Multiple sequence alignment - TraesCS2B01G504800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G504800 chr2B 100.000 2588 0 0 1 2588 699074731 699072144 0.000000e+00 4780.0
1 TraesCS2B01G504800 chr2B 91.964 224 14 1 1994 2217 482639797 482640016 6.950000e-81 311.0
2 TraesCS2B01G504800 chr2D 91.234 1232 68 21 741 1939 580132259 580131035 0.000000e+00 1640.0
3 TraesCS2B01G504800 chr2D 90.074 675 40 12 1 667 580134278 580133623 0.000000e+00 850.0
4 TraesCS2B01G504800 chr2D 86.784 227 23 5 1995 2218 387432293 387432071 1.990000e-61 246.0
5 TraesCS2B01G504800 chr2D 84.454 238 26 5 2307 2533 580130946 580130709 9.320000e-55 224.0
6 TraesCS2B01G504800 chr2D 86.087 115 16 0 1414 1528 580131725 580131611 9.720000e-25 124.0
7 TraesCS2B01G504800 chr2D 98.214 56 1 0 2533 2588 580130631 580130576 5.890000e-17 99.0
8 TraesCS2B01G504800 chr2A 85.205 953 80 30 737 1663 717956143 717955226 0.000000e+00 922.0
9 TraesCS2B01G504800 chr2A 90.869 679 45 5 1 671 401106772 401106103 0.000000e+00 894.0
10 TraesCS2B01G504800 chr2A 90.869 679 45 5 1 671 403070567 403069898 0.000000e+00 894.0
11 TraesCS2B01G504800 chr2A 87.810 484 30 13 237 708 717956912 717956446 8.150000e-150 540.0
12 TraesCS2B01G504800 chr2A 89.796 245 15 5 1 240 717957465 717957226 3.240000e-79 305.0
13 TraesCS2B01G504800 chr2A 86.364 220 27 1 1342 1558 717955617 717955398 1.200000e-58 237.0
14 TraesCS2B01G504800 chr2A 78.295 258 48 4 2223 2474 721592055 721592310 2.670000e-35 159.0
15 TraesCS2B01G504800 chr2A 82.540 189 21 1 1265 1453 717955541 717955365 3.450000e-34 156.0
16 TraesCS2B01G504800 chr1D 89.543 679 54 5 1 671 162192810 162192141 0.000000e+00 845.0
17 TraesCS2B01G504800 chr1D 79.091 330 59 6 2216 2536 71637518 71637190 4.340000e-53 219.0
18 TraesCS2B01G504800 chr7D 89.249 679 49 6 1 671 107520983 107520321 0.000000e+00 828.0
19 TraesCS2B01G504800 chr3A 87.647 680 66 9 1 671 125752327 125751657 0.000000e+00 774.0
20 TraesCS2B01G504800 chr1B 94.248 226 9 4 1994 2217 5865847 5866070 2.470000e-90 342.0
21 TraesCS2B01G504800 chr5D 93.833 227 11 1 1994 2217 327606396 327606622 3.190000e-89 339.0
22 TraesCS2B01G504800 chr4B 92.766 235 14 3 1990 2221 37191829 37192063 1.150000e-88 337.0
23 TraesCS2B01G504800 chr4B 93.274 223 12 1 1994 2213 143321292 143321514 2.480000e-85 326.0
24 TraesCS2B01G504800 chr4B 89.778 225 18 4 1994 2217 627223644 627223424 1.520000e-72 283.0
25 TraesCS2B01G504800 chr7A 92.920 226 13 1 1994 2216 730912717 730912492 2.480000e-85 326.0
26 TraesCS2B01G504800 chr3B 92.411 224 16 1 1994 2217 126308857 126309079 4.160000e-83 318.0
27 TraesCS2B01G504800 chr3B 79.121 91 14 4 2223 2313 7382156 7382071 1.000000e-04 58.4
28 TraesCS2B01G504800 chr6B 77.692 260 43 10 2279 2536 130164647 130164401 7.460000e-31 145.0
29 TraesCS2B01G504800 chr6B 78.095 105 18 1 2216 2315 391070376 391070272 7.730000e-06 62.1
30 TraesCS2B01G504800 chr7B 78.199 211 39 6 2266 2474 586971309 586971104 7.520000e-26 128.0
31 TraesCS2B01G504800 chr1A 81.250 96 13 1 2223 2313 71288463 71288558 3.570000e-09 73.1
32 TraesCS2B01G504800 chr4A 80.000 105 14 3 2216 2314 734892477 734892580 1.280000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G504800 chr2B 699072144 699074731 2587 True 4780.0 4780 100.0000 1 2588 1 chr2B.!!$R1 2587
1 TraesCS2B01G504800 chr2D 580130576 580134278 3702 True 587.4 1640 90.0126 1 2588 5 chr2D.!!$R2 2587
2 TraesCS2B01G504800 chr2A 401106103 401106772 669 True 894.0 894 90.8690 1 671 1 chr2A.!!$R1 670
3 TraesCS2B01G504800 chr2A 403069898 403070567 669 True 894.0 894 90.8690 1 671 1 chr2A.!!$R2 670
4 TraesCS2B01G504800 chr2A 717955226 717957465 2239 True 432.0 922 86.3430 1 1663 5 chr2A.!!$R3 1662
5 TraesCS2B01G504800 chr1D 162192141 162192810 669 True 845.0 845 89.5430 1 671 1 chr1D.!!$R2 670
6 TraesCS2B01G504800 chr7D 107520321 107520983 662 True 828.0 828 89.2490 1 671 1 chr7D.!!$R1 670
7 TraesCS2B01G504800 chr3A 125751657 125752327 670 True 774.0 774 87.6470 1 671 1 chr3A.!!$R1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 2465 0.031178 GCACCAGCACTGAAAACAGG 59.969 55.0 0.0 0.0 41.58 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 3729 0.033405 ACACTAAGCCCTCGAGCCTA 60.033 55.0 6.99 0.0 0.0 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 74 6.011481 TCCCCGGTTAAATTTAGTCATTGTT 58.989 36.000 0.00 0.00 0.00 2.83
107 109 6.127869 CCCGGATCATGTCAGTAGATTAGTAG 60.128 46.154 0.73 0.00 0.00 2.57
214 229 0.178953 AAGCTGTTCTGTTGGCCCAT 60.179 50.000 0.00 0.00 0.00 4.00
230 245 1.372582 CCATTGCAGCACGTGACTAT 58.627 50.000 22.23 7.23 0.00 2.12
231 246 2.549926 CCATTGCAGCACGTGACTATA 58.450 47.619 22.23 5.61 0.00 1.31
240 255 3.312973 AGCACGTGACTATAGCTACTGAC 59.687 47.826 22.23 0.00 33.06 3.51
248 582 3.562141 ACTATAGCTACTGACGCTCACAG 59.438 47.826 0.00 0.00 38.86 3.66
342 685 4.097589 GGAGAAAGGCAAATGATGAGGAAG 59.902 45.833 0.00 0.00 0.00 3.46
376 719 6.208644 CAGCATTATTGGGGAAACTTTATCG 58.791 40.000 0.00 0.00 0.00 2.92
486 829 3.256879 TCCTGTCAAGCTCTCAGTAACAG 59.743 47.826 10.39 0.00 34.00 3.16
487 830 3.006323 CCTGTCAAGCTCTCAGTAACAGT 59.994 47.826 10.39 0.00 32.69 3.55
488 831 4.218635 CCTGTCAAGCTCTCAGTAACAGTA 59.781 45.833 10.39 0.00 32.69 2.74
489 832 5.279006 CCTGTCAAGCTCTCAGTAACAGTAA 60.279 44.000 10.39 0.00 32.69 2.24
490 833 5.529791 TGTCAAGCTCTCAGTAACAGTAAC 58.470 41.667 0.00 0.00 0.00 2.50
491 834 5.068591 TGTCAAGCTCTCAGTAACAGTAACA 59.931 40.000 0.00 0.00 0.00 2.41
497 840 6.437793 AGCTCTCAGTAACAGTAACAGGTAAT 59.562 38.462 0.00 0.00 0.00 1.89
561 909 7.832187 TCAAATATTACCTGAACTTTAGGGGTG 59.168 37.037 4.69 0.00 39.71 4.61
594 942 5.233988 ACTTGAGAGTTGAACTGTAGCATC 58.766 41.667 0.90 0.00 29.87 3.91
631 980 2.042464 AGGTGCTCAGAACAGACTGAA 58.958 47.619 10.08 0.00 44.62 3.02
660 1009 8.982685 CACTTAGTTGTGCATATATGTTAGAGG 58.017 37.037 14.14 0.81 0.00 3.69
661 1010 8.705594 ACTTAGTTGTGCATATATGTTAGAGGT 58.294 33.333 14.14 1.34 0.00 3.85
662 1011 9.547753 CTTAGTTGTGCATATATGTTAGAGGTT 57.452 33.333 14.14 0.00 0.00 3.50
665 1014 8.705594 AGTTGTGCATATATGTTAGAGGTTAGT 58.294 33.333 14.14 0.00 0.00 2.24
666 1015 9.976511 GTTGTGCATATATGTTAGAGGTTAGTA 57.023 33.333 14.14 0.00 0.00 1.82
667 1016 9.976511 TTGTGCATATATGTTAGAGGTTAGTAC 57.023 33.333 14.14 0.00 0.00 2.73
668 1017 9.363401 TGTGCATATATGTTAGAGGTTAGTACT 57.637 33.333 14.14 0.00 0.00 2.73
722 1221 3.362986 CCGTCATTAGCACGCAATCATAC 60.363 47.826 0.00 0.00 35.87 2.39
723 1222 3.362986 CGTCATTAGCACGCAATCATACC 60.363 47.826 0.00 0.00 0.00 2.73
724 1223 3.058914 GTCATTAGCACGCAATCATACCC 60.059 47.826 0.00 0.00 0.00 3.69
725 1224 1.961793 TTAGCACGCAATCATACCCC 58.038 50.000 0.00 0.00 0.00 4.95
726 1225 0.833949 TAGCACGCAATCATACCCCA 59.166 50.000 0.00 0.00 0.00 4.96
727 1226 0.748005 AGCACGCAATCATACCCCAC 60.748 55.000 0.00 0.00 0.00 4.61
728 1227 1.724582 GCACGCAATCATACCCCACC 61.725 60.000 0.00 0.00 0.00 4.61
731 1230 1.101049 CGCAATCATACCCCACCACC 61.101 60.000 0.00 0.00 0.00 4.61
732 1231 0.033601 GCAATCATACCCCACCACCA 60.034 55.000 0.00 0.00 0.00 4.17
733 1232 1.411501 GCAATCATACCCCACCACCAT 60.412 52.381 0.00 0.00 0.00 3.55
734 1233 2.586425 CAATCATACCCCACCACCATC 58.414 52.381 0.00 0.00 0.00 3.51
735 1234 1.149101 ATCATACCCCACCACCATCC 58.851 55.000 0.00 0.00 0.00 3.51
736 1235 0.991355 TCATACCCCACCACCATCCC 60.991 60.000 0.00 0.00 0.00 3.85
737 1236 0.993509 CATACCCCACCACCATCCCT 60.994 60.000 0.00 0.00 0.00 4.20
748 2396 2.578714 CCATCCCTCCCTCGCTAGC 61.579 68.421 4.06 4.06 0.00 3.42
809 2465 0.031178 GCACCAGCACTGAAAACAGG 59.969 55.000 0.00 0.00 41.58 4.00
841 2497 4.748144 CCAAGTGCCCCCTGCTCC 62.748 72.222 0.00 0.00 42.00 4.70
866 2536 1.375326 GGCTGGACCCGTTCTTCTT 59.625 57.895 0.00 0.00 0.00 2.52
873 2543 2.563620 GGACCCGTTCTTCTTTCTCTCT 59.436 50.000 0.00 0.00 0.00 3.10
897 2567 2.581409 GTGCGCCATTGCTGCATC 60.581 61.111 4.18 0.00 44.42 3.91
901 2571 1.298116 CGCCATTGCTGCATCTTCG 60.298 57.895 1.84 1.80 34.43 3.79
902 2572 1.708193 CGCCATTGCTGCATCTTCGA 61.708 55.000 1.84 0.00 34.43 3.71
903 2573 0.248377 GCCATTGCTGCATCTTCGAC 60.248 55.000 1.84 0.00 33.53 4.20
904 2574 1.376543 CCATTGCTGCATCTTCGACT 58.623 50.000 1.84 0.00 0.00 4.18
905 2575 1.063616 CCATTGCTGCATCTTCGACTG 59.936 52.381 1.84 0.00 0.00 3.51
906 2576 2.004733 CATTGCTGCATCTTCGACTGA 58.995 47.619 1.84 0.00 0.00 3.41
907 2577 1.718396 TTGCTGCATCTTCGACTGAG 58.282 50.000 1.84 0.00 0.00 3.35
908 2578 0.890683 TGCTGCATCTTCGACTGAGA 59.109 50.000 0.00 0.00 0.00 3.27
909 2579 1.276415 GCTGCATCTTCGACTGAGAC 58.724 55.000 0.00 0.00 0.00 3.36
910 2580 1.135141 GCTGCATCTTCGACTGAGACT 60.135 52.381 0.00 0.00 0.00 3.24
914 2584 2.421775 GCATCTTCGACTGAGACTCTGA 59.578 50.000 15.53 0.46 0.00 3.27
918 2588 3.007506 TCTTCGACTGAGACTCTGAGAGT 59.992 47.826 16.14 16.14 46.42 3.24
938 2608 3.090037 GTGAGTGGTAGCTGGAGAGTAA 58.910 50.000 0.00 0.00 0.00 2.24
939 2609 3.090037 TGAGTGGTAGCTGGAGAGTAAC 58.910 50.000 0.00 0.00 0.00 2.50
968 2638 0.109365 CACTGACACAGCGAGAGGAG 60.109 60.000 0.00 0.00 34.37 3.69
1362 3048 3.319198 GGGGTCGCTTCCTCCACA 61.319 66.667 0.00 0.00 0.00 4.17
1620 3313 4.956700 TGGTTGATTATTCTCTCTCGAGGT 59.043 41.667 13.56 0.00 37.86 3.85
1725 3429 9.924650 CTAACCTCAACACTAGTACTGTAATTT 57.075 33.333 5.39 0.00 0.00 1.82
1818 3523 2.352715 GGAGGCTTTAATTTTGCTGCGT 60.353 45.455 0.00 0.00 0.00 5.24
1820 3525 1.126662 GGCTTTAATTTTGCTGCGTGC 59.873 47.619 0.00 0.00 43.25 5.34
1822 3527 2.159934 GCTTTAATTTTGCTGCGTGCTG 60.160 45.455 0.00 0.00 43.37 4.41
1860 3565 3.740397 CTGTCGGTGCCGGTCGTA 61.740 66.667 10.94 0.00 40.25 3.43
1879 3584 6.261603 GGTCGTAGGGTGAATTAATTAAAGGG 59.738 42.308 1.21 0.00 0.00 3.95
1883 3588 8.741841 CGTAGGGTGAATTAATTAAAGGGAAAA 58.258 33.333 1.21 0.00 0.00 2.29
1912 3621 7.734924 ATTTTCCCTCAATTTTCTTCAAAGC 57.265 32.000 0.00 0.00 0.00 3.51
1914 3623 6.423776 TTCCCTCAATTTTCTTCAAAGCAT 57.576 33.333 0.00 0.00 0.00 3.79
1916 3625 7.161773 TCCCTCAATTTTCTTCAAAGCATAG 57.838 36.000 0.00 0.00 0.00 2.23
1918 3627 7.121759 TCCCTCAATTTTCTTCAAAGCATAGAG 59.878 37.037 0.00 0.00 0.00 2.43
1922 3631 9.234827 TCAATTTTCTTCAAAGCATAGAGATGA 57.765 29.630 0.00 0.00 34.73 2.92
1925 3634 7.798596 TTTCTTCAAAGCATAGAGATGATCC 57.201 36.000 0.00 0.00 34.73 3.36
1940 3649 7.227992 GAGATGATCCTTCAACTCTAAAACG 57.772 40.000 6.13 0.00 44.29 3.60
1943 3652 6.097915 TGATCCTTCAACTCTAAAACGAGT 57.902 37.500 0.00 0.00 45.73 4.18
1945 3654 7.663827 TGATCCTTCAACTCTAAAACGAGTAA 58.336 34.615 0.00 0.00 43.14 2.24
1946 3655 7.597743 TGATCCTTCAACTCTAAAACGAGTAAC 59.402 37.037 0.00 0.00 43.14 2.50
1948 3657 7.144000 TCCTTCAACTCTAAAACGAGTAACTC 58.856 38.462 0.00 0.00 43.14 3.01
1949 3658 7.014038 TCCTTCAACTCTAAAACGAGTAACTCT 59.986 37.037 0.00 0.00 43.14 3.24
1950 3659 8.295288 CCTTCAACTCTAAAACGAGTAACTCTA 58.705 37.037 0.00 0.00 43.14 2.43
1953 3662 9.674824 TCAACTCTAAAACGAGTAACTCTAAAG 57.325 33.333 0.00 0.00 43.14 1.85
1954 3663 8.426251 CAACTCTAAAACGAGTAACTCTAAAGC 58.574 37.037 0.00 0.00 43.14 3.51
1955 3664 7.655490 ACTCTAAAACGAGTAACTCTAAAGCA 58.345 34.615 0.00 0.00 42.19 3.91
1956 3665 8.305317 ACTCTAAAACGAGTAACTCTAAAGCAT 58.695 33.333 0.00 0.00 42.19 3.79
1957 3666 9.784680 CTCTAAAACGAGTAACTCTAAAGCATA 57.215 33.333 0.00 0.00 0.00 3.14
1958 3667 9.784680 TCTAAAACGAGTAACTCTAAAGCATAG 57.215 33.333 0.00 0.00 0.00 2.23
1959 3668 9.784680 CTAAAACGAGTAACTCTAAAGCATAGA 57.215 33.333 0.00 0.00 0.00 1.98
1961 3670 9.654663 AAAACGAGTAACTCTAAAGCATAGAAT 57.345 29.630 0.00 0.00 0.00 2.40
1962 3671 8.635877 AACGAGTAACTCTAAAGCATAGAATG 57.364 34.615 0.00 0.00 0.00 2.67
1963 3672 7.997482 ACGAGTAACTCTAAAGCATAGAATGA 58.003 34.615 0.00 0.00 0.00 2.57
1964 3673 8.634444 ACGAGTAACTCTAAAGCATAGAATGAT 58.366 33.333 0.00 0.00 0.00 2.45
1965 3674 9.469807 CGAGTAACTCTAAAGCATAGAATGATT 57.530 33.333 0.00 0.00 41.23 2.57
1970 3679 8.586570 ACTCTAAAGCATAGAATGATTCTTCG 57.413 34.615 13.54 6.13 38.02 3.79
1971 3680 8.417106 ACTCTAAAGCATAGAATGATTCTTCGA 58.583 33.333 13.54 0.00 38.02 3.71
1972 3681 9.254133 CTCTAAAGCATAGAATGATTCTTCGAA 57.746 33.333 13.54 0.00 38.02 3.71
1973 3682 9.254133 TCTAAAGCATAGAATGATTCTTCGAAG 57.746 33.333 19.35 19.35 38.02 3.79
1974 3683 5.921004 AGCATAGAATGATTCTTCGAAGC 57.079 39.130 20.56 10.17 41.14 3.86
1975 3684 5.363101 AGCATAGAATGATTCTTCGAAGCA 58.637 37.500 20.56 10.50 41.14 3.91
1976 3685 5.996513 AGCATAGAATGATTCTTCGAAGCAT 59.003 36.000 20.56 15.44 41.14 3.79
1977 3686 7.157347 AGCATAGAATGATTCTTCGAAGCATA 58.843 34.615 20.56 8.46 41.14 3.14
1978 3687 7.331440 AGCATAGAATGATTCTTCGAAGCATAG 59.669 37.037 20.56 0.00 41.14 2.23
1979 3688 7.330454 GCATAGAATGATTCTTCGAAGCATAGA 59.670 37.037 20.56 5.92 41.14 1.98
1980 3689 9.201127 CATAGAATGATTCTTCGAAGCATAGAA 57.799 33.333 20.56 9.59 41.14 2.10
1981 3690 9.770097 ATAGAATGATTCTTCGAAGCATAGAAA 57.230 29.630 20.56 8.65 41.14 2.52
1982 3691 8.674263 AGAATGATTCTTCGAAGCATAGAAAT 57.326 30.769 20.56 13.06 36.36 2.17
1983 3692 8.557864 AGAATGATTCTTCGAAGCATAGAAATG 58.442 33.333 20.56 0.00 36.36 2.32
1984 3693 8.442632 AATGATTCTTCGAAGCATAGAAATGA 57.557 30.769 20.56 8.28 34.84 2.57
1985 3694 8.618702 ATGATTCTTCGAAGCATAGAAATGAT 57.381 30.769 20.56 10.14 34.84 2.45
1986 3695 8.081208 TGATTCTTCGAAGCATAGAAATGATC 57.919 34.615 20.56 4.55 34.84 2.92
1987 3696 6.851222 TTCTTCGAAGCATAGAAATGATCC 57.149 37.500 20.56 0.00 34.84 3.36
1988 3697 6.166984 TCTTCGAAGCATAGAAATGATCCT 57.833 37.500 20.56 0.00 34.84 3.24
1989 3698 6.586344 TCTTCGAAGCATAGAAATGATCCTT 58.414 36.000 20.56 0.00 34.84 3.36
1990 3699 6.703607 TCTTCGAAGCATAGAAATGATCCTTC 59.296 38.462 20.56 0.00 34.84 3.46
1991 3700 5.917462 TCGAAGCATAGAAATGATCCTTCA 58.083 37.500 7.24 0.00 33.09 3.02
1992 3701 6.348498 TCGAAGCATAGAAATGATCCTTCAA 58.652 36.000 7.24 0.00 33.09 2.69
1993 3702 6.258727 TCGAAGCATAGAAATGATCCTTCAAC 59.741 38.462 7.24 0.00 33.09 3.18
1994 3703 6.259608 CGAAGCATAGAAATGATCCTTCAACT 59.740 38.462 7.24 0.00 33.09 3.16
1995 3704 7.518052 CGAAGCATAGAAATGATCCTTCAACTC 60.518 40.741 7.24 0.00 33.09 3.01
1996 3705 5.757320 AGCATAGAAATGATCCTTCAACTCG 59.243 40.000 7.24 0.00 34.96 4.18
1997 3706 5.525378 GCATAGAAATGATCCTTCAACTCGT 59.475 40.000 7.24 0.00 34.96 4.18
1998 3707 6.510799 GCATAGAAATGATCCTTCAACTCGTG 60.511 42.308 7.24 0.00 34.96 4.35
1999 3708 4.899502 AGAAATGATCCTTCAACTCGTGT 58.100 39.130 7.24 0.00 34.96 4.49
2000 3709 4.692625 AGAAATGATCCTTCAACTCGTGTG 59.307 41.667 7.24 0.00 34.96 3.82
2001 3710 3.961480 ATGATCCTTCAACTCGTGTGA 57.039 42.857 0.00 0.00 34.96 3.58
2002 3711 3.854666 ATGATCCTTCAACTCGTGTGAG 58.145 45.455 0.00 0.00 39.90 3.51
2003 3712 3.368843 ATGATCCTTCAACTCGTGTGAGG 60.369 47.826 8.04 8.04 39.02 3.86
2004 3713 1.410004 TCCTTCAACTCGTGTGAGGT 58.590 50.000 12.04 0.00 45.22 3.85
2010 3719 4.758692 CTCGTGTGAGGTGTTGCT 57.241 55.556 0.00 0.00 38.65 3.91
2011 3720 3.886044 CTCGTGTGAGGTGTTGCTA 57.114 52.632 0.00 0.00 38.65 3.49
2012 3721 1.419374 CTCGTGTGAGGTGTTGCTAC 58.581 55.000 0.00 0.00 38.65 3.58
2013 3722 0.318360 TCGTGTGAGGTGTTGCTACG 60.318 55.000 0.00 0.00 0.00 3.51
2014 3723 0.596600 CGTGTGAGGTGTTGCTACGT 60.597 55.000 0.00 0.00 0.00 3.57
2015 3724 1.335233 CGTGTGAGGTGTTGCTACGTA 60.335 52.381 0.00 0.00 0.00 3.57
2016 3725 2.325761 GTGTGAGGTGTTGCTACGTAG 58.674 52.381 18.47 18.47 0.00 3.51
2017 3726 2.030540 GTGTGAGGTGTTGCTACGTAGA 60.031 50.000 26.53 8.59 0.00 2.59
2018 3727 2.624364 TGTGAGGTGTTGCTACGTAGAA 59.376 45.455 26.53 13.82 0.00 2.10
2019 3728 3.257375 TGTGAGGTGTTGCTACGTAGAAT 59.743 43.478 26.53 0.00 0.00 2.40
2020 3729 4.243270 GTGAGGTGTTGCTACGTAGAATT 58.757 43.478 26.53 3.58 0.00 2.17
2021 3730 5.047872 TGTGAGGTGTTGCTACGTAGAATTA 60.048 40.000 26.53 4.99 0.00 1.40
2022 3731 5.515626 GTGAGGTGTTGCTACGTAGAATTAG 59.484 44.000 26.53 1.00 0.00 1.73
2023 3732 5.007385 AGGTGTTGCTACGTAGAATTAGG 57.993 43.478 26.53 0.00 0.00 2.69
2024 3733 3.554731 GGTGTTGCTACGTAGAATTAGGC 59.445 47.826 26.53 10.15 0.00 3.93
2025 3734 4.430908 GTGTTGCTACGTAGAATTAGGCT 58.569 43.478 26.53 0.00 0.00 4.58
2026 3735 4.503370 GTGTTGCTACGTAGAATTAGGCTC 59.497 45.833 26.53 5.50 0.00 4.70
2027 3736 3.620929 TGCTACGTAGAATTAGGCTCG 57.379 47.619 26.53 0.00 0.00 5.03
2028 3737 3.208594 TGCTACGTAGAATTAGGCTCGA 58.791 45.455 26.53 0.00 0.00 4.04
2029 3738 3.250280 TGCTACGTAGAATTAGGCTCGAG 59.750 47.826 26.53 8.45 0.00 4.04
2030 3739 3.365164 GCTACGTAGAATTAGGCTCGAGG 60.365 52.174 26.53 0.00 0.00 4.63
2031 3740 1.955080 ACGTAGAATTAGGCTCGAGGG 59.045 52.381 15.58 0.00 0.00 4.30
2032 3741 1.336056 CGTAGAATTAGGCTCGAGGGC 60.336 57.143 15.58 7.43 41.20 5.19
2039 3748 3.300013 GGCTCGAGGGCTTAGTGT 58.700 61.111 15.58 0.00 37.53 3.55
2040 3749 1.153549 GGCTCGAGGGCTTAGTGTG 60.154 63.158 15.58 0.00 37.53 3.82
2041 3750 1.153549 GCTCGAGGGCTTAGTGTGG 60.154 63.158 15.58 0.00 0.00 4.17
2042 3751 1.517832 CTCGAGGGCTTAGTGTGGG 59.482 63.158 3.91 0.00 0.00 4.61
2043 3752 1.229082 TCGAGGGCTTAGTGTGGGT 60.229 57.895 0.00 0.00 0.00 4.51
2044 3753 1.079127 CGAGGGCTTAGTGTGGGTG 60.079 63.158 0.00 0.00 0.00 4.61
2045 3754 1.827399 CGAGGGCTTAGTGTGGGTGT 61.827 60.000 0.00 0.00 0.00 4.16
2046 3755 0.036294 GAGGGCTTAGTGTGGGTGTC 60.036 60.000 0.00 0.00 0.00 3.67
2047 3756 1.375523 GGGCTTAGTGTGGGTGTCG 60.376 63.158 0.00 0.00 0.00 4.35
2048 3757 1.375523 GGCTTAGTGTGGGTGTCGG 60.376 63.158 0.00 0.00 0.00 4.79
2049 3758 2.033194 GCTTAGTGTGGGTGTCGGC 61.033 63.158 0.00 0.00 0.00 5.54
2050 3759 1.369692 CTTAGTGTGGGTGTCGGCA 59.630 57.895 0.00 0.00 0.00 5.69
2051 3760 0.670546 CTTAGTGTGGGTGTCGGCAG 60.671 60.000 0.00 0.00 0.00 4.85
2052 3761 2.107041 TTAGTGTGGGTGTCGGCAGG 62.107 60.000 0.00 0.00 0.00 4.85
2057 3766 4.468689 GGGTGTCGGCAGGCCTAC 62.469 72.222 3.98 0.00 33.02 3.18
2058 3767 3.391382 GGTGTCGGCAGGCCTACT 61.391 66.667 3.98 0.00 33.51 2.57
2068 3777 3.761078 AGGCCTACTGAAAGGGGAT 57.239 52.632 1.29 0.00 39.30 3.85
2069 3778 1.216990 AGGCCTACTGAAAGGGGATG 58.783 55.000 1.29 0.00 39.30 3.51
2070 3779 0.919710 GGCCTACTGAAAGGGGATGT 59.080 55.000 0.00 0.00 39.30 3.06
2071 3780 2.124411 GGCCTACTGAAAGGGGATGTA 58.876 52.381 0.00 0.00 39.30 2.29
2072 3781 2.508300 GGCCTACTGAAAGGGGATGTAA 59.492 50.000 0.00 0.00 39.30 2.41
2073 3782 3.433740 GGCCTACTGAAAGGGGATGTAAG 60.434 52.174 0.00 0.00 39.30 2.34
2074 3783 3.809905 CCTACTGAAAGGGGATGTAAGC 58.190 50.000 0.00 0.00 39.30 3.09
2075 3784 2.808906 ACTGAAAGGGGATGTAAGCC 57.191 50.000 0.00 0.00 39.06 4.35
2086 3795 4.505324 GGATGTAAGCCCCTTCTTTAGT 57.495 45.455 0.00 0.00 35.29 2.24
2087 3796 4.856509 GGATGTAAGCCCCTTCTTTAGTT 58.143 43.478 0.00 0.00 35.29 2.24
2088 3797 4.640647 GGATGTAAGCCCCTTCTTTAGTTG 59.359 45.833 0.00 0.00 35.29 3.16
2089 3798 4.028993 TGTAAGCCCCTTCTTTAGTTGG 57.971 45.455 0.00 0.00 0.00 3.77
2090 3799 1.924731 AAGCCCCTTCTTTAGTTGGC 58.075 50.000 0.00 0.00 39.16 4.52
2091 3800 0.039764 AGCCCCTTCTTTAGTTGGCC 59.960 55.000 0.00 0.00 39.51 5.36
2092 3801 1.313091 GCCCCTTCTTTAGTTGGCCG 61.313 60.000 0.00 0.00 35.10 6.13
2093 3802 0.679960 CCCCTTCTTTAGTTGGCCGG 60.680 60.000 0.00 0.00 0.00 6.13
2094 3803 1.313091 CCCTTCTTTAGTTGGCCGGC 61.313 60.000 21.18 21.18 0.00 6.13
2095 3804 0.608035 CCTTCTTTAGTTGGCCGGCA 60.608 55.000 30.85 12.04 0.00 5.69
2096 3805 0.521735 CTTCTTTAGTTGGCCGGCAC 59.478 55.000 30.85 19.41 0.00 5.01
2115 3824 3.204306 ACGGTGATATAGACGTGAGGA 57.796 47.619 0.00 0.00 38.24 3.71
2116 3825 3.139850 ACGGTGATATAGACGTGAGGAG 58.860 50.000 0.00 0.00 38.24 3.69
2117 3826 3.139850 CGGTGATATAGACGTGAGGAGT 58.860 50.000 0.00 0.00 0.00 3.85
2118 3827 4.202295 ACGGTGATATAGACGTGAGGAGTA 60.202 45.833 0.00 0.00 38.24 2.59
2119 3828 4.389382 CGGTGATATAGACGTGAGGAGTAG 59.611 50.000 0.00 0.00 0.00 2.57
2120 3829 4.154556 GGTGATATAGACGTGAGGAGTAGC 59.845 50.000 0.00 0.00 0.00 3.58
2121 3830 3.995048 TGATATAGACGTGAGGAGTAGCG 59.005 47.826 0.00 0.00 0.00 4.26
2122 3831 2.328819 ATAGACGTGAGGAGTAGCGT 57.671 50.000 0.00 0.00 40.44 5.07
2123 3832 2.967599 TAGACGTGAGGAGTAGCGTA 57.032 50.000 0.00 0.00 37.71 4.42
2124 3833 1.367659 AGACGTGAGGAGTAGCGTAC 58.632 55.000 0.00 0.00 37.71 3.67
2125 3834 1.066286 AGACGTGAGGAGTAGCGTACT 60.066 52.381 0.00 0.00 42.86 2.73
2126 3835 1.062294 GACGTGAGGAGTAGCGTACTG 59.938 57.143 0.00 0.00 39.59 2.74
2127 3836 1.085091 CGTGAGGAGTAGCGTACTGT 58.915 55.000 2.96 0.00 39.59 3.55
2128 3837 2.274437 CGTGAGGAGTAGCGTACTGTA 58.726 52.381 2.96 0.00 39.59 2.74
2129 3838 2.674852 CGTGAGGAGTAGCGTACTGTAA 59.325 50.000 2.96 0.00 39.59 2.41
2130 3839 3.311871 CGTGAGGAGTAGCGTACTGTAAT 59.688 47.826 2.96 0.00 39.59 1.89
2131 3840 4.201891 CGTGAGGAGTAGCGTACTGTAATT 60.202 45.833 2.96 0.00 39.59 1.40
2132 3841 5.007039 CGTGAGGAGTAGCGTACTGTAATTA 59.993 44.000 2.96 0.00 39.59 1.40
2133 3842 6.457392 CGTGAGGAGTAGCGTACTGTAATTAA 60.457 42.308 2.96 0.00 39.59 1.40
2134 3843 7.253422 GTGAGGAGTAGCGTACTGTAATTAAA 58.747 38.462 2.96 0.00 39.59 1.52
2135 3844 7.219726 GTGAGGAGTAGCGTACTGTAATTAAAC 59.780 40.741 2.96 0.00 39.59 2.01
2136 3845 7.094248 TGAGGAGTAGCGTACTGTAATTAAACA 60.094 37.037 2.96 0.00 39.59 2.83
2137 3846 7.779073 AGGAGTAGCGTACTGTAATTAAACAT 58.221 34.615 2.96 0.00 39.59 2.71
2138 3847 7.919621 AGGAGTAGCGTACTGTAATTAAACATC 59.080 37.037 2.96 0.00 39.59 3.06
2139 3848 7.096722 GGAGTAGCGTACTGTAATTAAACATCG 60.097 40.741 2.96 0.00 39.59 3.84
2140 3849 7.253422 AGTAGCGTACTGTAATTAAACATCGT 58.747 34.615 0.00 0.00 37.69 3.73
2141 3850 8.397906 AGTAGCGTACTGTAATTAAACATCGTA 58.602 33.333 0.00 0.00 37.69 3.43
2142 3851 7.441878 AGCGTACTGTAATTAAACATCGTAC 57.558 36.000 0.00 0.00 32.11 3.67
2143 3852 7.253422 AGCGTACTGTAATTAAACATCGTACT 58.747 34.615 8.26 0.00 32.75 2.73
2144 3853 8.397906 AGCGTACTGTAATTAAACATCGTACTA 58.602 33.333 8.26 0.00 32.75 1.82
2145 3854 9.173939 GCGTACTGTAATTAAACATCGTACTAT 57.826 33.333 8.26 0.00 32.75 2.12
2149 3858 9.309516 ACTGTAATTAAACATCGTACTATGGTG 57.690 33.333 11.65 0.00 0.00 4.17
2150 3859 8.651391 TGTAATTAAACATCGTACTATGGTGG 57.349 34.615 11.65 0.00 0.00 4.61
2151 3860 8.476447 TGTAATTAAACATCGTACTATGGTGGA 58.524 33.333 11.65 0.00 0.00 4.02
2152 3861 8.975439 GTAATTAAACATCGTACTATGGTGGAG 58.025 37.037 11.65 0.00 0.00 3.86
2153 3862 4.402056 AAACATCGTACTATGGTGGAGG 57.598 45.455 11.65 0.00 0.00 4.30
2154 3863 1.687123 ACATCGTACTATGGTGGAGGC 59.313 52.381 11.65 0.00 0.00 4.70
2155 3864 1.686587 CATCGTACTATGGTGGAGGCA 59.313 52.381 0.00 0.00 0.00 4.75
2156 3865 2.082140 TCGTACTATGGTGGAGGCAT 57.918 50.000 0.00 0.00 0.00 4.40
2157 3866 2.394632 TCGTACTATGGTGGAGGCATT 58.605 47.619 0.00 0.00 0.00 3.56
2158 3867 2.364324 TCGTACTATGGTGGAGGCATTC 59.636 50.000 0.00 0.00 0.00 2.67
2159 3868 2.365617 CGTACTATGGTGGAGGCATTCT 59.634 50.000 0.00 0.00 0.00 2.40
2160 3869 3.181465 CGTACTATGGTGGAGGCATTCTT 60.181 47.826 0.00 0.00 0.00 2.52
2161 3870 4.683400 CGTACTATGGTGGAGGCATTCTTT 60.683 45.833 0.00 0.00 0.00 2.52
2162 3871 4.322057 ACTATGGTGGAGGCATTCTTTT 57.678 40.909 0.00 0.00 0.00 2.27
2163 3872 4.019174 ACTATGGTGGAGGCATTCTTTTG 58.981 43.478 0.00 0.00 0.00 2.44
2164 3873 0.968405 TGGTGGAGGCATTCTTTTGC 59.032 50.000 0.00 0.00 42.01 3.68
2173 3882 3.949842 GCATTCTTTTGCCCTTCTTCT 57.050 42.857 0.00 0.00 36.60 2.85
2174 3883 4.263018 GCATTCTTTTGCCCTTCTTCTT 57.737 40.909 0.00 0.00 36.60 2.52
2175 3884 4.635223 GCATTCTTTTGCCCTTCTTCTTT 58.365 39.130 0.00 0.00 36.60 2.52
2176 3885 5.783111 GCATTCTTTTGCCCTTCTTCTTTA 58.217 37.500 0.00 0.00 36.60 1.85
2177 3886 6.223120 GCATTCTTTTGCCCTTCTTCTTTAA 58.777 36.000 0.00 0.00 36.60 1.52
2178 3887 6.875726 GCATTCTTTTGCCCTTCTTCTTTAAT 59.124 34.615 0.00 0.00 36.60 1.40
2179 3888 8.034804 GCATTCTTTTGCCCTTCTTCTTTAATA 58.965 33.333 0.00 0.00 36.60 0.98
2266 3975 9.308318 CTCTTAGCTTCTTAAACCTGATAACTC 57.692 37.037 0.00 0.00 0.00 3.01
2267 3976 8.258708 TCTTAGCTTCTTAAACCTGATAACTCC 58.741 37.037 0.00 0.00 0.00 3.85
2268 3977 5.746284 AGCTTCTTAAACCTGATAACTCCC 58.254 41.667 0.00 0.00 0.00 4.30
2269 3978 5.489278 AGCTTCTTAAACCTGATAACTCCCT 59.511 40.000 0.00 0.00 0.00 4.20
2270 3979 5.818336 GCTTCTTAAACCTGATAACTCCCTC 59.182 44.000 0.00 0.00 0.00 4.30
2271 3980 5.593679 TCTTAAACCTGATAACTCCCTCG 57.406 43.478 0.00 0.00 0.00 4.63
2272 3981 5.021458 TCTTAAACCTGATAACTCCCTCGT 58.979 41.667 0.00 0.00 0.00 4.18
2274 3983 1.777941 ACCTGATAACTCCCTCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
2276 3985 0.669077 CTGATAACTCCCTCGTCCCG 59.331 60.000 0.00 0.00 0.00 5.14
2277 3986 1.363080 GATAACTCCCTCGTCCCGC 59.637 63.158 0.00 0.00 0.00 6.13
2279 3988 0.686769 ATAACTCCCTCGTCCCGCTT 60.687 55.000 0.00 0.00 0.00 4.68
2280 3989 0.901580 TAACTCCCTCGTCCCGCTTT 60.902 55.000 0.00 0.00 0.00 3.51
2281 3990 0.901580 AACTCCCTCGTCCCGCTTTA 60.902 55.000 0.00 0.00 0.00 1.85
2283 3992 0.179108 CTCCCTCGTCCCGCTTTAAG 60.179 60.000 0.00 0.00 0.00 1.85
2285 3994 0.739813 CCCTCGTCCCGCTTTAAGTG 60.740 60.000 0.00 0.00 0.00 3.16
2286 3995 0.739813 CCTCGTCCCGCTTTAAGTGG 60.740 60.000 16.96 16.96 45.32 4.00
2287 3996 0.037605 CTCGTCCCGCTTTAAGTGGT 60.038 55.000 21.29 0.00 44.26 4.16
2288 3997 0.393820 TCGTCCCGCTTTAAGTGGTT 59.606 50.000 21.29 0.00 44.26 3.67
2289 3998 1.202675 TCGTCCCGCTTTAAGTGGTTT 60.203 47.619 21.29 0.00 44.26 3.27
2290 3999 1.605232 CGTCCCGCTTTAAGTGGTTTT 59.395 47.619 21.29 0.00 44.26 2.43
2291 4000 2.603652 CGTCCCGCTTTAAGTGGTTTTG 60.604 50.000 21.29 7.82 44.26 2.44
2292 4001 2.359848 GTCCCGCTTTAAGTGGTTTTGT 59.640 45.455 21.29 0.00 44.26 2.83
2293 4002 3.025262 TCCCGCTTTAAGTGGTTTTGTT 58.975 40.909 21.29 0.00 44.26 2.83
2294 4003 3.120041 CCCGCTTTAAGTGGTTTTGTTG 58.880 45.455 21.29 2.54 44.26 3.33
2295 4004 3.181485 CCCGCTTTAAGTGGTTTTGTTGA 60.181 43.478 21.29 0.00 44.26 3.18
2296 4005 4.500716 CCCGCTTTAAGTGGTTTTGTTGAT 60.501 41.667 21.29 0.00 44.26 2.57
2297 4006 4.444056 CCGCTTTAAGTGGTTTTGTTGATG 59.556 41.667 15.80 0.00 40.92 3.07
2298 4007 5.277825 CGCTTTAAGTGGTTTTGTTGATGA 58.722 37.500 0.00 0.00 0.00 2.92
2299 4008 5.173131 CGCTTTAAGTGGTTTTGTTGATGAC 59.827 40.000 0.00 0.00 0.00 3.06
2300 4009 5.173131 GCTTTAAGTGGTTTTGTTGATGACG 59.827 40.000 0.00 0.00 0.00 4.35
2301 4010 5.821516 TTAAGTGGTTTTGTTGATGACGT 57.178 34.783 0.00 0.00 0.00 4.34
2302 4011 3.691049 AGTGGTTTTGTTGATGACGTG 57.309 42.857 0.00 0.00 0.00 4.49
2303 4012 2.357637 AGTGGTTTTGTTGATGACGTGG 59.642 45.455 0.00 0.00 0.00 4.94
2304 4013 1.066303 TGGTTTTGTTGATGACGTGGC 59.934 47.619 0.00 0.00 0.00 5.01
2305 4014 1.066303 GGTTTTGTTGATGACGTGGCA 59.934 47.619 0.00 0.00 0.00 4.92
2313 4022 1.959985 TGATGACGTGGCATGGTTTTT 59.040 42.857 12.05 0.00 0.00 1.94
2323 4032 2.030981 GGCATGGTTTTTGTTGGCATTG 60.031 45.455 0.00 0.00 35.00 2.82
2343 4052 6.459985 GCATTGTATCAAACACCTATCATGCA 60.460 38.462 0.00 0.00 41.40 3.96
2350 4059 1.146930 ACCTATCATGCACCTGCCG 59.853 57.895 0.00 0.00 41.18 5.69
2358 4067 2.198969 TGCACCTGCCGCATTTTCA 61.199 52.632 0.00 0.00 41.18 2.69
2368 4077 0.953471 CGCATTTTCAGACCGGTGGA 60.953 55.000 14.63 6.65 0.00 4.02
2371 4080 2.614481 GCATTTTCAGACCGGTGGAGTA 60.614 50.000 14.63 1.57 0.00 2.59
2375 4084 0.034380 TCAGACCGGTGGAGTAGAGG 60.034 60.000 14.63 0.00 0.00 3.69
2378 4087 2.042843 CCGGTGGAGTAGAGGGCT 60.043 66.667 0.00 0.00 0.00 5.19
2384 4093 3.532979 GGTGGAGTAGAGGGCTACACAG 61.533 59.091 9.50 0.00 46.73 3.66
2444 4153 3.321648 AGCACCCATCCAGCGTCA 61.322 61.111 0.00 0.00 0.00 4.35
2462 4181 0.814410 CATGCTGCCTTCGATGAGCT 60.814 55.000 11.62 0.00 32.41 4.09
2489 4208 2.880963 GCAGTAGGCGAAGAGAAGAT 57.119 50.000 0.00 0.00 0.00 2.40
2498 4218 2.600731 CGAAGAGAAGATGCGTTCAGT 58.399 47.619 0.00 0.00 0.00 3.41
2501 4221 4.433544 CGAAGAGAAGATGCGTTCAGTTTC 60.434 45.833 0.00 0.00 0.00 2.78
2502 4222 3.330267 AGAGAAGATGCGTTCAGTTTCC 58.670 45.455 0.00 0.00 0.00 3.13
2510 4230 2.356553 TTCAGTTTCCGGCCGTCG 60.357 61.111 26.12 10.11 38.88 5.12
2511 4231 3.154584 TTCAGTTTCCGGCCGTCGT 62.155 57.895 26.12 0.00 37.11 4.34
2562 4360 1.078848 GCAGTCCGTCTCCATGCTT 60.079 57.895 0.00 0.00 34.10 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 21 2.176314 TTGTGGCGCTGCAGAGATCT 62.176 55.000 22.55 0.00 0.00 2.75
42 44 1.018910 AATTTAACCGGGGATTCGCG 58.981 50.000 6.32 2.89 46.86 5.87
72 74 1.409064 CATGATCCGGGAAAGTCGAGA 59.591 52.381 0.00 0.00 0.00 4.04
107 109 9.425893 CACTGATTATTTTGATTGACGTGATAC 57.574 33.333 0.00 0.00 0.00 2.24
129 131 3.434641 CAGATGCTCTTGTACCAACACTG 59.565 47.826 0.00 0.00 34.61 3.66
214 229 1.204704 AGCTATAGTCACGTGCTGCAA 59.795 47.619 11.67 0.00 32.32 4.08
230 245 0.452184 GCTGTGAGCGTCAGTAGCTA 59.548 55.000 12.60 0.00 46.13 3.32
231 246 1.527433 TGCTGTGAGCGTCAGTAGCT 61.527 55.000 17.01 0.00 46.26 3.32
240 255 2.610694 CCAACCTGTGCTGTGAGCG 61.611 63.158 0.00 0.00 46.26 5.03
248 582 2.924105 GCCTGAAGCCAACCTGTGC 61.924 63.158 0.00 0.00 34.35 4.57
342 685 4.432712 CCCAATAATGCTGCACCTTTAAC 58.567 43.478 3.57 0.00 0.00 2.01
451 794 4.148825 CAGGACTTCCTCCGCCGG 62.149 72.222 0.00 0.00 46.65 6.13
472 815 4.153411 ACCTGTTACTGTTACTGAGAGCT 58.847 43.478 5.56 0.00 0.00 4.09
486 829 9.821662 GACATGAGTTTGTTAATTACCTGTTAC 57.178 33.333 0.00 0.00 0.00 2.50
487 830 9.562408 TGACATGAGTTTGTTAATTACCTGTTA 57.438 29.630 0.00 0.00 0.00 2.41
488 831 8.458573 TGACATGAGTTTGTTAATTACCTGTT 57.541 30.769 0.00 0.00 0.00 3.16
489 832 7.719633 ACTGACATGAGTTTGTTAATTACCTGT 59.280 33.333 0.00 0.00 0.00 4.00
490 833 8.099364 ACTGACATGAGTTTGTTAATTACCTG 57.901 34.615 0.00 0.00 0.00 4.00
491 834 8.691661 AACTGACATGAGTTTGTTAATTACCT 57.308 30.769 0.00 0.00 31.92 3.08
497 840 9.826574 AGTTAGTAACTGACATGAGTTTGTTAA 57.173 29.630 14.82 0.00 41.01 2.01
544 892 1.829138 ACCACCCCTAAAGTTCAGGT 58.171 50.000 0.00 0.00 0.00 4.00
558 906 7.159372 TCAACTCTCAAGTAAATTCTACCACC 58.841 38.462 0.00 0.00 33.48 4.61
561 909 8.713271 CAGTTCAACTCTCAAGTAAATTCTACC 58.287 37.037 0.00 0.00 33.48 3.18
616 964 3.661944 AGTGCATTCAGTCTGTTCTGAG 58.338 45.455 0.00 0.00 43.85 3.35
703 1202 3.138304 GGGTATGATTGCGTGCTAATGA 58.862 45.455 0.00 0.00 0.00 2.57
722 1221 3.420482 GGAGGGATGGTGGTGGGG 61.420 72.222 0.00 0.00 0.00 4.96
723 1222 3.420482 GGGAGGGATGGTGGTGGG 61.420 72.222 0.00 0.00 0.00 4.61
724 1223 2.286425 AGGGAGGGATGGTGGTGG 60.286 66.667 0.00 0.00 0.00 4.61
725 1224 2.735772 CGAGGGAGGGATGGTGGTG 61.736 68.421 0.00 0.00 0.00 4.17
726 1225 2.365635 CGAGGGAGGGATGGTGGT 60.366 66.667 0.00 0.00 0.00 4.16
727 1226 2.946988 TAGCGAGGGAGGGATGGTGG 62.947 65.000 0.00 0.00 0.00 4.61
728 1227 1.457643 TAGCGAGGGAGGGATGGTG 60.458 63.158 0.00 0.00 0.00 4.17
731 1230 2.925262 CGCTAGCGAGGGAGGGATG 61.925 68.421 32.98 0.00 42.83 3.51
732 1231 2.598985 CGCTAGCGAGGGAGGGAT 60.599 66.667 32.98 0.00 42.83 3.85
733 1232 4.124943 ACGCTAGCGAGGGAGGGA 62.125 66.667 41.33 0.00 42.83 4.20
734 1233 3.905678 CACGCTAGCGAGGGAGGG 61.906 72.222 41.33 17.41 42.83 4.30
735 1234 4.577246 GCACGCTAGCGAGGGAGG 62.577 72.222 41.33 22.40 42.83 4.30
736 1235 3.826754 TGCACGCTAGCGAGGGAG 61.827 66.667 41.33 24.25 42.83 4.30
737 1236 4.129737 GTGCACGCTAGCGAGGGA 62.130 66.667 41.33 29.28 42.83 4.20
748 2396 2.174107 CATGGCTTCACGTGCACG 59.826 61.111 35.99 35.99 46.33 5.34
849 2505 1.157585 GAAAGAAGAACGGGTCCAGC 58.842 55.000 0.00 0.00 0.00 4.85
858 2514 2.990514 GCGTGGAGAGAGAAAGAAGAAC 59.009 50.000 0.00 0.00 0.00 3.01
866 2536 2.258591 GCACGCGTGGAGAGAGAA 59.741 61.111 37.47 0.00 0.00 2.87
897 2567 3.125146 CACTCTCAGAGTCTCAGTCGAAG 59.875 52.174 3.60 0.00 41.37 3.79
901 2571 3.436704 CACTCACTCTCAGAGTCTCAGTC 59.563 52.174 3.60 0.00 44.11 3.51
902 2572 3.411446 CACTCACTCTCAGAGTCTCAGT 58.589 50.000 3.60 4.58 44.11 3.41
903 2573 2.749076 CCACTCACTCTCAGAGTCTCAG 59.251 54.545 3.60 3.91 44.11 3.35
904 2574 2.107378 ACCACTCACTCTCAGAGTCTCA 59.893 50.000 3.60 0.00 44.11 3.27
905 2575 2.790433 ACCACTCACTCTCAGAGTCTC 58.210 52.381 3.60 0.00 44.11 3.36
906 2576 2.969821 ACCACTCACTCTCAGAGTCT 57.030 50.000 3.60 0.00 44.11 3.24
907 2577 2.422127 GCTACCACTCACTCTCAGAGTC 59.578 54.545 3.60 0.00 44.11 3.36
908 2578 2.041081 AGCTACCACTCACTCTCAGAGT 59.959 50.000 0.00 0.00 46.72 3.24
909 2579 2.423185 CAGCTACCACTCACTCTCAGAG 59.577 54.545 0.00 0.00 39.04 3.35
910 2580 2.441410 CAGCTACCACTCACTCTCAGA 58.559 52.381 0.00 0.00 0.00 3.27
914 2584 1.356059 TCTCCAGCTACCACTCACTCT 59.644 52.381 0.00 0.00 0.00 3.24
918 2588 3.090037 GTTACTCTCCAGCTACCACTCA 58.910 50.000 0.00 0.00 0.00 3.41
1725 3429 5.640158 TTCAGAAAGAGGGAGGTAACAAA 57.360 39.130 0.00 0.00 41.41 2.83
1818 3523 0.107361 AGCTCACAGCATATGCAGCA 60.107 50.000 29.00 13.89 45.56 4.41
1820 3525 2.681344 TGAAAGCTCACAGCATATGCAG 59.319 45.455 28.62 23.15 45.56 4.41
1822 3527 3.564644 AGATGAAAGCTCACAGCATATGC 59.435 43.478 20.36 20.36 45.56 3.14
1824 3529 4.778579 ACAGATGAAAGCTCACAGCATAT 58.221 39.130 10.14 0.00 45.56 1.78
1860 3565 8.736097 ACTTTTCCCTTTAATTAATTCACCCT 57.264 30.769 3.39 0.00 0.00 4.34
1893 3598 7.121759 TCTCTATGCTTTGAAGAAAATTGAGGG 59.878 37.037 0.00 0.00 0.00 4.30
1906 3615 6.490241 TGAAGGATCATCTCTATGCTTTGA 57.510 37.500 0.00 0.00 35.44 2.69
1908 3617 6.897986 AGTTGAAGGATCATCTCTATGCTTT 58.102 36.000 0.00 0.00 35.44 3.51
1916 3625 7.036220 TCGTTTTAGAGTTGAAGGATCATCTC 58.964 38.462 8.25 8.25 46.18 2.75
1918 3627 7.227992 CTCGTTTTAGAGTTGAAGGATCATC 57.772 40.000 0.00 0.00 34.96 2.92
1939 3648 9.469807 AATCATTCTATGCTTTAGAGTTACTCG 57.530 33.333 6.73 0.00 35.36 4.18
1945 3654 8.417106 TCGAAGAATCATTCTATGCTTTAGAGT 58.583 33.333 0.00 0.00 39.61 3.24
1946 3655 8.809159 TCGAAGAATCATTCTATGCTTTAGAG 57.191 34.615 0.00 0.00 39.61 2.43
1948 3657 8.008844 GCTTCGAAGAATCATTCTATGCTTTAG 58.991 37.037 28.95 0.00 45.90 1.85
1949 3658 7.495606 TGCTTCGAAGAATCATTCTATGCTTTA 59.504 33.333 28.95 0.00 45.90 1.85
1950 3659 6.317140 TGCTTCGAAGAATCATTCTATGCTTT 59.683 34.615 28.95 0.00 45.90 3.51
1952 3661 5.363101 TGCTTCGAAGAATCATTCTATGCT 58.637 37.500 28.95 0.00 45.90 3.79
1953 3662 5.663795 TGCTTCGAAGAATCATTCTATGC 57.336 39.130 28.95 9.64 45.90 3.14
1954 3663 8.754230 TCTATGCTTCGAAGAATCATTCTATG 57.246 34.615 28.95 10.40 45.90 2.23
1955 3664 9.770097 TTTCTATGCTTCGAAGAATCATTCTAT 57.230 29.630 28.95 3.00 45.90 1.98
1956 3665 9.770097 ATTTCTATGCTTCGAAGAATCATTCTA 57.230 29.630 28.95 6.60 45.90 2.10
1957 3666 8.557864 CATTTCTATGCTTCGAAGAATCATTCT 58.442 33.333 28.95 4.56 45.90 2.40
1958 3667 8.554528 TCATTTCTATGCTTCGAAGAATCATTC 58.445 33.333 28.95 9.40 45.90 2.67
1959 3668 8.442632 TCATTTCTATGCTTCGAAGAATCATT 57.557 30.769 28.95 5.75 45.90 2.57
1960 3669 8.618702 ATCATTTCTATGCTTCGAAGAATCAT 57.381 30.769 28.95 22.09 45.90 2.45
1961 3670 7.172190 GGATCATTTCTATGCTTCGAAGAATCA 59.828 37.037 28.95 16.96 45.90 2.57
1962 3671 7.387397 AGGATCATTTCTATGCTTCGAAGAATC 59.613 37.037 28.95 11.61 45.90 2.52
1963 3672 7.222872 AGGATCATTTCTATGCTTCGAAGAAT 58.777 34.615 28.95 25.43 45.90 2.40
1964 3673 6.586344 AGGATCATTTCTATGCTTCGAAGAA 58.414 36.000 28.95 19.88 45.90 2.52
1965 3674 6.166984 AGGATCATTTCTATGCTTCGAAGA 57.833 37.500 28.95 13.86 0.00 2.87
1966 3675 6.857777 AAGGATCATTTCTATGCTTCGAAG 57.142 37.500 21.02 21.02 30.11 3.79
1967 3676 6.851222 GAAGGATCATTTCTATGCTTCGAA 57.149 37.500 0.00 0.00 40.46 3.71
1970 3679 7.518052 CGAGTTGAAGGATCATTTCTATGCTTC 60.518 40.741 9.55 9.55 46.28 3.86
1971 3680 6.259608 CGAGTTGAAGGATCATTTCTATGCTT 59.740 38.462 0.00 0.00 37.67 3.91
1972 3681 5.757320 CGAGTTGAAGGATCATTTCTATGCT 59.243 40.000 0.00 0.00 34.96 3.79
1973 3682 5.525378 ACGAGTTGAAGGATCATTTCTATGC 59.475 40.000 0.00 0.00 34.96 3.14
1974 3683 6.536582 ACACGAGTTGAAGGATCATTTCTATG 59.463 38.462 0.00 0.20 34.96 2.23
1975 3684 6.536582 CACACGAGTTGAAGGATCATTTCTAT 59.463 38.462 0.00 0.00 34.96 1.98
1976 3685 5.869344 CACACGAGTTGAAGGATCATTTCTA 59.131 40.000 0.00 0.00 34.96 2.10
1977 3686 4.692625 CACACGAGTTGAAGGATCATTTCT 59.307 41.667 0.00 0.00 34.96 2.52
1978 3687 4.690748 TCACACGAGTTGAAGGATCATTTC 59.309 41.667 0.00 0.00 34.96 2.17
1979 3688 4.641396 TCACACGAGTTGAAGGATCATTT 58.359 39.130 0.00 0.00 34.96 2.32
1980 3689 4.248859 CTCACACGAGTTGAAGGATCATT 58.751 43.478 0.00 0.00 34.96 2.57
1981 3690 3.368843 CCTCACACGAGTTGAAGGATCAT 60.369 47.826 0.00 0.00 37.59 2.45
1982 3691 2.029020 CCTCACACGAGTTGAAGGATCA 60.029 50.000 0.00 0.00 37.59 2.92
1983 3692 2.028930 ACCTCACACGAGTTGAAGGATC 60.029 50.000 11.25 0.00 37.59 3.36
1984 3693 1.971357 ACCTCACACGAGTTGAAGGAT 59.029 47.619 11.25 0.00 37.59 3.24
1985 3694 1.068588 CACCTCACACGAGTTGAAGGA 59.931 52.381 11.25 0.00 33.66 3.36
1986 3695 1.202533 ACACCTCACACGAGTTGAAGG 60.203 52.381 0.00 0.00 35.34 3.46
1987 3696 2.225068 ACACCTCACACGAGTTGAAG 57.775 50.000 0.00 0.00 35.34 3.02
1988 3697 2.276201 CAACACCTCACACGAGTTGAA 58.724 47.619 0.00 0.00 41.41 2.69
1989 3698 1.934589 CAACACCTCACACGAGTTGA 58.065 50.000 0.00 0.00 41.41 3.18
1990 3699 0.304705 GCAACACCTCACACGAGTTG 59.695 55.000 0.00 0.00 41.71 3.16
1991 3700 0.178068 AGCAACACCTCACACGAGTT 59.822 50.000 0.00 0.00 37.59 3.01
1992 3701 1.037493 TAGCAACACCTCACACGAGT 58.963 50.000 0.00 0.00 37.59 4.18
1993 3702 1.419374 GTAGCAACACCTCACACGAG 58.581 55.000 0.00 0.00 39.16 4.18
1994 3703 0.318360 CGTAGCAACACCTCACACGA 60.318 55.000 0.00 0.00 0.00 4.35
1995 3704 0.596600 ACGTAGCAACACCTCACACG 60.597 55.000 0.00 0.00 0.00 4.49
1996 3705 2.030540 TCTACGTAGCAACACCTCACAC 60.031 50.000 18.00 0.00 0.00 3.82
1997 3706 2.232399 TCTACGTAGCAACACCTCACA 58.768 47.619 18.00 0.00 0.00 3.58
1998 3707 3.293311 TTCTACGTAGCAACACCTCAC 57.707 47.619 18.00 0.00 0.00 3.51
1999 3708 4.530710 AATTCTACGTAGCAACACCTCA 57.469 40.909 18.00 0.00 0.00 3.86
2000 3709 5.041940 CCTAATTCTACGTAGCAACACCTC 58.958 45.833 18.00 0.00 0.00 3.85
2001 3710 4.679905 GCCTAATTCTACGTAGCAACACCT 60.680 45.833 18.00 0.82 0.00 4.00
2002 3711 3.554731 GCCTAATTCTACGTAGCAACACC 59.445 47.826 18.00 0.06 0.00 4.16
2003 3712 4.430908 AGCCTAATTCTACGTAGCAACAC 58.569 43.478 18.00 4.06 0.00 3.32
2004 3713 4.679662 GAGCCTAATTCTACGTAGCAACA 58.320 43.478 18.00 0.00 0.00 3.33
2005 3714 3.729716 CGAGCCTAATTCTACGTAGCAAC 59.270 47.826 18.00 3.06 0.00 4.17
2006 3715 3.628942 TCGAGCCTAATTCTACGTAGCAA 59.371 43.478 18.00 12.78 0.00 3.91
2007 3716 3.208594 TCGAGCCTAATTCTACGTAGCA 58.791 45.455 18.00 7.66 0.00 3.49
2008 3717 3.365164 CCTCGAGCCTAATTCTACGTAGC 60.365 52.174 18.00 5.16 0.00 3.58
2009 3718 3.188873 CCCTCGAGCCTAATTCTACGTAG 59.811 52.174 16.73 16.73 0.00 3.51
2010 3719 3.144506 CCCTCGAGCCTAATTCTACGTA 58.855 50.000 6.99 0.00 0.00 3.57
2011 3720 1.955080 CCCTCGAGCCTAATTCTACGT 59.045 52.381 6.99 0.00 0.00 3.57
2012 3721 1.336056 GCCCTCGAGCCTAATTCTACG 60.336 57.143 6.99 0.00 0.00 3.51
2013 3722 1.964933 AGCCCTCGAGCCTAATTCTAC 59.035 52.381 6.99 0.00 0.00 2.59
2014 3723 2.383442 AGCCCTCGAGCCTAATTCTA 57.617 50.000 6.99 0.00 0.00 2.10
2015 3724 1.501582 AAGCCCTCGAGCCTAATTCT 58.498 50.000 6.99 0.00 0.00 2.40
2016 3725 2.365941 ACTAAGCCCTCGAGCCTAATTC 59.634 50.000 6.99 0.00 0.00 2.17
2017 3726 2.103263 CACTAAGCCCTCGAGCCTAATT 59.897 50.000 6.99 0.00 0.00 1.40
2018 3727 1.689273 CACTAAGCCCTCGAGCCTAAT 59.311 52.381 6.99 0.00 0.00 1.73
2019 3728 1.112113 CACTAAGCCCTCGAGCCTAA 58.888 55.000 6.99 0.00 0.00 2.69
2020 3729 0.033405 ACACTAAGCCCTCGAGCCTA 60.033 55.000 6.99 0.00 0.00 3.93
2021 3730 1.305381 ACACTAAGCCCTCGAGCCT 60.305 57.895 6.99 2.15 0.00 4.58
2022 3731 1.153549 CACACTAAGCCCTCGAGCC 60.154 63.158 6.99 0.00 0.00 4.70
2023 3732 1.153549 CCACACTAAGCCCTCGAGC 60.154 63.158 6.99 0.00 0.00 5.03
2024 3733 1.258445 ACCCACACTAAGCCCTCGAG 61.258 60.000 5.13 5.13 0.00 4.04
2025 3734 1.229082 ACCCACACTAAGCCCTCGA 60.229 57.895 0.00 0.00 0.00 4.04
2026 3735 1.079127 CACCCACACTAAGCCCTCG 60.079 63.158 0.00 0.00 0.00 4.63
2027 3736 0.036294 GACACCCACACTAAGCCCTC 60.036 60.000 0.00 0.00 0.00 4.30
2028 3737 1.827399 CGACACCCACACTAAGCCCT 61.827 60.000 0.00 0.00 0.00 5.19
2029 3738 1.375523 CGACACCCACACTAAGCCC 60.376 63.158 0.00 0.00 0.00 5.19
2030 3739 1.375523 CCGACACCCACACTAAGCC 60.376 63.158 0.00 0.00 0.00 4.35
2031 3740 2.033194 GCCGACACCCACACTAAGC 61.033 63.158 0.00 0.00 0.00 3.09
2032 3741 0.670546 CTGCCGACACCCACACTAAG 60.671 60.000 0.00 0.00 0.00 2.18
2033 3742 1.369692 CTGCCGACACCCACACTAA 59.630 57.895 0.00 0.00 0.00 2.24
2034 3743 2.579657 CCTGCCGACACCCACACTA 61.580 63.158 0.00 0.00 0.00 2.74
2035 3744 3.941188 CCTGCCGACACCCACACT 61.941 66.667 0.00 0.00 0.00 3.55
2040 3749 4.468689 GTAGGCCTGCCGACACCC 62.469 72.222 17.99 0.00 40.68 4.61
2041 3750 3.391382 AGTAGGCCTGCCGACACC 61.391 66.667 17.99 1.67 42.93 4.16
2042 3751 2.125512 CAGTAGGCCTGCCGACAC 60.126 66.667 17.99 3.82 42.93 3.67
2043 3752 1.476845 TTTCAGTAGGCCTGCCGACA 61.477 55.000 17.99 1.27 42.93 4.35
2044 3753 0.741221 CTTTCAGTAGGCCTGCCGAC 60.741 60.000 17.99 12.84 41.25 4.79
2045 3754 1.596934 CTTTCAGTAGGCCTGCCGA 59.403 57.895 17.99 9.60 41.25 5.54
2046 3755 1.450312 CCTTTCAGTAGGCCTGCCG 60.450 63.158 17.99 6.63 41.25 5.69
2047 3756 1.077429 CCCTTTCAGTAGGCCTGCC 60.077 63.158 17.99 5.73 41.25 4.85
2048 3757 1.077429 CCCCTTTCAGTAGGCCTGC 60.077 63.158 17.99 15.82 41.25 4.85
2049 3758 1.133976 CATCCCCTTTCAGTAGGCCTG 60.134 57.143 17.99 0.00 42.97 4.85
2050 3759 1.216990 CATCCCCTTTCAGTAGGCCT 58.783 55.000 11.78 11.78 33.73 5.19
2051 3760 0.919710 ACATCCCCTTTCAGTAGGCC 59.080 55.000 0.00 0.00 33.73 5.19
2052 3761 3.809905 CTTACATCCCCTTTCAGTAGGC 58.190 50.000 0.00 0.00 33.73 3.93
2053 3762 3.433740 GGCTTACATCCCCTTTCAGTAGG 60.434 52.174 0.00 0.00 34.92 3.18
2054 3763 3.433740 GGGCTTACATCCCCTTTCAGTAG 60.434 52.174 0.00 0.00 38.30 2.57
2055 3764 2.508300 GGGCTTACATCCCCTTTCAGTA 59.492 50.000 0.00 0.00 38.30 2.74
2056 3765 1.285078 GGGCTTACATCCCCTTTCAGT 59.715 52.381 0.00 0.00 38.30 3.41
2057 3766 2.058593 GGGCTTACATCCCCTTTCAG 57.941 55.000 0.00 0.00 38.30 3.02
2064 3773 2.828661 AAAGAAGGGGCTTACATCCC 57.171 50.000 0.00 0.00 43.46 3.85
2065 3774 4.505324 ACTAAAGAAGGGGCTTACATCC 57.495 45.455 0.00 0.00 0.00 3.51
2066 3775 4.640647 CCAACTAAAGAAGGGGCTTACATC 59.359 45.833 0.00 0.00 0.00 3.06
2067 3776 4.600062 CCAACTAAAGAAGGGGCTTACAT 58.400 43.478 0.00 0.00 0.00 2.29
2068 3777 3.812882 GCCAACTAAAGAAGGGGCTTACA 60.813 47.826 0.00 0.00 43.09 2.41
2069 3778 2.753452 GCCAACTAAAGAAGGGGCTTAC 59.247 50.000 0.00 0.00 43.09 2.34
2070 3779 2.291346 GGCCAACTAAAGAAGGGGCTTA 60.291 50.000 0.00 0.00 44.78 3.09
2071 3780 1.550179 GGCCAACTAAAGAAGGGGCTT 60.550 52.381 0.00 0.00 44.78 4.35
2072 3781 0.039764 GGCCAACTAAAGAAGGGGCT 59.960 55.000 0.00 0.00 44.78 5.19
2073 3782 1.313091 CGGCCAACTAAAGAAGGGGC 61.313 60.000 2.24 0.00 44.71 5.80
2074 3783 0.679960 CCGGCCAACTAAAGAAGGGG 60.680 60.000 2.24 0.00 0.00 4.79
2075 3784 1.313091 GCCGGCCAACTAAAGAAGGG 61.313 60.000 18.11 0.00 0.00 3.95
2076 3785 0.608035 TGCCGGCCAACTAAAGAAGG 60.608 55.000 26.77 0.00 0.00 3.46
2077 3786 0.521735 GTGCCGGCCAACTAAAGAAG 59.478 55.000 26.77 0.00 0.00 2.85
2078 3787 1.231958 CGTGCCGGCCAACTAAAGAA 61.232 55.000 26.77 0.00 0.00 2.52
2079 3788 1.669760 CGTGCCGGCCAACTAAAGA 60.670 57.895 26.77 0.00 0.00 2.52
2080 3789 2.686816 CCGTGCCGGCCAACTAAAG 61.687 63.158 26.77 6.01 41.17 1.85
2081 3790 2.670251 CCGTGCCGGCCAACTAAA 60.670 61.111 26.77 0.00 41.17 1.85
2091 3800 0.309922 ACGTCTATATCACCGTGCCG 59.690 55.000 0.00 0.00 31.43 5.69
2092 3801 1.767289 CACGTCTATATCACCGTGCC 58.233 55.000 7.68 0.00 43.26 5.01
2095 3804 3.139850 CTCCTCACGTCTATATCACCGT 58.860 50.000 0.00 0.00 0.00 4.83
2096 3805 3.139850 ACTCCTCACGTCTATATCACCG 58.860 50.000 0.00 0.00 0.00 4.94
2097 3806 4.154556 GCTACTCCTCACGTCTATATCACC 59.845 50.000 0.00 0.00 0.00 4.02
2098 3807 4.143073 CGCTACTCCTCACGTCTATATCAC 60.143 50.000 0.00 0.00 0.00 3.06
2099 3808 3.995048 CGCTACTCCTCACGTCTATATCA 59.005 47.826 0.00 0.00 0.00 2.15
2100 3809 3.995705 ACGCTACTCCTCACGTCTATATC 59.004 47.826 0.00 0.00 32.37 1.63
2101 3810 4.005487 ACGCTACTCCTCACGTCTATAT 57.995 45.455 0.00 0.00 32.37 0.86
2102 3811 3.465742 ACGCTACTCCTCACGTCTATA 57.534 47.619 0.00 0.00 32.37 1.31
2103 3812 2.328819 ACGCTACTCCTCACGTCTAT 57.671 50.000 0.00 0.00 32.37 1.98
2104 3813 2.167281 AGTACGCTACTCCTCACGTCTA 59.833 50.000 0.00 0.00 39.78 2.59
2105 3814 1.066286 AGTACGCTACTCCTCACGTCT 60.066 52.381 0.00 0.00 39.78 4.18
2106 3815 1.062294 CAGTACGCTACTCCTCACGTC 59.938 57.143 0.00 0.00 39.78 4.34
2107 3816 1.085091 CAGTACGCTACTCCTCACGT 58.915 55.000 0.00 0.00 42.22 4.49
2108 3817 1.085091 ACAGTACGCTACTCCTCACG 58.915 55.000 0.00 0.00 36.76 4.35
2109 3818 4.897025 ATTACAGTACGCTACTCCTCAC 57.103 45.455 0.00 0.00 36.76 3.51
2110 3819 7.094248 TGTTTAATTACAGTACGCTACTCCTCA 60.094 37.037 0.00 0.00 36.76 3.86
2111 3820 7.253422 TGTTTAATTACAGTACGCTACTCCTC 58.747 38.462 0.00 0.00 36.76 3.71
2112 3821 7.161773 TGTTTAATTACAGTACGCTACTCCT 57.838 36.000 0.00 0.00 36.76 3.69
2113 3822 7.096722 CGATGTTTAATTACAGTACGCTACTCC 60.097 40.741 0.00 0.00 36.76 3.85
2114 3823 7.430502 ACGATGTTTAATTACAGTACGCTACTC 59.569 37.037 0.00 0.00 36.76 2.59
2115 3824 7.253422 ACGATGTTTAATTACAGTACGCTACT 58.747 34.615 0.00 0.00 40.28 2.57
2116 3825 7.441878 ACGATGTTTAATTACAGTACGCTAC 57.558 36.000 0.00 0.00 31.40 3.58
2117 3826 8.397906 AGTACGATGTTTAATTACAGTACGCTA 58.602 33.333 0.00 0.00 36.01 4.26
2118 3827 7.253422 AGTACGATGTTTAATTACAGTACGCT 58.747 34.615 0.00 0.00 36.01 5.07
2119 3828 7.441878 AGTACGATGTTTAATTACAGTACGC 57.558 36.000 0.00 0.00 36.01 4.42
2123 3832 9.309516 CACCATAGTACGATGTTTAATTACAGT 57.690 33.333 13.96 0.00 0.00 3.55
2124 3833 8.761497 CCACCATAGTACGATGTTTAATTACAG 58.239 37.037 13.96 0.00 0.00 2.74
2125 3834 8.476447 TCCACCATAGTACGATGTTTAATTACA 58.524 33.333 13.96 0.00 0.00 2.41
2126 3835 8.876275 TCCACCATAGTACGATGTTTAATTAC 57.124 34.615 13.96 0.00 0.00 1.89
2127 3836 8.145767 CCTCCACCATAGTACGATGTTTAATTA 58.854 37.037 13.96 0.00 0.00 1.40
2128 3837 6.990349 CCTCCACCATAGTACGATGTTTAATT 59.010 38.462 13.96 0.00 0.00 1.40
2129 3838 6.522054 CCTCCACCATAGTACGATGTTTAAT 58.478 40.000 13.96 0.00 0.00 1.40
2130 3839 5.682990 GCCTCCACCATAGTACGATGTTTAA 60.683 44.000 13.96 0.00 0.00 1.52
2131 3840 4.202182 GCCTCCACCATAGTACGATGTTTA 60.202 45.833 13.96 0.00 0.00 2.01
2132 3841 3.431766 GCCTCCACCATAGTACGATGTTT 60.432 47.826 13.96 0.00 0.00 2.83
2133 3842 2.102588 GCCTCCACCATAGTACGATGTT 59.897 50.000 13.96 0.00 0.00 2.71
2134 3843 1.687123 GCCTCCACCATAGTACGATGT 59.313 52.381 13.96 1.23 0.00 3.06
2135 3844 1.686587 TGCCTCCACCATAGTACGATG 59.313 52.381 8.85 8.85 0.00 3.84
2136 3845 2.082140 TGCCTCCACCATAGTACGAT 57.918 50.000 0.00 0.00 0.00 3.73
2137 3846 2.082140 ATGCCTCCACCATAGTACGA 57.918 50.000 0.00 0.00 0.00 3.43
2138 3847 2.365617 AGAATGCCTCCACCATAGTACG 59.634 50.000 0.00 0.00 0.00 3.67
2139 3848 4.423625 AAGAATGCCTCCACCATAGTAC 57.576 45.455 0.00 0.00 0.00 2.73
2140 3849 5.192927 CAAAAGAATGCCTCCACCATAGTA 58.807 41.667 0.00 0.00 0.00 1.82
2141 3850 4.019174 CAAAAGAATGCCTCCACCATAGT 58.981 43.478 0.00 0.00 0.00 2.12
2142 3851 3.181483 GCAAAAGAATGCCTCCACCATAG 60.181 47.826 0.00 0.00 40.49 2.23
2143 3852 2.760092 GCAAAAGAATGCCTCCACCATA 59.240 45.455 0.00 0.00 40.49 2.74
2144 3853 1.551883 GCAAAAGAATGCCTCCACCAT 59.448 47.619 0.00 0.00 40.49 3.55
2145 3854 0.968405 GCAAAAGAATGCCTCCACCA 59.032 50.000 0.00 0.00 40.49 4.17
2146 3855 3.820595 GCAAAAGAATGCCTCCACC 57.179 52.632 0.00 0.00 40.49 4.61
2153 3862 3.949842 AGAAGAAGGGCAAAAGAATGC 57.050 42.857 0.00 0.00 45.67 3.56
2238 3947 9.825109 GTTATCAGGTTTAAGAAGCTAAGAGAT 57.175 33.333 0.00 0.00 41.44 2.75
2242 3951 7.496263 GGGAGTTATCAGGTTTAAGAAGCTAAG 59.504 40.741 0.00 0.00 41.44 2.18
2244 3953 6.672657 AGGGAGTTATCAGGTTTAAGAAGCTA 59.327 38.462 0.00 0.00 41.44 3.32
2246 3955 5.746284 AGGGAGTTATCAGGTTTAAGAAGC 58.254 41.667 0.00 0.00 0.00 3.86
2271 3980 2.359848 ACAAAACCACTTAAAGCGGGAC 59.640 45.455 0.00 0.00 0.00 4.46
2272 3981 2.657143 ACAAAACCACTTAAAGCGGGA 58.343 42.857 0.00 0.00 0.00 5.14
2274 3983 4.035278 TCAACAAAACCACTTAAAGCGG 57.965 40.909 0.00 0.00 0.00 5.52
2276 3985 5.173131 CGTCATCAACAAAACCACTTAAAGC 59.827 40.000 0.00 0.00 0.00 3.51
2277 3986 6.196353 CACGTCATCAACAAAACCACTTAAAG 59.804 38.462 0.00 0.00 0.00 1.85
2279 3988 5.449314 CCACGTCATCAACAAAACCACTTAA 60.449 40.000 0.00 0.00 0.00 1.85
2280 3989 4.035792 CCACGTCATCAACAAAACCACTTA 59.964 41.667 0.00 0.00 0.00 2.24
2281 3990 3.181491 CCACGTCATCAACAAAACCACTT 60.181 43.478 0.00 0.00 0.00 3.16
2283 3992 2.726633 CCACGTCATCAACAAAACCAC 58.273 47.619 0.00 0.00 0.00 4.16
2285 3994 1.066303 TGCCACGTCATCAACAAAACC 59.934 47.619 0.00 0.00 0.00 3.27
2286 3995 2.483583 TGCCACGTCATCAACAAAAC 57.516 45.000 0.00 0.00 0.00 2.43
2287 3996 2.288091 CCATGCCACGTCATCAACAAAA 60.288 45.455 0.00 0.00 0.00 2.44
2288 3997 1.269174 CCATGCCACGTCATCAACAAA 59.731 47.619 0.00 0.00 0.00 2.83
2289 3998 0.880441 CCATGCCACGTCATCAACAA 59.120 50.000 0.00 0.00 0.00 2.83
2290 3999 0.250684 ACCATGCCACGTCATCAACA 60.251 50.000 0.00 0.00 0.00 3.33
2291 4000 0.881118 AACCATGCCACGTCATCAAC 59.119 50.000 0.00 0.00 0.00 3.18
2292 4001 1.614996 AAACCATGCCACGTCATCAA 58.385 45.000 0.00 0.00 0.00 2.57
2293 4002 1.614996 AAAACCATGCCACGTCATCA 58.385 45.000 0.00 0.00 0.00 3.07
2294 4003 2.288152 ACAAAAACCATGCCACGTCATC 60.288 45.455 0.00 0.00 0.00 2.92
2295 4004 1.686052 ACAAAAACCATGCCACGTCAT 59.314 42.857 0.00 0.00 0.00 3.06
2296 4005 1.107114 ACAAAAACCATGCCACGTCA 58.893 45.000 0.00 0.00 0.00 4.35
2297 4006 1.857837 CAACAAAAACCATGCCACGTC 59.142 47.619 0.00 0.00 0.00 4.34
2298 4007 1.472376 CCAACAAAAACCATGCCACGT 60.472 47.619 0.00 0.00 0.00 4.49
2299 4008 1.216122 CCAACAAAAACCATGCCACG 58.784 50.000 0.00 0.00 0.00 4.94
2300 4009 0.943673 GCCAACAAAAACCATGCCAC 59.056 50.000 0.00 0.00 0.00 5.01
2301 4010 0.543277 TGCCAACAAAAACCATGCCA 59.457 45.000 0.00 0.00 0.00 4.92
2302 4011 1.894881 ATGCCAACAAAAACCATGCC 58.105 45.000 0.00 0.00 0.00 4.40
2303 4012 2.617774 ACAATGCCAACAAAAACCATGC 59.382 40.909 0.00 0.00 0.00 4.06
2304 4013 5.699915 TGATACAATGCCAACAAAAACCATG 59.300 36.000 0.00 0.00 0.00 3.66
2305 4014 5.862845 TGATACAATGCCAACAAAAACCAT 58.137 33.333 0.00 0.00 0.00 3.55
2313 4022 3.894427 AGGTGTTTGATACAATGCCAACA 59.106 39.130 0.00 0.00 38.80 3.33
2323 4032 5.008019 CAGGTGCATGATAGGTGTTTGATAC 59.992 44.000 0.00 0.00 0.00 2.24
2343 4052 1.244019 GGTCTGAAAATGCGGCAGGT 61.244 55.000 9.25 0.00 0.00 4.00
2350 4059 0.804989 CTCCACCGGTCTGAAAATGC 59.195 55.000 2.59 0.00 0.00 3.56
2358 4067 1.306970 CCCTCTACTCCACCGGTCT 59.693 63.158 2.59 0.00 0.00 3.85
2375 4084 3.130217 TCGTAGACGTGCTGTGTAGCC 62.130 57.143 0.00 0.00 42.92 3.93
2395 4104 2.960170 CGTCGAAGAAGGGGACGT 59.040 61.111 4.78 0.00 46.07 4.34
2444 4153 0.814410 CAGCTCATCGAAGGCAGCAT 60.814 55.000 9.94 0.00 34.08 3.79
2448 4157 0.321919 AAAGCAGCTCATCGAAGGCA 60.322 50.000 0.00 0.00 0.00 4.75
2449 4158 0.098376 CAAAGCAGCTCATCGAAGGC 59.902 55.000 0.00 0.00 0.00 4.35
2452 4161 1.789751 CGCAAAGCAGCTCATCGAA 59.210 52.632 0.00 0.00 0.00 3.71
2479 4198 4.143009 GGAAACTGAACGCATCTTCTCTTC 60.143 45.833 0.00 0.00 0.00 2.87
2482 4201 2.092838 CGGAAACTGAACGCATCTTCTC 59.907 50.000 0.00 0.00 0.00 2.87
2484 4203 1.128692 CCGGAAACTGAACGCATCTTC 59.871 52.381 0.00 0.00 0.00 2.87
2489 4208 2.975799 GGCCGGAAACTGAACGCA 60.976 61.111 5.05 0.00 0.00 5.24
2498 4218 3.562779 GAGTGACGACGGCCGGAAA 62.563 63.158 31.76 7.17 43.93 3.13
2502 4222 4.813526 CTCGAGTGACGACGGCCG 62.814 72.222 26.86 26.86 46.45 6.13
2510 4230 2.567049 CGGTGACCCTCGAGTGAC 59.433 66.667 12.31 0.37 0.00 3.67
2511 4231 2.675423 CCGGTGACCCTCGAGTGA 60.675 66.667 12.31 0.00 0.00 3.41
2562 4360 0.319900 GAGCAGCCTCGACAGTTTGA 60.320 55.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.