Multiple sequence alignment - TraesCS2B01G507500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G507500 chr2B 100.000 3493 0 0 1 3493 704128279 704131771 0.000000e+00 6451.0
1 TraesCS2B01G507500 chr2B 80.899 1424 184 55 1220 2592 704238286 704239672 0.000000e+00 1042.0
2 TraesCS2B01G507500 chr2B 78.318 761 121 33 1220 1953 704116807 704117550 5.320000e-123 451.0
3 TraesCS2B01G507500 chr2B 82.412 398 51 13 1037 1423 705683004 705683393 2.600000e-86 329.0
4 TraesCS2B01G507500 chr2B 90.323 186 18 0 1220 1405 704291596 704291781 9.680000e-61 244.0
5 TraesCS2B01G507500 chr2B 82.230 287 34 11 862 1145 704237964 704238236 7.540000e-57 231.0
6 TraesCS2B01G507500 chr2B 85.520 221 28 3 1491 1708 705683485 705683704 9.750000e-56 228.0
7 TraesCS2B01G507500 chr2D 83.695 2533 216 101 375 2821 584532642 584535063 0.000000e+00 2207.0
8 TraesCS2B01G507500 chr2D 78.078 1072 186 30 1491 2552 584530854 584531886 1.770000e-177 632.0
9 TraesCS2B01G507500 chr2D 81.418 522 64 17 891 1405 584539299 584539794 2.530000e-106 396.0
10 TraesCS2B01G507500 chr2D 82.152 409 48 16 1037 1423 585063684 585064089 9.350000e-86 327.0
11 TraesCS2B01G507500 chr2D 79.195 447 66 22 985 1424 584530281 584530707 5.710000e-73 285.0
12 TraesCS2B01G507500 chr2D 78.969 485 51 24 2827 3276 584535184 584535652 2.050000e-72 283.0
13 TraesCS2B01G507500 chr2D 77.707 471 75 22 1491 1947 584539994 584540448 9.620000e-66 261.0
14 TraesCS2B01G507500 chr2D 78.333 420 57 22 1491 1892 585064180 585064583 1.250000e-59 241.0
15 TraesCS2B01G507500 chr2D 92.701 137 10 0 2703 2839 584535736 584535872 7.650000e-47 198.0
16 TraesCS2B01G507500 chr2A 81.074 1807 236 67 839 2592 718621904 718623657 0.000000e+00 1345.0
17 TraesCS2B01G507500 chr2A 86.235 494 58 4 2703 3189 718577087 718577577 8.590000e-146 527.0
18 TraesCS2B01G507500 chr2A 89.041 365 32 5 3131 3493 718601551 718601909 2.470000e-121 446.0
19 TraesCS2B01G507500 chr2A 80.243 658 65 32 2678 3276 718576352 718577003 5.350000e-118 435.0
20 TraesCS2B01G507500 chr2A 91.235 251 19 3 2657 2905 718579504 718579753 4.320000e-89 339.0
21 TraesCS2B01G507500 chr2A 81.390 403 54 16 1036 1426 719218003 719218396 3.390000e-80 309.0
22 TraesCS2B01G507500 chr2A 77.778 477 77 23 1491 1946 718722245 718722713 2.070000e-67 267.0
23 TraesCS2B01G507500 chr2A 90.860 186 17 0 1220 1405 718721937 718722122 2.080000e-62 250.0
24 TraesCS2B01G507500 chr2A 82.215 298 30 16 886 1172 718721569 718721854 5.830000e-58 235.0
25 TraesCS2B01G507500 chr2A 90.854 164 15 0 2703 2866 718578170 718578333 1.630000e-53 220.0
26 TraesCS2B01G507500 chr2A 89.677 155 12 3 994 1147 718574643 718574794 9.890000e-46 195.0
27 TraesCS2B01G507500 chr2A 92.857 84 6 0 3314 3397 718577012 718577095 4.730000e-24 122.0
28 TraesCS2B01G507500 chr2A 88.095 84 5 5 3196 3276 718578005 718578086 1.030000e-15 95.3
29 TraesCS2B01G507500 chr7D 75.806 186 28 10 3311 3493 214106470 214106299 1.040000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G507500 chr2B 704128279 704131771 3492 False 6451.000000 6451 100.000000 1 3493 1 chr2B.!!$F2 3492
1 TraesCS2B01G507500 chr2B 704237964 704239672 1708 False 636.500000 1042 81.564500 862 2592 2 chr2B.!!$F4 1730
2 TraesCS2B01G507500 chr2B 704116807 704117550 743 False 451.000000 451 78.318000 1220 1953 1 chr2B.!!$F1 733
3 TraesCS2B01G507500 chr2B 705683004 705683704 700 False 278.500000 329 83.966000 1037 1708 2 chr2B.!!$F5 671
4 TraesCS2B01G507500 chr2D 584530281 584540448 10167 False 608.857143 2207 81.680429 375 3276 7 chr2D.!!$F1 2901
5 TraesCS2B01G507500 chr2D 585063684 585064583 899 False 284.000000 327 80.242500 1037 1892 2 chr2D.!!$F2 855
6 TraesCS2B01G507500 chr2A 718621904 718623657 1753 False 1345.000000 1345 81.074000 839 2592 1 chr2A.!!$F2 1753
7 TraesCS2B01G507500 chr2A 718574643 718579753 5110 False 276.185714 527 88.456571 994 3397 7 chr2A.!!$F4 2403
8 TraesCS2B01G507500 chr2A 718721569 718722713 1144 False 250.666667 267 83.617667 886 1946 3 chr2A.!!$F5 1060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 2981 0.251519 TGTCTCTCAGCTGCCAGAGA 60.252 55.0 24.21 24.21 42.40 3.10 F
1240 3370 0.034198 TTTGGGTTCGCAGATGACGA 59.966 50.0 0.00 0.00 35.04 4.20 F
2302 4648 0.104855 TTCTGAAGCTCGTGCACTGT 59.895 50.0 16.19 0.00 42.74 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2281 4627 0.104855 AGTGCACGAGCTTCAGAACA 59.895 50.0 12.01 0.00 42.74 3.18 R
2456 4808 0.183731 CCAAGGCCCTTCCATACTCC 59.816 60.0 0.00 0.00 37.29 3.85 R
3133 6261 0.825425 TCGGGTACAACACGTGGGTA 60.825 55.0 21.57 18.11 46.74 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.913137 AAAGTTGACAAATCTTCACCACA 57.087 34.783 0.00 0.00 0.00 4.17
27 28 4.269183 AGTTGACAAATCTTCACCACACA 58.731 39.130 0.00 0.00 0.00 3.72
28 29 4.889409 AGTTGACAAATCTTCACCACACAT 59.111 37.500 0.00 0.00 0.00 3.21
29 30 5.360714 AGTTGACAAATCTTCACCACACATT 59.639 36.000 0.00 0.00 0.00 2.71
30 31 5.437289 TGACAAATCTTCACCACACATTC 57.563 39.130 0.00 0.00 0.00 2.67
31 32 4.278170 TGACAAATCTTCACCACACATTCC 59.722 41.667 0.00 0.00 0.00 3.01
32 33 4.214310 ACAAATCTTCACCACACATTCCA 58.786 39.130 0.00 0.00 0.00 3.53
33 34 4.648762 ACAAATCTTCACCACACATTCCAA 59.351 37.500 0.00 0.00 0.00 3.53
34 35 5.128499 ACAAATCTTCACCACACATTCCAAA 59.872 36.000 0.00 0.00 0.00 3.28
36 37 5.867903 ATCTTCACCACACATTCCAAAAA 57.132 34.783 0.00 0.00 0.00 1.94
37 38 5.867903 TCTTCACCACACATTCCAAAAAT 57.132 34.783 0.00 0.00 0.00 1.82
38 39 6.968263 TCTTCACCACACATTCCAAAAATA 57.032 33.333 0.00 0.00 0.00 1.40
39 40 7.537596 TCTTCACCACACATTCCAAAAATAT 57.462 32.000 0.00 0.00 0.00 1.28
40 41 7.961351 TCTTCACCACACATTCCAAAAATATT 58.039 30.769 0.00 0.00 0.00 1.28
41 42 9.083422 TCTTCACCACACATTCCAAAAATATTA 57.917 29.630 0.00 0.00 0.00 0.98
42 43 9.874205 CTTCACCACACATTCCAAAAATATTAT 57.126 29.630 0.00 0.00 0.00 1.28
45 46 8.389603 CACCACACATTCCAAAAATATTATTGC 58.610 33.333 0.00 0.00 0.00 3.56
46 47 7.552330 ACCACACATTCCAAAAATATTATTGCC 59.448 33.333 0.00 0.00 0.00 4.52
47 48 7.551974 CCACACATTCCAAAAATATTATTGCCA 59.448 33.333 0.00 0.00 0.00 4.92
48 49 9.111613 CACACATTCCAAAAATATTATTGCCAT 57.888 29.630 0.00 0.00 0.00 4.40
49 50 9.111613 ACACATTCCAAAAATATTATTGCCATG 57.888 29.630 0.00 0.00 0.00 3.66
50 51 8.071368 CACATTCCAAAAATATTATTGCCATGC 58.929 33.333 0.00 0.00 0.00 4.06
51 52 7.994334 ACATTCCAAAAATATTATTGCCATGCT 59.006 29.630 0.00 0.00 0.00 3.79
55 56 8.922237 TCCAAAAATATTATTGCCATGCTAAGA 58.078 29.630 0.00 0.00 0.00 2.10
56 57 9.545105 CCAAAAATATTATTGCCATGCTAAGAA 57.455 29.630 0.00 0.00 0.00 2.52
64 65 4.454728 TGCCATGCTAAGAAATGTTTCC 57.545 40.909 2.04 0.00 37.92 3.13
65 66 3.119531 TGCCATGCTAAGAAATGTTTCCG 60.120 43.478 2.04 0.00 37.92 4.30
67 68 3.119531 CCATGCTAAGAAATGTTTCCGCA 60.120 43.478 13.35 13.35 38.65 5.69
68 69 4.484236 CATGCTAAGAAATGTTTCCGCAA 58.516 39.130 14.34 4.21 38.18 4.85
69 70 3.896122 TGCTAAGAAATGTTTCCGCAAC 58.104 40.909 10.34 0.00 37.92 4.17
70 71 3.568007 TGCTAAGAAATGTTTCCGCAACT 59.432 39.130 10.34 0.00 37.92 3.16
71 72 4.037446 TGCTAAGAAATGTTTCCGCAACTT 59.963 37.500 10.34 0.00 37.92 2.66
72 73 4.982295 GCTAAGAAATGTTTCCGCAACTTT 59.018 37.500 2.04 0.00 37.92 2.66
73 74 5.462068 GCTAAGAAATGTTTCCGCAACTTTT 59.538 36.000 2.04 8.44 42.55 2.27
75 76 7.168469 GCTAAGAAATGTTTCCGCAACTTTTAA 59.832 33.333 2.04 0.00 40.87 1.52
76 77 9.191995 CTAAGAAATGTTTCCGCAACTTTTAAT 57.808 29.630 2.04 5.30 40.87 1.40
78 79 9.535878 AAGAAATGTTTCCGCAACTTTTAATAA 57.464 25.926 2.04 0.00 40.87 1.40
79 80 9.535878 AGAAATGTTTCCGCAACTTTTAATAAA 57.464 25.926 2.04 0.00 40.87 1.40
82 83 7.111353 TGTTTCCGCAACTTTTAATAAATGC 57.889 32.000 1.00 1.00 36.21 3.56
84 85 6.942886 TTCCGCAACTTTTAATAAATGCTG 57.057 33.333 7.82 3.84 30.58 4.41
85 86 6.260870 TCCGCAACTTTTAATAAATGCTGA 57.739 33.333 7.82 4.71 30.58 4.26
86 87 6.862209 TCCGCAACTTTTAATAAATGCTGAT 58.138 32.000 7.82 0.00 30.58 2.90
87 88 7.990917 TCCGCAACTTTTAATAAATGCTGATA 58.009 30.769 7.82 0.00 30.58 2.15
88 89 8.128582 TCCGCAACTTTTAATAAATGCTGATAG 58.871 33.333 7.82 0.00 30.58 2.08
106 107 7.655490 GCTGATAGCATTGGAAAAATGATAGT 58.345 34.615 2.33 0.00 41.89 2.12
107 108 7.594015 GCTGATAGCATTGGAAAAATGATAGTG 59.406 37.037 2.33 0.00 41.89 2.74
108 109 8.750515 TGATAGCATTGGAAAAATGATAGTGA 57.249 30.769 2.33 0.00 32.86 3.41
110 111 6.839124 AGCATTGGAAAAATGATAGTGACA 57.161 33.333 2.33 0.00 0.00 3.58
111 112 7.230849 AGCATTGGAAAAATGATAGTGACAA 57.769 32.000 2.33 0.00 0.00 3.18
112 113 7.092716 AGCATTGGAAAAATGATAGTGACAAC 58.907 34.615 2.33 0.00 0.00 3.32
114 115 7.384660 GCATTGGAAAAATGATAGTGACAACAA 59.615 33.333 2.33 0.00 0.00 2.83
117 118 9.829507 TTGGAAAAATGATAGTGACAACAAAAT 57.170 25.926 0.00 0.00 0.00 1.82
135 136 7.461182 ACAAAATATGTTCCGGATTTCAAGA 57.539 32.000 4.15 0.00 40.06 3.02
137 138 8.364142 ACAAAATATGTTCCGGATTTCAAGAAA 58.636 29.630 4.15 0.00 40.06 2.52
138 139 9.202273 CAAAATATGTTCCGGATTTCAAGAAAA 57.798 29.630 4.15 0.00 33.56 2.29
139 140 9.942850 AAAATATGTTCCGGATTTCAAGAAAAT 57.057 25.926 4.15 0.00 40.34 1.82
140 141 8.931385 AATATGTTCCGGATTTCAAGAAAATG 57.069 30.769 4.15 0.00 37.70 2.32
141 142 5.782893 TGTTCCGGATTTCAAGAAAATGT 57.217 34.783 4.15 0.00 37.70 2.71
143 144 7.461182 TGTTCCGGATTTCAAGAAAATGTAT 57.539 32.000 4.15 0.00 37.70 2.29
144 145 7.312154 TGTTCCGGATTTCAAGAAAATGTATG 58.688 34.615 4.15 0.00 37.70 2.39
145 146 7.040062 TGTTCCGGATTTCAAGAAAATGTATGT 60.040 33.333 4.15 0.00 37.70 2.29
146 147 6.851609 TCCGGATTTCAAGAAAATGTATGTG 58.148 36.000 0.00 0.00 37.70 3.21
147 148 6.657117 TCCGGATTTCAAGAAAATGTATGTGA 59.343 34.615 0.00 0.00 37.70 3.58
148 149 7.339212 TCCGGATTTCAAGAAAATGTATGTGAT 59.661 33.333 0.00 0.00 37.70 3.06
149 150 7.975616 CCGGATTTCAAGAAAATGTATGTGATT 59.024 33.333 0.00 0.00 37.70 2.57
150 151 9.357652 CGGATTTCAAGAAAATGTATGTGATTT 57.642 29.630 0.00 0.00 37.70 2.17
233 234 9.512588 TTCCCAATTAAATAAAAATGTGCATGT 57.487 25.926 0.00 0.00 0.00 3.21
314 315 8.750626 TGTTTACGTAGTACAATTGTTTTTCG 57.249 30.769 17.78 17.62 45.76 3.46
315 316 8.386606 TGTTTACGTAGTACAATTGTTTTTCGT 58.613 29.630 17.78 21.61 45.76 3.85
317 318 9.842444 TTTACGTAGTACAATTGTTTTTCGTAC 57.158 29.630 24.02 14.20 45.76 3.67
318 319 6.876804 ACGTAGTACAATTGTTTTTCGTACC 58.123 36.000 17.78 0.00 41.94 3.34
319 320 6.478344 ACGTAGTACAATTGTTTTTCGTACCA 59.522 34.615 17.78 0.00 41.94 3.25
320 321 7.171337 ACGTAGTACAATTGTTTTTCGTACCAT 59.829 33.333 17.78 0.00 41.94 3.55
321 322 8.011106 CGTAGTACAATTGTTTTTCGTACCATT 58.989 33.333 17.78 0.00 34.34 3.16
324 325 8.407064 AGTACAATTGTTTTTCGTACCATTCAA 58.593 29.630 17.78 0.00 34.34 2.69
325 326 9.021863 GTACAATTGTTTTTCGTACCATTCAAA 57.978 29.630 17.78 0.00 0.00 2.69
326 327 8.480643 ACAATTGTTTTTCGTACCATTCAAAA 57.519 26.923 4.92 0.00 0.00 2.44
327 328 8.936864 ACAATTGTTTTTCGTACCATTCAAAAA 58.063 25.926 4.92 0.00 0.00 1.94
333 334 4.879104 TCGTACCATTCAAAAACAACGT 57.121 36.364 0.00 0.00 0.00 3.99
334 335 4.589252 TCGTACCATTCAAAAACAACGTG 58.411 39.130 0.00 0.00 0.00 4.49
335 336 4.331992 TCGTACCATTCAAAAACAACGTGA 59.668 37.500 0.00 0.00 0.00 4.35
336 337 5.007823 TCGTACCATTCAAAAACAACGTGAT 59.992 36.000 0.00 0.00 0.00 3.06
337 338 5.114871 CGTACCATTCAAAAACAACGTGATG 59.885 40.000 0.00 0.00 0.00 3.07
338 339 5.004922 ACCATTCAAAAACAACGTGATGT 57.995 34.783 0.00 0.00 34.24 3.06
340 341 6.565234 ACCATTCAAAAACAACGTGATGTTA 58.435 32.000 6.07 0.00 42.49 2.41
341 342 7.036220 ACCATTCAAAAACAACGTGATGTTAA 58.964 30.769 6.07 0.00 42.49 2.01
342 343 7.545965 ACCATTCAAAAACAACGTGATGTTAAA 59.454 29.630 6.07 0.88 42.49 1.52
343 344 8.383619 CCATTCAAAAACAACGTGATGTTAAAA 58.616 29.630 6.07 0.58 42.49 1.52
344 345 9.746711 CATTCAAAAACAACGTGATGTTAAAAA 57.253 25.926 6.07 0.87 42.49 1.94
420 2409 8.138712 GGATGTAAAAACAGTTCATGTGGTTTA 58.861 33.333 0.00 0.00 43.00 2.01
422 2411 8.690680 TGTAAAAACAGTTCATGTGGTTTAAC 57.309 30.769 0.00 5.88 43.00 2.01
432 2421 8.878769 AGTTCATGTGGTTTAACAAAAATGTTC 58.121 29.630 0.00 0.00 32.81 3.18
439 2428 5.529060 GGTTTAACAAAAATGTTCCATGCCA 59.471 36.000 0.00 0.00 33.59 4.92
443 2432 8.908786 TTAACAAAAATGTTCCATGCCAATTA 57.091 26.923 0.00 0.00 33.59 1.40
445 2434 7.814264 ACAAAAATGTTCCATGCCAATTAAA 57.186 28.000 0.00 0.00 0.00 1.52
446 2435 8.230472 ACAAAAATGTTCCATGCCAATTAAAA 57.770 26.923 0.00 0.00 0.00 1.52
447 2436 8.689972 ACAAAAATGTTCCATGCCAATTAAAAA 58.310 25.926 0.00 0.00 0.00 1.94
511 2503 8.934507 TCGAAAAAGTCCAAAACATGTATTTT 57.065 26.923 0.00 0.00 31.87 1.82
566 2579 7.304919 TCAACGCGTATATAAAAATGGACAA 57.695 32.000 14.46 0.00 0.00 3.18
582 2595 8.735692 AAATGGACAATGTGTTTTGAGAAAAT 57.264 26.923 0.00 0.00 32.22 1.82
649 2676 3.243535 TGAGAAGGATCGATCATTGACCG 60.244 47.826 28.20 0.00 30.07 4.79
650 2677 2.959030 AGAAGGATCGATCATTGACCGA 59.041 45.455 28.20 5.41 36.72 4.69
651 2678 3.005261 AGAAGGATCGATCATTGACCGAG 59.995 47.826 28.20 0.00 35.70 4.63
652 2679 2.587522 AGGATCGATCATTGACCGAGA 58.412 47.619 25.93 0.00 35.70 4.04
653 2680 2.294791 AGGATCGATCATTGACCGAGAC 59.705 50.000 25.93 4.33 35.70 3.36
654 2681 2.311462 GATCGATCATTGACCGAGACG 58.689 52.381 20.52 0.21 35.70 4.18
655 2682 1.092348 TCGATCATTGACCGAGACGT 58.908 50.000 0.00 0.00 0.00 4.34
656 2683 1.471287 TCGATCATTGACCGAGACGTT 59.529 47.619 0.00 0.00 0.00 3.99
657 2684 1.846782 CGATCATTGACCGAGACGTTC 59.153 52.381 0.00 0.00 0.00 3.95
658 2685 2.478031 CGATCATTGACCGAGACGTTCT 60.478 50.000 0.00 0.00 0.00 3.01
659 2686 2.347697 TCATTGACCGAGACGTTCTG 57.652 50.000 0.00 0.00 0.00 3.02
660 2687 0.716108 CATTGACCGAGACGTTCTGC 59.284 55.000 0.00 0.00 0.00 4.26
661 2688 0.389948 ATTGACCGAGACGTTCTGCC 60.390 55.000 0.00 0.00 0.00 4.85
662 2689 2.126031 GACCGAGACGTTCTGCCC 60.126 66.667 0.00 0.00 0.00 5.36
663 2690 3.644399 GACCGAGACGTTCTGCCCC 62.644 68.421 0.00 0.00 0.00 5.80
664 2691 3.691342 CCGAGACGTTCTGCCCCA 61.691 66.667 0.00 0.00 0.00 4.96
665 2692 2.342279 CGAGACGTTCTGCCCCAA 59.658 61.111 0.00 0.00 0.00 4.12
666 2693 2.027625 CGAGACGTTCTGCCCCAAC 61.028 63.158 0.00 0.00 0.00 3.77
683 2710 2.154462 CAACGCCAACAGAGAAGGAAT 58.846 47.619 0.00 0.00 0.00 3.01
688 2715 2.815589 GCCAACAGAGAAGGAATGTGGT 60.816 50.000 0.00 0.00 0.00 4.16
689 2716 3.490348 CCAACAGAGAAGGAATGTGGTT 58.510 45.455 0.00 0.00 0.00 3.67
690 2717 3.503748 CCAACAGAGAAGGAATGTGGTTC 59.496 47.826 0.00 0.00 36.04 3.62
725 2752 1.847328 TCCGTTAGCTCTGGTCATCA 58.153 50.000 0.00 0.00 0.00 3.07
768 2795 2.354656 GATCGGCAGCGCGTCATA 60.355 61.111 8.43 0.00 0.00 2.15
769 2796 1.734477 GATCGGCAGCGCGTCATAT 60.734 57.895 8.43 0.00 0.00 1.78
770 2797 0.456142 GATCGGCAGCGCGTCATATA 60.456 55.000 8.43 0.00 0.00 0.86
778 2806 2.472861 CAGCGCGTCATATAGACTTTGG 59.527 50.000 8.43 0.00 45.32 3.28
781 2809 3.550233 GCGCGTCATATAGACTTTGGAGA 60.550 47.826 8.43 0.00 45.32 3.71
795 2823 2.961526 TGGAGATAAGAGACAACCGC 57.038 50.000 0.00 0.00 0.00 5.68
813 2841 1.065109 CATGGTCGTCGTCGGCATA 59.935 57.895 9.16 0.00 44.04 3.14
814 2842 0.318699 CATGGTCGTCGTCGGCATAT 60.319 55.000 9.16 0.00 44.04 1.78
817 2845 1.283736 GGTCGTCGTCGGCATATTTT 58.716 50.000 9.16 0.00 44.04 1.82
859 2887 3.740397 CGACCTACGTGGCGACCA 61.740 66.667 0.00 0.00 40.22 4.02
860 2888 2.181021 GACCTACGTGGCGACCAG 59.819 66.667 0.00 0.00 40.22 4.00
924 2953 1.268352 GAGCACACTCGAGTTGTCTCT 59.732 52.381 17.26 14.93 38.45 3.10
928 2972 1.268352 ACACTCGAGTTGTCTCTCAGC 59.732 52.381 17.26 0.00 38.45 4.26
929 2973 1.539388 CACTCGAGTTGTCTCTCAGCT 59.461 52.381 17.26 0.00 40.21 4.24
930 2974 1.539388 ACTCGAGTTGTCTCTCAGCTG 59.461 52.381 13.58 7.63 37.72 4.24
935 2979 0.319728 GTTGTCTCTCAGCTGCCAGA 59.680 55.000 9.47 9.60 0.00 3.86
936 2980 0.607112 TTGTCTCTCAGCTGCCAGAG 59.393 55.000 21.10 21.10 38.01 3.35
937 2981 0.251519 TGTCTCTCAGCTGCCAGAGA 60.252 55.000 24.21 24.21 42.40 3.10
938 2982 0.894141 GTCTCTCAGCTGCCAGAGAA 59.106 55.000 27.73 14.81 45.36 2.87
939 2983 1.274728 GTCTCTCAGCTGCCAGAGAAA 59.725 52.381 27.73 11.61 45.36 2.52
940 2984 1.274728 TCTCTCAGCTGCCAGAGAAAC 59.725 52.381 25.26 0.00 41.82 2.78
941 2985 1.001746 CTCTCAGCTGCCAGAGAAACA 59.998 52.381 22.15 0.00 40.13 2.83
942 2986 1.155042 CTCAGCTGCCAGAGAAACAC 58.845 55.000 9.47 0.00 33.74 3.32
981 3036 1.318886 TGCCAGGAGAAGAGAGCTCG 61.319 60.000 8.37 0.00 33.19 5.03
1103 3163 1.654317 GTCAAGATGCTGCTGGAGAG 58.346 55.000 0.00 0.00 0.00 3.20
1187 3250 0.389426 CGGTTGAGGGGTTCTGTACG 60.389 60.000 0.00 0.00 0.00 3.67
1199 3262 3.119919 GGTTCTGTACGTGGTACTCTGAG 60.120 52.174 2.45 2.45 39.49 3.35
1240 3370 0.034198 TTTGGGTTCGCAGATGACGA 59.966 50.000 0.00 0.00 35.04 4.20
1259 3389 0.752009 AGGAGAAGACCGCGCATCTA 60.752 55.000 8.75 0.00 34.73 1.98
1328 3458 0.107945 GTGAAGAGGGCAGCTTCGAT 60.108 55.000 12.08 0.00 43.57 3.59
1406 3540 1.689273 CCAGAGAATCCCGAGGTAAGG 59.311 57.143 0.00 0.00 33.66 2.69
1469 3685 4.517285 TGATCCCTGAAACTATCAACTGC 58.483 43.478 0.00 0.00 37.67 4.40
1555 3828 3.973267 GAGGTCGTGCGTGAGAGCC 62.973 68.421 2.71 0.00 35.67 4.70
1718 3991 6.590292 GGTACACACACATATATATGCACTCC 59.410 42.308 20.46 9.88 37.19 3.85
1740 4030 4.201950 CCCGATCTGTTGAATCATTTCACC 60.202 45.833 0.00 0.00 41.50 4.02
1761 4070 2.621338 GAGAGATGAAACGGTGATGCA 58.379 47.619 0.00 0.00 0.00 3.96
1762 4071 3.201290 GAGAGATGAAACGGTGATGCAT 58.799 45.455 0.00 0.00 0.00 3.96
1765 4074 1.132834 GATGAAACGGTGATGCATGCA 59.867 47.619 25.04 25.04 0.00 3.96
1817 4126 1.301716 GTGCTTGTGGAGAAGGCGA 60.302 57.895 0.00 0.00 0.00 5.54
1910 4222 2.432628 CGAACGACCTCACCAGCC 60.433 66.667 0.00 0.00 0.00 4.85
1913 4225 1.816863 GAACGACCTCACCAGCCTCA 61.817 60.000 0.00 0.00 0.00 3.86
1917 4229 1.908340 GACCTCACCAGCCTCAGCAT 61.908 60.000 0.00 0.00 43.56 3.79
1951 4263 1.760613 CTATCCGGTGAGGCCTGTAAA 59.239 52.381 12.00 0.00 40.77 2.01
1952 4264 0.252197 ATCCGGTGAGGCCTGTAAAC 59.748 55.000 12.00 2.48 40.77 2.01
1954 4266 0.673644 CCGGTGAGGCCTGTAAACAG 60.674 60.000 12.00 3.70 43.40 3.16
1956 4268 1.274167 CGGTGAGGCCTGTAAACAGTA 59.726 52.381 12.00 0.00 42.27 2.74
1974 4286 4.280929 ACAGTAAAGAATCAAAACCCAGCC 59.719 41.667 0.00 0.00 0.00 4.85
1975 4287 3.506067 AGTAAAGAATCAAAACCCAGCCG 59.494 43.478 0.00 0.00 0.00 5.52
2002 4345 6.795053 CATGTGAGTTTTATTTACATGGCG 57.205 37.500 0.00 0.00 42.84 5.69
2003 4346 5.950758 TGTGAGTTTTATTTACATGGCGT 57.049 34.783 0.00 0.00 0.00 5.68
2004 4347 5.694816 TGTGAGTTTTATTTACATGGCGTG 58.305 37.500 4.87 4.87 0.00 5.34
2005 4348 4.557301 GTGAGTTTTATTTACATGGCGTGC 59.443 41.667 6.62 0.00 0.00 5.34
2006 4349 3.753842 AGTTTTATTTACATGGCGTGCG 58.246 40.909 6.62 0.00 0.00 5.34
2007 4350 3.189702 AGTTTTATTTACATGGCGTGCGT 59.810 39.130 6.62 0.00 0.00 5.24
2008 4351 3.392769 TTTATTTACATGGCGTGCGTC 57.607 42.857 6.62 0.00 0.00 5.19
2009 4352 1.292061 TATTTACATGGCGTGCGTCC 58.708 50.000 6.62 0.00 0.00 4.79
2010 4353 1.373590 ATTTACATGGCGTGCGTCCC 61.374 55.000 6.62 0.00 0.00 4.46
2011 4354 2.733319 TTTACATGGCGTGCGTCCCA 62.733 55.000 6.62 0.00 35.21 4.37
2012 4355 2.529454 TTACATGGCGTGCGTCCCAT 62.529 55.000 6.62 0.00 42.41 4.00
2039 4382 2.902705 TGTTAGGGGATGATGCGTAC 57.097 50.000 0.00 0.00 0.00 3.67
2103 4446 1.351430 AATGGTGCACATCGACGACG 61.351 55.000 20.43 0.00 39.40 5.12
2121 4464 1.008309 GTCTGCCGAGCGGAGATAC 60.008 63.158 13.94 1.02 45.13 2.24
2168 4511 1.065928 GAGGTACATCGTCTGCGGG 59.934 63.158 0.00 0.00 38.89 6.13
2205 4548 3.333898 GAGCTTGCCCGCTTCTTGC 62.334 63.158 0.00 0.00 41.08 4.01
2238 4581 2.671396 CCGCAGTACAAGGTCAATACAC 59.329 50.000 0.00 0.00 0.00 2.90
2265 4608 0.716108 CGCACGAATGTCTTGACTCC 59.284 55.000 2.35 0.00 0.00 3.85
2281 4627 4.415150 CCACTCTGGCCATGGCGT 62.415 66.667 29.90 19.19 43.06 5.68
2302 4648 0.104855 TTCTGAAGCTCGTGCACTGT 59.895 50.000 16.19 0.00 42.74 3.55
2384 4736 0.322975 AGCCGAGAGTGTGCATTTCT 59.677 50.000 0.00 0.00 0.00 2.52
2514 4872 8.688151 ACTAAGTAGTGTGATGGATCTTAGAAC 58.312 37.037 13.49 0.00 37.42 3.01
2518 4876 4.163078 AGTGTGATGGATCTTAGAACCAGG 59.837 45.833 16.10 0.00 37.88 4.45
2524 4882 2.365617 GGATCTTAGAACCAGGCGATGA 59.634 50.000 3.53 0.00 0.00 2.92
2558 4919 6.644347 CAAAATAAGCCTAGTCTCCTGAAGA 58.356 40.000 0.00 0.00 0.00 2.87
2585 4946 4.439305 AATGATGAAATGTGGGTGTTCG 57.561 40.909 0.00 0.00 0.00 3.95
2592 4953 4.022762 TGAAATGTGGGTGTTCGGTTTATG 60.023 41.667 0.00 0.00 0.00 1.90
2602 4964 5.401079 GGTGTTCGGTTTATGTGAAAATGTG 59.599 40.000 0.00 0.00 0.00 3.21
2646 5016 0.676466 GTGATGGTTCCATGTCGGCA 60.676 55.000 9.21 0.00 33.14 5.69
2671 5041 3.511540 TCCTCACATCATGAACGTTCTCT 59.488 43.478 27.32 13.20 36.69 3.10
2704 5074 1.202382 TGTCTGATGAGAGCATGCTCG 60.202 52.381 35.50 22.98 46.90 5.03
2764 5135 1.675552 ACCGCCATTAAAATCTCCCG 58.324 50.000 0.00 0.00 0.00 5.14
2807 5178 6.325028 TCTTGTTTTCCTCTCTTTCTCTCTCA 59.675 38.462 0.00 0.00 0.00 3.27
2808 5179 6.678568 TGTTTTCCTCTCTTTCTCTCTCAT 57.321 37.500 0.00 0.00 0.00 2.90
2809 5180 6.462500 TGTTTTCCTCTCTTTCTCTCTCATG 58.538 40.000 0.00 0.00 0.00 3.07
2810 5181 6.268617 TGTTTTCCTCTCTTTCTCTCTCATGA 59.731 38.462 0.00 0.00 0.00 3.07
2811 5182 6.924913 TTTCCTCTCTTTCTCTCTCATGAA 57.075 37.500 0.00 0.00 0.00 2.57
2869 5964 2.270352 TCAATCTCGTGGCCAAAAGT 57.730 45.000 7.24 0.00 0.00 2.66
2889 5984 7.716799 AAAGTTTAGCATATGATTTGACCCA 57.283 32.000 6.97 0.00 0.00 4.51
2977 6097 1.219664 CTAATGCCGGGGTCAACGA 59.780 57.895 2.18 0.00 0.00 3.85
3005 6131 1.298993 CCAGTCTGCTGACCATGCT 59.701 57.895 18.96 0.00 45.28 3.79
3007 6133 0.036671 CAGTCTGCTGACCATGCTGA 60.037 55.000 18.96 0.00 45.28 4.26
3023 6149 1.904144 CTGACATGGCAAATCGCAAG 58.096 50.000 1.11 0.00 45.17 4.01
3031 6158 0.740737 GCAAATCGCAAGGTGGCTAT 59.259 50.000 0.00 0.00 41.79 2.97
3043 6170 1.264288 GGTGGCTATCGCTAAATGTGC 59.736 52.381 0.00 0.00 36.09 4.57
3044 6171 2.213499 GTGGCTATCGCTAAATGTGCT 58.787 47.619 0.00 0.00 36.09 4.40
3049 6176 2.401583 ATCGCTAAATGTGCTGGTGA 57.598 45.000 0.00 0.00 0.00 4.02
3068 6195 4.284178 GTGATAGACCAGTTACCCTACCA 58.716 47.826 0.00 0.00 0.00 3.25
3143 6271 3.463345 GGTCACCTACCCACGTGT 58.537 61.111 15.65 0.00 43.16 4.49
3146 6274 0.105408 GTCACCTACCCACGTGTTGT 59.895 55.000 15.65 13.53 0.00 3.32
3151 6279 0.388907 CTACCCACGTGTTGTACCCG 60.389 60.000 15.65 1.00 0.00 5.28
3156 6284 0.031043 CACGTGTTGTACCCGAGTCA 59.969 55.000 7.58 0.00 0.00 3.41
3170 6298 3.430374 CCCGAGTCAAATAGGACGAACAT 60.430 47.826 0.00 0.00 42.62 2.71
3184 6312 2.035632 CGAACATAGGAGGCTCCTCTT 58.964 52.381 38.26 26.06 45.66 2.85
3189 6317 2.950990 TAGGAGGCTCCTCTTTCCTT 57.049 50.000 38.26 15.82 45.66 3.36
3192 6320 2.719157 AGGAGGCTCCTCTTTCCTTTTT 59.281 45.455 30.46 3.78 45.66 1.94
3213 6763 1.152271 TCTAATCCCCTCAGATCCCCC 59.848 57.143 0.00 0.00 0.00 5.40
3214 6764 1.153132 CTAATCCCCTCAGATCCCCCT 59.847 57.143 0.00 0.00 0.00 4.79
3215 6765 0.104197 AATCCCCTCAGATCCCCCTC 60.104 60.000 0.00 0.00 0.00 4.30
3223 6773 3.309410 CCTCAGATCCCCCTCAACAATTT 60.309 47.826 0.00 0.00 0.00 1.82
3229 6779 6.040166 CAGATCCCCCTCAACAATTTATCTTG 59.960 42.308 0.00 0.00 0.00 3.02
3239 6789 9.132521 CTCAACAATTTATCTTGTTTGTGGATC 57.867 33.333 0.00 0.00 44.76 3.36
3243 6794 7.599998 ACAATTTATCTTGTTTGTGGATCTTGC 59.400 33.333 0.00 0.00 35.90 4.01
3272 6823 7.127339 TCCCATGCCTAAGTAAAGTAAATCTCT 59.873 37.037 0.00 0.00 0.00 3.10
3276 6827 8.147244 TGCCTAAGTAAAGTAAATCTCTTCCT 57.853 34.615 0.00 0.00 0.00 3.36
3277 6828 8.603304 TGCCTAAGTAAAGTAAATCTCTTCCTT 58.397 33.333 0.00 0.00 0.00 3.36
3278 6829 9.100554 GCCTAAGTAAAGTAAATCTCTTCCTTC 57.899 37.037 0.00 0.00 0.00 3.46
3279 6830 9.602568 CCTAAGTAAAGTAAATCTCTTCCTTCC 57.397 37.037 0.00 0.00 0.00 3.46
3280 6831 9.602568 CTAAGTAAAGTAAATCTCTTCCTTCCC 57.397 37.037 0.00 0.00 0.00 3.97
3282 6833 7.625469 AGTAAAGTAAATCTCTTCCTTCCCTG 58.375 38.462 0.00 0.00 0.00 4.45
3283 6834 4.495690 AGTAAATCTCTTCCTTCCCTGC 57.504 45.455 0.00 0.00 0.00 4.85
3284 6835 3.846588 AGTAAATCTCTTCCTTCCCTGCA 59.153 43.478 0.00 0.00 0.00 4.41
3285 6836 3.814504 AAATCTCTTCCTTCCCTGCAA 57.185 42.857 0.00 0.00 0.00 4.08
3286 6837 3.814504 AATCTCTTCCTTCCCTGCAAA 57.185 42.857 0.00 0.00 0.00 3.68
3287 6838 3.814504 ATCTCTTCCTTCCCTGCAAAA 57.185 42.857 0.00 0.00 0.00 2.44
3288 6839 3.593442 TCTCTTCCTTCCCTGCAAAAA 57.407 42.857 0.00 0.00 0.00 1.94
3289 6840 3.222603 TCTCTTCCTTCCCTGCAAAAAC 58.777 45.455 0.00 0.00 0.00 2.43
3290 6841 2.958355 CTCTTCCTTCCCTGCAAAAACA 59.042 45.455 0.00 0.00 0.00 2.83
3291 6842 3.370104 TCTTCCTTCCCTGCAAAAACAA 58.630 40.909 0.00 0.00 0.00 2.83
3292 6843 3.772025 TCTTCCTTCCCTGCAAAAACAAA 59.228 39.130 0.00 0.00 0.00 2.83
3293 6844 4.223923 TCTTCCTTCCCTGCAAAAACAAAA 59.776 37.500 0.00 0.00 0.00 2.44
3294 6845 4.559862 TCCTTCCCTGCAAAAACAAAAA 57.440 36.364 0.00 0.00 0.00 1.94
3295 6846 5.109500 TCCTTCCCTGCAAAAACAAAAAT 57.891 34.783 0.00 0.00 0.00 1.82
3296 6847 6.240549 TCCTTCCCTGCAAAAACAAAAATA 57.759 33.333 0.00 0.00 0.00 1.40
3297 6848 6.653989 TCCTTCCCTGCAAAAACAAAAATAA 58.346 32.000 0.00 0.00 0.00 1.40
3298 6849 7.112779 TCCTTCCCTGCAAAAACAAAAATAAA 58.887 30.769 0.00 0.00 0.00 1.40
3299 6850 7.777440 TCCTTCCCTGCAAAAACAAAAATAAAT 59.223 29.630 0.00 0.00 0.00 1.40
3300 6851 8.075574 CCTTCCCTGCAAAAACAAAAATAAATC 58.924 33.333 0.00 0.00 0.00 2.17
3301 6852 8.744568 TTCCCTGCAAAAACAAAAATAAATCT 57.255 26.923 0.00 0.00 0.00 2.40
3302 6853 8.376889 TCCCTGCAAAAACAAAAATAAATCTC 57.623 30.769 0.00 0.00 0.00 2.75
3303 6854 7.443879 TCCCTGCAAAAACAAAAATAAATCTCC 59.556 33.333 0.00 0.00 0.00 3.71
3304 6855 7.445096 CCCTGCAAAAACAAAAATAAATCTCCT 59.555 33.333 0.00 0.00 0.00 3.69
3305 6856 8.498358 CCTGCAAAAACAAAAATAAATCTCCTC 58.502 33.333 0.00 0.00 0.00 3.71
3306 6857 9.264719 CTGCAAAAACAAAAATAAATCTCCTCT 57.735 29.630 0.00 0.00 0.00 3.69
3307 6858 9.612066 TGCAAAAACAAAAATAAATCTCCTCTT 57.388 25.926 0.00 0.00 0.00 2.85
3374 6925 7.148069 GCAATAGGTGATACCCTAATTATTGGC 60.148 40.741 13.91 7.02 40.42 4.52
3375 6926 5.922960 AGGTGATACCCTAATTATTGGCA 57.077 39.130 0.00 0.00 39.75 4.92
3432 6983 7.820044 TTGTTTGTTAGTTTGTTTTAGCTGG 57.180 32.000 0.00 0.00 0.00 4.85
3453 10307 8.752187 AGCTGGAAATTATAAATGTTGTGTGAT 58.248 29.630 0.00 0.00 0.00 3.06
3475 10329 8.812513 TGATATGTCACTTGGATTTGAGAAAT 57.187 30.769 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.269183 TGTGTGGTGAAGATTTGTCAACT 58.731 39.130 0.00 0.00 33.64 3.16
6 7 4.630894 TGTGTGGTGAAGATTTGTCAAC 57.369 40.909 0.00 0.00 33.06 3.18
8 9 4.278170 GGAATGTGTGGTGAAGATTTGTCA 59.722 41.667 0.00 0.00 0.00 3.58
9 10 4.278170 TGGAATGTGTGGTGAAGATTTGTC 59.722 41.667 0.00 0.00 0.00 3.18
10 11 4.214310 TGGAATGTGTGGTGAAGATTTGT 58.786 39.130 0.00 0.00 0.00 2.83
11 12 4.852134 TGGAATGTGTGGTGAAGATTTG 57.148 40.909 0.00 0.00 0.00 2.32
12 13 5.867903 TTTGGAATGTGTGGTGAAGATTT 57.132 34.783 0.00 0.00 0.00 2.17
13 14 5.867903 TTTTGGAATGTGTGGTGAAGATT 57.132 34.783 0.00 0.00 0.00 2.40
15 16 5.867903 ATTTTTGGAATGTGTGGTGAAGA 57.132 34.783 0.00 0.00 0.00 2.87
18 19 9.650539 CAATAATATTTTTGGAATGTGTGGTGA 57.349 29.630 9.94 0.00 0.00 4.02
19 20 8.389603 GCAATAATATTTTTGGAATGTGTGGTG 58.610 33.333 17.04 0.00 0.00 4.17
20 21 7.552330 GGCAATAATATTTTTGGAATGTGTGGT 59.448 33.333 17.04 0.00 0.00 4.16
21 22 7.551974 TGGCAATAATATTTTTGGAATGTGTGG 59.448 33.333 17.04 0.00 0.00 4.17
22 23 8.489990 TGGCAATAATATTTTTGGAATGTGTG 57.510 30.769 17.04 0.00 0.00 3.82
23 24 9.111613 CATGGCAATAATATTTTTGGAATGTGT 57.888 29.630 17.04 0.00 0.00 3.72
24 25 8.071368 GCATGGCAATAATATTTTTGGAATGTG 58.929 33.333 17.04 0.00 0.00 3.21
25 26 7.994334 AGCATGGCAATAATATTTTTGGAATGT 59.006 29.630 17.04 0.00 0.00 2.71
28 29 9.545105 CTTAGCATGGCAATAATATTTTTGGAA 57.455 29.630 17.04 0.00 0.00 3.53
29 30 8.922237 TCTTAGCATGGCAATAATATTTTTGGA 58.078 29.630 17.04 3.67 0.00 3.53
30 31 9.545105 TTCTTAGCATGGCAATAATATTTTTGG 57.455 29.630 17.04 5.06 0.00 3.28
37 38 9.748708 GAAACATTTCTTAGCATGGCAATAATA 57.251 29.630 0.00 0.00 34.41 0.98
38 39 7.712205 GGAAACATTTCTTAGCATGGCAATAAT 59.288 33.333 4.45 0.00 37.35 1.28
39 40 7.041107 GGAAACATTTCTTAGCATGGCAATAA 58.959 34.615 4.45 0.00 37.35 1.40
40 41 6.572519 GGAAACATTTCTTAGCATGGCAATA 58.427 36.000 4.45 0.00 37.35 1.90
41 42 5.422145 GGAAACATTTCTTAGCATGGCAAT 58.578 37.500 4.45 0.00 37.35 3.56
42 43 4.617995 CGGAAACATTTCTTAGCATGGCAA 60.618 41.667 4.45 0.00 37.35 4.52
43 44 3.119531 CGGAAACATTTCTTAGCATGGCA 60.120 43.478 4.45 0.00 37.35 4.92
45 46 3.119531 TGCGGAAACATTTCTTAGCATGG 60.120 43.478 14.08 0.00 37.24 3.66
46 47 4.095410 TGCGGAAACATTTCTTAGCATG 57.905 40.909 14.08 0.00 37.24 4.06
47 48 4.218417 AGTTGCGGAAACATTTCTTAGCAT 59.782 37.500 16.81 6.80 41.61 3.79
48 49 3.568007 AGTTGCGGAAACATTTCTTAGCA 59.432 39.130 14.08 14.08 41.61 3.49
49 50 4.160736 AGTTGCGGAAACATTTCTTAGC 57.839 40.909 0.91 8.18 41.61 3.09
50 51 8.568732 TTAAAAGTTGCGGAAACATTTCTTAG 57.431 30.769 5.40 0.00 38.59 2.18
53 54 9.535878 TTTATTAAAAGTTGCGGAAACATTTCT 57.464 25.926 5.40 0.00 38.59 2.52
56 57 8.227119 GCATTTATTAAAAGTTGCGGAAACATT 58.773 29.630 0.91 0.00 41.61 2.71
57 58 7.602265 AGCATTTATTAAAAGTTGCGGAAACAT 59.398 29.630 0.91 0.00 41.61 2.71
60 61 7.148641 TCAGCATTTATTAAAAGTTGCGGAAA 58.851 30.769 11.24 0.00 36.27 3.13
61 62 6.682746 TCAGCATTTATTAAAAGTTGCGGAA 58.317 32.000 11.24 0.00 36.27 4.30
64 65 7.767860 GCTATCAGCATTTATTAAAAGTTGCG 58.232 34.615 7.30 4.36 41.89 4.85
81 82 7.594015 CACTATCATTTTTCCAATGCTATCAGC 59.406 37.037 0.00 0.00 42.82 4.26
82 83 8.843262 TCACTATCATTTTTCCAATGCTATCAG 58.157 33.333 0.00 0.00 0.00 2.90
84 85 8.623903 TGTCACTATCATTTTTCCAATGCTATC 58.376 33.333 0.00 0.00 0.00 2.08
85 86 8.523915 TGTCACTATCATTTTTCCAATGCTAT 57.476 30.769 0.00 0.00 0.00 2.97
86 87 7.936496 TGTCACTATCATTTTTCCAATGCTA 57.064 32.000 0.00 0.00 0.00 3.49
87 88 6.839124 TGTCACTATCATTTTTCCAATGCT 57.161 33.333 0.00 0.00 0.00 3.79
88 89 6.867816 TGTTGTCACTATCATTTTTCCAATGC 59.132 34.615 0.00 0.00 0.00 3.56
90 91 9.829507 TTTTGTTGTCACTATCATTTTTCCAAT 57.170 25.926 0.00 0.00 0.00 3.16
91 92 9.829507 ATTTTGTTGTCACTATCATTTTTCCAA 57.170 25.926 0.00 0.00 0.00 3.53
111 112 7.461182 TCTTGAAATCCGGAACATATTTTGT 57.539 32.000 9.01 0.00 41.53 2.83
112 113 8.755696 TTTCTTGAAATCCGGAACATATTTTG 57.244 30.769 9.01 0.00 0.00 2.44
114 115 9.369904 CATTTTCTTGAAATCCGGAACATATTT 57.630 29.630 9.01 3.43 35.79 1.40
117 118 7.461182 ACATTTTCTTGAAATCCGGAACATA 57.539 32.000 9.01 0.00 35.79 2.29
118 119 6.345096 ACATTTTCTTGAAATCCGGAACAT 57.655 33.333 9.01 0.00 35.79 2.71
119 120 5.782893 ACATTTTCTTGAAATCCGGAACA 57.217 34.783 9.01 6.76 35.79 3.18
120 121 7.273381 CACATACATTTTCTTGAAATCCGGAAC 59.727 37.037 9.01 3.74 35.79 3.62
122 123 6.657117 TCACATACATTTTCTTGAAATCCGGA 59.343 34.615 6.61 6.61 35.79 5.14
124 125 8.915871 AATCACATACATTTTCTTGAAATCCG 57.084 30.769 0.00 0.00 35.79 4.18
288 289 9.372541 CGAAAAACAATTGTACTACGTAAACAT 57.627 29.630 12.39 0.00 0.00 2.71
289 290 8.386606 ACGAAAAACAATTGTACTACGTAAACA 58.613 29.630 22.34 6.37 0.00 2.83
291 292 9.842444 GTACGAAAAACAATTGTACTACGTAAA 57.158 29.630 26.26 15.13 34.15 2.01
292 293 8.484008 GGTACGAAAAACAATTGTACTACGTAA 58.516 33.333 26.26 16.18 36.52 3.18
293 294 7.649705 TGGTACGAAAAACAATTGTACTACGTA 59.350 33.333 23.51 23.51 36.52 3.57
294 295 6.478344 TGGTACGAAAAACAATTGTACTACGT 59.522 34.615 24.86 24.86 36.52 3.57
296 297 9.321590 GAATGGTACGAAAAACAATTGTACTAC 57.678 33.333 12.39 3.85 36.52 2.73
298 299 7.932335 TGAATGGTACGAAAAACAATTGTACT 58.068 30.769 12.39 0.00 36.52 2.73
299 300 8.563289 TTGAATGGTACGAAAAACAATTGTAC 57.437 30.769 12.39 4.16 35.75 2.90
300 301 9.582431 TTTTGAATGGTACGAAAAACAATTGTA 57.418 25.926 12.39 0.00 0.00 2.41
301 302 8.480643 TTTTGAATGGTACGAAAAACAATTGT 57.519 26.923 4.92 4.92 0.00 2.71
302 303 9.204792 GTTTTTGAATGGTACGAAAAACAATTG 57.795 29.630 3.24 3.24 43.22 2.32
303 304 8.936864 TGTTTTTGAATGGTACGAAAAACAATT 58.063 25.926 15.55 2.38 46.99 2.32
304 305 8.480643 TGTTTTTGAATGGTACGAAAAACAAT 57.519 26.923 15.55 0.00 46.99 2.71
305 306 7.884816 TGTTTTTGAATGGTACGAAAAACAA 57.115 28.000 15.55 6.70 46.99 2.83
307 308 6.890351 CGTTGTTTTTGAATGGTACGAAAAAC 59.110 34.615 0.00 0.00 43.67 2.43
308 309 6.585322 ACGTTGTTTTTGAATGGTACGAAAAA 59.415 30.769 0.00 0.00 34.02 1.94
310 311 5.512082 CACGTTGTTTTTGAATGGTACGAAA 59.488 36.000 0.00 0.00 0.00 3.46
311 312 5.029014 CACGTTGTTTTTGAATGGTACGAA 58.971 37.500 0.00 0.00 0.00 3.85
312 313 4.331992 TCACGTTGTTTTTGAATGGTACGA 59.668 37.500 0.00 0.00 0.00 3.43
314 315 5.974751 ACATCACGTTGTTTTTGAATGGTAC 59.025 36.000 0.00 0.00 0.00 3.34
315 316 6.137794 ACATCACGTTGTTTTTGAATGGTA 57.862 33.333 0.00 0.00 0.00 3.25
317 318 5.964887 AACATCACGTTGTTTTTGAATGG 57.035 34.783 0.00 0.00 36.43 3.16
318 319 9.746711 TTTTTAACATCACGTTGTTTTTGAATG 57.253 25.926 10.66 0.00 40.25 2.67
388 389 9.747898 ACATGAACTGTTTTTACATCCCTATAA 57.252 29.630 0.00 0.00 32.90 0.98
389 390 9.173021 CACATGAACTGTTTTTACATCCCTATA 57.827 33.333 0.00 0.00 35.29 1.31
390 391 7.122650 CCACATGAACTGTTTTTACATCCCTAT 59.877 37.037 0.00 0.00 35.29 2.57
391 392 6.432783 CCACATGAACTGTTTTTACATCCCTA 59.567 38.462 0.00 0.00 35.29 3.53
392 393 5.243730 CCACATGAACTGTTTTTACATCCCT 59.756 40.000 0.00 0.00 35.29 4.20
393 394 5.010617 ACCACATGAACTGTTTTTACATCCC 59.989 40.000 0.00 0.00 35.29 3.85
395 396 9.522804 TTAAACCACATGAACTGTTTTTACATC 57.477 29.630 0.00 0.00 35.29 3.06
405 2394 8.195617 ACATTTTTGTTAAACCACATGAACTG 57.804 30.769 0.00 0.00 0.00 3.16
454 2443 9.877178 TGTTAAACTTTTTCCATGTACACATTT 57.123 25.926 0.00 0.00 33.61 2.32
457 2446 9.877178 AAATGTTAAACTTTTTCCATGTACACA 57.123 25.926 0.00 0.00 0.00 3.72
486 2475 8.934507 AAAATACATGTTTTGGACTTTTTCGA 57.065 26.923 2.30 0.00 30.55 3.71
539 2531 8.399425 TGTCCATTTTTATATACGCGTTGAAAT 58.601 29.630 20.78 7.38 0.00 2.17
540 2532 7.749808 TGTCCATTTTTATATACGCGTTGAAA 58.250 30.769 20.78 6.12 0.00 2.69
562 2575 9.515020 TGTCTAATTTTCTCAAAACACATTGTC 57.485 29.630 0.00 0.00 32.37 3.18
603 2616 9.898152 TCAACCATTTCCTTTTTGTTTTTATCT 57.102 25.926 0.00 0.00 0.00 1.98
605 2618 9.898152 TCTCAACCATTTCCTTTTTGTTTTTAT 57.102 25.926 0.00 0.00 0.00 1.40
606 2619 9.726438 TTCTCAACCATTTCCTTTTTGTTTTTA 57.274 25.926 0.00 0.00 0.00 1.52
611 2624 5.660864 TCCTTCTCAACCATTTCCTTTTTGT 59.339 36.000 0.00 0.00 0.00 2.83
612 2625 6.160576 TCCTTCTCAACCATTTCCTTTTTG 57.839 37.500 0.00 0.00 0.00 2.44
619 2632 5.118990 TGATCGATCCTTCTCAACCATTTC 58.881 41.667 22.31 0.00 0.00 2.17
649 2676 2.027625 CGTTGGGGCAGAACGTCTC 61.028 63.158 10.97 0.00 41.00 3.36
650 2677 2.030562 CGTTGGGGCAGAACGTCT 59.969 61.111 10.97 0.00 41.00 4.18
651 2678 3.723348 GCGTTGGGGCAGAACGTC 61.723 66.667 17.88 9.37 46.25 4.34
659 2686 3.365265 CTCTGTTGGCGTTGGGGC 61.365 66.667 0.00 0.00 42.69 5.80
660 2687 1.228124 TTCTCTGTTGGCGTTGGGG 60.228 57.895 0.00 0.00 0.00 4.96
661 2688 1.237285 CCTTCTCTGTTGGCGTTGGG 61.237 60.000 0.00 0.00 0.00 4.12
662 2689 0.250295 TCCTTCTCTGTTGGCGTTGG 60.250 55.000 0.00 0.00 0.00 3.77
663 2690 1.593196 TTCCTTCTCTGTTGGCGTTG 58.407 50.000 0.00 0.00 0.00 4.10
664 2691 2.154462 CATTCCTTCTCTGTTGGCGTT 58.846 47.619 0.00 0.00 0.00 4.84
665 2692 1.072331 ACATTCCTTCTCTGTTGGCGT 59.928 47.619 0.00 0.00 0.00 5.68
666 2693 1.466167 CACATTCCTTCTCTGTTGGCG 59.534 52.381 0.00 0.00 0.00 5.69
667 2694 1.815003 CCACATTCCTTCTCTGTTGGC 59.185 52.381 0.00 0.00 0.00 4.52
683 2710 1.978580 GAGGAGGAGAAAGGAACCACA 59.021 52.381 0.00 0.00 0.00 4.17
688 2715 2.552367 GGAAGGAGGAGGAGAAAGGAA 58.448 52.381 0.00 0.00 0.00 3.36
689 2716 1.619977 CGGAAGGAGGAGGAGAAAGGA 60.620 57.143 0.00 0.00 0.00 3.36
690 2717 0.827368 CGGAAGGAGGAGGAGAAAGG 59.173 60.000 0.00 0.00 0.00 3.11
691 2718 1.562783 ACGGAAGGAGGAGGAGAAAG 58.437 55.000 0.00 0.00 0.00 2.62
768 2795 7.416890 CGGTTGTCTCTTATCTCCAAAGTCTAT 60.417 40.741 0.00 0.00 0.00 1.98
769 2796 6.127703 CGGTTGTCTCTTATCTCCAAAGTCTA 60.128 42.308 0.00 0.00 0.00 2.59
770 2797 5.336849 CGGTTGTCTCTTATCTCCAAAGTCT 60.337 44.000 0.00 0.00 0.00 3.24
778 2806 3.126831 CCATGCGGTTGTCTCTTATCTC 58.873 50.000 0.00 0.00 0.00 2.75
795 2823 0.318699 ATATGCCGACGACGACCATG 60.319 55.000 9.28 0.00 42.66 3.66
813 2841 0.879839 GCGGTGGCAGCAACAAAAAT 60.880 50.000 17.80 0.00 39.62 1.82
814 2842 1.520342 GCGGTGGCAGCAACAAAAA 60.520 52.632 17.80 0.00 39.62 1.94
817 2845 3.594775 CAGCGGTGGCAGCAACAA 61.595 61.111 17.80 0.00 43.41 2.83
855 2883 1.639298 GATGTTCGTGGCTGCTGGTC 61.639 60.000 0.00 0.00 0.00 4.02
859 2887 0.952497 CACAGATGTTCGTGGCTGCT 60.952 55.000 0.00 0.00 31.74 4.24
860 2888 1.499056 CACAGATGTTCGTGGCTGC 59.501 57.895 0.00 0.00 31.74 5.25
920 2949 1.274728 GTTTCTCTGGCAGCTGAGAGA 59.725 52.381 24.21 24.21 42.40 3.10
924 2953 0.469494 TGTGTTTCTCTGGCAGCTGA 59.531 50.000 20.43 7.78 0.00 4.26
928 2972 1.239968 GGGCTGTGTTTCTCTGGCAG 61.240 60.000 8.58 8.58 0.00 4.85
929 2973 1.228245 GGGCTGTGTTTCTCTGGCA 60.228 57.895 0.00 0.00 0.00 4.92
930 2974 1.073897 AGGGCTGTGTTTCTCTGGC 59.926 57.895 0.00 0.00 0.00 4.85
981 3036 3.439293 CATATCGCCGATGATCACTACC 58.561 50.000 10.41 0.00 0.00 3.18
1022 3082 4.771356 TCTTTCGCCTCGTCGCCG 62.771 66.667 0.00 0.00 0.00 6.46
1178 3241 3.119919 CCTCAGAGTACCACGTACAGAAC 60.120 52.174 4.86 0.00 41.03 3.01
1187 3250 3.369576 GGGTTCATTCCTCAGAGTACCAC 60.370 52.174 0.00 0.00 0.00 4.16
1199 3262 0.954452 GCCATGATCGGGTTCATTCC 59.046 55.000 0.00 0.00 34.09 3.01
1240 3370 0.752009 TAGATGCGCGGTCTTCTCCT 60.752 55.000 18.48 0.98 0.00 3.69
1406 3540 1.404035 GTGTGAGTTTGGTGGTTGTCC 59.596 52.381 0.00 0.00 0.00 4.02
1488 3706 1.651138 GCTCGATCACGTCTTTCTGTG 59.349 52.381 0.00 0.00 40.69 3.66
1489 3707 1.402984 GGCTCGATCACGTCTTTCTGT 60.403 52.381 0.00 0.00 40.69 3.41
1555 3828 4.052229 ACTCGCTTCACCGTCCCG 62.052 66.667 0.00 0.00 0.00 5.14
1740 4030 1.590238 GCATCACCGTTTCATCTCTCG 59.410 52.381 0.00 0.00 0.00 4.04
1910 4222 1.345089 CAGGGAGAGGATGATGCTGAG 59.655 57.143 0.00 0.00 0.00 3.35
1913 4225 0.400237 AGCAGGGAGAGGATGATGCT 60.400 55.000 0.00 0.00 39.09 3.79
1917 4229 1.548809 CGGATAGCAGGGAGAGGATGA 60.549 57.143 0.00 0.00 0.00 2.92
1951 4263 4.280929 GGCTGGGTTTTGATTCTTTACTGT 59.719 41.667 0.00 0.00 0.00 3.55
1952 4264 4.615912 CGGCTGGGTTTTGATTCTTTACTG 60.616 45.833 0.00 0.00 0.00 2.74
1954 4266 3.504520 TCGGCTGGGTTTTGATTCTTTAC 59.495 43.478 0.00 0.00 0.00 2.01
1956 4268 2.593026 TCGGCTGGGTTTTGATTCTTT 58.407 42.857 0.00 0.00 0.00 2.52
1974 4286 9.650371 CCATGTAAATAAAACTCACATGTATCG 57.350 33.333 0.00 0.00 43.07 2.92
1975 4287 9.450807 GCCATGTAAATAAAACTCACATGTATC 57.549 33.333 0.00 0.00 43.07 2.24
2001 4344 3.879682 CATGGCATGGGACGCACG 61.880 66.667 19.80 0.00 0.00 5.34
2002 4345 1.825191 ATCATGGCATGGGACGCAC 60.825 57.895 26.15 0.00 0.00 5.34
2003 4346 1.824760 CATCATGGCATGGGACGCA 60.825 57.895 26.15 7.19 0.00 5.24
2004 4347 1.386525 AACATCATGGCATGGGACGC 61.387 55.000 26.15 0.00 0.00 5.19
2005 4348 1.875514 CTAACATCATGGCATGGGACG 59.124 52.381 26.15 14.50 0.00 4.79
2006 4349 2.233271 CCTAACATCATGGCATGGGAC 58.767 52.381 26.15 0.00 0.00 4.46
2007 4350 1.145531 CCCTAACATCATGGCATGGGA 59.854 52.381 26.15 9.49 35.64 4.37
2008 4351 1.624336 CCCTAACATCATGGCATGGG 58.376 55.000 26.15 20.18 0.00 4.00
2009 4352 1.145531 TCCCCTAACATCATGGCATGG 59.854 52.381 26.15 14.18 0.00 3.66
2010 4353 2.662535 TCCCCTAACATCATGGCATG 57.337 50.000 21.42 21.42 0.00 4.06
2011 4354 2.718062 TCATCCCCTAACATCATGGCAT 59.282 45.455 0.00 0.00 0.00 4.40
2012 4355 2.134354 TCATCCCCTAACATCATGGCA 58.866 47.619 0.00 0.00 0.00 4.92
2013 4356 2.957402 TCATCCCCTAACATCATGGC 57.043 50.000 0.00 0.00 0.00 4.40
2075 4418 0.676466 TGTGCACCATTGGGATCGAC 60.676 55.000 15.69 0.00 38.05 4.20
2103 4446 1.008309 GTATCTCCGCTCGGCAGAC 60.008 63.158 2.96 0.00 34.68 3.51
2121 4464 3.578272 CTCCTCCTCCGCGACGAG 61.578 72.222 8.23 6.53 0.00 4.18
2151 4494 3.077519 GCCCGCAGACGATGTACCT 62.078 63.158 0.00 0.00 43.93 3.08
2168 4511 4.309950 ACGACGGTGGGGTTGAGC 62.310 66.667 0.00 0.00 0.00 4.26
2238 4581 3.079960 AGACATTCGTGCGTACCTATG 57.920 47.619 9.91 9.91 0.00 2.23
2265 4608 3.129502 CACGCCATGGCCAGAGTG 61.130 66.667 30.79 26.17 37.98 3.51
2281 4627 0.104855 AGTGCACGAGCTTCAGAACA 59.895 50.000 12.01 0.00 42.74 3.18
2302 4648 6.665474 ACAAAACACTTACGTACACATTGA 57.335 33.333 0.00 0.00 0.00 2.57
2384 4736 1.733041 CTTGACGAGCTTCGCCGAA 60.733 57.895 0.00 0.00 45.12 4.30
2456 4808 0.183731 CCAAGGCCCTTCCATACTCC 59.816 60.000 0.00 0.00 37.29 3.85
2498 4856 3.471680 GCCTGGTTCTAAGATCCATCAC 58.528 50.000 0.00 0.00 31.96 3.06
2503 4861 2.365617 TCATCGCCTGGTTCTAAGATCC 59.634 50.000 0.00 0.00 0.00 3.36
2558 4919 5.163322 ACACCCACATTTCATCATTTGTGTT 60.163 36.000 0.00 0.00 38.19 3.32
2646 5016 3.616956 ACGTTCATGATGTGAGGACAT 57.383 42.857 0.00 0.00 46.01 3.06
2653 5023 5.791367 ATTCAGAGAACGTTCATGATGTG 57.209 39.130 28.78 16.74 0.00 3.21
2671 5041 6.710278 TCTCATCAGACACAACCATTATTCA 58.290 36.000 0.00 0.00 0.00 2.57
2730 5101 1.352114 GCGGTTTATCTACGTGTGCA 58.648 50.000 0.00 0.00 0.00 4.57
2733 5104 2.973694 ATGGCGGTTTATCTACGTGT 57.026 45.000 0.00 0.00 0.00 4.49
2807 5178 8.170730 ACTAAAGGTGAGGGAAAAGTAATTCAT 58.829 33.333 0.00 0.00 0.00 2.57
2808 5179 7.523415 ACTAAAGGTGAGGGAAAAGTAATTCA 58.477 34.615 0.00 0.00 0.00 2.57
2809 5180 7.997773 ACTAAAGGTGAGGGAAAAGTAATTC 57.002 36.000 0.00 0.00 0.00 2.17
2869 5964 7.658525 AACATGGGTCAAATCATATGCTAAA 57.341 32.000 0.00 0.00 0.00 1.85
2889 5984 8.818057 GTCAGATCGTGCTATACTTTTAAACAT 58.182 33.333 0.00 0.00 0.00 2.71
2945 6040 1.202722 GCATTAGCCCGGTTAGCCTAA 60.203 52.381 0.00 0.00 33.58 2.69
2963 6083 4.402528 CCATCGTTGACCCCGGCA 62.403 66.667 0.00 0.00 0.00 5.69
3005 6131 0.527113 CCTTGCGATTTGCCATGTCA 59.473 50.000 0.00 0.00 45.60 3.58
3007 6133 0.244450 CACCTTGCGATTTGCCATGT 59.756 50.000 0.00 0.00 45.60 3.21
3031 6158 2.401583 ATCACCAGCACATTTAGCGA 57.598 45.000 0.00 0.00 37.01 4.93
3049 6176 3.650948 GGTGGTAGGGTAACTGGTCTAT 58.349 50.000 0.00 0.00 0.00 1.98
3091 6219 4.525100 TCCAATGTGCCTTTACCCTTTTAC 59.475 41.667 0.00 0.00 0.00 2.01
3093 6221 3.578282 CTCCAATGTGCCTTTACCCTTTT 59.422 43.478 0.00 0.00 0.00 2.27
3133 6261 0.825425 TCGGGTACAACACGTGGGTA 60.825 55.000 21.57 18.11 46.74 3.69
3143 6271 3.119388 CGTCCTATTTGACTCGGGTACAA 60.119 47.826 0.00 0.00 32.97 2.41
3146 6274 3.003394 TCGTCCTATTTGACTCGGGTA 57.997 47.619 0.00 0.00 32.97 3.69
3151 6279 6.145338 TCCTATGTTCGTCCTATTTGACTC 57.855 41.667 0.00 0.00 32.97 3.36
3156 6284 3.967987 AGCCTCCTATGTTCGTCCTATTT 59.032 43.478 0.00 0.00 0.00 1.40
3189 6317 4.168088 GGGGATCTGAGGGGATTAGAAAAA 59.832 45.833 0.00 0.00 0.00 1.94
3192 6320 2.429383 GGGGGATCTGAGGGGATTAGAA 60.429 54.545 0.00 0.00 0.00 2.10
3198 6326 1.536559 TTGAGGGGGATCTGAGGGGA 61.537 60.000 0.00 0.00 0.00 4.81
3207 6757 5.842339 ACAAGATAAATTGTTGAGGGGGAT 58.158 37.500 0.00 0.00 40.47 3.85
3208 6758 5.269554 ACAAGATAAATTGTTGAGGGGGA 57.730 39.130 0.00 0.00 40.47 4.81
3223 6773 4.922206 AGGCAAGATCCACAAACAAGATA 58.078 39.130 0.00 0.00 0.00 1.98
3229 6779 1.546029 GGGAAGGCAAGATCCACAAAC 59.454 52.381 0.00 0.00 37.46 2.93
3239 6789 1.341383 ACTTAGGCATGGGAAGGCAAG 60.341 52.381 0.00 0.00 0.00 4.01
3243 6794 4.236527 ACTTTACTTAGGCATGGGAAGG 57.763 45.455 0.00 0.00 0.00 3.46
3272 6823 4.559862 TTTTGTTTTTGCAGGGAAGGAA 57.440 36.364 0.00 0.00 0.00 3.36
3276 6827 8.744568 AGATTTATTTTTGTTTTTGCAGGGAA 57.255 26.923 0.00 0.00 0.00 3.97
3277 6828 7.443879 GGAGATTTATTTTTGTTTTTGCAGGGA 59.556 33.333 0.00 0.00 0.00 4.20
3278 6829 7.445096 AGGAGATTTATTTTTGTTTTTGCAGGG 59.555 33.333 0.00 0.00 0.00 4.45
3279 6830 8.382030 AGGAGATTTATTTTTGTTTTTGCAGG 57.618 30.769 0.00 0.00 0.00 4.85
3280 6831 9.264719 AGAGGAGATTTATTTTTGTTTTTGCAG 57.735 29.630 0.00 0.00 0.00 4.41
3310 6861 8.940952 CACAAAATAGGAAGAAACAACCAAAAA 58.059 29.630 0.00 0.00 0.00 1.94
3311 6862 8.097662 ACACAAAATAGGAAGAAACAACCAAAA 58.902 29.630 0.00 0.00 0.00 2.44
3320 6871 8.729805 AAAAATGCACACAAAATAGGAAGAAA 57.270 26.923 0.00 0.00 0.00 2.52
3354 6905 6.969993 TTTGCCAATAATTAGGGTATCACC 57.030 37.500 7.56 0.00 37.60 4.02
3406 6957 8.878769 CCAGCTAAAACAAACTAACAAACAAAT 58.121 29.630 0.00 0.00 0.00 2.32
3408 6959 7.603651 TCCAGCTAAAACAAACTAACAAACAA 58.396 30.769 0.00 0.00 0.00 2.83
3409 6960 7.159322 TCCAGCTAAAACAAACTAACAAACA 57.841 32.000 0.00 0.00 0.00 2.83
3410 6961 8.468720 TTTCCAGCTAAAACAAACTAACAAAC 57.531 30.769 0.00 0.00 0.00 2.93
3411 6962 9.660180 AATTTCCAGCTAAAACAAACTAACAAA 57.340 25.926 0.00 0.00 0.00 2.83
3425 6976 9.853555 CACACAACATTTATAATTTCCAGCTAA 57.146 29.630 0.00 0.00 0.00 3.09
3426 6977 9.237187 TCACACAACATTTATAATTTCCAGCTA 57.763 29.630 0.00 0.00 0.00 3.32
3428 6979 8.931385 ATCACACAACATTTATAATTTCCAGC 57.069 30.769 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.