3.67
2868 2932 2.671963 GTTGGCCCGACCTGAACC 60.672 66.667 0.00 0.00 40.22 3.62
2869 2933 2.671963 GGTTGGCCCGACCTGAAC 60.672 66.667 13.41 4.90 40.22 3.18
2870 2934 3.961414 GGGTTGGCCCGACCTGAA 61.961 66.667 19.87 0.00 46.51 3.02
2879 2943 1.291906 CGGAACAAATGGGTTGGCC 59.708 57.895 0.00 0.00 41.97 5.36
2880 2944 1.291906 CCGGAACAAATGGGTTGGC 59.708 57.895 0.00 0.00 41.97 4.52
2881 2945 1.000394 GAACCGGAACAAATGGGTTGG 60.000 52.381 9.46 0.00 42.54 3.77
2882 2946 1.683917 TGAACCGGAACAAATGGGTTG 59.316 47.619 9.46 0.00 42.54 3.77
2883 2947 1.960689 CTGAACCGGAACAAATGGGTT 59.039 47.619 9.46 0.00 45.02 4.11
2884 2948 1.616159 CTGAACCGGAACAAATGGGT 58.384 50.000 9.46 0.00 0.00 4.51
2885 2949 0.243636 GCTGAACCGGAACAAATGGG 59.756 55.000 9.46 0.00 0.00 4.00
2886 2950 0.243636 GGCTGAACCGGAACAAATGG 59.756 55.000 9.46 0.00 0.00 3.16
2887 2951 0.243636 GGGCTGAACCGGAACAAATG 59.756 55.000 9.46 0.00 40.62 2.32
2888 2952 0.178975 TGGGCTGAACCGGAACAAAT 60.179 50.000 9.46 0.00 40.62 2.32
2889 2953 0.821711 CTGGGCTGAACCGGAACAAA 60.822 55.000 9.46 0.00 39.34 2.83
2890 2954 1.228124 CTGGGCTGAACCGGAACAA 60.228 57.895 9.46 0.00 39.34 2.83
2891 2955 2.144078 TCTGGGCTGAACCGGAACA 61.144 57.895 9.46 6.83 42.82 3.18
2892 2956 2.747686 TCTGGGCTGAACCGGAAC 59.252 61.111 9.46 1.34 42.82 3.62
2894 2958 2.747686 GTTCTGGGCTGAACCGGA 59.252 61.111 9.46 0.00 44.05 5.14
2898 2962 2.359975 CCCGGTTCTGGGCTGAAC 60.360 66.667 0.00 12.91 43.70 3.18
2905 2969 2.272146 CATGGGTCCCGGTTCTGG 59.728 66.667 2.65 0.00 0.00 3.86
2906 2970 2.272146 CCATGGGTCCCGGTTCTG 59.728 66.667 2.85 0.00 0.00 3.02
2907 2971 3.015145 CCCATGGGTCCCGGTTCT 61.015 66.667 23.93 0.00 0.00 3.01
2908 2972 4.123545 CCCCATGGGTCCCGGTTC 62.124 72.222 29.33 0.00 38.25 3.62
2918 2982 1.693640 GGGATCTATGCCCCCATGG 59.306 63.158 4.14 4.14 39.81 3.66
2919 2983 1.300963 CGGGATCTATGCCCCCATG 59.699 63.158 0.00 0.00 42.92 3.66
2920 2984 1.925455 CCGGGATCTATGCCCCCAT 60.925 63.158 0.00 0.00 42.92 4.00
2921 2985 2.529136 CCGGGATCTATGCCCCCA 60.529 66.667 0.00 0.00 42.92 4.96
2922 2986 2.125766 GAACCGGGATCTATGCCCCC 62.126 65.000 6.32 0.00 42.92 5.40
2923 2987 1.375326 GAACCGGGATCTATGCCCC 59.625 63.158 6.32 0.00 42.92 5.80
2924 2988 1.004918 CGAACCGGGATCTATGCCC 60.005 63.158 6.32 0.00 42.41 5.36
2925 2989 0.600255 CACGAACCGGGATCTATGCC 60.600 60.000 6.32 0.00 28.17 4.40
2926 2990 0.387929 TCACGAACCGGGATCTATGC 59.612 55.000 6.32 0.00 32.99 3.14
2927 2991 1.000163 CCTCACGAACCGGGATCTATG 60.000 57.143 6.32 5.44 39.06 2.23
2928 2992 1.329256 CCTCACGAACCGGGATCTAT 58.671 55.000 6.32 0.00 39.06 1.98
2929 2993 1.389609 GCCTCACGAACCGGGATCTA 61.390 60.000 6.32 0.00 39.06 1.98
2930 2994 2.722201 GCCTCACGAACCGGGATCT 61.722 63.158 6.32 0.00 39.06 2.75
2931 2995 2.202892 GCCTCACGAACCGGGATC 60.203 66.667 6.32 2.37 39.06 3.36
2932 2996 3.782443 GGCCTCACGAACCGGGAT 61.782 66.667 6.32 0.00 39.06 3.85
2934 2998 4.760047 CTGGCCTCACGAACCGGG 62.760 72.222 6.32 0.00 0.00 5.73
2935 2999 4.760047 CCTGGCCTCACGAACCGG 62.760 72.222 3.32 0.00 0.00 5.28
2936 3000 4.003788 ACCTGGCCTCACGAACCG 62.004 66.667 3.32 0.00 0.00 4.44
2937 3001 2.358737 CACCTGGCCTCACGAACC 60.359 66.667 3.32 0.00 0.00 3.62
2938 3002 2.358737 CCACCTGGCCTCACGAAC 60.359 66.667 3.32 0.00 0.00 3.95
2965 3029 2.044053 ACCAATGCCCCACGATGG 60.044 61.111 0.00 0.00 37.25 3.51
2966 3030 1.077501 AGACCAATGCCCCACGATG 60.078 57.895 0.00 0.00 0.00 3.84
2967 3031 1.224592 GAGACCAATGCCCCACGAT 59.775 57.895 0.00 0.00 0.00 3.73
2968 3032 2.668632 GAGACCAATGCCCCACGA 59.331 61.111 0.00 0.00 0.00 4.35
2969 3033 2.819595 CGAGACCAATGCCCCACG 60.820 66.667 0.00 0.00 0.00 4.94
2970 3034 2.438434 CCGAGACCAATGCCCCAC 60.438 66.667 0.00 0.00 0.00 4.61
2971 3035 2.478335 GAACCGAGACCAATGCCCCA 62.478 60.000 0.00 0.00 0.00 4.96
2972 3036 1.749258 GAACCGAGACCAATGCCCC 60.749 63.158 0.00 0.00 0.00 5.80
2973 3037 0.394352 ATGAACCGAGACCAATGCCC 60.394 55.000 0.00 0.00 0.00 5.36
2974 3038 1.017387 GATGAACCGAGACCAATGCC 58.983 55.000 0.00 0.00 0.00 4.40
2975 3039 1.667724 CAGATGAACCGAGACCAATGC 59.332 52.381 0.00 0.00 0.00 3.56
2976 3040 2.283298 CCAGATGAACCGAGACCAATG 58.717 52.381 0.00 0.00 0.00 2.82
2977 3041 1.407437 GCCAGATGAACCGAGACCAAT 60.407 52.381 0.00 0.00 0.00 3.16
2978 3042 0.036388 GCCAGATGAACCGAGACCAA 60.036 55.000 0.00 0.00 0.00 3.67
2979 3043 1.191489 TGCCAGATGAACCGAGACCA 61.191 55.000 0.00 0.00 0.00 4.02
2980 3044 0.741221 GTGCCAGATGAACCGAGACC 60.741 60.000 0.00 0.00 0.00 3.85
2981 3045 0.741221 GGTGCCAGATGAACCGAGAC 60.741 60.000 0.00 0.00 0.00 3.36
2982 3046 0.904865 AGGTGCCAGATGAACCGAGA 60.905 55.000 0.00 0.00 39.07 4.04
2983 3047 0.460987 GAGGTGCCAGATGAACCGAG 60.461 60.000 0.00 0.00 39.07 4.63
2984 3048 0.904865 AGAGGTGCCAGATGAACCGA 60.905 55.000 0.00 0.00 39.07 4.69
2985 3049 0.460987 GAGAGGTGCCAGATGAACCG 60.461 60.000 0.00 0.00 39.07 4.44
2986 3050 0.460987 CGAGAGGTGCCAGATGAACC 60.461 60.000 0.00 0.00 0.00 3.62
2987 3051 0.532573 TCGAGAGGTGCCAGATGAAC 59.467 55.000 0.00 0.00 0.00 3.18
2988 3052 1.066858 GTTCGAGAGGTGCCAGATGAA 60.067 52.381 0.00 0.00 0.00 2.57
2989 3053 0.532573 GTTCGAGAGGTGCCAGATGA 59.467 55.000 0.00 0.00 0.00 2.92
2990 3054 0.460987 GGTTCGAGAGGTGCCAGATG 60.461 60.000 0.00 0.00 0.00 2.90
2991 3055 1.901085 GGTTCGAGAGGTGCCAGAT 59.099 57.895 0.00 0.00 0.00 2.90
2992 3056 2.636412 CGGTTCGAGAGGTGCCAGA 61.636 63.158 0.00 0.00 0.00 3.86
2993 3057 2.125912 CGGTTCGAGAGGTGCCAG 60.126 66.667 0.00 0.00 0.00 4.85
2994 3058 3.691342 CCGGTTCGAGAGGTGCCA 61.691 66.667 0.00 0.00 0.00 4.92
2995 3059 4.452733 CCCGGTTCGAGAGGTGCC 62.453 72.222 0.00 0.00 0.00 5.01
2996 3060 3.379445 TCCCGGTTCGAGAGGTGC 61.379 66.667 0.00 0.00 0.00 5.01
2997 3061 2.572284 GTCCCGGTTCGAGAGGTG 59.428 66.667 0.00 0.00 0.00 4.00
2998 3062 2.679287 GGTCCCGGTTCGAGAGGT 60.679 66.667 0.00 0.00 0.00 3.85
2999 3063 1.614241 ATTGGTCCCGGTTCGAGAGG 61.614 60.000 0.00 0.00 0.00 3.69
3000 3064 0.460284 CATTGGTCCCGGTTCGAGAG 60.460 60.000 0.00 0.00 0.00 3.20
3001 3065 1.189524 ACATTGGTCCCGGTTCGAGA 61.190 55.000 0.00 0.00 0.00 4.04
3002 3066 1.019278 CACATTGGTCCCGGTTCGAG 61.019 60.000 0.00 0.00 0.00 4.04
3003 3067 1.004320 CACATTGGTCCCGGTTCGA 60.004 57.895 0.00 0.00 0.00 3.71
3004 3068 2.686816 GCACATTGGTCCCGGTTCG 61.687 63.158 0.00 0.00 0.00 3.95
3005 3069 2.340328 GGCACATTGGTCCCGGTTC 61.340 63.158 0.00 0.00 0.00 3.62
3006 3070 2.282887 GGCACATTGGTCCCGGTT 60.283 61.111 0.00 0.00 0.00 4.44
3007 3071 3.256960 AGGCACATTGGTCCCGGT 61.257 61.111 0.00 0.00 0.00 5.28
3008 3072 2.438434 GAGGCACATTGGTCCCGG 60.438 66.667 0.00 0.00 0.00 5.73
3009 3073 2.819595 CGAGGCACATTGGTCCCG 60.820 66.667 0.00 0.00 0.00 5.14
3010 3074 3.134127 GCGAGGCACATTGGTCCC 61.134 66.667 0.00 0.00 0.00 4.46
3011 3075 2.045926 AGCGAGGCACATTGGTCC 60.046 61.111 0.00 0.00 0.00 4.46
3012 3076 2.109126 GGAGCGAGGCACATTGGTC 61.109 63.158 0.00 0.00 0.00 4.02
3013 3077 2.045926 GGAGCGAGGCACATTGGT 60.046 61.111 0.00 0.00 0.00 3.67
3014 3078 2.110967 CAGGAGCGAGGCACATTGG 61.111 63.158 0.00 0.00 0.00 3.16
3015 3079 2.110967 CCAGGAGCGAGGCACATTG 61.111 63.158 0.00 0.00 0.00 2.82
3016 3080 2.270205 CCAGGAGCGAGGCACATT 59.730 61.111 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.