Multiple sequence alignment - TraesCS2B01G506600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G506600 chr2B 100.000 4046 0 0 1 4046 703625682 703621637 0.000000e+00 7472.0
1 TraesCS2B01G506600 chr2B 96.460 113 4 0 425 537 758121019 758120907 1.920000e-43 187.0
2 TraesCS2B01G506600 chr2B 96.429 112 4 0 426 537 1517547 1517658 6.910000e-43 185.0
3 TraesCS2B01G506600 chr2B 97.059 34 0 1 358 391 90784659 90784691 5.650000e-04 56.5
4 TraesCS2B01G506600 chr2A 90.851 2820 141 62 569 3322 718385646 718382878 0.000000e+00 3670.0
5 TraesCS2B01G506600 chr2A 92.196 551 27 6 2531 3080 1608659 1609194 0.000000e+00 765.0
6 TraesCS2B01G506600 chr2A 84.615 104 10 4 323 425 718385753 718385655 9.250000e-17 99.0
7 TraesCS2B01G506600 chr2D 91.988 2596 93 57 603 3158 584258614 584256094 0.000000e+00 3535.0
8 TraesCS2B01G506600 chr2D 95.671 231 9 1 3817 4046 584254472 584254242 1.780000e-98 370.0
9 TraesCS2B01G506600 chr2D 83.221 447 25 10 3397 3820 584255580 584255161 8.260000e-97 364.0
10 TraesCS2B01G506600 chr2D 90.710 183 14 3 4 185 194818928 194819108 1.450000e-59 241.0
11 TraesCS2B01G506600 chr2D 90.710 183 14 3 4 185 558801539 558801359 1.450000e-59 241.0
12 TraesCS2B01G506600 chr2D 97.059 34 0 1 354 386 620608122 620608089 5.650000e-04 56.5
13 TraesCS2B01G506600 chr3A 89.599 1173 120 2 1876 3047 16631612 16632783 0.000000e+00 1489.0
14 TraesCS2B01G506600 chr3A 75.100 747 110 51 1008 1707 16629885 16630602 3.080000e-71 279.0
15 TraesCS2B01G506600 chr3B 89.201 1176 125 2 1876 3050 26752898 26751724 0.000000e+00 1467.0
16 TraesCS2B01G506600 chr3B 88.579 1182 133 2 1876 3056 14525616 14524436 0.000000e+00 1434.0
17 TraesCS2B01G506600 chr3B 74.870 768 108 55 1008 1721 14526516 14525780 1.850000e-68 270.0
18 TraesCS2B01G506600 chr3B 84.404 218 16 12 1008 1207 26753822 26753605 8.870000e-47 198.0
19 TraesCS2B01G506600 chr3B 96.429 112 4 0 428 539 928998 929109 6.910000e-43 185.0
20 TraesCS2B01G506600 chr3D 89.173 1173 125 2 1876 3047 10454963 10456134 0.000000e+00 1461.0
21 TraesCS2B01G506600 chr3D 74.000 750 128 48 1008 1707 10453849 10454581 4.040000e-60 243.0
22 TraesCS2B01G506600 chr7A 80.884 1177 211 12 1876 3045 207901380 207900211 0.000000e+00 915.0
23 TraesCS2B01G506600 chr7A 88.830 188 20 1 1 188 672041196 672041382 3.150000e-56 230.0
24 TraesCS2B01G506600 chr7B 80.759 1185 210 16 1871 3046 162779676 162780851 0.000000e+00 909.0
25 TraesCS2B01G506600 chr7B 100.000 28 0 0 253 280 19200966 19200993 7.000000e-03 52.8
26 TraesCS2B01G506600 chr7D 80.390 1178 213 16 1874 3042 198622870 198621702 0.000000e+00 880.0
27 TraesCS2B01G506600 chr7D 88.889 189 20 1 1 189 27554011 27554198 8.750000e-57 231.0
28 TraesCS2B01G506600 chr7D 88.482 191 20 2 1 190 597671737 597671548 3.150000e-56 230.0
29 TraesCS2B01G506600 chrUn 93.466 551 28 4 2531 3080 337092337 337092880 0.000000e+00 811.0
30 TraesCS2B01G506600 chr5A 90.222 450 33 3 2638 3079 219244659 219245105 9.750000e-161 577.0
31 TraesCS2B01G506600 chr5A 87.745 204 21 3 2 202 436885191 436885393 6.760000e-58 235.0
32 TraesCS2B01G506600 chr5D 92.353 170 12 1 1 170 202399424 202399592 1.450000e-59 241.0
33 TraesCS2B01G506600 chr6B 89.840 187 15 4 1 186 536831355 536831172 1.880000e-58 237.0
34 TraesCS2B01G506600 chr6B 92.800 125 6 3 429 550 214085048 214085172 1.160000e-40 178.0
35 TraesCS2B01G506600 chr1D 89.785 186 17 2 1 185 445988110 445987926 1.880000e-58 237.0
36 TraesCS2B01G506600 chr1D 93.496 123 6 2 430 551 349422925 349423046 8.930000e-42 182.0
37 TraesCS2B01G506600 chr6A 97.297 111 3 0 426 536 587781956 587782066 5.340000e-44 189.0
38 TraesCS2B01G506600 chr6A 90.977 133 9 3 405 537 150232467 150232596 4.160000e-40 176.0
39 TraesCS2B01G506600 chr1B 96.296 108 4 0 430 537 4546079 4546186 1.160000e-40 178.0
40 TraesCS2B01G506600 chr1A 91.406 128 7 3 411 537 546033805 546033681 5.380000e-39 172.0
41 TraesCS2B01G506600 chr4A 92.308 39 3 0 242 280 311248944 311248982 5.650000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G506600 chr2B 703621637 703625682 4045 True 7472.0 7472 100.000000 1 4046 1 chr2B.!!$R1 4045
1 TraesCS2B01G506600 chr2A 718382878 718385753 2875 True 1884.5 3670 87.733000 323 3322 2 chr2A.!!$R1 2999
2 TraesCS2B01G506600 chr2A 1608659 1609194 535 False 765.0 765 92.196000 2531 3080 1 chr2A.!!$F1 549
3 TraesCS2B01G506600 chr2D 584254242 584258614 4372 True 1423.0 3535 90.293333 603 4046 3 chr2D.!!$R3 3443
4 TraesCS2B01G506600 chr3A 16629885 16632783 2898 False 884.0 1489 82.349500 1008 3047 2 chr3A.!!$F1 2039
5 TraesCS2B01G506600 chr3B 14524436 14526516 2080 True 852.0 1434 81.724500 1008 3056 2 chr3B.!!$R1 2048
6 TraesCS2B01G506600 chr3B 26751724 26753822 2098 True 832.5 1467 86.802500 1008 3050 2 chr3B.!!$R2 2042
7 TraesCS2B01G506600 chr3D 10453849 10456134 2285 False 852.0 1461 81.586500 1008 3047 2 chr3D.!!$F1 2039
8 TraesCS2B01G506600 chr7A 207900211 207901380 1169 True 915.0 915 80.884000 1876 3045 1 chr7A.!!$R1 1169
9 TraesCS2B01G506600 chr7B 162779676 162780851 1175 False 909.0 909 80.759000 1871 3046 1 chr7B.!!$F2 1175
10 TraesCS2B01G506600 chr7D 198621702 198622870 1168 True 880.0 880 80.390000 1874 3042 1 chr7D.!!$R1 1168
11 TraesCS2B01G506600 chrUn 337092337 337092880 543 False 811.0 811 93.466000 2531 3080 1 chrUn.!!$F1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
872 900 0.03496 TCTCTCTCACGGAGTCCAGG 60.035 60.0 10.49 0.0 41.61 4.45 F
1650 1789 0.11714 ATCACTCCCAGGTCAGGTCA 59.883 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 2959 0.508641 CACCAAGAAACAGAGTCGCG 59.491 55.0 0.00 0.0 0.0 5.87 R
3496 5041 0.322975 ATGGTCTGACTGTCTGTGCC 59.677 55.0 9.51 14.3 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.781834 AACATATACAACAACAAATCAATACCG 57.218 29.630 0.00 0.00 0.00 4.02
39 40 8.952278 ACATATACAACAACAAATCAATACCGT 58.048 29.630 0.00 0.00 0.00 4.83
40 41 9.781834 CATATACAACAACAAATCAATACCGTT 57.218 29.630 0.00 0.00 0.00 4.44
41 42 9.781834 ATATACAACAACAAATCAATACCGTTG 57.218 29.630 0.00 0.00 42.04 4.10
42 43 5.285651 ACAACAACAAATCAATACCGTTGG 58.714 37.500 0.00 0.00 40.92 3.77
43 44 5.067936 ACAACAACAAATCAATACCGTTGGA 59.932 36.000 0.00 0.00 40.92 3.53
44 45 5.975693 ACAACAAATCAATACCGTTGGAT 57.024 34.783 0.00 0.00 40.92 3.41
45 46 6.339587 ACAACAAATCAATACCGTTGGATT 57.660 33.333 0.00 0.00 40.92 3.01
46 47 6.754193 ACAACAAATCAATACCGTTGGATTT 58.246 32.000 0.00 0.00 40.92 2.17
47 48 7.887381 ACAACAAATCAATACCGTTGGATTTA 58.113 30.769 0.00 0.00 40.92 1.40
48 49 8.527810 ACAACAAATCAATACCGTTGGATTTAT 58.472 29.630 0.00 0.00 40.92 1.40
49 50 9.364989 CAACAAATCAATACCGTTGGATTTATT 57.635 29.630 0.00 0.00 37.75 1.40
55 56 8.982091 TCAATACCGTTGGATTTATTATTGGA 57.018 30.769 0.00 0.00 0.00 3.53
56 57 9.581289 TCAATACCGTTGGATTTATTATTGGAT 57.419 29.630 0.00 0.00 0.00 3.41
57 58 9.624697 CAATACCGTTGGATTTATTATTGGATG 57.375 33.333 0.00 0.00 0.00 3.51
58 59 9.581289 AATACCGTTGGATTTATTATTGGATGA 57.419 29.630 0.00 0.00 0.00 2.92
59 60 7.889873 ACCGTTGGATTTATTATTGGATGAA 57.110 32.000 0.00 0.00 0.00 2.57
60 61 8.477419 ACCGTTGGATTTATTATTGGATGAAT 57.523 30.769 0.00 0.00 0.00 2.57
61 62 8.923270 ACCGTTGGATTTATTATTGGATGAATT 58.077 29.630 0.00 0.00 0.00 2.17
62 63 9.762933 CCGTTGGATTTATTATTGGATGAATTT 57.237 29.630 0.00 0.00 0.00 1.82
138 139 9.883142 ACTTGGTCAAAATTTTATGAAGTTTGA 57.117 25.926 2.44 12.32 0.00 2.69
140 141 9.883142 TTGGTCAAAATTTTATGAAGTTTGACT 57.117 25.926 28.44 3.65 31.44 3.41
141 142 9.883142 TGGTCAAAATTTTATGAAGTTTGACTT 57.117 25.926 28.44 0.00 41.95 3.01
161 162 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
162 163 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
163 164 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
175 176 8.972262 TCTAATATGCAGAGTAAATAGAAGCG 57.028 34.615 0.00 0.00 0.00 4.68
176 177 8.793592 TCTAATATGCAGAGTAAATAGAAGCGA 58.206 33.333 0.00 0.00 0.00 4.93
177 178 7.644986 AATATGCAGAGTAAATAGAAGCGAC 57.355 36.000 0.00 0.00 0.00 5.19
178 179 3.435566 TGCAGAGTAAATAGAAGCGACG 58.564 45.455 0.00 0.00 0.00 5.12
179 180 2.789893 GCAGAGTAAATAGAAGCGACGG 59.210 50.000 0.00 0.00 0.00 4.79
180 181 3.372954 CAGAGTAAATAGAAGCGACGGG 58.627 50.000 0.00 0.00 0.00 5.28
181 182 3.066342 CAGAGTAAATAGAAGCGACGGGA 59.934 47.826 0.00 0.00 0.00 5.14
182 183 3.315749 AGAGTAAATAGAAGCGACGGGAG 59.684 47.826 0.00 0.00 0.00 4.30
202 203 8.809066 ACGGGAGTATTACATAATATGCTTACA 58.191 33.333 0.00 0.00 44.60 2.41
203 204 9.817809 CGGGAGTATTACATAATATGCTTACAT 57.182 33.333 0.00 0.00 40.49 2.29
252 253 9.955208 ACATATAACATGCAAAACTATCACATG 57.045 29.630 0.00 0.00 42.92 3.21
255 256 5.063180 ACATGCAAAACTATCACATGTGG 57.937 39.130 25.16 12.14 46.99 4.17
256 257 4.523943 ACATGCAAAACTATCACATGTGGT 59.476 37.500 25.16 21.41 46.99 4.16
257 258 5.709631 ACATGCAAAACTATCACATGTGGTA 59.290 36.000 25.16 21.37 46.99 3.25
258 259 5.878332 TGCAAAACTATCACATGTGGTAG 57.122 39.130 34.53 34.53 46.84 3.18
259 260 5.555966 TGCAAAACTATCACATGTGGTAGA 58.444 37.500 40.00 21.56 44.89 2.59
260 261 6.179756 TGCAAAACTATCACATGTGGTAGAT 58.820 36.000 40.00 30.61 44.89 1.98
261 262 7.334858 TGCAAAACTATCACATGTGGTAGATA 58.665 34.615 40.00 23.16 44.89 1.98
262 263 7.826744 TGCAAAACTATCACATGTGGTAGATAA 59.173 33.333 40.00 21.68 44.89 1.75
263 264 8.673711 GCAAAACTATCACATGTGGTAGATAAA 58.326 33.333 40.00 16.12 44.89 1.40
271 272 8.050778 TCACATGTGGTAGATAAAATTTGTCC 57.949 34.615 25.16 0.00 0.00 4.02
272 273 7.888021 TCACATGTGGTAGATAAAATTTGTCCT 59.112 33.333 25.16 0.00 0.00 3.85
273 274 9.173021 CACATGTGGTAGATAAAATTTGTCCTA 57.827 33.333 18.51 0.00 0.00 2.94
274 275 9.920946 ACATGTGGTAGATAAAATTTGTCCTAT 57.079 29.630 0.00 0.00 0.00 2.57
424 425 9.050601 GCTTTTTATGAGCTGATTAGTATGACT 57.949 33.333 0.00 0.00 37.18 3.41
426 427 9.890629 TTTTTATGAGCTGATTAGTATGACTGT 57.109 29.630 0.00 0.00 0.00 3.55
430 431 8.926092 ATGAGCTGATTAGTATGACTGTAGTA 57.074 34.615 0.00 0.00 0.00 1.82
431 432 8.155821 TGAGCTGATTAGTATGACTGTAGTAC 57.844 38.462 0.00 0.00 0.00 2.73
432 433 7.993758 TGAGCTGATTAGTATGACTGTAGTACT 59.006 37.037 0.00 0.00 33.55 2.73
433 434 8.385898 AGCTGATTAGTATGACTGTAGTACTC 57.614 38.462 0.00 0.00 31.58 2.59
434 435 7.446013 AGCTGATTAGTATGACTGTAGTACTCC 59.554 40.741 0.00 0.00 31.58 3.85
435 436 7.308710 GCTGATTAGTATGACTGTAGTACTCCC 60.309 44.444 0.00 0.00 31.58 4.30
436 437 7.813331 TGATTAGTATGACTGTAGTACTCCCT 58.187 38.462 0.00 0.00 31.58 4.20
437 438 7.937942 TGATTAGTATGACTGTAGTACTCCCTC 59.062 40.741 0.00 0.00 31.58 4.30
438 439 5.051409 AGTATGACTGTAGTACTCCCTCC 57.949 47.826 0.00 0.00 0.00 4.30
439 440 2.414994 TGACTGTAGTACTCCCTCCG 57.585 55.000 0.00 0.00 0.00 4.63
440 441 1.632409 TGACTGTAGTACTCCCTCCGT 59.368 52.381 0.00 0.00 0.00 4.69
441 442 2.040813 TGACTGTAGTACTCCCTCCGTT 59.959 50.000 0.00 0.00 0.00 4.44
442 443 2.682352 GACTGTAGTACTCCCTCCGTTC 59.318 54.545 0.00 0.00 0.00 3.95
443 444 1.669779 CTGTAGTACTCCCTCCGTTCG 59.330 57.143 0.00 0.00 0.00 3.95
444 445 1.020437 GTAGTACTCCCTCCGTTCGG 58.980 60.000 0.00 4.74 0.00 4.30
445 446 0.911769 TAGTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
446 447 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
447 448 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
448 449 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
449 450 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
450 451 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
451 452 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
452 453 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
453 454 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
454 455 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
455 456 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
456 457 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
457 458 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
458 459 3.190327 TCCGTTCGGAATTACTTGTCGTA 59.810 43.478 11.66 0.00 0.00 3.43
459 460 3.545078 CCGTTCGGAATTACTTGTCGTAG 59.455 47.826 5.19 0.00 0.00 3.51
460 461 4.406069 CGTTCGGAATTACTTGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
461 462 4.853196 CGTTCGGAATTACTTGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
462 463 5.343058 CGTTCGGAATTACTTGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
463 464 6.034256 CGTTCGGAATTACTTGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
464 465 7.218773 CGTTCGGAATTACTTGTCGTAGAAATA 59.781 37.037 0.00 0.00 39.69 1.40
465 466 8.529911 GTTCGGAATTACTTGTCGTAGAAATAG 58.470 37.037 0.00 0.00 39.69 1.73
466 467 7.988737 TCGGAATTACTTGTCGTAGAAATAGA 58.011 34.615 0.00 0.00 39.69 1.98
467 468 8.627403 TCGGAATTACTTGTCGTAGAAATAGAT 58.373 33.333 0.00 0.00 39.69 1.98
468 469 8.691727 CGGAATTACTTGTCGTAGAAATAGATG 58.308 37.037 0.00 0.00 39.69 2.90
469 470 9.530633 GGAATTACTTGTCGTAGAAATAGATGT 57.469 33.333 0.00 0.00 39.69 3.06
506 507 9.822185 ATTTTAGTTTTAGATGCATCCATTTCC 57.178 29.630 23.06 7.34 0.00 3.13
507 508 5.505173 AGTTTTAGATGCATCCATTTCCG 57.495 39.130 23.06 0.00 0.00 4.30
508 509 5.192927 AGTTTTAGATGCATCCATTTCCGA 58.807 37.500 23.06 0.00 0.00 4.55
509 510 5.297776 AGTTTTAGATGCATCCATTTCCGAG 59.702 40.000 23.06 0.00 0.00 4.63
510 511 4.687901 TTAGATGCATCCATTTCCGAGA 57.312 40.909 23.06 0.00 0.00 4.04
511 512 2.843701 AGATGCATCCATTTCCGAGAC 58.156 47.619 23.06 0.00 0.00 3.36
512 513 2.171237 AGATGCATCCATTTCCGAGACA 59.829 45.455 23.06 0.00 0.00 3.41
513 514 2.488204 TGCATCCATTTCCGAGACAA 57.512 45.000 0.00 0.00 0.00 3.18
514 515 2.358957 TGCATCCATTTCCGAGACAAG 58.641 47.619 0.00 0.00 0.00 3.16
515 516 2.290260 TGCATCCATTTCCGAGACAAGT 60.290 45.455 0.00 0.00 0.00 3.16
516 517 3.055458 TGCATCCATTTCCGAGACAAGTA 60.055 43.478 0.00 0.00 0.00 2.24
517 518 3.938963 GCATCCATTTCCGAGACAAGTAA 59.061 43.478 0.00 0.00 0.00 2.24
518 519 4.576463 GCATCCATTTCCGAGACAAGTAAT 59.424 41.667 0.00 0.00 0.00 1.89
519 520 5.066505 GCATCCATTTCCGAGACAAGTAATT 59.933 40.000 0.00 0.00 0.00 1.40
520 521 6.719365 CATCCATTTCCGAGACAAGTAATTC 58.281 40.000 0.00 0.00 0.00 2.17
521 522 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
522 523 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
523 524 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
524 525 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
525 526 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
526 527 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
527 528 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
528 529 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
529 530 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
530 531 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
531 532 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
532 533 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
533 534 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
534 535 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
535 536 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
536 537 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
537 538 1.308069 TTCCGAACGGAGGGAGTACG 61.308 60.000 15.34 0.00 46.06 3.67
538 539 1.746615 CCGAACGGAGGGAGTACGA 60.747 63.158 7.53 0.00 37.50 3.43
539 540 1.427020 CGAACGGAGGGAGTACGAC 59.573 63.158 0.00 0.00 0.00 4.34
540 541 1.300971 CGAACGGAGGGAGTACGACA 61.301 60.000 0.00 0.00 0.00 4.35
541 542 1.101331 GAACGGAGGGAGTACGACAT 58.899 55.000 0.00 0.00 0.00 3.06
542 543 1.475682 GAACGGAGGGAGTACGACATT 59.524 52.381 0.00 0.00 0.00 2.71
543 544 2.425143 ACGGAGGGAGTACGACATTA 57.575 50.000 0.00 0.00 0.00 1.90
544 545 2.295885 ACGGAGGGAGTACGACATTAG 58.704 52.381 0.00 0.00 0.00 1.73
545 546 2.295885 CGGAGGGAGTACGACATTAGT 58.704 52.381 0.00 0.00 0.00 2.24
546 547 3.118261 ACGGAGGGAGTACGACATTAGTA 60.118 47.826 0.00 0.00 0.00 1.82
547 548 3.497640 CGGAGGGAGTACGACATTAGTAG 59.502 52.174 0.00 0.00 0.00 2.57
548 549 4.459330 GGAGGGAGTACGACATTAGTAGT 58.541 47.826 0.00 0.00 37.38 2.73
549 550 5.615289 GGAGGGAGTACGACATTAGTAGTA 58.385 45.833 0.00 0.00 35.19 1.82
556 557 6.575083 GTACGACATTAGTAGTACGAGTGA 57.425 41.667 11.87 0.00 43.54 3.41
557 558 6.993878 GTACGACATTAGTAGTACGAGTGAA 58.006 40.000 11.87 0.00 43.54 3.18
558 559 6.104439 ACGACATTAGTAGTACGAGTGAAG 57.896 41.667 11.87 7.88 31.46 3.02
559 560 5.871524 ACGACATTAGTAGTACGAGTGAAGA 59.128 40.000 11.87 0.00 31.46 2.87
560 561 6.369890 ACGACATTAGTAGTACGAGTGAAGAA 59.630 38.462 11.87 0.00 31.46 2.52
561 562 7.095060 ACGACATTAGTAGTACGAGTGAAGAAA 60.095 37.037 11.87 0.00 31.46 2.52
562 563 7.425882 CGACATTAGTAGTACGAGTGAAGAAAG 59.574 40.741 11.87 0.00 0.00 2.62
563 564 8.108551 ACATTAGTAGTACGAGTGAAGAAAGT 57.891 34.615 11.87 0.00 0.00 2.66
564 565 9.224267 ACATTAGTAGTACGAGTGAAGAAAGTA 57.776 33.333 11.87 0.00 0.00 2.24
595 596 1.537202 GCACTCACTGTTTGGCCTAAG 59.463 52.381 3.32 0.00 0.00 2.18
599 600 4.520492 CACTCACTGTTTGGCCTAAGAAAT 59.480 41.667 3.32 0.00 0.00 2.17
600 601 4.762251 ACTCACTGTTTGGCCTAAGAAATC 59.238 41.667 3.32 0.00 0.00 2.17
601 602 4.985538 TCACTGTTTGGCCTAAGAAATCT 58.014 39.130 3.32 0.00 0.00 2.40
602 603 5.003804 TCACTGTTTGGCCTAAGAAATCTC 58.996 41.667 3.32 0.00 0.00 2.75
603 604 5.006386 CACTGTTTGGCCTAAGAAATCTCT 58.994 41.667 3.32 0.00 0.00 3.10
604 605 6.013725 TCACTGTTTGGCCTAAGAAATCTCTA 60.014 38.462 3.32 0.00 0.00 2.43
605 606 6.655003 CACTGTTTGGCCTAAGAAATCTCTAA 59.345 38.462 3.32 0.00 0.00 2.10
661 669 3.462678 GCACGTCCCTCTCCCTCC 61.463 72.222 0.00 0.00 0.00 4.30
663 671 3.273654 ACGTCCCTCTCCCTCCCA 61.274 66.667 0.00 0.00 0.00 4.37
664 672 2.038975 CGTCCCTCTCCCTCCCAA 59.961 66.667 0.00 0.00 0.00 4.12
665 673 2.060980 CGTCCCTCTCCCTCCCAAG 61.061 68.421 0.00 0.00 0.00 3.61
667 675 0.978667 GTCCCTCTCCCTCCCAAGTC 60.979 65.000 0.00 0.00 0.00 3.01
668 676 1.081092 CCCTCTCCCTCCCAAGTCA 59.919 63.158 0.00 0.00 0.00 3.41
669 677 1.268283 CCCTCTCCCTCCCAAGTCAC 61.268 65.000 0.00 0.00 0.00 3.67
670 678 1.268283 CCTCTCCCTCCCAAGTCACC 61.268 65.000 0.00 0.00 0.00 4.02
671 679 0.252467 CTCTCCCTCCCAAGTCACCT 60.252 60.000 0.00 0.00 0.00 4.00
672 680 0.193574 TCTCCCTCCCAAGTCACCTT 59.806 55.000 0.00 0.00 0.00 3.50
674 682 1.192146 TCCCTCCCAAGTCACCTTCG 61.192 60.000 0.00 0.00 0.00 3.79
675 683 1.481056 CCCTCCCAAGTCACCTTCGT 61.481 60.000 0.00 0.00 0.00 3.85
676 684 0.037232 CCTCCCAAGTCACCTTCGTC 60.037 60.000 0.00 0.00 0.00 4.20
677 685 0.969894 CTCCCAAGTCACCTTCGTCT 59.030 55.000 0.00 0.00 0.00 4.18
734 756 4.583871 GAGCAGATCCCTTTTCTCTTTCA 58.416 43.478 0.00 0.00 0.00 2.69
739 761 2.494059 TCCCTTTTCTCTTTCACGCAG 58.506 47.619 0.00 0.00 0.00 5.18
740 762 1.068954 CCCTTTTCTCTTTCACGCAGC 60.069 52.381 0.00 0.00 0.00 5.25
741 763 1.398960 CCTTTTCTCTTTCACGCAGCG 60.399 52.381 14.82 14.82 0.00 5.18
742 764 1.526887 CTTTTCTCTTTCACGCAGCGA 59.473 47.619 24.65 0.00 0.00 4.93
743 765 1.577468 TTTCTCTTTCACGCAGCGAA 58.423 45.000 24.65 2.66 0.00 4.70
744 766 0.859232 TTCTCTTTCACGCAGCGAAC 59.141 50.000 24.65 0.00 0.00 3.95
745 767 1.128611 CTCTTTCACGCAGCGAACG 59.871 57.895 24.65 9.61 0.00 3.95
840 864 0.035056 CCGCCTTTTCCTCCACTGAT 60.035 55.000 0.00 0.00 0.00 2.90
855 883 3.307506 CACTGATCCCTCCTCATCTTCT 58.692 50.000 0.00 0.00 0.00 2.85
872 900 0.034960 TCTCTCTCACGGAGTCCAGG 60.035 60.000 10.49 0.00 41.61 4.45
876 904 3.302347 CTCACGGAGTCCAGGCCAC 62.302 68.421 10.49 0.00 41.61 5.01
881 909 3.403558 GAGTCCAGGCCACCCCTC 61.404 72.222 5.01 0.56 44.09 4.30
882 910 3.933542 GAGTCCAGGCCACCCCTCT 62.934 68.421 5.01 0.00 44.09 3.69
883 911 3.403558 GTCCAGGCCACCCCTCTC 61.404 72.222 5.01 0.00 44.09 3.20
885 913 4.748798 CCAGGCCACCCCTCTCCT 62.749 72.222 5.01 0.00 44.09 3.69
887 915 4.423209 AGGCCACCCCTCTCCTCC 62.423 72.222 5.01 0.00 41.21 4.30
891 919 2.443016 CACCCCTCTCCTCCCTCG 60.443 72.222 0.00 0.00 0.00 4.63
894 922 2.837291 CCCTCTCCTCCCTCGCTG 60.837 72.222 0.00 0.00 0.00 5.18
899 927 2.043852 TCCTCCCTCGCTGTCTCC 60.044 66.667 0.00 0.00 0.00 3.71
900 928 2.043450 CCTCCCTCGCTGTCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
902 930 1.261238 CCTCCCTCGCTGTCTCCTTT 61.261 60.000 0.00 0.00 0.00 3.11
903 931 0.174617 CTCCCTCGCTGTCTCCTTTC 59.825 60.000 0.00 0.00 0.00 2.62
904 932 0.251832 TCCCTCGCTGTCTCCTTTCT 60.252 55.000 0.00 0.00 0.00 2.52
906 934 1.002544 CCCTCGCTGTCTCCTTTCTTT 59.997 52.381 0.00 0.00 0.00 2.52
907 935 2.342179 CCTCGCTGTCTCCTTTCTTTC 58.658 52.381 0.00 0.00 0.00 2.62
908 936 2.028567 CCTCGCTGTCTCCTTTCTTTCT 60.029 50.000 0.00 0.00 0.00 2.52
909 937 3.556004 CCTCGCTGTCTCCTTTCTTTCTT 60.556 47.826 0.00 0.00 0.00 2.52
910 938 3.654414 TCGCTGTCTCCTTTCTTTCTTC 58.346 45.455 0.00 0.00 0.00 2.87
919 949 2.421619 CTTTCTTTCTTCCTCTGCGCT 58.578 47.619 9.73 0.00 0.00 5.92
990 1023 3.291383 CGCGGAGGAGGAGCTAGG 61.291 72.222 0.00 0.00 0.00 3.02
992 1025 2.123683 CGGAGGAGGAGCTAGGCA 60.124 66.667 0.00 0.00 0.00 4.75
1228 1311 3.149981 TCCACTCACTACTCACTCACTG 58.850 50.000 0.00 0.00 0.00 3.66
1238 1321 4.558226 ACTCACTCACTGCATTCCATTA 57.442 40.909 0.00 0.00 0.00 1.90
1256 1355 6.342520 TCCATTAATCCCTCCCTGATCTAAT 58.657 40.000 0.00 0.00 0.00 1.73
1257 1356 6.445139 TCCATTAATCCCTCCCTGATCTAATC 59.555 42.308 0.00 0.00 0.00 1.75
1258 1357 6.344500 CATTAATCCCTCCCTGATCTAATCG 58.656 44.000 0.00 0.00 0.00 3.34
1440 1551 0.978667 TGGATCCCGTCGATTTCCCA 60.979 55.000 9.90 0.00 0.00 4.37
1473 1584 2.994995 TCGGCCGGCTCTCAAGAA 60.995 61.111 28.56 0.00 0.00 2.52
1577 1689 1.120530 TGTAAGGAATCTCTCGCCCC 58.879 55.000 0.00 0.00 0.00 5.80
1596 1717 2.814336 CCCTTTCTCACCTCCTTTTTCG 59.186 50.000 0.00 0.00 0.00 3.46
1647 1786 1.222936 GCATCACTCCCAGGTCAGG 59.777 63.158 0.00 0.00 0.00 3.86
1648 1787 1.557269 GCATCACTCCCAGGTCAGGT 61.557 60.000 0.00 0.00 0.00 4.00
1649 1788 0.539051 CATCACTCCCAGGTCAGGTC 59.461 60.000 0.00 0.00 0.00 3.85
1650 1789 0.117140 ATCACTCCCAGGTCAGGTCA 59.883 55.000 0.00 0.00 0.00 4.02
1651 1790 0.542938 TCACTCCCAGGTCAGGTCAG 60.543 60.000 0.00 0.00 0.00 3.51
1657 1796 3.325753 AGGTCAGGTCAGCAGGCC 61.326 66.667 0.00 0.00 0.00 5.19
1717 2344 0.943835 GCAAACATTTGTCGCCCACC 60.944 55.000 6.24 0.00 40.24 4.61
1719 2346 0.958822 AAACATTTGTCGCCCACCTC 59.041 50.000 0.00 0.00 0.00 3.85
1773 2423 1.587547 GAAATGTCCGAGATCTGCCC 58.412 55.000 0.00 0.00 0.00 5.36
1774 2424 0.179073 AAATGTCCGAGATCTGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
1790 2795 1.701545 CCCGCGCGCTCTAAATTCAA 61.702 55.000 30.48 0.00 0.00 2.69
1797 2959 4.666618 GCGCGCTCTAAATTCAATTCTAAC 59.333 41.667 26.67 0.00 0.00 2.34
2246 3421 4.796231 GACGGCGTCGCACCTCAT 62.796 66.667 25.42 0.00 40.63 2.90
3080 4273 2.158959 GGCGTCTCCGTTGTCATCG 61.159 63.158 0.00 0.00 36.15 3.84
3090 4289 1.803334 GTTGTCATCGCAGGTTGGTA 58.197 50.000 0.00 0.00 0.00 3.25
3095 4294 1.557371 TCATCGCAGGTTGGTAATGGA 59.443 47.619 0.00 0.00 0.00 3.41
3111 4310 4.402056 AATGGAAGGTATACCACTCACG 57.598 45.455 23.87 0.00 39.06 4.35
3126 4325 3.993736 CACTCACGGTCACAATCACATAA 59.006 43.478 0.00 0.00 0.00 1.90
3136 4335 7.243487 GGTCACAATCACATAAACATACACAG 58.757 38.462 0.00 0.00 0.00 3.66
3144 4344 5.629020 CACATAAACATACACAGGCAAACAC 59.371 40.000 0.00 0.00 0.00 3.32
3145 4345 3.347958 AAACATACACAGGCAAACACG 57.652 42.857 0.00 0.00 0.00 4.49
3146 4346 1.234821 ACATACACAGGCAAACACGG 58.765 50.000 0.00 0.00 0.00 4.94
3149 4349 4.326766 CACAGGCAAACACGGCGG 62.327 66.667 13.24 2.35 36.37 6.13
3156 4356 2.589442 AAACACGGCGGCGAGAAA 60.589 55.556 38.93 0.00 0.00 2.52
3157 4357 2.888998 AAACACGGCGGCGAGAAAC 61.889 57.895 38.93 0.00 0.00 2.78
3159 4359 3.118454 CACGGCGGCGAGAAACAT 61.118 61.111 38.93 10.96 0.00 2.71
3160 4360 2.358247 ACGGCGGCGAGAAACATT 60.358 55.556 38.93 10.08 0.00 2.71
3164 4380 0.800012 GGCGGCGAGAAACATTGTAA 59.200 50.000 12.98 0.00 0.00 2.41
3166 4382 2.610374 GGCGGCGAGAAACATTGTAATA 59.390 45.455 12.98 0.00 0.00 0.98
3181 4401 7.182060 ACATTGTAATACTGGAAAGGGTCATT 58.818 34.615 0.00 0.00 0.00 2.57
3182 4402 7.122650 ACATTGTAATACTGGAAAGGGTCATTG 59.877 37.037 0.00 0.00 0.00 2.82
3185 4405 5.520748 AATACTGGAAAGGGTCATTGTCT 57.479 39.130 0.00 0.00 0.00 3.41
3187 4407 2.711009 ACTGGAAAGGGTCATTGTCTGA 59.289 45.455 0.00 0.00 0.00 3.27
3188 4408 3.331889 ACTGGAAAGGGTCATTGTCTGAT 59.668 43.478 0.00 0.00 35.97 2.90
3189 4409 3.689347 TGGAAAGGGTCATTGTCTGATG 58.311 45.455 0.00 0.00 35.97 3.07
3190 4410 3.330405 TGGAAAGGGTCATTGTCTGATGA 59.670 43.478 0.00 0.00 35.97 2.92
3191 4411 4.202556 TGGAAAGGGTCATTGTCTGATGAA 60.203 41.667 0.00 0.00 37.75 2.57
3192 4412 4.156739 GGAAAGGGTCATTGTCTGATGAAC 59.843 45.833 0.00 0.00 41.89 3.18
3193 4413 4.371624 AAGGGTCATTGTCTGATGAACA 57.628 40.909 5.40 0.00 43.90 3.18
3194 4414 4.581309 AGGGTCATTGTCTGATGAACAT 57.419 40.909 5.40 0.00 43.90 2.71
3195 4415 5.698741 AGGGTCATTGTCTGATGAACATA 57.301 39.130 5.40 0.00 43.90 2.29
3196 4416 5.678583 AGGGTCATTGTCTGATGAACATAG 58.321 41.667 5.40 0.00 43.90 2.23
3197 4417 4.818546 GGGTCATTGTCTGATGAACATAGG 59.181 45.833 5.40 0.00 43.90 2.57
3198 4418 5.396772 GGGTCATTGTCTGATGAACATAGGA 60.397 44.000 5.40 0.00 43.90 2.94
3199 4419 5.757320 GGTCATTGTCTGATGAACATAGGAG 59.243 44.000 0.00 0.00 42.14 3.69
3200 4420 5.757320 GTCATTGTCTGATGAACATAGGAGG 59.243 44.000 0.00 0.00 37.75 4.30
3201 4421 3.827008 TGTCTGATGAACATAGGAGGC 57.173 47.619 0.00 0.00 0.00 4.70
3202 4422 3.378512 TGTCTGATGAACATAGGAGGCT 58.621 45.455 0.00 0.00 0.00 4.58
3203 4423 3.776969 TGTCTGATGAACATAGGAGGCTT 59.223 43.478 0.00 0.00 0.00 4.35
3204 4424 4.141846 TGTCTGATGAACATAGGAGGCTTC 60.142 45.833 0.00 0.00 0.00 3.86
3205 4425 3.068732 TCTGATGAACATAGGAGGCTTCG 59.931 47.826 0.00 0.00 0.00 3.79
3206 4426 3.031013 TGATGAACATAGGAGGCTTCGA 58.969 45.455 0.00 0.00 0.00 3.71
3231 4451 5.422214 TGGTTTGTTGGTTGGTTTTGTAT 57.578 34.783 0.00 0.00 0.00 2.29
3232 4452 5.805728 TGGTTTGTTGGTTGGTTTTGTATT 58.194 33.333 0.00 0.00 0.00 1.89
3256 4480 4.406456 ACTCATTTTGGTTGGATAGTGCA 58.594 39.130 0.00 0.00 0.00 4.57
3257 4481 4.460382 ACTCATTTTGGTTGGATAGTGCAG 59.540 41.667 0.00 0.00 0.00 4.41
3324 4551 2.420022 CAGTTCAAAATAGGCCACTCCG 59.580 50.000 5.01 0.00 40.77 4.63
3362 4589 5.860182 TCAGTATGAACCTTTAGTTTCGTCG 59.140 40.000 0.00 0.00 45.97 5.12
3367 4594 7.894376 ATGAACCTTTAGTTTCGTCGATTTA 57.106 32.000 0.00 0.00 39.40 1.40
3390 4617 4.806640 AAAAATGATACAGCCAACCCAG 57.193 40.909 0.00 0.00 0.00 4.45
3391 4618 3.456380 AAATGATACAGCCAACCCAGT 57.544 42.857 0.00 0.00 0.00 4.00
3392 4619 4.584638 AAATGATACAGCCAACCCAGTA 57.415 40.909 0.00 0.00 0.00 2.74
3393 4620 4.796110 AATGATACAGCCAACCCAGTAT 57.204 40.909 0.00 0.00 0.00 2.12
3395 4622 3.111484 TGATACAGCCAACCCAGTATGA 58.889 45.455 0.00 0.00 39.69 2.15
3396 4623 3.521531 TGATACAGCCAACCCAGTATGAA 59.478 43.478 0.00 0.00 39.69 2.57
3397 4624 2.200373 ACAGCCAACCCAGTATGAAC 57.800 50.000 0.00 0.00 39.69 3.18
3398 4625 1.271926 ACAGCCAACCCAGTATGAACC 60.272 52.381 0.00 0.00 39.69 3.62
3399 4626 1.004745 CAGCCAACCCAGTATGAACCT 59.995 52.381 0.00 0.00 39.69 3.50
3401 4628 2.110011 AGCCAACCCAGTATGAACCTTT 59.890 45.455 0.00 0.00 39.69 3.11
3402 4629 3.332485 AGCCAACCCAGTATGAACCTTTA 59.668 43.478 0.00 0.00 39.69 1.85
3403 4630 3.694566 GCCAACCCAGTATGAACCTTTAG 59.305 47.826 0.00 0.00 39.69 1.85
3404 4631 4.809691 GCCAACCCAGTATGAACCTTTAGT 60.810 45.833 0.00 0.00 39.69 2.24
3416 4961 1.418637 ACCTTTAGTTTCCACCGAGCA 59.581 47.619 0.00 0.00 0.00 4.26
3471 5016 5.046950 TCTGTTTTTGTTTGCTAAACCTGGT 60.047 36.000 0.00 0.00 40.67 4.00
3472 5017 4.932200 TGTTTTTGTTTGCTAAACCTGGTG 59.068 37.500 0.00 0.00 40.67 4.17
3473 5018 2.880963 TTGTTTGCTAAACCTGGTGC 57.119 45.000 0.00 0.00 40.67 5.01
3474 5019 1.036707 TGTTTGCTAAACCTGGTGCC 58.963 50.000 0.00 0.00 40.67 5.01
3475 5020 1.328279 GTTTGCTAAACCTGGTGCCT 58.672 50.000 0.00 0.00 35.35 4.75
3477 5022 1.178534 TTGCTAAACCTGGTGCCTGC 61.179 55.000 0.00 3.79 0.00 4.85
3478 5023 2.690778 GCTAAACCTGGTGCCTGCG 61.691 63.158 0.00 0.00 0.00 5.18
3479 5024 1.003839 CTAAACCTGGTGCCTGCGA 60.004 57.895 0.00 0.00 0.00 5.10
3480 5025 1.003839 TAAACCTGGTGCCTGCGAG 60.004 57.895 0.00 0.00 0.00 5.03
3481 5026 1.764571 TAAACCTGGTGCCTGCGAGT 61.765 55.000 0.00 0.00 0.00 4.18
3483 5028 4.007644 CCTGGTGCCTGCGAGTGA 62.008 66.667 0.00 0.00 0.00 3.41
3484 5029 2.267006 CTGGTGCCTGCGAGTGAT 59.733 61.111 0.00 0.00 0.00 3.06
3486 5031 0.108186 CTGGTGCCTGCGAGTGATTA 60.108 55.000 0.00 0.00 0.00 1.75
3488 5033 1.421410 GGTGCCTGCGAGTGATTACG 61.421 60.000 0.00 0.00 0.00 3.18
3495 5040 2.745728 CGAGTGATTACGCGGGTTT 58.254 52.632 11.50 0.00 44.74 3.27
3496 5041 0.368907 CGAGTGATTACGCGGGTTTG 59.631 55.000 11.50 0.00 44.74 2.93
3497 5042 0.725117 GAGTGATTACGCGGGTTTGG 59.275 55.000 11.50 0.00 0.00 3.28
3498 5043 1.135939 GTGATTACGCGGGTTTGGC 59.864 57.895 11.50 0.00 0.00 4.52
3499 5044 1.302591 TGATTACGCGGGTTTGGCA 60.303 52.632 11.50 1.72 0.00 4.92
3509 5056 0.465460 GGGTTTGGCACAGACAGTCA 60.465 55.000 2.66 0.00 46.01 3.41
3515 5062 0.322975 GGCACAGACAGTCAGACCAT 59.677 55.000 2.66 0.00 0.00 3.55
3527 5074 0.962356 CAGACCATCCACCTTGTGCC 60.962 60.000 0.00 0.00 31.34 5.01
3539 5086 4.497300 CACCTTGTGCCATCTTAATTTGG 58.503 43.478 0.48 0.48 36.03 3.28
3540 5087 3.515104 ACCTTGTGCCATCTTAATTTGGG 59.485 43.478 6.09 0.00 33.40 4.12
3541 5088 3.118665 CCTTGTGCCATCTTAATTTGGGG 60.119 47.826 6.09 0.00 33.40 4.96
3542 5089 2.465813 TGTGCCATCTTAATTTGGGGG 58.534 47.619 6.09 0.00 33.40 5.40
3543 5090 2.043664 TGTGCCATCTTAATTTGGGGGA 59.956 45.455 6.09 0.00 33.40 4.81
3544 5091 2.695147 GTGCCATCTTAATTTGGGGGAG 59.305 50.000 6.09 0.00 33.40 4.30
3545 5092 2.584965 TGCCATCTTAATTTGGGGGAGA 59.415 45.455 6.09 0.00 33.40 3.71
3546 5093 3.225940 GCCATCTTAATTTGGGGGAGAG 58.774 50.000 6.09 0.00 33.40 3.20
3547 5094 3.225940 CCATCTTAATTTGGGGGAGAGC 58.774 50.000 0.00 0.00 0.00 4.09
3548 5095 3.225940 CATCTTAATTTGGGGGAGAGCC 58.774 50.000 0.00 0.00 0.00 4.70
3654 5201 2.355115 CCCAGCCCAGGTTGGTAC 59.645 66.667 17.26 0.00 43.66 3.34
3655 5202 2.231380 CCCAGCCCAGGTTGGTACT 61.231 63.158 17.26 0.00 43.66 2.73
3656 5203 1.767692 CCAGCCCAGGTTGGTACTT 59.232 57.895 11.22 0.00 40.86 2.24
3657 5204 0.609131 CCAGCCCAGGTTGGTACTTG 60.609 60.000 11.22 0.00 40.86 3.16
3675 5222 3.777925 GTAGGCACACGCACGCAG 61.778 66.667 0.00 0.00 41.24 5.18
3702 5249 0.657368 GGCAAACGCGACAACAAGAG 60.657 55.000 15.93 0.00 0.00 2.85
3705 5252 2.602217 GCAAACGCGACAACAAGAGATT 60.602 45.455 15.93 0.00 0.00 2.40
3707 5254 2.148916 ACGCGACAACAAGAGATTCA 57.851 45.000 15.93 0.00 0.00 2.57
3708 5255 1.792949 ACGCGACAACAAGAGATTCAC 59.207 47.619 15.93 0.00 0.00 3.18
3710 5257 2.413112 CGCGACAACAAGAGATTCACAT 59.587 45.455 0.00 0.00 0.00 3.21
3734 5299 3.093057 ACAAAACAGCACAGGTTGGTTA 58.907 40.909 0.00 0.00 33.69 2.85
3760 5325 4.829064 TGTAACACTCATTTTGGACAGC 57.171 40.909 0.00 0.00 0.00 4.40
3984 6242 8.967218 GTTCATCAATTCGAAAAAGTTTCATGA 58.033 29.630 0.00 0.00 0.00 3.07
4032 6290 9.638239 TTAAAAGGTCTCATGCATGTAAAAATC 57.362 29.630 25.43 8.73 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.781834 CGGTATTGATTTGTTGTTGTATATGTT 57.218 29.630 0.00 0.00 0.00 2.71
13 14 8.952278 ACGGTATTGATTTGTTGTTGTATATGT 58.048 29.630 0.00 0.00 0.00 2.29
14 15 9.781834 AACGGTATTGATTTGTTGTTGTATATG 57.218 29.630 0.00 0.00 0.00 1.78
15 16 9.781834 CAACGGTATTGATTTGTTGTTGTATAT 57.218 29.630 0.00 0.00 36.17 0.86
16 17 8.237949 CCAACGGTATTGATTTGTTGTTGTATA 58.762 33.333 3.14 0.00 38.53 1.47
17 18 7.040340 TCCAACGGTATTGATTTGTTGTTGTAT 60.040 33.333 3.14 0.00 38.53 2.29
18 19 6.262496 TCCAACGGTATTGATTTGTTGTTGTA 59.738 34.615 3.14 0.00 38.53 2.41
19 20 5.067936 TCCAACGGTATTGATTTGTTGTTGT 59.932 36.000 3.14 0.00 38.53 3.32
20 21 5.524284 TCCAACGGTATTGATTTGTTGTTG 58.476 37.500 3.14 0.00 38.53 3.33
21 22 5.776173 TCCAACGGTATTGATTTGTTGTT 57.224 34.783 3.14 0.00 38.53 2.83
22 23 5.975693 ATCCAACGGTATTGATTTGTTGT 57.024 34.783 3.14 0.00 38.53 3.32
23 24 8.925161 ATAAATCCAACGGTATTGATTTGTTG 57.075 30.769 16.36 0.00 39.58 3.33
29 30 9.581289 TCCAATAATAAATCCAACGGTATTGAT 57.419 29.630 0.00 0.00 31.95 2.57
30 31 8.982091 TCCAATAATAAATCCAACGGTATTGA 57.018 30.769 0.00 0.00 31.95 2.57
31 32 9.624697 CATCCAATAATAAATCCAACGGTATTG 57.375 33.333 0.00 0.00 0.00 1.90
32 33 9.581289 TCATCCAATAATAAATCCAACGGTATT 57.419 29.630 0.00 0.00 0.00 1.89
33 34 9.581289 TTCATCCAATAATAAATCCAACGGTAT 57.419 29.630 0.00 0.00 0.00 2.73
34 35 8.982091 TTCATCCAATAATAAATCCAACGGTA 57.018 30.769 0.00 0.00 0.00 4.02
35 36 7.889873 TTCATCCAATAATAAATCCAACGGT 57.110 32.000 0.00 0.00 0.00 4.83
36 37 9.762933 AAATTCATCCAATAATAAATCCAACGG 57.237 29.630 0.00 0.00 0.00 4.44
112 113 9.883142 TCAAACTTCATAAAATTTTGACCAAGT 57.117 25.926 13.76 12.02 32.57 3.16
137 138 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
138 139 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
139 140 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
149 150 9.071221 CGCTTCTATTTACTCTGCATATTAGAG 57.929 37.037 10.74 10.74 45.59 2.43
150 151 8.793592 TCGCTTCTATTTACTCTGCATATTAGA 58.206 33.333 0.00 0.00 0.00 2.10
151 152 8.855279 GTCGCTTCTATTTACTCTGCATATTAG 58.145 37.037 0.00 0.00 0.00 1.73
152 153 7.537649 CGTCGCTTCTATTTACTCTGCATATTA 59.462 37.037 0.00 0.00 0.00 0.98
153 154 6.363626 CGTCGCTTCTATTTACTCTGCATATT 59.636 38.462 0.00 0.00 0.00 1.28
154 155 5.859114 CGTCGCTTCTATTTACTCTGCATAT 59.141 40.000 0.00 0.00 0.00 1.78
155 156 5.212934 CGTCGCTTCTATTTACTCTGCATA 58.787 41.667 0.00 0.00 0.00 3.14
156 157 4.045104 CGTCGCTTCTATTTACTCTGCAT 58.955 43.478 0.00 0.00 0.00 3.96
157 158 3.435566 CGTCGCTTCTATTTACTCTGCA 58.564 45.455 0.00 0.00 0.00 4.41
158 159 2.789893 CCGTCGCTTCTATTTACTCTGC 59.210 50.000 0.00 0.00 0.00 4.26
159 160 3.066342 TCCCGTCGCTTCTATTTACTCTG 59.934 47.826 0.00 0.00 0.00 3.35
160 161 3.285484 TCCCGTCGCTTCTATTTACTCT 58.715 45.455 0.00 0.00 0.00 3.24
161 162 3.066481 ACTCCCGTCGCTTCTATTTACTC 59.934 47.826 0.00 0.00 0.00 2.59
162 163 3.022406 ACTCCCGTCGCTTCTATTTACT 58.978 45.455 0.00 0.00 0.00 2.24
163 164 3.433513 ACTCCCGTCGCTTCTATTTAC 57.566 47.619 0.00 0.00 0.00 2.01
164 165 5.779529 AATACTCCCGTCGCTTCTATTTA 57.220 39.130 0.00 0.00 0.00 1.40
165 166 4.667519 AATACTCCCGTCGCTTCTATTT 57.332 40.909 0.00 0.00 0.00 1.40
166 167 4.581824 TGTAATACTCCCGTCGCTTCTATT 59.418 41.667 0.00 0.00 0.00 1.73
167 168 4.139786 TGTAATACTCCCGTCGCTTCTAT 58.860 43.478 0.00 0.00 0.00 1.98
168 169 3.544684 TGTAATACTCCCGTCGCTTCTA 58.455 45.455 0.00 0.00 0.00 2.10
169 170 2.372264 TGTAATACTCCCGTCGCTTCT 58.628 47.619 0.00 0.00 0.00 2.85
170 171 2.857592 TGTAATACTCCCGTCGCTTC 57.142 50.000 0.00 0.00 0.00 3.86
171 172 4.924305 TTATGTAATACTCCCGTCGCTT 57.076 40.909 0.00 0.00 0.00 4.68
172 173 6.561614 CATATTATGTAATACTCCCGTCGCT 58.438 40.000 0.00 0.00 31.57 4.93
173 174 5.231568 GCATATTATGTAATACTCCCGTCGC 59.768 44.000 5.60 0.00 31.57 5.19
174 175 6.561614 AGCATATTATGTAATACTCCCGTCG 58.438 40.000 5.60 0.00 31.57 5.12
175 176 9.298774 GTAAGCATATTATGTAATACTCCCGTC 57.701 37.037 5.60 0.00 31.57 4.79
176 177 8.809066 TGTAAGCATATTATGTAATACTCCCGT 58.191 33.333 5.60 0.00 31.57 5.28
177 178 9.817809 ATGTAAGCATATTATGTAATACTCCCG 57.182 33.333 5.60 0.00 32.73 5.14
226 227 9.955208 CATGTGATAGTTTTGCATGTTATATGT 57.045 29.630 0.00 0.00 34.10 2.29
227 228 9.955208 ACATGTGATAGTTTTGCATGTTATATG 57.045 29.630 0.00 0.00 45.09 1.78
228 229 9.955208 CACATGTGATAGTTTTGCATGTTATAT 57.045 29.630 21.64 0.00 45.09 0.86
229 230 8.404765 CCACATGTGATAGTTTTGCATGTTATA 58.595 33.333 27.46 0.00 45.09 0.98
230 231 7.093814 ACCACATGTGATAGTTTTGCATGTTAT 60.094 33.333 27.46 0.00 45.09 1.89
231 232 6.208402 ACCACATGTGATAGTTTTGCATGTTA 59.792 34.615 27.46 0.00 45.09 2.41
232 233 5.010922 ACCACATGTGATAGTTTTGCATGTT 59.989 36.000 27.46 0.00 45.09 2.71
234 235 5.063180 ACCACATGTGATAGTTTTGCATG 57.937 39.130 27.46 7.80 41.67 4.06
235 236 6.179756 TCTACCACATGTGATAGTTTTGCAT 58.820 36.000 27.46 0.00 0.00 3.96
236 237 5.555966 TCTACCACATGTGATAGTTTTGCA 58.444 37.500 27.46 3.64 0.00 4.08
237 238 6.683974 ATCTACCACATGTGATAGTTTTGC 57.316 37.500 27.46 0.00 0.00 3.68
245 246 8.686334 GGACAAATTTTATCTACCACATGTGAT 58.314 33.333 27.46 13.63 0.00 3.06
246 247 7.888021 AGGACAAATTTTATCTACCACATGTGA 59.112 33.333 27.46 7.46 0.00 3.58
247 248 8.055279 AGGACAAATTTTATCTACCACATGTG 57.945 34.615 19.31 19.31 0.00 3.21
248 249 9.920946 ATAGGACAAATTTTATCTACCACATGT 57.079 29.630 0.00 0.00 0.00 3.21
373 374 9.394477 GCTGAGTAGTTTAAAACTAAAACCATG 57.606 33.333 0.00 0.00 44.95 3.66
374 375 9.350951 AGCTGAGTAGTTTAAAACTAAAACCAT 57.649 29.630 0.00 0.00 44.95 3.55
414 415 6.599445 GGAGGGAGTACTACAGTCATACTAA 58.401 44.000 7.57 0.00 29.25 2.24
417 418 3.814283 CGGAGGGAGTACTACAGTCATAC 59.186 52.174 7.57 0.00 0.00 2.39
418 419 3.457380 ACGGAGGGAGTACTACAGTCATA 59.543 47.826 7.57 0.00 0.00 2.15
420 421 1.632409 ACGGAGGGAGTACTACAGTCA 59.368 52.381 7.57 0.00 0.00 3.41
421 422 2.416680 ACGGAGGGAGTACTACAGTC 57.583 55.000 7.57 2.72 0.00 3.51
422 423 2.720915 GAACGGAGGGAGTACTACAGT 58.279 52.381 7.57 0.00 0.00 3.55
423 424 1.669779 CGAACGGAGGGAGTACTACAG 59.330 57.143 7.57 0.00 0.00 2.74
424 425 1.679944 CCGAACGGAGGGAGTACTACA 60.680 57.143 7.57 0.00 37.50 2.74
425 426 1.020437 CCGAACGGAGGGAGTACTAC 58.980 60.000 7.53 0.00 37.50 2.73
426 427 0.911769 TCCGAACGGAGGGAGTACTA 59.088 55.000 12.04 0.00 39.76 1.82
430 431 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
431 432 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
432 433 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
433 434 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
434 435 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
435 436 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
436 437 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
437 438 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
438 439 4.406069 TCTACGACAAGTAATTCCGAACG 58.594 43.478 0.00 0.00 34.45 3.95
439 440 6.695292 TTTCTACGACAAGTAATTCCGAAC 57.305 37.500 0.00 0.00 34.45 3.95
440 441 8.461222 TCTATTTCTACGACAAGTAATTCCGAA 58.539 33.333 0.00 0.00 34.45 4.30
441 442 7.988737 TCTATTTCTACGACAAGTAATTCCGA 58.011 34.615 0.00 0.00 34.45 4.55
442 443 8.691727 CATCTATTTCTACGACAAGTAATTCCG 58.308 37.037 0.00 0.00 34.45 4.30
443 444 9.530633 ACATCTATTTCTACGACAAGTAATTCC 57.469 33.333 0.00 0.00 34.45 3.01
480 481 9.822185 GGAAATGGATGCATCTAAAACTAAAAT 57.178 29.630 25.28 0.00 0.00 1.82
481 482 7.973388 CGGAAATGGATGCATCTAAAACTAAAA 59.027 33.333 25.28 0.70 0.00 1.52
482 483 7.338196 TCGGAAATGGATGCATCTAAAACTAAA 59.662 33.333 25.28 2.87 0.00 1.85
483 484 6.826231 TCGGAAATGGATGCATCTAAAACTAA 59.174 34.615 25.28 4.30 0.00 2.24
484 485 6.353323 TCGGAAATGGATGCATCTAAAACTA 58.647 36.000 25.28 3.78 0.00 2.24
485 486 5.192927 TCGGAAATGGATGCATCTAAAACT 58.807 37.500 25.28 2.21 0.00 2.66
486 487 5.296780 TCTCGGAAATGGATGCATCTAAAAC 59.703 40.000 25.28 14.09 0.00 2.43
487 488 5.296780 GTCTCGGAAATGGATGCATCTAAAA 59.703 40.000 25.28 10.04 0.00 1.52
488 489 4.816385 GTCTCGGAAATGGATGCATCTAAA 59.184 41.667 25.28 12.43 0.00 1.85
489 490 4.141733 TGTCTCGGAAATGGATGCATCTAA 60.142 41.667 25.28 14.87 0.00 2.10
490 491 3.387699 TGTCTCGGAAATGGATGCATCTA 59.612 43.478 25.28 20.79 0.00 1.98
491 492 2.171237 TGTCTCGGAAATGGATGCATCT 59.829 45.455 25.28 6.25 0.00 2.90
492 493 2.564771 TGTCTCGGAAATGGATGCATC 58.435 47.619 18.81 18.81 0.00 3.91
493 494 2.715749 TGTCTCGGAAATGGATGCAT 57.284 45.000 0.00 0.00 0.00 3.96
494 495 2.290260 ACTTGTCTCGGAAATGGATGCA 60.290 45.455 0.00 0.00 0.00 3.96
495 496 2.359900 ACTTGTCTCGGAAATGGATGC 58.640 47.619 0.00 0.00 0.00 3.91
496 497 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
497 498 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
498 499 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
499 500 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
500 501 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
501 502 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
502 503 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
503 504 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
504 505 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
505 506 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
506 507 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
507 508 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
508 509 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
509 510 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
510 511 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
511 512 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
512 513 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
513 514 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
514 515 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
515 516 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
516 517 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
517 518 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
518 519 1.308069 CGTACTCCCTCCGTTCGGAA 61.308 60.000 14.79 0.04 33.41 4.30
519 520 1.746615 CGTACTCCCTCCGTTCGGA 60.747 63.158 13.34 13.34 0.00 4.55
520 521 1.746615 TCGTACTCCCTCCGTTCGG 60.747 63.158 4.74 4.74 0.00 4.30
521 522 1.300971 TGTCGTACTCCCTCCGTTCG 61.301 60.000 0.00 0.00 0.00 3.95
522 523 1.101331 ATGTCGTACTCCCTCCGTTC 58.899 55.000 0.00 0.00 0.00 3.95
523 524 1.553706 AATGTCGTACTCCCTCCGTT 58.446 50.000 0.00 0.00 0.00 4.44
524 525 2.295885 CTAATGTCGTACTCCCTCCGT 58.704 52.381 0.00 0.00 0.00 4.69
525 526 2.295885 ACTAATGTCGTACTCCCTCCG 58.704 52.381 0.00 0.00 0.00 4.63
526 527 4.459330 ACTACTAATGTCGTACTCCCTCC 58.541 47.826 0.00 0.00 0.00 4.30
527 528 5.176590 CGTACTACTAATGTCGTACTCCCTC 59.823 48.000 8.57 0.00 40.80 4.30
528 529 5.053145 CGTACTACTAATGTCGTACTCCCT 58.947 45.833 8.57 0.00 40.80 4.20
529 530 5.050490 TCGTACTACTAATGTCGTACTCCC 58.950 45.833 8.57 0.00 40.80 4.30
530 531 5.751028 ACTCGTACTACTAATGTCGTACTCC 59.249 44.000 8.57 0.00 40.80 3.85
531 532 6.473778 TCACTCGTACTACTAATGTCGTACTC 59.526 42.308 8.57 0.00 40.80 2.59
532 533 6.333416 TCACTCGTACTACTAATGTCGTACT 58.667 40.000 8.57 0.00 40.80 2.73
533 534 6.575083 TCACTCGTACTACTAATGTCGTAC 57.425 41.667 0.00 0.00 40.08 3.67
534 535 7.035612 TCTTCACTCGTACTACTAATGTCGTA 58.964 38.462 0.00 0.00 0.00 3.43
535 536 5.871524 TCTTCACTCGTACTACTAATGTCGT 59.128 40.000 0.00 0.00 0.00 4.34
536 537 6.341880 TCTTCACTCGTACTACTAATGTCG 57.658 41.667 0.00 0.00 0.00 4.35
537 538 8.235905 ACTTTCTTCACTCGTACTACTAATGTC 58.764 37.037 0.00 0.00 0.00 3.06
538 539 8.108551 ACTTTCTTCACTCGTACTACTAATGT 57.891 34.615 0.00 0.00 0.00 2.71
542 543 9.440773 TCATTACTTTCTTCACTCGTACTACTA 57.559 33.333 0.00 0.00 0.00 1.82
543 544 8.332996 TCATTACTTTCTTCACTCGTACTACT 57.667 34.615 0.00 0.00 0.00 2.57
544 545 7.218583 GCTCATTACTTTCTTCACTCGTACTAC 59.781 40.741 0.00 0.00 0.00 2.73
545 546 7.094506 TGCTCATTACTTTCTTCACTCGTACTA 60.095 37.037 0.00 0.00 0.00 1.82
546 547 6.094061 GCTCATTACTTTCTTCACTCGTACT 58.906 40.000 0.00 0.00 0.00 2.73
547 548 5.862323 TGCTCATTACTTTCTTCACTCGTAC 59.138 40.000 0.00 0.00 0.00 3.67
548 549 5.862323 GTGCTCATTACTTTCTTCACTCGTA 59.138 40.000 0.00 0.00 0.00 3.43
549 550 4.686554 GTGCTCATTACTTTCTTCACTCGT 59.313 41.667 0.00 0.00 0.00 4.18
550 551 4.686091 TGTGCTCATTACTTTCTTCACTCG 59.314 41.667 0.00 0.00 0.00 4.18
551 552 6.541086 CATGTGCTCATTACTTTCTTCACTC 58.459 40.000 0.00 0.00 31.15 3.51
552 553 5.106396 GCATGTGCTCATTACTTTCTTCACT 60.106 40.000 0.00 0.00 38.21 3.41
553 554 5.091431 GCATGTGCTCATTACTTTCTTCAC 58.909 41.667 0.00 0.00 38.21 3.18
554 555 4.761227 TGCATGTGCTCATTACTTTCTTCA 59.239 37.500 6.55 0.00 42.66 3.02
555 556 5.091431 GTGCATGTGCTCATTACTTTCTTC 58.909 41.667 6.55 0.00 42.66 2.87
556 557 4.763793 AGTGCATGTGCTCATTACTTTCTT 59.236 37.500 6.55 0.00 42.66 2.52
557 558 4.330250 AGTGCATGTGCTCATTACTTTCT 58.670 39.130 6.55 0.00 42.66 2.52
558 559 4.154737 TGAGTGCATGTGCTCATTACTTTC 59.845 41.667 14.45 6.24 42.66 2.62
559 560 4.074259 TGAGTGCATGTGCTCATTACTTT 58.926 39.130 14.45 0.00 42.66 2.66
560 561 3.438087 GTGAGTGCATGTGCTCATTACTT 59.562 43.478 19.14 2.67 42.72 2.24
561 562 3.005554 GTGAGTGCATGTGCTCATTACT 58.994 45.455 19.14 12.68 42.72 2.24
562 563 3.005554 AGTGAGTGCATGTGCTCATTAC 58.994 45.455 19.14 10.33 42.72 1.89
563 564 3.004862 CAGTGAGTGCATGTGCTCATTA 58.995 45.455 19.14 0.71 42.72 1.90
564 565 1.810755 CAGTGAGTGCATGTGCTCATT 59.189 47.619 19.14 14.38 42.72 2.57
565 566 1.271217 ACAGTGAGTGCATGTGCTCAT 60.271 47.619 19.14 0.00 42.72 2.90
566 567 0.107268 ACAGTGAGTGCATGTGCTCA 59.893 50.000 14.45 14.45 42.66 4.26
567 568 1.233019 AACAGTGAGTGCATGTGCTC 58.767 50.000 6.55 10.43 42.66 4.26
651 659 1.268283 GGTGACTTGGGAGGGAGAGG 61.268 65.000 0.00 0.00 0.00 3.69
665 673 1.079750 GCAGGGAGACGAAGGTGAC 60.080 63.158 0.00 0.00 0.00 3.67
667 675 2.266055 GGCAGGGAGACGAAGGTG 59.734 66.667 0.00 0.00 0.00 4.00
723 745 1.577468 TCGCTGCGTGAAAGAGAAAA 58.423 45.000 22.48 0.00 0.00 2.29
739 761 4.135493 GCTGAGTTCGGCGTTCGC 62.135 66.667 6.85 8.75 38.61 4.70
748 770 1.600916 GGTGGGTGTGGCTGAGTTC 60.601 63.158 0.00 0.00 0.00 3.01
840 864 2.855599 TGAGAGAGAAGATGAGGAGGGA 59.144 50.000 0.00 0.00 0.00 4.20
855 883 1.679305 GCCTGGACTCCGTGAGAGA 60.679 63.158 0.00 0.00 46.50 3.10
867 895 4.741239 GGAGAGGGGTGGCCTGGA 62.741 72.222 3.32 0.00 0.00 3.86
872 900 4.423209 AGGGAGGAGAGGGGTGGC 62.423 72.222 0.00 0.00 0.00 5.01
876 904 4.150454 AGCGAGGGAGGAGAGGGG 62.150 72.222 0.00 0.00 0.00 4.79
880 908 1.077357 GAGACAGCGAGGGAGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
881 909 2.124693 GGAGACAGCGAGGGAGGAG 61.125 68.421 0.00 0.00 0.00 3.69
882 910 2.043852 GGAGACAGCGAGGGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
883 911 1.261238 AAAGGAGACAGCGAGGGAGG 61.261 60.000 0.00 0.00 0.00 4.30
885 913 0.251832 AGAAAGGAGACAGCGAGGGA 60.252 55.000 0.00 0.00 0.00 4.20
887 915 2.028567 AGAAAGAAAGGAGACAGCGAGG 60.029 50.000 0.00 0.00 0.00 4.63
891 919 4.000325 GAGGAAGAAAGAAAGGAGACAGC 59.000 47.826 0.00 0.00 0.00 4.40
894 922 4.000325 GCAGAGGAAGAAAGAAAGGAGAC 59.000 47.826 0.00 0.00 0.00 3.36
899 927 2.414825 GAGCGCAGAGGAAGAAAGAAAG 59.585 50.000 11.47 0.00 0.00 2.62
900 928 2.417719 GAGCGCAGAGGAAGAAAGAAA 58.582 47.619 11.47 0.00 0.00 2.52
902 930 0.109086 CGAGCGCAGAGGAAGAAAGA 60.109 55.000 11.47 0.00 0.00 2.52
903 931 1.691215 GCGAGCGCAGAGGAAGAAAG 61.691 60.000 11.47 0.00 41.49 2.62
904 932 1.738099 GCGAGCGCAGAGGAAGAAA 60.738 57.895 11.47 0.00 41.49 2.52
906 934 4.482684 CGCGAGCGCAGAGGAAGA 62.483 66.667 11.47 0.00 42.06 2.87
990 1023 4.116878 GAGTTCATCTCGGCCTGC 57.883 61.111 0.00 0.00 33.25 4.85
1201 1252 0.882474 GAGTAGTGAGTGGAGCACGT 59.118 55.000 0.00 0.00 41.04 4.49
1228 1311 3.160269 CAGGGAGGGATTAATGGAATGC 58.840 50.000 0.00 0.00 35.21 3.56
1238 1321 3.863086 ACGATTAGATCAGGGAGGGATT 58.137 45.455 0.00 0.00 0.00 3.01
1256 1355 5.106712 GGATTCAATTCAACAGCAGTAACGA 60.107 40.000 0.00 0.00 0.00 3.85
1257 1356 5.088739 GGATTCAATTCAACAGCAGTAACG 58.911 41.667 0.00 0.00 0.00 3.18
1258 1357 5.088739 CGGATTCAATTCAACAGCAGTAAC 58.911 41.667 0.00 0.00 0.00 2.50
1577 1689 3.184581 CGACGAAAAAGGAGGTGAGAAAG 59.815 47.826 0.00 0.00 0.00 2.62
1596 1717 1.197036 GCTTTCCAGTTAAGGTGCGAC 59.803 52.381 0.00 0.00 0.00 5.19
1647 1786 1.860484 GCAAGAAGTGGCCTGCTGAC 61.860 60.000 3.32 0.00 0.00 3.51
1648 1787 1.601759 GCAAGAAGTGGCCTGCTGA 60.602 57.895 3.32 0.00 0.00 4.26
1649 1788 1.900016 TGCAAGAAGTGGCCTGCTG 60.900 57.895 12.97 0.00 0.00 4.41
1650 1789 1.900498 GTGCAAGAAGTGGCCTGCT 60.900 57.895 12.97 4.40 0.00 4.24
1651 1790 2.195567 TGTGCAAGAAGTGGCCTGC 61.196 57.895 3.32 4.61 0.00 4.85
1657 1796 4.801891 AGCATTAATGTGTGCAAGAAGTG 58.198 39.130 16.61 0.00 43.63 3.16
1717 2344 4.326205 CAAATTAACTGCGTCGACATGAG 58.674 43.478 17.16 9.92 0.00 2.90
1719 2346 2.840176 GCAAATTAACTGCGTCGACATG 59.160 45.455 17.16 7.11 0.00 3.21
1743 2373 5.419542 TCTCGGACATTTCCAACTAATCTG 58.580 41.667 0.00 0.00 43.00 2.90
1773 2423 2.029815 GAATTGAATTTAGAGCGCGCG 58.970 47.619 28.44 28.44 0.00 6.86
1774 2424 3.325230 AGAATTGAATTTAGAGCGCGC 57.675 42.857 26.66 26.66 0.00 6.86
1790 2795 4.175787 AGAAACAGAGTCGCGTTAGAAT 57.824 40.909 5.77 0.00 0.00 2.40
1797 2959 0.508641 CACCAAGAAACAGAGTCGCG 59.491 55.000 0.00 0.00 0.00 5.87
3080 4273 2.215942 ACCTTCCATTACCAACCTGC 57.784 50.000 0.00 0.00 0.00 4.85
3090 4289 3.134081 CCGTGAGTGGTATACCTTCCATT 59.866 47.826 22.41 0.00 36.09 3.16
3095 4294 2.494870 GTGACCGTGAGTGGTATACCTT 59.505 50.000 22.41 10.98 44.01 3.50
3111 4310 7.139896 TGTGTATGTTTATGTGATTGTGACC 57.860 36.000 0.00 0.00 0.00 4.02
3126 4325 1.606668 CCGTGTTTGCCTGTGTATGTT 59.393 47.619 0.00 0.00 0.00 2.71
3144 4344 1.355796 TACAATGTTTCTCGCCGCCG 61.356 55.000 0.00 0.00 0.00 6.46
3145 4345 0.800012 TTACAATGTTTCTCGCCGCC 59.200 50.000 0.00 0.00 0.00 6.13
3146 4346 2.825086 ATTACAATGTTTCTCGCCGC 57.175 45.000 0.00 0.00 0.00 6.53
3149 4349 6.417191 TTCCAGTATTACAATGTTTCTCGC 57.583 37.500 0.00 0.00 0.00 5.03
3153 4353 7.175990 TGACCCTTTCCAGTATTACAATGTTTC 59.824 37.037 0.00 0.00 0.00 2.78
3156 4356 6.134535 TGACCCTTTCCAGTATTACAATGT 57.865 37.500 0.00 0.00 0.00 2.71
3157 4357 7.122650 ACAATGACCCTTTCCAGTATTACAATG 59.877 37.037 0.00 0.00 0.00 2.82
3159 4359 6.548321 ACAATGACCCTTTCCAGTATTACAA 58.452 36.000 0.00 0.00 0.00 2.41
3160 4360 6.012858 AGACAATGACCCTTTCCAGTATTACA 60.013 38.462 0.00 0.00 0.00 2.41
3164 4380 4.536090 TCAGACAATGACCCTTTCCAGTAT 59.464 41.667 0.00 0.00 31.12 2.12
3166 4382 2.711009 TCAGACAATGACCCTTTCCAGT 59.289 45.455 0.00 0.00 31.12 4.00
3181 4401 3.378512 AGCCTCCTATGTTCATCAGACA 58.621 45.455 0.00 0.00 0.00 3.41
3182 4402 4.376146 GAAGCCTCCTATGTTCATCAGAC 58.624 47.826 0.00 0.00 0.00 3.51
3185 4405 3.031013 TCGAAGCCTCCTATGTTCATCA 58.969 45.455 0.00 0.00 0.00 3.07
3187 4407 4.696479 ATTCGAAGCCTCCTATGTTCAT 57.304 40.909 3.35 0.00 0.00 2.57
3188 4408 4.191544 CAATTCGAAGCCTCCTATGTTCA 58.808 43.478 3.35 0.00 0.00 3.18
3189 4409 3.561725 CCAATTCGAAGCCTCCTATGTTC 59.438 47.826 3.35 0.00 0.00 3.18
3190 4410 3.054361 ACCAATTCGAAGCCTCCTATGTT 60.054 43.478 3.35 0.00 0.00 2.71
3191 4411 2.505819 ACCAATTCGAAGCCTCCTATGT 59.494 45.455 3.35 0.00 0.00 2.29
3192 4412 3.199880 ACCAATTCGAAGCCTCCTATG 57.800 47.619 3.35 0.00 0.00 2.23
3193 4413 3.933861 AACCAATTCGAAGCCTCCTAT 57.066 42.857 3.35 0.00 0.00 2.57
3194 4414 3.244770 ACAAACCAATTCGAAGCCTCCTA 60.245 43.478 3.35 0.00 0.00 2.94
3195 4415 2.162681 CAAACCAATTCGAAGCCTCCT 58.837 47.619 3.35 0.00 0.00 3.69
3196 4416 1.886542 ACAAACCAATTCGAAGCCTCC 59.113 47.619 3.35 0.00 0.00 4.30
3197 4417 3.308530 CAACAAACCAATTCGAAGCCTC 58.691 45.455 3.35 0.00 0.00 4.70
3198 4418 2.035832 CCAACAAACCAATTCGAAGCCT 59.964 45.455 3.35 0.00 0.00 4.58
3199 4419 2.223947 ACCAACAAACCAATTCGAAGCC 60.224 45.455 3.35 0.00 0.00 4.35
3200 4420 3.092334 ACCAACAAACCAATTCGAAGC 57.908 42.857 3.35 0.00 0.00 3.86
3201 4421 3.801594 CCAACCAACAAACCAATTCGAAG 59.198 43.478 3.35 0.00 0.00 3.79
3202 4422 3.195825 ACCAACCAACAAACCAATTCGAA 59.804 39.130 0.00 0.00 0.00 3.71
3203 4423 2.761208 ACCAACCAACAAACCAATTCGA 59.239 40.909 0.00 0.00 0.00 3.71
3204 4424 3.172229 ACCAACCAACAAACCAATTCG 57.828 42.857 0.00 0.00 0.00 3.34
3205 4425 5.182190 ACAAAACCAACCAACAAACCAATTC 59.818 36.000 0.00 0.00 0.00 2.17
3206 4426 5.073428 ACAAAACCAACCAACAAACCAATT 58.927 33.333 0.00 0.00 0.00 2.32
3231 4451 6.491745 TGCACTATCCAACCAAAATGAGTAAA 59.508 34.615 0.00 0.00 0.00 2.01
3232 4452 6.007076 TGCACTATCCAACCAAAATGAGTAA 58.993 36.000 0.00 0.00 0.00 2.24
3256 4480 0.877071 CATTCCTCTTGCGTGCAACT 59.123 50.000 2.58 0.00 31.75 3.16
3257 4481 0.593128 ACATTCCTCTTGCGTGCAAC 59.407 50.000 2.58 0.00 0.00 4.17
3294 4518 4.261994 GCCTATTTTGAACTGCAGGTGAAA 60.262 41.667 19.93 16.24 0.00 2.69
3324 4551 2.010145 TACTGAAATCACAGCGAGCC 57.990 50.000 0.00 0.00 41.06 4.70
3327 4554 3.932710 GGTTCATACTGAAATCACAGCGA 59.067 43.478 0.00 0.00 38.22 4.93
3330 4557 8.553459 ACTAAAGGTTCATACTGAAATCACAG 57.447 34.615 0.00 0.00 38.22 3.66
3385 4612 5.073965 TGGAAACTAAAGGTTCATACTGGGT 59.926 40.000 9.82 0.00 37.12 4.51
3388 4615 5.121768 CGGTGGAAACTAAAGGTTCATACTG 59.878 44.000 9.82 8.83 37.12 2.74
3390 4617 5.240121 TCGGTGGAAACTAAAGGTTCATAC 58.760 41.667 9.82 7.70 37.12 2.39
3391 4618 5.484715 CTCGGTGGAAACTAAAGGTTCATA 58.515 41.667 9.82 0.00 37.12 2.15
3392 4619 4.324267 CTCGGTGGAAACTAAAGGTTCAT 58.676 43.478 9.82 0.00 37.12 2.57
3393 4620 3.735591 CTCGGTGGAAACTAAAGGTTCA 58.264 45.455 9.82 0.00 37.12 3.18
3395 4622 2.158726 TGCTCGGTGGAAACTAAAGGTT 60.159 45.455 0.00 0.00 40.28 3.50
3396 4623 1.418637 TGCTCGGTGGAAACTAAAGGT 59.581 47.619 0.00 0.00 0.00 3.50
3397 4624 2.076863 CTGCTCGGTGGAAACTAAAGG 58.923 52.381 0.00 0.00 0.00 3.11
3398 4625 2.076863 CCTGCTCGGTGGAAACTAAAG 58.923 52.381 0.00 0.00 0.00 1.85
3399 4626 1.695242 TCCTGCTCGGTGGAAACTAAA 59.305 47.619 0.00 0.00 0.00 1.85
3401 4628 1.344065 TTCCTGCTCGGTGGAAACTA 58.656 50.000 0.00 0.00 39.15 2.24
3402 4629 0.472471 TTTCCTGCTCGGTGGAAACT 59.528 50.000 3.40 0.00 44.49 2.66
3403 4630 3.015516 TTTCCTGCTCGGTGGAAAC 57.984 52.632 3.40 0.00 44.49 2.78
3416 4961 2.095059 GTGCGCTGTGAAATGATTTCCT 60.095 45.455 14.73 0.00 38.90 3.36
3471 5016 4.494811 CGTAATCACTCGCAGGCA 57.505 55.556 0.00 0.00 0.00 4.75
3477 5022 0.368907 CAAACCCGCGTAATCACTCG 59.631 55.000 4.92 0.00 32.70 4.18
3478 5023 0.725117 CCAAACCCGCGTAATCACTC 59.275 55.000 4.92 0.00 0.00 3.51
3479 5024 1.303091 GCCAAACCCGCGTAATCACT 61.303 55.000 4.92 0.00 0.00 3.41
3480 5025 1.135939 GCCAAACCCGCGTAATCAC 59.864 57.895 4.92 0.00 0.00 3.06
3481 5026 1.302591 TGCCAAACCCGCGTAATCA 60.303 52.632 4.92 0.00 0.00 2.57
3483 5028 1.582610 CTGTGCCAAACCCGCGTAAT 61.583 55.000 4.92 0.00 0.00 1.89
3484 5029 2.203167 TGTGCCAAACCCGCGTAA 60.203 55.556 4.92 0.00 0.00 3.18
3486 5031 4.555709 TCTGTGCCAAACCCGCGT 62.556 61.111 4.92 0.00 0.00 6.01
3488 5033 2.904866 TGTCTGTGCCAAACCCGC 60.905 61.111 0.00 0.00 0.00 6.13
3490 5035 0.465460 TGACTGTCTGTGCCAAACCC 60.465 55.000 9.51 0.00 0.00 4.11
3491 5036 0.947244 CTGACTGTCTGTGCCAAACC 59.053 55.000 9.51 0.00 0.00 3.27
3492 5037 1.599542 GTCTGACTGTCTGTGCCAAAC 59.400 52.381 9.51 0.00 0.00 2.93
3495 5040 1.048160 TGGTCTGACTGTCTGTGCCA 61.048 55.000 20.10 20.10 0.00 4.92
3496 5041 0.322975 ATGGTCTGACTGTCTGTGCC 59.677 55.000 9.51 14.30 0.00 5.01
3497 5042 1.674221 GGATGGTCTGACTGTCTGTGC 60.674 57.143 9.51 6.45 0.00 4.57
3498 5043 1.620323 TGGATGGTCTGACTGTCTGTG 59.380 52.381 9.51 0.02 0.00 3.66
3499 5044 1.620819 GTGGATGGTCTGACTGTCTGT 59.379 52.381 9.51 0.00 0.00 3.41
3509 5056 1.380302 GGCACAAGGTGGATGGTCT 59.620 57.895 0.00 0.00 33.64 3.85
3527 5074 3.225940 GGCTCTCCCCCAAATTAAGATG 58.774 50.000 0.00 0.00 0.00 2.90
3541 5088 4.972875 CCATGAAGTGGGCTCTCC 57.027 61.111 0.00 0.00 44.79 3.71
3549 5096 0.652592 GCGATTCGACCCATGAAGTG 59.347 55.000 10.88 0.00 0.00 3.16
3550 5097 0.537188 AGCGATTCGACCCATGAAGT 59.463 50.000 10.88 0.00 0.00 3.01
3551 5098 1.656652 AAGCGATTCGACCCATGAAG 58.343 50.000 10.88 0.00 0.00 3.02
3552 5099 2.006888 GAAAGCGATTCGACCCATGAA 58.993 47.619 10.88 0.00 0.00 2.57
3553 5100 1.651987 GAAAGCGATTCGACCCATGA 58.348 50.000 10.88 0.00 0.00 3.07
3619 5166 1.227674 GGATGGAGACGATGGTGCC 60.228 63.158 0.00 0.00 0.00 5.01
3624 5171 1.070445 GCTGGGGATGGAGACGATG 59.930 63.158 0.00 0.00 0.00 3.84
3654 5201 2.667318 CGTGCGTGTGCCTACCAAG 61.667 63.158 0.00 0.00 41.78 3.61
3655 5202 2.663520 CGTGCGTGTGCCTACCAA 60.664 61.111 0.00 0.00 41.78 3.67
3658 5205 3.777925 CTGCGTGCGTGTGCCTAC 61.778 66.667 0.00 0.00 41.78 3.18
3659 5206 3.984749 TCTGCGTGCGTGTGCCTA 61.985 61.111 0.00 0.00 41.78 3.93
3702 5249 5.042593 TGTGCTGTTTTGTTCATGTGAATC 58.957 37.500 0.00 0.00 36.33 2.52
3705 5252 3.181488 CCTGTGCTGTTTTGTTCATGTGA 60.181 43.478 0.00 0.00 0.00 3.58
3707 5254 2.760092 ACCTGTGCTGTTTTGTTCATGT 59.240 40.909 0.00 0.00 0.00 3.21
3708 5255 3.441496 ACCTGTGCTGTTTTGTTCATG 57.559 42.857 0.00 0.00 0.00 3.07
3710 5257 2.094286 CCAACCTGTGCTGTTTTGTTCA 60.094 45.455 0.00 0.00 0.00 3.18
3734 5299 7.164230 TGTCCAAAATGAGTGTTACAAAACT 57.836 32.000 0.00 0.00 36.51 2.66
3774 5339 8.282592 TGAAGAACAAAGAACATACATTCTTCG 58.717 33.333 15.31 0.00 46.02 3.79
3956 6214 8.870160 TGAAACTTTTTCGAATTGATGAACAT 57.130 26.923 0.00 0.00 0.00 2.71
4013 6271 6.261118 GTGGAGATTTTTACATGCATGAGAC 58.739 40.000 32.75 14.96 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.