Multiple sequence alignment - TraesCS2B01G506000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G506000 chr2B 100.000 2723 0 0 1 2723 701358811 701361533 0.000000e+00 5029
1 TraesCS2B01G506000 chr2B 79.307 1184 187 34 537 1688 724935559 724934402 0.000000e+00 776
2 TraesCS2B01G506000 chr2B 96.694 242 8 0 1891 2132 589732801 589732560 1.170000e-108 403
3 TraesCS2B01G506000 chr2B 96.680 241 8 0 1891 2131 35397981 35398221 4.220000e-108 401
4 TraesCS2B01G506000 chr2B 96.680 241 8 0 1891 2131 517503702 517503462 4.220000e-108 401
5 TraesCS2B01G506000 chr2D 91.238 1575 100 14 148 1715 580455394 580456937 0.000000e+00 2109
6 TraesCS2B01G506000 chr2D 87.116 846 90 8 109 943 580425204 580426041 0.000000e+00 941
7 TraesCS2B01G506000 chr2D 79.746 1180 181 36 537 1684 596213015 596211862 0.000000e+00 802
8 TraesCS2B01G506000 chr2A 91.512 1567 79 17 148 1695 718264602 718266133 0.000000e+00 2108
9 TraesCS2B01G506000 chr2A 85.782 844 98 8 109 941 718261793 718262625 0.000000e+00 874
10 TraesCS2B01G506000 chr2A 80.085 1180 177 39 537 1684 729871243 729870090 0.000000e+00 824
11 TraesCS2B01G506000 chr5A 86.435 575 59 12 2128 2690 446691822 446692389 1.790000e-171 612
12 TraesCS2B01G506000 chr5A 79.567 323 54 9 1059 1378 355855058 355855371 1.270000e-53 220
13 TraesCS2B01G506000 chr5A 88.696 115 10 1 1 112 52882377 52882491 1.310000e-28 137
14 TraesCS2B01G506000 chr7B 86.768 461 35 12 2183 2635 6862246 6861804 8.760000e-135 490
15 TraesCS2B01G506000 chr7B 96.341 246 9 0 1891 2136 372681435 372681190 3.260000e-109 405
16 TraesCS2B01G506000 chr7B 95.219 251 11 1 1882 2131 154615943 154616193 1.960000e-106 396
17 TraesCS2B01G506000 chr7D 82.218 568 70 16 2128 2673 268845401 268844843 6.870000e-126 460
18 TraesCS2B01G506000 chr7D 93.043 115 5 1 1 112 5642672 5642558 6.030000e-37 165
19 TraesCS2B01G506000 chr7A 82.149 577 59 21 2128 2690 226725080 226724534 3.200000e-124 455
20 TraesCS2B01G506000 chr7A 89.565 115 9 1 1 112 722378039 722378153 2.830000e-30 143
21 TraesCS2B01G506000 chr7A 84.348 115 14 2 1 112 250323872 250323759 2.870000e-20 110
22 TraesCS2B01G506000 chr3B 96.016 251 9 1 1882 2131 612112375 612112625 9.080000e-110 407
23 TraesCS2B01G506000 chr6B 96.694 242 8 0 1891 2132 556846152 556846393 1.170000e-108 403
24 TraesCS2B01G506000 chr6B 96.311 244 9 0 1891 2134 684933381 684933138 4.220000e-108 401
25 TraesCS2B01G506000 chr5B 96.296 243 9 0 1891 2133 446205623 446205381 1.520000e-107 399
26 TraesCS2B01G506000 chr6D 83.898 354 33 11 2200 2538 232746535 232746191 1.570000e-82 316
27 TraesCS2B01G506000 chr6D 90.345 145 9 3 2540 2679 232745872 232745728 4.630000e-43 185
28 TraesCS2B01G506000 chr5D 77.000 400 76 12 984 1378 268486233 268486621 5.910000e-52 215
29 TraesCS2B01G506000 chr4D 93.913 115 4 1 1 112 477010548 477010434 1.300000e-38 171
30 TraesCS2B01G506000 chr1D 94.643 112 3 1 4 112 299621998 299621887 1.300000e-38 171
31 TraesCS2B01G506000 chr6A 93.043 115 5 1 1 112 107603960 107604074 6.030000e-37 165
32 TraesCS2B01G506000 chr4B 87.591 137 12 5 2128 2264 358850195 358850326 1.310000e-33 154
33 TraesCS2B01G506000 chr4A 95.588 68 3 0 45 112 85189777 85189710 2.870000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G506000 chr2B 701358811 701361533 2722 False 5029.0 5029 100.0000 1 2723 1 chr2B.!!$F2 2722
1 TraesCS2B01G506000 chr2B 724934402 724935559 1157 True 776.0 776 79.3070 537 1688 1 chr2B.!!$R3 1151
2 TraesCS2B01G506000 chr2D 580455394 580456937 1543 False 2109.0 2109 91.2380 148 1715 1 chr2D.!!$F2 1567
3 TraesCS2B01G506000 chr2D 580425204 580426041 837 False 941.0 941 87.1160 109 943 1 chr2D.!!$F1 834
4 TraesCS2B01G506000 chr2D 596211862 596213015 1153 True 802.0 802 79.7460 537 1684 1 chr2D.!!$R1 1147
5 TraesCS2B01G506000 chr2A 718261793 718266133 4340 False 1491.0 2108 88.6470 109 1695 2 chr2A.!!$F1 1586
6 TraesCS2B01G506000 chr2A 729870090 729871243 1153 True 824.0 824 80.0850 537 1684 1 chr2A.!!$R1 1147
7 TraesCS2B01G506000 chr5A 446691822 446692389 567 False 612.0 612 86.4350 2128 2690 1 chr5A.!!$F3 562
8 TraesCS2B01G506000 chr7D 268844843 268845401 558 True 460.0 460 82.2180 2128 2673 1 chr7D.!!$R2 545
9 TraesCS2B01G506000 chr7A 226724534 226725080 546 True 455.0 455 82.1490 2128 2690 1 chr7A.!!$R1 562
10 TraesCS2B01G506000 chr6D 232745728 232746535 807 True 250.5 316 87.1215 2200 2679 2 chr6D.!!$R1 479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 366 0.253327 GGAGTCCTTTGCCTACCCTG 59.747 60.0 0.41 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 4656 0.179004 TGCATCCAAACGGGTCTTGT 60.179 50.0 0.0 0.0 38.11 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.462606 CAAATTATCCCTAGTTAATATGACCCC 57.537 37.037 0.00 0.00 0.00 4.95
27 28 9.419667 AAATTATCCCTAGTTAATATGACCCCT 57.580 33.333 0.00 0.00 0.00 4.79
28 29 9.419667 AATTATCCCTAGTTAATATGACCCCTT 57.580 33.333 0.00 0.00 0.00 3.95
29 30 8.823810 TTATCCCTAGTTAATATGACCCCTTT 57.176 34.615 0.00 0.00 0.00 3.11
30 31 9.917118 TTATCCCTAGTTAATATGACCCCTTTA 57.083 33.333 0.00 0.00 0.00 1.85
31 32 8.823810 ATCCCTAGTTAATATGACCCCTTTAA 57.176 34.615 0.00 0.00 0.00 1.52
32 33 8.271398 TCCCTAGTTAATATGACCCCTTTAAG 57.729 38.462 0.00 0.00 0.00 1.85
33 34 8.075621 TCCCTAGTTAATATGACCCCTTTAAGA 58.924 37.037 0.00 0.00 0.00 2.10
34 35 8.720537 CCCTAGTTAATATGACCCCTTTAAGAA 58.279 37.037 0.00 0.00 0.00 2.52
37 38 8.818622 AGTTAATATGACCCCTTTAAGAAACC 57.181 34.615 0.00 0.00 0.00 3.27
38 39 8.395605 AGTTAATATGACCCCTTTAAGAAACCA 58.604 33.333 0.00 0.00 0.00 3.67
39 40 8.683615 GTTAATATGACCCCTTTAAGAAACCAG 58.316 37.037 0.00 0.00 0.00 4.00
40 41 6.652205 ATATGACCCCTTTAAGAAACCAGA 57.348 37.500 0.00 0.00 0.00 3.86
41 42 4.367039 TGACCCCTTTAAGAAACCAGAG 57.633 45.455 0.00 0.00 0.00 3.35
42 43 3.977999 TGACCCCTTTAAGAAACCAGAGA 59.022 43.478 0.00 0.00 0.00 3.10
43 44 4.414182 TGACCCCTTTAAGAAACCAGAGAA 59.586 41.667 0.00 0.00 0.00 2.87
44 45 5.103855 TGACCCCTTTAAGAAACCAGAGAAA 60.104 40.000 0.00 0.00 0.00 2.52
45 46 5.773091 ACCCCTTTAAGAAACCAGAGAAAA 58.227 37.500 0.00 0.00 0.00 2.29
46 47 6.199376 ACCCCTTTAAGAAACCAGAGAAAAA 58.801 36.000 0.00 0.00 0.00 1.94
47 48 6.844388 ACCCCTTTAAGAAACCAGAGAAAAAT 59.156 34.615 0.00 0.00 0.00 1.82
48 49 7.015292 ACCCCTTTAAGAAACCAGAGAAAAATC 59.985 37.037 0.00 0.00 0.00 2.17
49 50 7.084486 CCCTTTAAGAAACCAGAGAAAAATCG 58.916 38.462 0.00 0.00 0.00 3.34
50 51 7.255486 CCCTTTAAGAAACCAGAGAAAAATCGT 60.255 37.037 0.00 0.00 0.00 3.73
51 52 7.803659 CCTTTAAGAAACCAGAGAAAAATCGTC 59.196 37.037 0.00 0.00 0.00 4.20
52 53 7.795482 TTAAGAAACCAGAGAAAAATCGTCA 57.205 32.000 0.00 0.00 0.00 4.35
53 54 5.674933 AGAAACCAGAGAAAAATCGTCAC 57.325 39.130 0.00 0.00 0.00 3.67
54 55 5.368989 AGAAACCAGAGAAAAATCGTCACT 58.631 37.500 0.00 0.00 0.00 3.41
55 56 5.467063 AGAAACCAGAGAAAAATCGTCACTC 59.533 40.000 0.00 0.00 0.00 3.51
56 57 4.608948 ACCAGAGAAAAATCGTCACTCT 57.391 40.909 0.00 0.00 38.27 3.24
57 58 4.962155 ACCAGAGAAAAATCGTCACTCTT 58.038 39.130 0.00 0.00 36.06 2.85
58 59 6.097915 ACCAGAGAAAAATCGTCACTCTTA 57.902 37.500 0.00 0.00 36.06 2.10
59 60 6.522054 ACCAGAGAAAAATCGTCACTCTTAA 58.478 36.000 0.00 0.00 36.06 1.85
60 61 6.990349 ACCAGAGAAAAATCGTCACTCTTAAA 59.010 34.615 0.00 0.00 36.06 1.52
61 62 7.171678 ACCAGAGAAAAATCGTCACTCTTAAAG 59.828 37.037 0.00 0.00 36.06 1.85
62 63 7.360438 CCAGAGAAAAATCGTCACTCTTAAAGG 60.360 40.741 0.00 0.00 36.06 3.11
63 64 7.171678 CAGAGAAAAATCGTCACTCTTAAAGGT 59.828 37.037 0.00 0.00 36.06 3.50
64 65 8.365647 AGAGAAAAATCGTCACTCTTAAAGGTA 58.634 33.333 0.00 0.00 34.85 3.08
65 66 9.152595 GAGAAAAATCGTCACTCTTAAAGGTAT 57.847 33.333 0.00 0.00 0.00 2.73
66 67 9.503399 AGAAAAATCGTCACTCTTAAAGGTATT 57.497 29.630 0.00 0.00 0.00 1.89
69 70 9.893305 AAAATCGTCACTCTTAAAGGTATTTTG 57.107 29.630 0.00 0.00 0.00 2.44
70 71 8.842358 AATCGTCACTCTTAAAGGTATTTTGA 57.158 30.769 0.00 0.00 0.00 2.69
71 72 7.884816 TCGTCACTCTTAAAGGTATTTTGAG 57.115 36.000 0.00 0.00 35.60 3.02
72 73 6.367969 TCGTCACTCTTAAAGGTATTTTGAGC 59.632 38.462 0.00 0.00 33.61 4.26
73 74 6.369065 CGTCACTCTTAAAGGTATTTTGAGCT 59.631 38.462 0.00 0.00 33.61 4.09
74 75 7.095187 CGTCACTCTTAAAGGTATTTTGAGCTT 60.095 37.037 0.00 0.00 38.79 3.74
75 76 8.231161 GTCACTCTTAAAGGTATTTTGAGCTTC 58.769 37.037 0.00 0.00 36.15 3.86
76 77 7.390718 TCACTCTTAAAGGTATTTTGAGCTTCC 59.609 37.037 0.00 0.00 36.15 3.46
77 78 7.174946 CACTCTTAAAGGTATTTTGAGCTTCCA 59.825 37.037 0.00 0.00 36.15 3.53
78 79 7.175119 ACTCTTAAAGGTATTTTGAGCTTCCAC 59.825 37.037 0.00 0.00 36.15 4.02
79 80 7.001674 TCTTAAAGGTATTTTGAGCTTCCACA 58.998 34.615 0.00 0.00 36.15 4.17
80 81 7.504238 TCTTAAAGGTATTTTGAGCTTCCACAA 59.496 33.333 0.00 0.00 36.15 3.33
81 82 6.670695 AAAGGTATTTTGAGCTTCCACAAT 57.329 33.333 0.00 0.00 36.15 2.71
82 83 6.670695 AAGGTATTTTGAGCTTCCACAATT 57.329 33.333 0.00 0.00 31.59 2.32
83 84 6.670695 AGGTATTTTGAGCTTCCACAATTT 57.329 33.333 0.00 0.00 0.00 1.82
84 85 7.066307 AGGTATTTTGAGCTTCCACAATTTT 57.934 32.000 0.00 0.00 0.00 1.82
85 86 7.154656 AGGTATTTTGAGCTTCCACAATTTTC 58.845 34.615 0.00 0.00 0.00 2.29
86 87 7.015584 AGGTATTTTGAGCTTCCACAATTTTCT 59.984 33.333 0.00 0.00 0.00 2.52
87 88 7.116805 GGTATTTTGAGCTTCCACAATTTTCTG 59.883 37.037 0.00 0.00 0.00 3.02
88 89 5.596836 TTTGAGCTTCCACAATTTTCTGT 57.403 34.783 0.00 0.00 0.00 3.41
89 90 5.596836 TTGAGCTTCCACAATTTTCTGTT 57.403 34.783 0.00 0.00 0.00 3.16
90 91 4.935702 TGAGCTTCCACAATTTTCTGTTG 58.064 39.130 0.00 0.00 0.00 3.33
91 92 4.402155 TGAGCTTCCACAATTTTCTGTTGT 59.598 37.500 0.00 0.00 40.23 3.32
92 93 4.936891 AGCTTCCACAATTTTCTGTTGTC 58.063 39.130 0.00 0.00 37.69 3.18
93 94 4.402155 AGCTTCCACAATTTTCTGTTGTCA 59.598 37.500 0.00 0.00 37.69 3.58
94 95 5.105392 AGCTTCCACAATTTTCTGTTGTCAA 60.105 36.000 0.00 0.00 37.69 3.18
95 96 5.005682 GCTTCCACAATTTTCTGTTGTCAAC 59.994 40.000 8.86 8.86 37.69 3.18
96 97 5.004922 TCCACAATTTTCTGTTGTCAACC 57.995 39.130 13.13 0.00 37.69 3.77
97 98 3.796178 CCACAATTTTCTGTTGTCAACCG 59.204 43.478 13.13 7.01 37.69 4.44
98 99 4.439426 CCACAATTTTCTGTTGTCAACCGA 60.439 41.667 13.13 9.37 37.69 4.69
99 100 5.098893 CACAATTTTCTGTTGTCAACCGAA 58.901 37.500 16.00 16.00 37.69 4.30
100 101 5.574830 CACAATTTTCTGTTGTCAACCGAAA 59.425 36.000 23.49 23.49 41.01 3.46
101 102 5.575218 ACAATTTTCTGTTGTCAACCGAAAC 59.425 36.000 25.77 0.00 41.94 2.78
102 103 3.768468 TTTCTGTTGTCAACCGAAACC 57.232 42.857 23.49 0.00 38.91 3.27
103 104 2.702592 TCTGTTGTCAACCGAAACCT 57.297 45.000 13.13 0.00 0.00 3.50
104 105 2.557317 TCTGTTGTCAACCGAAACCTC 58.443 47.619 13.13 0.00 0.00 3.85
105 106 2.093394 TCTGTTGTCAACCGAAACCTCA 60.093 45.455 13.13 0.00 0.00 3.86
106 107 2.878406 CTGTTGTCAACCGAAACCTCAT 59.122 45.455 13.13 0.00 0.00 2.90
107 108 3.283751 TGTTGTCAACCGAAACCTCATT 58.716 40.909 13.13 0.00 0.00 2.57
125 126 5.282055 TCATTATGAGGAAGCACTGTAGG 57.718 43.478 0.00 0.00 0.00 3.18
144 145 2.747446 AGGCCTATAAACAAGCAACACG 59.253 45.455 1.29 0.00 0.00 4.49
157 158 2.618241 AGCAACACGAAATGAGCTTCAA 59.382 40.909 0.00 0.00 39.18 2.69
171 172 4.522789 TGAGCTTCAACCCAAATAGAAACC 59.477 41.667 0.00 0.00 0.00 3.27
174 175 4.157840 GCTTCAACCCAAATAGAAACCGAT 59.842 41.667 0.00 0.00 0.00 4.18
180 181 4.013728 CCCAAATAGAAACCGATTGACCA 58.986 43.478 0.00 0.00 0.00 4.02
197 198 3.866883 ACCAAAAACAGTGGTCAGTTG 57.133 42.857 0.00 0.00 46.79 3.16
201 202 5.221541 ACCAAAAACAGTGGTCAGTTGAAAA 60.222 36.000 0.00 0.00 46.79 2.29
219 220 4.874966 TGAAAATTTGGGCTCAAAACACAG 59.125 37.500 17.22 0.00 44.83 3.66
222 223 0.459489 TTGGGCTCAAAACACAGCAC 59.541 50.000 0.00 0.00 39.72 4.40
232 233 1.094785 AACACAGCACCAGTCACAAC 58.905 50.000 0.00 0.00 0.00 3.32
351 366 0.253327 GGAGTCCTTTGCCTACCCTG 59.747 60.000 0.41 0.00 0.00 4.45
352 367 0.253327 GAGTCCTTTGCCTACCCTGG 59.747 60.000 0.00 0.00 0.00 4.45
378 393 4.813346 GGCTTTCCGAACCCAGAA 57.187 55.556 0.00 0.00 0.00 3.02
425 440 1.318158 ACCCGGCTAGAAATCGTCGT 61.318 55.000 0.00 0.00 0.00 4.34
455 470 1.079405 ATATAACGCCCGCATCCCG 60.079 57.895 0.00 0.00 0.00 5.14
532 547 1.298339 GCGTGCGCAATGGGAATAC 60.298 57.895 14.00 0.00 41.49 1.89
533 548 1.011242 CGTGCGCAATGGGAATACG 60.011 57.895 14.00 3.83 0.00 3.06
542 557 0.756294 ATGGGAATACGCGACATGGA 59.244 50.000 15.93 0.00 0.00 3.41
570 585 2.042261 ACAGCCTCCGGGGGTATT 59.958 61.111 24.80 5.11 45.10 1.89
587 602 4.682334 TACCACGGTCGCCTCCCA 62.682 66.667 0.00 0.00 0.00 4.37
608 623 3.869272 CGCCTCCATCTGCGCAAC 61.869 66.667 13.05 0.00 44.64 4.17
621 636 3.499737 GCAACGATCGGTGGCCAG 61.500 66.667 32.53 9.23 39.89 4.85
713 3473 1.344906 CCAGGGAAGGAGGAGGAAGAT 60.345 57.143 0.00 0.00 0.00 2.40
877 3637 0.593008 CGACTCCAAACACGTCGTCA 60.593 55.000 0.00 0.00 43.82 4.35
1437 4203 5.735922 GCTCTACAAGATCTTCGATCTGCTT 60.736 44.000 4.57 0.00 0.00 3.91
1460 4228 2.493973 GCCAGGCGAGAGAGAGTG 59.506 66.667 0.00 0.00 0.00 3.51
1462 4230 1.680651 CCAGGCGAGAGAGAGTGGT 60.681 63.158 0.00 0.00 0.00 4.16
1474 4242 4.335647 AGTGGTGGCCTGCCTTCG 62.336 66.667 16.05 0.00 36.94 3.79
1499 4267 4.428845 GGGACACGAGGTACAGGA 57.571 61.111 0.00 0.00 28.84 3.86
1502 4270 0.245813 GGACACGAGGTACAGGAACC 59.754 60.000 0.00 0.00 40.06 3.62
1695 4495 4.070552 GTTCCGGAGACTGGCGCT 62.071 66.667 7.64 0.00 0.00 5.92
1697 4497 4.742649 TCCGGAGACTGGCGCTCT 62.743 66.667 7.64 1.29 32.98 4.09
1700 4500 2.973899 GGAGACTGGCGCTCTGAA 59.026 61.111 7.64 0.00 32.98 3.02
1709 4509 2.884685 CGCTCTGAAGCCGCTGAG 60.885 66.667 0.00 0.00 46.34 3.35
1712 4512 1.519013 CTCTGAAGCCGCTGAGCTC 60.519 63.158 6.82 6.82 44.11 4.09
1713 4513 1.947597 CTCTGAAGCCGCTGAGCTCT 61.948 60.000 16.19 0.00 44.11 4.09
1714 4514 1.810441 CTGAAGCCGCTGAGCTCTG 60.810 63.158 16.19 15.96 44.11 3.35
1715 4515 2.264166 GAAGCCGCTGAGCTCTGT 59.736 61.111 20.24 1.65 44.11 3.41
1716 4516 1.809209 GAAGCCGCTGAGCTCTGTC 60.809 63.158 20.24 12.25 44.11 3.51
1717 4517 2.498291 GAAGCCGCTGAGCTCTGTCA 62.498 60.000 20.24 0.00 44.11 3.58
1718 4518 2.047844 GCCGCTGAGCTCTGTCAA 60.048 61.111 20.24 0.00 0.00 3.18
1719 4519 1.669115 GCCGCTGAGCTCTGTCAAA 60.669 57.895 20.24 0.00 0.00 2.69
1720 4520 1.023513 GCCGCTGAGCTCTGTCAAAT 61.024 55.000 20.24 0.00 0.00 2.32
1721 4521 1.740380 GCCGCTGAGCTCTGTCAAATA 60.740 52.381 20.24 0.00 0.00 1.40
1722 4522 2.621338 CCGCTGAGCTCTGTCAAATAA 58.379 47.619 20.24 0.00 0.00 1.40
1723 4523 3.201290 CCGCTGAGCTCTGTCAAATAAT 58.799 45.455 20.24 0.00 0.00 1.28
1724 4524 3.624861 CCGCTGAGCTCTGTCAAATAATT 59.375 43.478 20.24 0.00 0.00 1.40
1725 4525 4.811024 CCGCTGAGCTCTGTCAAATAATTA 59.189 41.667 20.24 0.00 0.00 1.40
1726 4526 5.050499 CCGCTGAGCTCTGTCAAATAATTAG 60.050 44.000 20.24 3.76 0.00 1.73
1727 4527 5.557893 CGCTGAGCTCTGTCAAATAATTAGC 60.558 44.000 20.24 12.06 0.00 3.09
1728 4528 5.526846 GCTGAGCTCTGTCAAATAATTAGCT 59.473 40.000 20.24 0.00 41.29 3.32
1729 4529 6.511444 GCTGAGCTCTGTCAAATAATTAGCTG 60.511 42.308 20.24 0.00 38.85 4.24
1730 4530 6.409704 TGAGCTCTGTCAAATAATTAGCTGT 58.590 36.000 16.19 0.00 38.85 4.40
1731 4531 6.881065 TGAGCTCTGTCAAATAATTAGCTGTT 59.119 34.615 16.19 0.00 38.85 3.16
1732 4532 8.040727 TGAGCTCTGTCAAATAATTAGCTGTTA 58.959 33.333 16.19 0.00 38.85 2.41
1733 4533 8.792830 AGCTCTGTCAAATAATTAGCTGTTAA 57.207 30.769 0.00 0.00 37.44 2.01
1734 4534 9.231297 AGCTCTGTCAAATAATTAGCTGTTAAA 57.769 29.630 0.00 0.00 37.44 1.52
1735 4535 9.495754 GCTCTGTCAAATAATTAGCTGTTAAAG 57.504 33.333 0.00 0.00 0.00 1.85
1751 4551 9.245481 AGCTGTTAAAGTAGTAGAAGACATAGT 57.755 33.333 0.00 0.00 0.00 2.12
1752 4552 9.857957 GCTGTTAAAGTAGTAGAAGACATAGTT 57.142 33.333 0.00 0.00 0.00 2.24
1754 4554 9.635520 TGTTAAAGTAGTAGAAGACATAGTTGC 57.364 33.333 0.00 0.00 0.00 4.17
1755 4555 9.635520 GTTAAAGTAGTAGAAGACATAGTTGCA 57.364 33.333 0.00 0.00 0.00 4.08
1756 4556 9.635520 TTAAAGTAGTAGAAGACATAGTTGCAC 57.364 33.333 0.00 0.00 0.00 4.57
1757 4557 5.881447 AGTAGTAGAAGACATAGTTGCACG 58.119 41.667 0.00 0.00 0.00 5.34
1758 4558 5.646793 AGTAGTAGAAGACATAGTTGCACGA 59.353 40.000 0.00 0.00 0.00 4.35
1759 4559 4.987832 AGTAGAAGACATAGTTGCACGAG 58.012 43.478 0.00 0.00 0.00 4.18
1760 4560 4.700692 AGTAGAAGACATAGTTGCACGAGA 59.299 41.667 0.00 0.00 0.00 4.04
1761 4561 4.521130 AGAAGACATAGTTGCACGAGAA 57.479 40.909 0.00 0.00 0.00 2.87
1762 4562 4.883083 AGAAGACATAGTTGCACGAGAAA 58.117 39.130 0.00 0.00 0.00 2.52
1763 4563 5.482908 AGAAGACATAGTTGCACGAGAAAT 58.517 37.500 0.00 0.00 0.00 2.17
1764 4564 6.631016 AGAAGACATAGTTGCACGAGAAATA 58.369 36.000 0.00 0.00 0.00 1.40
1765 4565 6.754209 AGAAGACATAGTTGCACGAGAAATAG 59.246 38.462 0.00 0.00 0.00 1.73
1766 4566 4.806247 AGACATAGTTGCACGAGAAATAGC 59.194 41.667 0.00 0.00 0.00 2.97
1767 4567 3.551890 ACATAGTTGCACGAGAAATAGCG 59.448 43.478 0.00 0.00 0.00 4.26
1768 4568 2.363788 AGTTGCACGAGAAATAGCGA 57.636 45.000 0.00 0.00 0.00 4.93
1769 4569 2.263077 AGTTGCACGAGAAATAGCGAG 58.737 47.619 0.00 0.00 0.00 5.03
1770 4570 0.999406 TTGCACGAGAAATAGCGAGC 59.001 50.000 0.00 0.00 42.86 5.03
1771 4571 2.665777 GCACGAGAAATAGCGAGCA 58.334 52.632 0.00 0.00 42.28 4.26
1772 4572 1.212616 GCACGAGAAATAGCGAGCAT 58.787 50.000 0.00 0.00 42.28 3.79
1773 4573 2.223711 TGCACGAGAAATAGCGAGCATA 60.224 45.455 0.00 0.00 46.05 3.14
1774 4574 2.154007 GCACGAGAAATAGCGAGCATAC 59.846 50.000 0.00 0.00 42.28 2.39
1775 4575 3.372060 CACGAGAAATAGCGAGCATACA 58.628 45.455 0.00 0.00 0.00 2.29
1776 4576 3.796717 CACGAGAAATAGCGAGCATACAA 59.203 43.478 0.00 0.00 0.00 2.41
1777 4577 4.267690 CACGAGAAATAGCGAGCATACAAA 59.732 41.667 0.00 0.00 0.00 2.83
1778 4578 4.504461 ACGAGAAATAGCGAGCATACAAAG 59.496 41.667 0.00 0.00 0.00 2.77
1779 4579 4.504461 CGAGAAATAGCGAGCATACAAAGT 59.496 41.667 0.00 0.00 0.00 2.66
1780 4580 5.005779 CGAGAAATAGCGAGCATACAAAGTT 59.994 40.000 0.00 0.00 0.00 2.66
1781 4581 6.455646 CGAGAAATAGCGAGCATACAAAGTTT 60.456 38.462 0.00 0.00 0.00 2.66
1782 4582 7.145932 AGAAATAGCGAGCATACAAAGTTTT 57.854 32.000 0.00 0.00 0.00 2.43
1783 4583 7.244192 AGAAATAGCGAGCATACAAAGTTTTC 58.756 34.615 0.00 0.00 0.00 2.29
1784 4584 6.743575 AATAGCGAGCATACAAAGTTTTCT 57.256 33.333 0.00 0.00 0.00 2.52
1785 4585 7.843490 AATAGCGAGCATACAAAGTTTTCTA 57.157 32.000 0.00 0.00 0.00 2.10
1786 4586 5.786401 AGCGAGCATACAAAGTTTTCTAG 57.214 39.130 0.00 0.00 0.00 2.43
1787 4587 5.238583 AGCGAGCATACAAAGTTTTCTAGT 58.761 37.500 0.00 0.00 0.00 2.57
1788 4588 6.395629 AGCGAGCATACAAAGTTTTCTAGTA 58.604 36.000 0.00 0.00 0.00 1.82
1789 4589 7.042335 AGCGAGCATACAAAGTTTTCTAGTAT 58.958 34.615 0.00 0.00 34.11 2.12
1790 4590 8.195436 AGCGAGCATACAAAGTTTTCTAGTATA 58.805 33.333 0.00 0.00 33.22 1.47
1791 4591 8.814235 GCGAGCATACAAAGTTTTCTAGTATAA 58.186 33.333 0.00 0.00 33.22 0.98
1794 4594 9.392259 AGCATACAAAGTTTTCTAGTATAACCC 57.608 33.333 0.00 0.00 33.22 4.11
1795 4595 9.169592 GCATACAAAGTTTTCTAGTATAACCCA 57.830 33.333 0.00 0.00 33.22 4.51
1799 4599 9.449719 ACAAAGTTTTCTAGTATAACCCAGATG 57.550 33.333 0.00 0.00 0.00 2.90
1800 4600 9.667107 CAAAGTTTTCTAGTATAACCCAGATGA 57.333 33.333 0.00 0.00 0.00 2.92
1807 4607 9.656323 TTCTAGTATAACCCAGATGATAAGTGT 57.344 33.333 0.00 0.00 0.00 3.55
1808 4608 9.298250 TCTAGTATAACCCAGATGATAAGTGTC 57.702 37.037 0.00 0.00 0.00 3.67
1809 4609 7.914427 AGTATAACCCAGATGATAAGTGTCA 57.086 36.000 0.00 0.00 0.00 3.58
1810 4610 7.727181 AGTATAACCCAGATGATAAGTGTCAC 58.273 38.462 0.00 0.00 0.00 3.67
1811 4611 4.908601 AACCCAGATGATAAGTGTCACA 57.091 40.909 5.62 0.00 0.00 3.58
1812 4612 4.207891 ACCCAGATGATAAGTGTCACAC 57.792 45.455 0.00 0.00 34.10 3.82
1813 4613 3.190079 CCCAGATGATAAGTGTCACACG 58.810 50.000 1.22 0.00 39.64 4.49
1814 4614 3.368427 CCCAGATGATAAGTGTCACACGT 60.368 47.826 1.22 1.06 39.64 4.49
1815 4615 3.614176 CCAGATGATAAGTGTCACACGTG 59.386 47.826 15.48 15.48 39.64 4.49
1816 4616 4.237724 CAGATGATAAGTGTCACACGTGT 58.762 43.478 17.22 17.22 39.64 4.49
1817 4617 4.090498 CAGATGATAAGTGTCACACGTGTG 59.910 45.833 37.04 37.04 46.91 3.82
1818 4618 2.749776 TGATAAGTGTCACACGTGTGG 58.250 47.619 39.88 25.18 45.65 4.17
1819 4619 2.362717 TGATAAGTGTCACACGTGTGGA 59.637 45.455 39.88 27.32 45.65 4.02
1820 4620 3.006430 TGATAAGTGTCACACGTGTGGAT 59.994 43.478 39.88 25.13 45.65 3.41
1821 4621 1.581934 AAGTGTCACACGTGTGGATG 58.418 50.000 39.88 21.14 45.65 3.51
1822 4622 0.750249 AGTGTCACACGTGTGGATGA 59.250 50.000 39.88 23.51 45.65 2.92
1823 4623 1.138069 AGTGTCACACGTGTGGATGAA 59.862 47.619 39.88 23.15 45.65 2.57
1824 4624 1.937223 GTGTCACACGTGTGGATGAAA 59.063 47.619 39.88 22.46 45.65 2.69
1825 4625 2.548057 GTGTCACACGTGTGGATGAAAT 59.452 45.455 39.88 6.26 45.65 2.17
1826 4626 3.743911 GTGTCACACGTGTGGATGAAATA 59.256 43.478 39.88 21.09 45.65 1.40
1827 4627 4.212425 GTGTCACACGTGTGGATGAAATAA 59.788 41.667 39.88 20.41 45.65 1.40
1828 4628 5.000591 TGTCACACGTGTGGATGAAATAAT 58.999 37.500 39.88 4.71 45.65 1.28
1829 4629 5.121611 TGTCACACGTGTGGATGAAATAATC 59.878 40.000 39.88 19.07 45.65 1.75
1830 4630 4.328712 TCACACGTGTGGATGAAATAATCG 59.671 41.667 39.88 16.17 45.65 3.34
1831 4631 3.621268 ACACGTGTGGATGAAATAATCGG 59.379 43.478 22.71 0.00 34.19 4.18
1832 4632 3.002246 CACGTGTGGATGAAATAATCGGG 59.998 47.826 7.58 0.00 0.00 5.14
1833 4633 3.202906 CGTGTGGATGAAATAATCGGGT 58.797 45.455 0.00 0.00 0.00 5.28
1834 4634 4.141892 ACGTGTGGATGAAATAATCGGGTA 60.142 41.667 0.00 0.00 0.00 3.69
1835 4635 4.812091 CGTGTGGATGAAATAATCGGGTAA 59.188 41.667 0.00 0.00 0.00 2.85
1836 4636 5.294799 CGTGTGGATGAAATAATCGGGTAAA 59.705 40.000 0.00 0.00 0.00 2.01
1837 4637 6.017440 CGTGTGGATGAAATAATCGGGTAAAT 60.017 38.462 0.00 0.00 0.00 1.40
1838 4638 7.171848 CGTGTGGATGAAATAATCGGGTAAATA 59.828 37.037 0.00 0.00 0.00 1.40
1839 4639 9.010029 GTGTGGATGAAATAATCGGGTAAATAT 57.990 33.333 0.00 0.00 0.00 1.28
1840 4640 9.008965 TGTGGATGAAATAATCGGGTAAATATG 57.991 33.333 0.00 0.00 0.00 1.78
1841 4641 9.226606 GTGGATGAAATAATCGGGTAAATATGA 57.773 33.333 0.00 0.00 0.00 2.15
1842 4642 9.973661 TGGATGAAATAATCGGGTAAATATGAT 57.026 29.630 0.00 0.00 0.00 2.45
1853 4653 9.832445 ATCGGGTAAATATGATATACCATCAAC 57.168 33.333 6.70 0.00 40.71 3.18
1854 4654 8.262227 TCGGGTAAATATGATATACCATCAACC 58.738 37.037 6.70 0.00 40.71 3.77
1855 4655 8.044309 CGGGTAAATATGATATACCATCAACCA 58.956 37.037 6.70 0.00 40.71 3.67
1856 4656 9.747898 GGGTAAATATGATATACCATCAACCAA 57.252 33.333 6.70 0.00 40.71 3.67
1862 4662 7.807977 ATGATATACCATCAACCAACAAGAC 57.192 36.000 0.00 0.00 0.00 3.01
1863 4663 6.119536 TGATATACCATCAACCAACAAGACC 58.880 40.000 0.00 0.00 0.00 3.85
1864 4664 1.995376 ACCATCAACCAACAAGACCC 58.005 50.000 0.00 0.00 0.00 4.46
1865 4665 0.881118 CCATCAACCAACAAGACCCG 59.119 55.000 0.00 0.00 0.00 5.28
1866 4666 1.604604 CATCAACCAACAAGACCCGT 58.395 50.000 0.00 0.00 0.00 5.28
1867 4667 1.953686 CATCAACCAACAAGACCCGTT 59.046 47.619 0.00 0.00 0.00 4.44
1868 4668 2.131776 TCAACCAACAAGACCCGTTT 57.868 45.000 0.00 0.00 0.00 3.60
1869 4669 1.746220 TCAACCAACAAGACCCGTTTG 59.254 47.619 0.00 0.00 0.00 2.93
1870 4670 1.107945 AACCAACAAGACCCGTTTGG 58.892 50.000 0.00 0.00 41.37 3.28
1871 4671 0.256464 ACCAACAAGACCCGTTTGGA 59.744 50.000 6.22 0.00 37.49 3.53
1872 4672 1.133606 ACCAACAAGACCCGTTTGGAT 60.134 47.619 6.22 0.00 37.49 3.41
1873 4673 1.269448 CCAACAAGACCCGTTTGGATG 59.731 52.381 0.00 0.00 37.49 3.51
1874 4674 0.958822 AACAAGACCCGTTTGGATGC 59.041 50.000 0.00 0.00 37.49 3.91
1875 4675 0.179004 ACAAGACCCGTTTGGATGCA 60.179 50.000 0.00 0.00 37.49 3.96
1876 4676 0.958091 CAAGACCCGTTTGGATGCAA 59.042 50.000 0.00 0.00 37.49 4.08
1877 4677 1.339610 CAAGACCCGTTTGGATGCAAA 59.660 47.619 8.47 8.47 37.49 3.68
1878 4678 1.247567 AGACCCGTTTGGATGCAAAG 58.752 50.000 13.15 4.32 37.49 2.77
1879 4679 0.958822 GACCCGTTTGGATGCAAAGT 59.041 50.000 13.15 7.67 37.49 2.66
1880 4680 2.156098 GACCCGTTTGGATGCAAAGTA 58.844 47.619 13.15 0.00 37.49 2.24
1881 4681 2.752903 GACCCGTTTGGATGCAAAGTAT 59.247 45.455 13.15 0.00 37.49 2.12
1882 4682 3.161866 ACCCGTTTGGATGCAAAGTATT 58.838 40.909 13.15 0.00 37.49 1.89
1883 4683 3.576550 ACCCGTTTGGATGCAAAGTATTT 59.423 39.130 13.15 0.00 36.33 1.40
1884 4684 4.173256 CCCGTTTGGATGCAAAGTATTTC 58.827 43.478 13.15 0.00 33.92 2.17
1885 4685 4.173256 CCGTTTGGATGCAAAGTATTTCC 58.827 43.478 13.15 0.00 33.92 3.13
1886 4686 4.321601 CCGTTTGGATGCAAAGTATTTCCA 60.322 41.667 13.15 0.00 33.92 3.53
1887 4687 5.226396 CGTTTGGATGCAAAGTATTTCCAA 58.774 37.500 13.15 10.85 36.72 3.53
1888 4688 5.694006 CGTTTGGATGCAAAGTATTTCCAAA 59.306 36.000 19.57 19.57 42.37 3.28
1889 4689 6.128849 CGTTTGGATGCAAAGTATTTCCAAAG 60.129 38.462 22.55 15.07 44.00 2.77
1890 4690 6.418057 TTGGATGCAAAGTATTTCCAAAGT 57.582 33.333 12.20 0.00 35.92 2.66
1891 4691 7.531857 TTGGATGCAAAGTATTTCCAAAGTA 57.468 32.000 12.20 0.00 35.92 2.24
1892 4692 7.531857 TGGATGCAAAGTATTTCCAAAGTAA 57.468 32.000 0.41 0.00 35.03 2.24
1893 4693 7.601856 TGGATGCAAAGTATTTCCAAAGTAAG 58.398 34.615 0.41 0.00 35.03 2.34
1894 4694 7.035612 GGATGCAAAGTATTTCCAAAGTAAGG 58.964 38.462 0.00 0.00 35.03 2.69
1895 4695 6.969993 TGCAAAGTATTTCCAAAGTAAGGT 57.030 33.333 0.00 0.00 35.03 3.50
1896 4696 6.744112 TGCAAAGTATTTCCAAAGTAAGGTG 58.256 36.000 0.00 0.00 35.03 4.00
1897 4697 6.322712 TGCAAAGTATTTCCAAAGTAAGGTGT 59.677 34.615 0.00 0.00 35.03 4.16
1898 4698 7.502895 TGCAAAGTATTTCCAAAGTAAGGTGTA 59.497 33.333 0.00 0.00 35.03 2.90
1899 4699 8.520351 GCAAAGTATTTCCAAAGTAAGGTGTAT 58.480 33.333 0.00 0.00 35.03 2.29
1940 4740 8.519799 TCAAATTTCTCTAAGTTTGACCAAGT 57.480 30.769 5.12 0.00 42.78 3.16
1941 4741 8.966868 TCAAATTTCTCTAAGTTTGACCAAGTT 58.033 29.630 5.12 0.00 42.78 2.66
1942 4742 9.586435 CAAATTTCTCTAAGTTTGACCAAGTTT 57.414 29.630 1.22 0.00 42.05 2.66
1948 4748 9.924650 TCTCTAAGTTTGACCAAGTTTATAGAC 57.075 33.333 0.00 0.00 30.16 2.59
1949 4749 9.706691 CTCTAAGTTTGACCAAGTTTATAGACA 57.293 33.333 0.00 0.00 30.16 3.41
1996 4796 8.708378 ACCAAGTCATTATCACTAGATTCATCA 58.292 33.333 0.00 0.00 35.67 3.07
1997 4797 8.986847 CCAAGTCATTATCACTAGATTCATCAC 58.013 37.037 0.00 0.00 35.67 3.06
1998 4798 8.697960 CAAGTCATTATCACTAGATTCATCACG 58.302 37.037 0.00 0.00 35.67 4.35
1999 4799 8.171164 AGTCATTATCACTAGATTCATCACGA 57.829 34.615 0.00 0.00 35.67 4.35
2000 4800 8.633561 AGTCATTATCACTAGATTCATCACGAA 58.366 33.333 0.00 0.00 38.22 3.85
2001 4801 8.695284 GTCATTATCACTAGATTCATCACGAAC 58.305 37.037 0.00 0.00 36.12 3.95
2002 4802 8.633561 TCATTATCACTAGATTCATCACGAACT 58.366 33.333 0.00 0.00 36.12 3.01
2003 4803 9.899226 CATTATCACTAGATTCATCACGAACTA 57.101 33.333 0.00 0.00 36.12 2.24
2007 4807 9.823647 ATCACTAGATTCATCACGAACTATTTT 57.176 29.630 0.00 0.00 36.12 1.82
2008 4808 9.653287 TCACTAGATTCATCACGAACTATTTTT 57.347 29.630 0.00 0.00 36.12 1.94
2069 4869 6.902224 ATTTTGCTGTAAAGTTGGTCAAAC 57.098 33.333 0.00 0.00 39.24 2.93
2070 4870 5.392767 TTTGCTGTAAAGTTGGTCAAACA 57.607 34.783 0.00 0.00 41.61 2.83
2071 4871 5.590530 TTGCTGTAAAGTTGGTCAAACAT 57.409 34.783 0.00 0.00 41.61 2.71
2072 4872 6.701145 TTGCTGTAAAGTTGGTCAAACATA 57.299 33.333 0.00 0.00 41.61 2.29
2073 4873 6.067263 TGCTGTAAAGTTGGTCAAACATAC 57.933 37.500 0.00 0.00 41.61 2.39
2074 4874 5.590663 TGCTGTAAAGTTGGTCAAACATACA 59.409 36.000 7.94 7.94 41.61 2.29
2075 4875 5.912955 GCTGTAAAGTTGGTCAAACATACAC 59.087 40.000 5.21 1.60 41.61 2.90
2076 4876 6.459024 GCTGTAAAGTTGGTCAAACATACACA 60.459 38.462 5.21 0.00 41.61 3.72
2077 4877 7.392494 TGTAAAGTTGGTCAAACATACACAA 57.608 32.000 5.21 0.00 41.61 3.33
2078 4878 8.001881 TGTAAAGTTGGTCAAACATACACAAT 57.998 30.769 5.21 0.00 41.61 2.71
2079 4879 9.121658 TGTAAAGTTGGTCAAACATACACAATA 57.878 29.630 5.21 0.00 41.61 1.90
2080 4880 9.607285 GTAAAGTTGGTCAAACATACACAATAG 57.393 33.333 0.00 0.00 41.61 1.73
2081 4881 7.817418 AAGTTGGTCAAACATACACAATAGT 57.183 32.000 0.00 0.00 41.61 2.12
2082 4882 7.817418 AGTTGGTCAAACATACACAATAGTT 57.183 32.000 0.00 0.00 41.61 2.24
2083 4883 7.648142 AGTTGGTCAAACATACACAATAGTTG 58.352 34.615 0.00 0.00 41.61 3.16
2084 4884 7.500892 AGTTGGTCAAACATACACAATAGTTGA 59.499 33.333 0.00 0.00 41.61 3.18
2085 4885 7.197071 TGGTCAAACATACACAATAGTTGAC 57.803 36.000 0.00 0.00 38.57 3.18
2086 4886 6.995686 TGGTCAAACATACACAATAGTTGACT 59.004 34.615 11.96 0.00 38.92 3.41
2087 4887 7.500892 TGGTCAAACATACACAATAGTTGACTT 59.499 33.333 11.96 0.00 38.92 3.01
2088 4888 8.349983 GGTCAAACATACACAATAGTTGACTTT 58.650 33.333 11.96 0.00 38.92 2.66
2089 4889 9.730420 GTCAAACATACACAATAGTTGACTTTT 57.270 29.630 6.42 0.00 37.46 2.27
2098 4898 9.705290 ACACAATAGTTGACTTTTTGAAAAACT 57.295 25.926 0.00 0.00 0.00 2.66
2125 4925 6.170846 ACACCTTATATTTAGGAACGGAGG 57.829 41.667 9.82 0.00 36.58 4.30
2126 4926 5.071384 ACACCTTATATTTAGGAACGGAGGG 59.929 44.000 9.82 0.00 36.58 4.30
2142 4942 7.614974 GGAACGGAGGGAGTATTACTAGAATAT 59.385 40.741 0.00 0.00 0.00 1.28
2184 4989 7.203218 ACTGAAGTTTTGAAATACTTTGAGGC 58.797 34.615 6.84 0.00 34.88 4.70
2238 5043 3.267483 ACGGTGGTATTGTTGATACTGC 58.733 45.455 0.00 0.00 40.43 4.40
2244 5050 4.155099 TGGTATTGTTGATACTGCGGTTTG 59.845 41.667 1.99 0.00 40.43 2.93
2249 5055 3.628032 TGTTGATACTGCGGTTTGTTTGA 59.372 39.130 1.99 0.00 0.00 2.69
2260 5066 7.923878 ACTGCGGTTTGTTTGAAGTATTAAAAT 59.076 29.630 0.00 0.00 0.00 1.82
2272 5078 6.764560 TGAAGTATTAAAATAAGAGGTCCGGC 59.235 38.462 0.00 0.00 0.00 6.13
2373 5183 8.298854 GCATATTTTAATCACATGGCAGTATCA 58.701 33.333 0.00 0.00 0.00 2.15
2387 5197 5.538813 TGGCAGTATCATATCCTTTCGTAGT 59.461 40.000 0.00 0.00 0.00 2.73
2401 5211 9.838339 ATCCTTTCGTAGTTATTGATTCATTCT 57.162 29.630 0.00 0.00 0.00 2.40
2431 5248 3.126858 CGCATGCACCACACTAGTTAAAT 59.873 43.478 19.57 0.00 0.00 1.40
2436 5254 5.484715 TGCACCACACTAGTTAAATAGGAC 58.515 41.667 14.02 0.00 0.00 3.85
2437 5255 5.247564 TGCACCACACTAGTTAAATAGGACT 59.752 40.000 14.02 0.00 0.00 3.85
2438 5256 5.581085 GCACCACACTAGTTAAATAGGACTG 59.419 44.000 14.02 6.26 0.00 3.51
2439 5257 6.573680 GCACCACACTAGTTAAATAGGACTGA 60.574 42.308 14.02 0.00 0.00 3.41
2440 5258 7.556844 CACCACACTAGTTAAATAGGACTGAT 58.443 38.462 14.02 0.00 0.00 2.90
2441 5259 8.041323 CACCACACTAGTTAAATAGGACTGATT 58.959 37.037 14.02 0.00 0.00 2.57
2443 5261 9.099454 CCACACTAGTTAAATAGGACTGATTTC 57.901 37.037 14.02 0.00 0.00 2.17
2485 5316 0.390340 CGCAACTTCCTAGCTCAGCA 60.390 55.000 0.00 0.00 0.00 4.41
2642 5798 3.313526 CACCAGCCAAACATATCAGTAGC 59.686 47.826 0.00 0.00 0.00 3.58
2643 5799 3.054434 ACCAGCCAAACATATCAGTAGCA 60.054 43.478 0.00 0.00 0.00 3.49
2657 5813 9.330063 CATATCAGTAGCATTCCTAAAACTGAA 57.670 33.333 7.02 0.00 33.20 3.02
2665 5821 8.181904 AGCATTCCTAAAACTGAAAGAATTGA 57.818 30.769 0.00 0.00 37.43 2.57
2692 5848 9.551734 AGTTTTTAGAAAACTGTAGTATTCGGT 57.448 29.630 15.68 0.00 38.88 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.462606 GGGGTCATATTAACTAGGGATAATTTG 57.537 37.037 0.00 2.75 0.00 2.32
1 2 9.419667 AGGGGTCATATTAACTAGGGATAATTT 57.580 33.333 0.00 0.00 0.00 1.82
2 3 9.419667 AAGGGGTCATATTAACTAGGGATAATT 57.580 33.333 0.00 0.00 0.00 1.40
3 4 9.419667 AAAGGGGTCATATTAACTAGGGATAAT 57.580 33.333 0.00 0.00 0.00 1.28
4 5 8.823810 AAAGGGGTCATATTAACTAGGGATAA 57.176 34.615 0.00 0.00 0.00 1.75
5 6 9.917118 TTAAAGGGGTCATATTAACTAGGGATA 57.083 33.333 0.00 0.00 0.00 2.59
6 7 8.823810 TTAAAGGGGTCATATTAACTAGGGAT 57.176 34.615 0.00 0.00 0.00 3.85
7 8 8.075621 TCTTAAAGGGGTCATATTAACTAGGGA 58.924 37.037 0.00 0.00 0.00 4.20
8 9 8.271398 TCTTAAAGGGGTCATATTAACTAGGG 57.729 38.462 0.00 0.00 0.00 3.53
11 12 9.910267 GGTTTCTTAAAGGGGTCATATTAACTA 57.090 33.333 0.00 0.00 0.00 2.24
12 13 8.395605 TGGTTTCTTAAAGGGGTCATATTAACT 58.604 33.333 0.00 0.00 0.00 2.24
13 14 8.584063 TGGTTTCTTAAAGGGGTCATATTAAC 57.416 34.615 0.00 0.00 0.00 2.01
14 15 8.616598 TCTGGTTTCTTAAAGGGGTCATATTAA 58.383 33.333 0.00 0.00 0.00 1.40
15 16 8.165267 TCTGGTTTCTTAAAGGGGTCATATTA 57.835 34.615 0.00 0.00 0.00 0.98
16 17 7.036863 TCTCTGGTTTCTTAAAGGGGTCATATT 60.037 37.037 0.00 0.00 0.00 1.28
17 18 6.447084 TCTCTGGTTTCTTAAAGGGGTCATAT 59.553 38.462 0.00 0.00 0.00 1.78
18 19 5.788533 TCTCTGGTTTCTTAAAGGGGTCATA 59.211 40.000 0.00 0.00 0.00 2.15
19 20 4.601857 TCTCTGGTTTCTTAAAGGGGTCAT 59.398 41.667 0.00 0.00 0.00 3.06
20 21 3.977999 TCTCTGGTTTCTTAAAGGGGTCA 59.022 43.478 0.00 0.00 0.00 4.02
21 22 4.635699 TCTCTGGTTTCTTAAAGGGGTC 57.364 45.455 0.00 0.00 0.00 4.46
22 23 5.397553 TTTCTCTGGTTTCTTAAAGGGGT 57.602 39.130 0.00 0.00 0.00 4.95
23 24 6.724893 TTTTTCTCTGGTTTCTTAAAGGGG 57.275 37.500 0.00 0.00 0.00 4.79
24 25 7.084486 CGATTTTTCTCTGGTTTCTTAAAGGG 58.916 38.462 0.00 0.00 0.00 3.95
25 26 7.649057 ACGATTTTTCTCTGGTTTCTTAAAGG 58.351 34.615 0.00 0.00 0.00 3.11
26 27 8.342634 TGACGATTTTTCTCTGGTTTCTTAAAG 58.657 33.333 0.00 0.00 0.00 1.85
27 28 8.126700 GTGACGATTTTTCTCTGGTTTCTTAAA 58.873 33.333 0.00 0.00 0.00 1.52
28 29 7.497909 AGTGACGATTTTTCTCTGGTTTCTTAA 59.502 33.333 0.00 0.00 0.00 1.85
29 30 6.990349 AGTGACGATTTTTCTCTGGTTTCTTA 59.010 34.615 0.00 0.00 0.00 2.10
30 31 5.823045 AGTGACGATTTTTCTCTGGTTTCTT 59.177 36.000 0.00 0.00 0.00 2.52
31 32 5.368989 AGTGACGATTTTTCTCTGGTTTCT 58.631 37.500 0.00 0.00 0.00 2.52
32 33 5.467063 AGAGTGACGATTTTTCTCTGGTTTC 59.533 40.000 0.00 0.00 34.74 2.78
33 34 5.368989 AGAGTGACGATTTTTCTCTGGTTT 58.631 37.500 0.00 0.00 34.74 3.27
34 35 4.962155 AGAGTGACGATTTTTCTCTGGTT 58.038 39.130 0.00 0.00 34.74 3.67
35 36 4.608948 AGAGTGACGATTTTTCTCTGGT 57.391 40.909 0.00 0.00 34.74 4.00
36 37 7.360438 CCTTTAAGAGTGACGATTTTTCTCTGG 60.360 40.741 0.00 0.00 35.94 3.86
37 38 7.171678 ACCTTTAAGAGTGACGATTTTTCTCTG 59.828 37.037 0.00 0.00 35.94 3.35
38 39 7.217906 ACCTTTAAGAGTGACGATTTTTCTCT 58.782 34.615 0.00 0.00 37.12 3.10
39 40 7.422878 ACCTTTAAGAGTGACGATTTTTCTC 57.577 36.000 0.00 0.00 0.00 2.87
40 41 9.503399 AATACCTTTAAGAGTGACGATTTTTCT 57.497 29.630 0.00 0.00 0.00 2.52
43 44 9.893305 CAAAATACCTTTAAGAGTGACGATTTT 57.107 29.630 0.00 0.00 0.00 1.82
44 45 9.280174 TCAAAATACCTTTAAGAGTGACGATTT 57.720 29.630 0.00 0.00 0.00 2.17
45 46 8.842358 TCAAAATACCTTTAAGAGTGACGATT 57.158 30.769 0.00 0.00 0.00 3.34
46 47 7.064728 GCTCAAAATACCTTTAAGAGTGACGAT 59.935 37.037 0.00 0.00 32.96 3.73
47 48 6.367969 GCTCAAAATACCTTTAAGAGTGACGA 59.632 38.462 0.00 0.00 32.96 4.20
48 49 6.369065 AGCTCAAAATACCTTTAAGAGTGACG 59.631 38.462 0.00 0.00 32.96 4.35
49 50 7.674471 AGCTCAAAATACCTTTAAGAGTGAC 57.326 36.000 0.00 0.00 32.96 3.67
50 51 7.390718 GGAAGCTCAAAATACCTTTAAGAGTGA 59.609 37.037 0.00 0.00 32.96 3.41
51 52 7.174946 TGGAAGCTCAAAATACCTTTAAGAGTG 59.825 37.037 0.00 0.00 32.96 3.51
52 53 7.175119 GTGGAAGCTCAAAATACCTTTAAGAGT 59.825 37.037 0.00 0.00 32.96 3.24
53 54 7.174946 TGTGGAAGCTCAAAATACCTTTAAGAG 59.825 37.037 0.00 0.00 33.27 2.85
54 55 7.001674 TGTGGAAGCTCAAAATACCTTTAAGA 58.998 34.615 0.00 0.00 0.00 2.10
55 56 7.214467 TGTGGAAGCTCAAAATACCTTTAAG 57.786 36.000 0.00 0.00 0.00 1.85
56 57 7.589958 TTGTGGAAGCTCAAAATACCTTTAA 57.410 32.000 0.00 0.00 0.00 1.52
57 58 7.775053 ATTGTGGAAGCTCAAAATACCTTTA 57.225 32.000 0.00 0.00 0.00 1.85
58 59 6.670695 ATTGTGGAAGCTCAAAATACCTTT 57.329 33.333 0.00 0.00 0.00 3.11
59 60 6.670695 AATTGTGGAAGCTCAAAATACCTT 57.329 33.333 0.00 0.00 0.00 3.50
60 61 6.670695 AAATTGTGGAAGCTCAAAATACCT 57.329 33.333 0.00 0.00 0.00 3.08
61 62 7.116805 CAGAAAATTGTGGAAGCTCAAAATACC 59.883 37.037 0.00 0.00 0.00 2.73
62 63 7.653311 ACAGAAAATTGTGGAAGCTCAAAATAC 59.347 33.333 0.00 0.00 0.00 1.89
63 64 7.725251 ACAGAAAATTGTGGAAGCTCAAAATA 58.275 30.769 0.00 0.00 0.00 1.40
64 65 6.585416 ACAGAAAATTGTGGAAGCTCAAAAT 58.415 32.000 0.00 0.00 0.00 1.82
65 66 5.976458 ACAGAAAATTGTGGAAGCTCAAAA 58.024 33.333 0.00 0.00 0.00 2.44
66 67 5.596836 ACAGAAAATTGTGGAAGCTCAAA 57.403 34.783 0.00 0.00 0.00 2.69
67 68 5.105392 ACAACAGAAAATTGTGGAAGCTCAA 60.105 36.000 0.00 0.00 38.84 3.02
68 69 4.402155 ACAACAGAAAATTGTGGAAGCTCA 59.598 37.500 0.00 0.00 38.84 4.26
69 70 4.936891 ACAACAGAAAATTGTGGAAGCTC 58.063 39.130 0.00 0.00 38.84 4.09
70 71 4.402155 TGACAACAGAAAATTGTGGAAGCT 59.598 37.500 0.00 0.00 40.36 3.74
71 72 4.681744 TGACAACAGAAAATTGTGGAAGC 58.318 39.130 0.00 0.00 40.36 3.86
72 73 5.519927 GGTTGACAACAGAAAATTGTGGAAG 59.480 40.000 19.58 0.00 40.36 3.46
73 74 5.415221 GGTTGACAACAGAAAATTGTGGAA 58.585 37.500 19.58 0.00 40.36 3.53
74 75 4.439426 CGGTTGACAACAGAAAATTGTGGA 60.439 41.667 19.58 0.00 40.36 4.02
75 76 3.796178 CGGTTGACAACAGAAAATTGTGG 59.204 43.478 19.58 0.00 40.36 4.17
76 77 4.667262 TCGGTTGACAACAGAAAATTGTG 58.333 39.130 17.29 0.00 40.36 3.33
77 78 4.974368 TCGGTTGACAACAGAAAATTGT 57.026 36.364 17.29 0.00 42.95 2.71
83 84 2.940410 GAGGTTTCGGTTGACAACAGAA 59.060 45.455 24.23 24.23 42.42 3.02
84 85 2.093394 TGAGGTTTCGGTTGACAACAGA 60.093 45.455 19.58 17.72 33.78 3.41
85 86 2.285083 TGAGGTTTCGGTTGACAACAG 58.715 47.619 19.58 15.66 0.00 3.16
86 87 2.404923 TGAGGTTTCGGTTGACAACA 57.595 45.000 19.58 0.00 0.00 3.33
87 88 3.982576 AATGAGGTTTCGGTTGACAAC 57.017 42.857 9.97 9.97 0.00 3.32
88 89 5.309638 TCATAATGAGGTTTCGGTTGACAA 58.690 37.500 0.00 0.00 0.00 3.18
89 90 4.900684 TCATAATGAGGTTTCGGTTGACA 58.099 39.130 0.00 0.00 0.00 3.58
90 91 5.470845 CTCATAATGAGGTTTCGGTTGAC 57.529 43.478 0.00 0.00 40.71 3.18
102 103 5.295950 CCTACAGTGCTTCCTCATAATGAG 58.704 45.833 0.00 0.00 43.91 2.90
103 104 4.443457 GCCTACAGTGCTTCCTCATAATGA 60.443 45.833 0.00 0.00 0.00 2.57
104 105 3.812053 GCCTACAGTGCTTCCTCATAATG 59.188 47.826 0.00 0.00 0.00 1.90
105 106 3.181450 GGCCTACAGTGCTTCCTCATAAT 60.181 47.826 0.00 0.00 0.00 1.28
106 107 2.170607 GGCCTACAGTGCTTCCTCATAA 59.829 50.000 0.00 0.00 0.00 1.90
107 108 1.762957 GGCCTACAGTGCTTCCTCATA 59.237 52.381 0.00 0.00 0.00 2.15
125 126 4.413495 TTCGTGTTGCTTGTTTATAGGC 57.587 40.909 0.00 0.00 0.00 3.93
144 145 6.515272 TCTATTTGGGTTGAAGCTCATTTC 57.485 37.500 0.00 0.00 0.00 2.17
157 158 4.014406 GGTCAATCGGTTTCTATTTGGGT 58.986 43.478 0.00 0.00 0.00 4.51
171 172 3.708563 ACCACTGTTTTTGGTCAATCG 57.291 42.857 0.00 0.00 44.54 3.34
180 181 7.094848 CCAAATTTTCAACTGACCACTGTTTTT 60.095 33.333 0.00 0.00 36.35 1.94
196 197 4.836825 TGTGTTTTGAGCCCAAATTTTCA 58.163 34.783 0.00 0.00 41.43 2.69
197 198 4.260743 GCTGTGTTTTGAGCCCAAATTTTC 60.261 41.667 0.00 0.00 41.43 2.29
201 202 1.761784 TGCTGTGTTTTGAGCCCAAAT 59.238 42.857 0.00 0.00 41.43 2.32
289 296 3.679502 GCCTGAAAATTCAATTTGGGTCG 59.320 43.478 0.00 0.00 36.64 4.79
351 366 4.133796 GGAAAGCCGCCATGCACC 62.134 66.667 0.00 0.00 0.00 5.01
378 393 1.227438 CACCCAAAGTCGGACGTGT 60.227 57.895 0.00 0.00 0.00 4.49
425 440 3.057019 GGCGTTATATCGAGCATGTTCA 58.943 45.455 10.36 0.00 0.00 3.18
455 470 1.382695 TGCCTGGGGACTAGTAGCC 60.383 63.158 0.00 0.00 0.00 3.93
456 471 1.823976 GTGCCTGGGGACTAGTAGC 59.176 63.158 0.00 0.00 33.56 3.58
513 528 2.818487 TATTCCCATTGCGCACGCG 61.818 57.895 11.12 3.53 45.51 6.01
532 547 2.579787 GTCGTCCTCCATGTCGCG 60.580 66.667 0.00 0.00 0.00 5.87
533 548 2.579787 CGTCGTCCTCCATGTCGC 60.580 66.667 0.00 0.00 0.00 5.19
542 557 2.034376 AGGCTGTCTCGTCGTCCT 59.966 61.111 0.00 0.00 0.00 3.85
567 582 1.394266 GGGAGGCGACCGTGGTAATA 61.394 60.000 0.00 0.00 0.00 0.98
570 585 4.682334 TGGGAGGCGACCGTGGTA 62.682 66.667 0.00 0.00 0.00 3.25
624 639 3.121030 GCTGCAGTACCAGGTGCG 61.121 66.667 16.64 0.00 42.96 5.34
786 3546 2.733218 CGCGCCTTGAAGACGTCA 60.733 61.111 19.50 0.00 0.00 4.35
1147 3907 0.321346 TTCTCAGGCTTGATGTCGCA 59.679 50.000 0.00 0.00 31.68 5.10
1695 4495 1.981312 AGAGCTCAGCGGCTTCAGA 60.981 57.895 17.77 0.00 43.20 3.27
1697 4497 2.263852 CAGAGCTCAGCGGCTTCA 59.736 61.111 17.77 0.00 43.20 3.02
1700 4500 2.104572 TTTGACAGAGCTCAGCGGCT 62.105 55.000 17.77 0.00 46.11 5.52
1704 4504 5.526846 AGCTAATTATTTGACAGAGCTCAGC 59.473 40.000 17.77 10.90 33.65 4.26
1706 4506 6.409704 ACAGCTAATTATTTGACAGAGCTCA 58.590 36.000 17.77 0.00 36.69 4.26
1708 4508 8.792830 TTAACAGCTAATTATTTGACAGAGCT 57.207 30.769 0.00 0.00 39.31 4.09
1709 4509 9.495754 CTTTAACAGCTAATTATTTGACAGAGC 57.504 33.333 0.00 0.00 0.00 4.09
1725 4525 9.245481 ACTATGTCTTCTACTACTTTAACAGCT 57.755 33.333 0.00 0.00 0.00 4.24
1726 4526 9.857957 AACTATGTCTTCTACTACTTTAACAGC 57.142 33.333 0.00 0.00 0.00 4.40
1728 4528 9.635520 GCAACTATGTCTTCTACTACTTTAACA 57.364 33.333 0.00 0.00 0.00 2.41
1729 4529 9.635520 TGCAACTATGTCTTCTACTACTTTAAC 57.364 33.333 0.00 0.00 0.00 2.01
1730 4530 9.635520 GTGCAACTATGTCTTCTACTACTTTAA 57.364 33.333 0.00 0.00 0.00 1.52
1731 4531 7.966753 CGTGCAACTATGTCTTCTACTACTTTA 59.033 37.037 0.00 0.00 31.75 1.85
1732 4532 6.807230 CGTGCAACTATGTCTTCTACTACTTT 59.193 38.462 0.00 0.00 31.75 2.66
1733 4533 6.150641 TCGTGCAACTATGTCTTCTACTACTT 59.849 38.462 0.00 0.00 31.75 2.24
1734 4534 5.646793 TCGTGCAACTATGTCTTCTACTACT 59.353 40.000 0.00 0.00 31.75 2.57
1735 4535 5.877031 TCGTGCAACTATGTCTTCTACTAC 58.123 41.667 0.00 0.00 31.75 2.73
1736 4536 5.878669 TCTCGTGCAACTATGTCTTCTACTA 59.121 40.000 0.00 0.00 31.75 1.82
1737 4537 4.700692 TCTCGTGCAACTATGTCTTCTACT 59.299 41.667 0.00 0.00 31.75 2.57
1738 4538 4.982999 TCTCGTGCAACTATGTCTTCTAC 58.017 43.478 0.00 0.00 31.75 2.59
1739 4539 5.638596 TTCTCGTGCAACTATGTCTTCTA 57.361 39.130 0.00 0.00 31.75 2.10
1740 4540 4.521130 TTCTCGTGCAACTATGTCTTCT 57.479 40.909 0.00 0.00 31.75 2.85
1741 4541 5.786401 ATTTCTCGTGCAACTATGTCTTC 57.214 39.130 0.00 0.00 31.75 2.87
1742 4542 5.292101 GCTATTTCTCGTGCAACTATGTCTT 59.708 40.000 0.00 0.00 31.75 3.01
1743 4543 4.806247 GCTATTTCTCGTGCAACTATGTCT 59.194 41.667 0.00 0.00 31.75 3.41
1744 4544 4.317418 CGCTATTTCTCGTGCAACTATGTC 60.317 45.833 0.00 0.00 31.75 3.06
1745 4545 3.551890 CGCTATTTCTCGTGCAACTATGT 59.448 43.478 0.00 0.00 31.75 2.29
1746 4546 3.796717 TCGCTATTTCTCGTGCAACTATG 59.203 43.478 0.00 0.00 31.75 2.23
1747 4547 4.041740 TCGCTATTTCTCGTGCAACTAT 57.958 40.909 0.00 0.00 31.75 2.12
1748 4548 3.435566 CTCGCTATTTCTCGTGCAACTA 58.564 45.455 0.00 0.00 31.75 2.24
1749 4549 2.263077 CTCGCTATTTCTCGTGCAACT 58.737 47.619 0.00 0.00 31.75 3.16
1750 4550 1.267087 GCTCGCTATTTCTCGTGCAAC 60.267 52.381 0.00 0.00 42.49 4.17
1751 4551 0.999406 GCTCGCTATTTCTCGTGCAA 59.001 50.000 0.00 0.00 42.49 4.08
1752 4552 2.665777 GCTCGCTATTTCTCGTGCA 58.334 52.632 0.00 0.00 42.49 4.57
1753 4553 1.212616 ATGCTCGCTATTTCTCGTGC 58.787 50.000 0.00 0.00 43.02 5.34
1754 4554 3.372060 TGTATGCTCGCTATTTCTCGTG 58.628 45.455 0.00 0.00 0.00 4.35
1755 4555 3.710326 TGTATGCTCGCTATTTCTCGT 57.290 42.857 0.00 0.00 0.00 4.18
1756 4556 4.504461 ACTTTGTATGCTCGCTATTTCTCG 59.496 41.667 0.00 0.00 0.00 4.04
1757 4557 5.975410 ACTTTGTATGCTCGCTATTTCTC 57.025 39.130 0.00 0.00 0.00 2.87
1758 4558 6.743575 AAACTTTGTATGCTCGCTATTTCT 57.256 33.333 0.00 0.00 0.00 2.52
1759 4559 7.244192 AGAAAACTTTGTATGCTCGCTATTTC 58.756 34.615 0.00 0.00 0.00 2.17
1760 4560 7.145932 AGAAAACTTTGTATGCTCGCTATTT 57.854 32.000 0.00 0.00 0.00 1.40
1761 4561 6.743575 AGAAAACTTTGTATGCTCGCTATT 57.256 33.333 0.00 0.00 0.00 1.73
1762 4562 7.042335 ACTAGAAAACTTTGTATGCTCGCTAT 58.958 34.615 0.00 0.00 0.00 2.97
1763 4563 6.395629 ACTAGAAAACTTTGTATGCTCGCTA 58.604 36.000 0.00 0.00 0.00 4.26
1764 4564 5.238583 ACTAGAAAACTTTGTATGCTCGCT 58.761 37.500 0.00 0.00 0.00 4.93
1765 4565 5.532025 ACTAGAAAACTTTGTATGCTCGC 57.468 39.130 0.00 0.00 0.00 5.03
1768 4568 9.392259 GGGTTATACTAGAAAACTTTGTATGCT 57.608 33.333 0.00 0.00 0.00 3.79
1769 4569 9.169592 TGGGTTATACTAGAAAACTTTGTATGC 57.830 33.333 0.00 0.00 0.00 3.14
1773 4573 9.449719 CATCTGGGTTATACTAGAAAACTTTGT 57.550 33.333 0.00 0.00 0.00 2.83
1774 4574 9.667107 TCATCTGGGTTATACTAGAAAACTTTG 57.333 33.333 0.00 0.00 0.00 2.77
1781 4581 9.656323 ACACTTATCATCTGGGTTATACTAGAA 57.344 33.333 0.00 0.00 0.00 2.10
1782 4582 9.298250 GACACTTATCATCTGGGTTATACTAGA 57.702 37.037 0.00 0.00 0.00 2.43
1783 4583 9.078990 TGACACTTATCATCTGGGTTATACTAG 57.921 37.037 0.00 0.00 0.00 2.57
1784 4584 8.857098 GTGACACTTATCATCTGGGTTATACTA 58.143 37.037 0.00 0.00 0.00 1.82
1785 4585 7.344612 TGTGACACTTATCATCTGGGTTATACT 59.655 37.037 7.20 0.00 0.00 2.12
1786 4586 7.438459 GTGTGACACTTATCATCTGGGTTATAC 59.562 40.741 8.76 0.00 0.00 1.47
1787 4587 7.497595 GTGTGACACTTATCATCTGGGTTATA 58.502 38.462 8.76 0.00 0.00 0.98
1788 4588 6.349300 GTGTGACACTTATCATCTGGGTTAT 58.651 40.000 8.76 0.00 0.00 1.89
1789 4589 5.623596 CGTGTGACACTTATCATCTGGGTTA 60.624 44.000 14.42 0.00 31.34 2.85
1790 4590 4.579869 GTGTGACACTTATCATCTGGGTT 58.420 43.478 8.76 0.00 0.00 4.11
1791 4591 3.368427 CGTGTGACACTTATCATCTGGGT 60.368 47.826 14.42 0.00 31.34 4.51
1792 4592 3.190079 CGTGTGACACTTATCATCTGGG 58.810 50.000 14.42 0.00 31.34 4.45
1793 4593 3.614176 CACGTGTGACACTTATCATCTGG 59.386 47.826 14.42 0.00 31.34 3.86
1794 4594 4.237724 ACACGTGTGACACTTATCATCTG 58.762 43.478 22.71 0.00 31.34 2.90
1795 4595 4.521130 ACACGTGTGACACTTATCATCT 57.479 40.909 22.71 0.00 31.34 2.90
1808 4608 4.494035 CCGATTATTTCATCCACACGTGTG 60.494 45.833 36.13 36.13 45.23 3.82
1809 4609 3.621268 CCGATTATTTCATCCACACGTGT 59.379 43.478 17.22 17.22 0.00 4.49
1810 4610 3.002246 CCCGATTATTTCATCCACACGTG 59.998 47.826 15.48 15.48 0.00 4.49
1811 4611 3.202906 CCCGATTATTTCATCCACACGT 58.797 45.455 0.00 0.00 0.00 4.49
1812 4612 3.202906 ACCCGATTATTTCATCCACACG 58.797 45.455 0.00 0.00 0.00 4.49
1813 4613 6.687081 TTTACCCGATTATTTCATCCACAC 57.313 37.500 0.00 0.00 0.00 3.82
1814 4614 9.008965 CATATTTACCCGATTATTTCATCCACA 57.991 33.333 0.00 0.00 0.00 4.17
1815 4615 9.226606 TCATATTTACCCGATTATTTCATCCAC 57.773 33.333 0.00 0.00 0.00 4.02
1816 4616 9.973661 ATCATATTTACCCGATTATTTCATCCA 57.026 29.630 0.00 0.00 0.00 3.41
1827 4627 9.832445 GTTGATGGTATATCATATTTACCCGAT 57.168 33.333 0.00 0.00 36.41 4.18
1828 4628 8.262227 GGTTGATGGTATATCATATTTACCCGA 58.738 37.037 0.00 0.00 36.41 5.14
1829 4629 8.044309 TGGTTGATGGTATATCATATTTACCCG 58.956 37.037 0.00 0.00 36.41 5.28
1830 4630 9.747898 TTGGTTGATGGTATATCATATTTACCC 57.252 33.333 0.00 0.00 36.41 3.69
1836 4636 9.507329 GTCTTGTTGGTTGATGGTATATCATAT 57.493 33.333 0.00 0.00 0.00 1.78
1837 4637 7.936847 GGTCTTGTTGGTTGATGGTATATCATA 59.063 37.037 0.00 0.00 0.00 2.15
1838 4638 6.772716 GGTCTTGTTGGTTGATGGTATATCAT 59.227 38.462 0.00 0.00 0.00 2.45
1839 4639 6.119536 GGTCTTGTTGGTTGATGGTATATCA 58.880 40.000 0.00 0.00 0.00 2.15
1840 4640 5.531287 GGGTCTTGTTGGTTGATGGTATATC 59.469 44.000 0.00 0.00 0.00 1.63
1841 4641 5.445964 GGGTCTTGTTGGTTGATGGTATAT 58.554 41.667 0.00 0.00 0.00 0.86
1842 4642 4.624364 CGGGTCTTGTTGGTTGATGGTATA 60.624 45.833 0.00 0.00 0.00 1.47
1843 4643 3.697166 GGGTCTTGTTGGTTGATGGTAT 58.303 45.455 0.00 0.00 0.00 2.73
1844 4644 2.551287 CGGGTCTTGTTGGTTGATGGTA 60.551 50.000 0.00 0.00 0.00 3.25
1845 4645 1.817740 CGGGTCTTGTTGGTTGATGGT 60.818 52.381 0.00 0.00 0.00 3.55
1846 4646 0.881118 CGGGTCTTGTTGGTTGATGG 59.119 55.000 0.00 0.00 0.00 3.51
1847 4647 1.604604 ACGGGTCTTGTTGGTTGATG 58.395 50.000 0.00 0.00 0.00 3.07
1848 4648 2.358322 AACGGGTCTTGTTGGTTGAT 57.642 45.000 0.00 0.00 0.00 2.57
1849 4649 1.746220 CAAACGGGTCTTGTTGGTTGA 59.254 47.619 0.00 0.00 0.00 3.18
1850 4650 1.202359 CCAAACGGGTCTTGTTGGTTG 60.202 52.381 0.00 0.00 0.00 3.77
1851 4651 1.107945 CCAAACGGGTCTTGTTGGTT 58.892 50.000 0.00 0.00 0.00 3.67
1852 4652 0.256464 TCCAAACGGGTCTTGTTGGT 59.744 50.000 0.00 0.00 38.11 3.67
1853 4653 1.269448 CATCCAAACGGGTCTTGTTGG 59.731 52.381 0.00 0.00 38.11 3.77
1854 4654 1.335872 GCATCCAAACGGGTCTTGTTG 60.336 52.381 0.00 0.00 38.11 3.33
1855 4655 0.958822 GCATCCAAACGGGTCTTGTT 59.041 50.000 0.00 0.00 38.11 2.83
1856 4656 0.179004 TGCATCCAAACGGGTCTTGT 60.179 50.000 0.00 0.00 38.11 3.16
1857 4657 0.958091 TTGCATCCAAACGGGTCTTG 59.042 50.000 0.00 0.00 38.11 3.02
1858 4658 1.613437 CTTTGCATCCAAACGGGTCTT 59.387 47.619 0.00 0.00 36.09 3.01
1859 4659 1.247567 CTTTGCATCCAAACGGGTCT 58.752 50.000 0.00 0.00 36.09 3.85
1860 4660 0.958822 ACTTTGCATCCAAACGGGTC 59.041 50.000 0.00 0.00 36.09 4.46
1861 4661 2.279935 TACTTTGCATCCAAACGGGT 57.720 45.000 0.00 0.00 36.09 5.28
1862 4662 3.866883 AATACTTTGCATCCAAACGGG 57.133 42.857 0.00 0.00 36.09 5.28
1863 4663 4.173256 GGAAATACTTTGCATCCAAACGG 58.827 43.478 0.00 0.00 36.09 4.44
1864 4664 4.804108 TGGAAATACTTTGCATCCAAACG 58.196 39.130 0.41 0.00 37.24 3.60
1867 4667 6.418057 ACTTTGGAAATACTTTGCATCCAA 57.582 33.333 10.85 10.85 45.72 3.53
1868 4668 7.309744 CCTTACTTTGGAAATACTTTGCATCCA 60.310 37.037 0.00 0.00 40.72 3.41
1869 4669 7.035612 CCTTACTTTGGAAATACTTTGCATCC 58.964 38.462 0.00 0.00 40.72 3.51
1870 4670 7.542130 CACCTTACTTTGGAAATACTTTGCATC 59.458 37.037 0.00 0.00 40.72 3.91
1871 4671 7.015195 ACACCTTACTTTGGAAATACTTTGCAT 59.985 33.333 0.00 0.00 40.72 3.96
1872 4672 6.322712 ACACCTTACTTTGGAAATACTTTGCA 59.677 34.615 0.00 0.00 39.30 4.08
1873 4673 6.745116 ACACCTTACTTTGGAAATACTTTGC 58.255 36.000 0.00 0.00 0.00 3.68
1915 4715 8.519799 ACTTGGTCAAACTTAGAGAAATTTGA 57.480 30.769 0.00 0.00 38.42 2.69
1916 4716 9.586435 AAACTTGGTCAAACTTAGAGAAATTTG 57.414 29.630 0.00 0.00 34.11 2.32
1922 4722 9.924650 GTCTATAAACTTGGTCAAACTTAGAGA 57.075 33.333 0.00 5.44 0.00 3.10
1923 4723 9.706691 TGTCTATAAACTTGGTCAAACTTAGAG 57.293 33.333 0.00 0.00 0.00 2.43
1970 4770 8.708378 TGATGAATCTAGTGATAATGACTTGGT 58.292 33.333 0.00 0.00 31.70 3.67
1971 4771 8.986847 GTGATGAATCTAGTGATAATGACTTGG 58.013 37.037 0.00 0.00 31.70 3.61
1972 4772 8.697960 CGTGATGAATCTAGTGATAATGACTTG 58.302 37.037 0.00 0.00 31.70 3.16
1973 4773 8.633561 TCGTGATGAATCTAGTGATAATGACTT 58.366 33.333 0.00 0.00 31.70 3.01
1974 4774 8.171164 TCGTGATGAATCTAGTGATAATGACT 57.829 34.615 0.00 0.00 31.70 3.41
1975 4775 8.695284 GTTCGTGATGAATCTAGTGATAATGAC 58.305 37.037 0.00 0.00 39.21 3.06
1976 4776 8.633561 AGTTCGTGATGAATCTAGTGATAATGA 58.366 33.333 0.00 0.00 39.21 2.57
1977 4777 8.809159 AGTTCGTGATGAATCTAGTGATAATG 57.191 34.615 0.00 0.00 39.21 1.90
1981 4781 9.823647 AAAATAGTTCGTGATGAATCTAGTGAT 57.176 29.630 0.00 0.00 39.21 3.06
1982 4782 9.653287 AAAAATAGTTCGTGATGAATCTAGTGA 57.347 29.630 0.00 0.00 39.21 3.41
2043 4843 9.685828 GTTTGACCAACTTTACAGCAAAATATA 57.314 29.630 0.00 0.00 31.92 0.86
2044 4844 8.200792 TGTTTGACCAACTTTACAGCAAAATAT 58.799 29.630 0.00 0.00 36.21 1.28
2045 4845 7.548097 TGTTTGACCAACTTTACAGCAAAATA 58.452 30.769 0.00 0.00 36.21 1.40
2046 4846 6.402222 TGTTTGACCAACTTTACAGCAAAAT 58.598 32.000 0.00 0.00 36.21 1.82
2047 4847 5.784177 TGTTTGACCAACTTTACAGCAAAA 58.216 33.333 0.00 0.00 36.21 2.44
2048 4848 5.392767 TGTTTGACCAACTTTACAGCAAA 57.607 34.783 0.00 0.00 36.21 3.68
2049 4849 5.590530 ATGTTTGACCAACTTTACAGCAA 57.409 34.783 0.00 0.00 36.21 3.91
2050 4850 5.590663 TGTATGTTTGACCAACTTTACAGCA 59.409 36.000 0.00 0.00 36.21 4.41
2051 4851 5.912955 GTGTATGTTTGACCAACTTTACAGC 59.087 40.000 6.23 0.00 36.34 4.40
2052 4852 7.022055 TGTGTATGTTTGACCAACTTTACAG 57.978 36.000 6.23 0.00 36.34 2.74
2053 4853 7.392494 TTGTGTATGTTTGACCAACTTTACA 57.608 32.000 0.00 0.00 36.21 2.41
2054 4854 9.607285 CTATTGTGTATGTTTGACCAACTTTAC 57.393 33.333 0.00 0.00 36.21 2.01
2055 4855 9.344772 ACTATTGTGTATGTTTGACCAACTTTA 57.655 29.630 0.00 0.00 36.21 1.85
2056 4856 8.232913 ACTATTGTGTATGTTTGACCAACTTT 57.767 30.769 0.00 0.00 36.21 2.66
2057 4857 7.817418 ACTATTGTGTATGTTTGACCAACTT 57.183 32.000 0.00 0.00 36.21 2.66
2058 4858 7.500892 TCAACTATTGTGTATGTTTGACCAACT 59.499 33.333 0.00 0.00 36.21 3.16
2059 4859 7.589954 GTCAACTATTGTGTATGTTTGACCAAC 59.410 37.037 0.00 0.00 35.41 3.77
2060 4860 7.500892 AGTCAACTATTGTGTATGTTTGACCAA 59.499 33.333 7.71 0.00 38.67 3.67
2061 4861 6.995686 AGTCAACTATTGTGTATGTTTGACCA 59.004 34.615 7.71 0.00 38.67 4.02
2062 4862 7.435068 AGTCAACTATTGTGTATGTTTGACC 57.565 36.000 7.71 0.00 38.67 4.02
2063 4863 9.730420 AAAAGTCAACTATTGTGTATGTTTGAC 57.270 29.630 0.00 0.00 38.43 3.18
2072 4872 9.705290 AGTTTTTCAAAAAGTCAACTATTGTGT 57.295 25.926 0.00 0.00 0.00 3.72
2099 4899 8.373220 CCTCCGTTCCTAAATATAAGGTGTATT 58.627 37.037 4.41 0.00 35.48 1.89
2100 4900 7.038516 CCCTCCGTTCCTAAATATAAGGTGTAT 60.039 40.741 4.41 0.00 35.48 2.29
2101 4901 6.268387 CCCTCCGTTCCTAAATATAAGGTGTA 59.732 42.308 4.41 0.00 35.48 2.90
2102 4902 5.071384 CCCTCCGTTCCTAAATATAAGGTGT 59.929 44.000 4.41 0.00 35.48 4.16
2103 4903 5.306160 TCCCTCCGTTCCTAAATATAAGGTG 59.694 44.000 4.41 0.00 35.48 4.00
2104 4904 5.470501 TCCCTCCGTTCCTAAATATAAGGT 58.529 41.667 4.41 0.00 35.48 3.50
2105 4905 5.543020 ACTCCCTCCGTTCCTAAATATAAGG 59.457 44.000 0.00 0.00 35.26 2.69
2106 4906 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2107 4907 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
2108 4908 9.247861 GTAATACTCCCTCCGTTCCTAAATATA 57.752 37.037 0.00 0.00 0.00 0.86
2109 4909 7.954620 AGTAATACTCCCTCCGTTCCTAAATAT 59.045 37.037 0.00 0.00 0.00 1.28
2110 4910 7.300658 AGTAATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
2111 4911 6.141790 AGTAATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
2112 4912 5.522641 AGTAATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
2113 4913 5.134725 AGTAATACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
2114 4914 4.803329 AGTAATACTCCCTCCGTTCCTA 57.197 45.455 0.00 0.00 0.00 2.94
2115 4915 3.684408 AGTAATACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
2116 4916 4.723309 TCTAGTAATACTCCCTCCGTTCC 58.277 47.826 0.00 0.00 0.00 3.62
2117 4917 6.897706 ATTCTAGTAATACTCCCTCCGTTC 57.102 41.667 0.00 0.00 0.00 3.95
2118 4918 8.168725 TGATATTCTAGTAATACTCCCTCCGTT 58.831 37.037 0.00 0.00 0.00 4.44
2119 4919 7.611079 GTGATATTCTAGTAATACTCCCTCCGT 59.389 40.741 0.00 0.00 0.00 4.69
2120 4920 7.610692 TGTGATATTCTAGTAATACTCCCTCCG 59.389 40.741 0.00 0.00 0.00 4.63
2121 4921 8.880991 TGTGATATTCTAGTAATACTCCCTCC 57.119 38.462 0.00 0.00 0.00 4.30
2163 4966 6.144078 ACGCCTCAAAGTATTTCAAAACTT 57.856 33.333 0.00 0.00 35.03 2.66
2171 4974 2.890945 AGCCAAACGCCTCAAAGTATTT 59.109 40.909 0.00 0.00 37.05 1.40
2184 4989 9.567848 AACTACAATTTTTGATATAGCCAAACG 57.432 29.630 3.42 0.00 33.74 3.60
2196 5001 9.239002 CACCGTTTATGAAACTACAATTTTTGA 57.761 29.630 1.02 0.00 39.23 2.69
2203 5008 7.444792 ACAATACCACCGTTTATGAAACTACAA 59.555 33.333 1.02 0.00 39.23 2.41
2244 5050 9.983804 CGGACCTCTTATTTTAATACTTCAAAC 57.016 33.333 0.00 0.00 0.00 2.93
2249 5055 6.060136 GGCCGGACCTCTTATTTTAATACTT 58.940 40.000 5.05 0.00 34.51 2.24
2353 5162 8.385491 AGGATATGATACTGCCATGTGATTAAA 58.615 33.333 0.00 0.00 0.00 1.52
2354 5163 7.921304 AGGATATGATACTGCCATGTGATTAA 58.079 34.615 0.00 0.00 0.00 1.40
2375 5185 9.838339 AGAATGAATCAATAACTACGAAAGGAT 57.162 29.630 0.00 0.00 0.00 3.24
2376 5186 9.667107 AAGAATGAATCAATAACTACGAAAGGA 57.333 29.630 0.00 0.00 0.00 3.36
2387 5197 9.806203 ATGCGATGAAAAAGAATGAATCAATAA 57.194 25.926 0.00 0.00 0.00 1.40
2401 5211 1.339291 TGTGGTGCATGCGATGAAAAA 59.661 42.857 14.09 0.00 0.00 1.94
2405 5222 0.248843 TAGTGTGGTGCATGCGATGA 59.751 50.000 14.09 0.00 0.00 2.92
2456 5287 1.278985 AGGAAGTTGCGGACATGATCA 59.721 47.619 0.00 0.00 0.00 2.92
2462 5293 0.246635 GAGCTAGGAAGTTGCGGACA 59.753 55.000 0.00 0.00 0.00 4.02
2485 5316 0.460284 CGCTGTACGGCCTTCTGATT 60.460 55.000 20.89 0.00 38.44 2.57
2517 5348 4.664677 GTGTGCTGACGACCGCCT 62.665 66.667 0.00 0.00 0.00 5.52
2527 5358 1.395954 CGGATCAATCAGTGTGTGCTG 59.604 52.381 0.00 0.00 37.81 4.41
2605 5761 3.304458 GGCTGGTGTTGTTTTACTGTAGC 60.304 47.826 0.00 0.00 0.00 3.58
2642 5798 9.971922 ACTTCAATTCTTTCAGTTTTAGGAATG 57.028 29.630 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.