Multiple sequence alignment - TraesCS2B01G504200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G504200 chr2B 100.000 2531 0 0 1 2531 698303983 698301453 0.000000e+00 4674.0
1 TraesCS2B01G504200 chr2B 82.984 811 120 13 900 1707 671354746 671353951 0.000000e+00 717.0
2 TraesCS2B01G504200 chr2B 94.895 333 15 1 1 331 698952239 698951907 1.040000e-143 520.0
3 TraesCS2B01G504200 chr2B 84.475 219 16 12 1570 1783 671390712 671390507 1.540000e-47 200.0
4 TraesCS2B01G504200 chr2B 92.593 54 3 1 502 555 698951382 698951330 2.700000e-10 76.8
5 TraesCS2B01G504200 chr2B 97.674 43 0 1 622 663 698951332 698951290 3.490000e-09 73.1
6 TraesCS2B01G504200 chr2D 92.984 1183 70 5 664 1841 580004227 580003053 0.000000e+00 1712.0
7 TraesCS2B01G504200 chr2D 94.346 283 14 1 1 281 580004892 580004610 1.390000e-117 433.0
8 TraesCS2B01G504200 chr2D 94.675 169 7 1 2360 2526 580001342 580001174 6.940000e-66 261.0
9 TraesCS2B01G504200 chr2D 91.257 183 12 3 2346 2526 559294806 559294626 1.940000e-61 246.0
10 TraesCS2B01G504200 chr2D 94.697 132 6 1 265 395 580004595 580004464 1.190000e-48 204.0
11 TraesCS2B01G504200 chr2D 96.907 97 3 0 395 491 580004495 580004399 2.010000e-36 163.0
12 TraesCS2B01G504200 chr2A 92.626 895 54 4 664 1554 717878798 717877912 0.000000e+00 1277.0
13 TraesCS2B01G504200 chr2A 92.112 393 16 4 1899 2277 261666070 261665679 7.970000e-150 540.0
14 TraesCS2B01G504200 chr2A 93.902 246 13 1 1 244 717879847 717879602 1.110000e-98 370.0
15 TraesCS2B01G504200 chr2A 92.800 250 16 2 2278 2526 717877479 717877231 6.660000e-96 361.0
16 TraesCS2B01G504200 chr2A 88.571 175 18 1 1553 1727 717877818 717877646 7.090000e-51 211.0
17 TraesCS2B01G504200 chr2A 92.982 57 4 0 1126 1182 702246232 702246176 1.610000e-12 84.2
18 TraesCS2B01G504200 chr2A 94.118 51 2 1 505 555 717878932 717878883 2.700000e-10 76.8
19 TraesCS2B01G504200 chr2A 95.349 43 1 1 622 663 717878885 717878843 1.620000e-07 67.6
20 TraesCS2B01G504200 chr1B 91.667 384 24 4 1899 2279 593054221 593054599 2.230000e-145 525.0
21 TraesCS2B01G504200 chr5D 90.415 386 26 6 1899 2277 78009900 78010281 4.860000e-137 497.0
22 TraesCS2B01G504200 chr6A 90.909 374 19 5 1899 2263 121746788 121746421 2.930000e-134 488.0
23 TraesCS2B01G504200 chr6A 79.435 248 42 8 1029 1270 615700074 615699830 1.560000e-37 167.0
24 TraesCS2B01G504200 chr6A 95.312 64 2 1 571 633 563554354 563554417 1.600000e-17 100.0
25 TraesCS2B01G504200 chr4A 89.223 399 22 10 1899 2280 648785463 648785857 1.760000e-131 479.0
26 TraesCS2B01G504200 chr4A 90.710 183 11 2 2346 2526 667030362 667030184 3.250000e-59 239.0
27 TraesCS2B01G504200 chr7D 89.567 393 18 9 1899 2283 426545261 426544884 6.330000e-131 477.0
28 TraesCS2B01G504200 chr7D 90.667 75 4 3 552 624 40483551 40483624 2.070000e-16 97.1
29 TraesCS2B01G504200 chr7B 88.342 386 32 6 1899 2277 313771448 313771069 3.840000e-123 451.0
30 TraesCS2B01G504200 chr7B 87.918 389 30 12 1899 2277 611152301 611151920 2.310000e-120 442.0
31 TraesCS2B01G504200 chr7B 87.887 388 30 10 1899 2277 610817529 610817150 8.310000e-120 440.0
32 TraesCS2B01G504200 chr7B 91.549 71 4 2 571 639 277106161 277106091 2.070000e-16 97.1
33 TraesCS2B01G504200 chr7B 88.158 76 8 1 554 628 508830715 508830640 3.470000e-14 89.8
34 TraesCS2B01G504200 chr3D 86.702 188 12 4 2346 2531 94806680 94806504 1.990000e-46 196.0
35 TraesCS2B01G504200 chr6D 78.431 255 35 16 1029 1270 470868409 470868162 5.640000e-32 148.0
36 TraesCS2B01G504200 chr6D 91.304 69 4 2 556 624 402887614 402887548 2.680000e-15 93.5
37 TraesCS2B01G504200 chr3B 94.203 69 1 3 554 620 825366329 825366262 4.450000e-18 102.0
38 TraesCS2B01G504200 chr3B 87.342 79 7 2 547 625 61654422 61654347 1.250000e-13 87.9
39 TraesCS2B01G504200 chr3B 90.476 63 6 0 571 633 293523580 293523518 1.610000e-12 84.2
40 TraesCS2B01G504200 chr5B 91.304 69 5 1 571 638 526271444 526271376 2.680000e-15 93.5
41 TraesCS2B01G504200 chr5B 86.420 81 9 2 546 624 266015018 266015098 1.250000e-13 87.9
42 TraesCS2B01G504200 chr5B 86.585 82 7 3 554 631 644352464 644352383 1.250000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G504200 chr2B 698301453 698303983 2530 True 4674.0 4674 100.000000 1 2531 1 chr2B.!!$R3 2530
1 TraesCS2B01G504200 chr2B 671353951 671354746 795 True 717.0 717 82.984000 900 1707 1 chr2B.!!$R1 807
2 TraesCS2B01G504200 chr2B 698951290 698952239 949 True 223.3 520 95.054000 1 663 3 chr2B.!!$R4 662
3 TraesCS2B01G504200 chr2D 580001174 580004892 3718 True 554.6 1712 94.721800 1 2526 5 chr2D.!!$R2 2525
4 TraesCS2B01G504200 chr2A 717877231 717879847 2616 True 393.9 1277 92.894333 1 2526 6 chr2A.!!$R3 2525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.384725 CGTTGCTTGGTCGCTTCTTG 60.385 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 2760 0.165944 CGCACCAGGACGTTTGAATC 59.834 55.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 0.524862 CAAGGTGATGACAAGGCTGC 59.475 55.000 0.00 0.00 0.00 5.25
141 142 4.513318 GCAGGTAGAAGTGAGGATATTTGC 59.487 45.833 0.00 0.00 0.00 3.68
149 150 4.517285 AGTGAGGATATTTGCGATGTTGT 58.483 39.130 0.00 0.00 0.00 3.32
171 172 4.851558 GTGTTTTGTAAGATGCGATTCACC 59.148 41.667 0.00 0.00 0.00 4.02
190 191 0.384725 CGTTGCTTGGTCGCTTCTTG 60.385 55.000 0.00 0.00 0.00 3.02
231 234 2.216750 ATCAGTTTGGCATGTGGCGC 62.217 55.000 0.00 0.00 46.16 6.53
276 519 5.682943 TTGTGACCTTAAATGTGTACTGC 57.317 39.130 0.00 0.00 0.00 4.40
289 563 3.807622 TGTGTACTGCTGTTACTTTGCTC 59.192 43.478 0.09 0.00 0.00 4.26
295 569 4.453819 ACTGCTGTTACTTTGCTCTGAATC 59.546 41.667 0.00 0.00 0.00 2.52
304 578 5.486526 ACTTTGCTCTGAATCTTGTAGAGG 58.513 41.667 0.00 0.00 38.65 3.69
331 605 4.027437 CTCTCTGGAAACTAGCTAAGGGT 58.973 47.826 0.00 0.00 0.00 4.34
332 606 4.024670 TCTCTGGAAACTAGCTAAGGGTC 58.975 47.826 0.00 0.00 0.00 4.46
333 607 4.027437 CTCTGGAAACTAGCTAAGGGTCT 58.973 47.826 0.00 0.00 0.00 3.85
334 608 5.044328 TCTCTGGAAACTAGCTAAGGGTCTA 60.044 44.000 0.00 0.00 0.00 2.59
375 998 2.876550 GGAGCAAACGGTAAGTGAGTTT 59.123 45.455 0.00 0.00 38.46 2.66
376 999 3.314357 GGAGCAAACGGTAAGTGAGTTTT 59.686 43.478 0.00 0.00 36.12 2.43
377 1000 4.279659 GAGCAAACGGTAAGTGAGTTTTG 58.720 43.478 0.00 0.00 36.12 2.44
378 1001 3.692593 AGCAAACGGTAAGTGAGTTTTGT 59.307 39.130 0.00 0.00 36.12 2.83
379 1002 4.033019 GCAAACGGTAAGTGAGTTTTGTC 58.967 43.478 0.00 0.00 36.12 3.18
380 1003 4.268522 CAAACGGTAAGTGAGTTTTGTCG 58.731 43.478 0.00 0.00 36.12 4.35
381 1004 3.441496 ACGGTAAGTGAGTTTTGTCGA 57.559 42.857 0.00 0.00 0.00 4.20
382 1005 3.378339 ACGGTAAGTGAGTTTTGTCGAG 58.622 45.455 0.00 0.00 0.00 4.04
383 1006 2.155155 CGGTAAGTGAGTTTTGTCGAGC 59.845 50.000 0.00 0.00 0.00 5.03
384 1007 3.391049 GGTAAGTGAGTTTTGTCGAGCT 58.609 45.455 0.00 0.00 0.00 4.09
385 1008 4.553323 GGTAAGTGAGTTTTGTCGAGCTA 58.447 43.478 0.00 0.00 0.00 3.32
386 1009 4.621886 GGTAAGTGAGTTTTGTCGAGCTAG 59.378 45.833 0.00 0.00 0.00 3.42
387 1010 3.305398 AGTGAGTTTTGTCGAGCTAGG 57.695 47.619 0.00 0.00 0.00 3.02
388 1011 2.891580 AGTGAGTTTTGTCGAGCTAGGA 59.108 45.455 0.00 0.00 0.00 2.94
389 1012 3.511934 AGTGAGTTTTGTCGAGCTAGGAT 59.488 43.478 0.00 0.00 0.00 3.24
390 1013 4.705507 AGTGAGTTTTGTCGAGCTAGGATA 59.294 41.667 0.00 0.00 0.00 2.59
391 1014 4.799428 GTGAGTTTTGTCGAGCTAGGATAC 59.201 45.833 0.00 0.00 0.00 2.24
392 1015 4.142227 TGAGTTTTGTCGAGCTAGGATACC 60.142 45.833 0.00 0.00 37.17 2.73
393 1016 3.114065 GTTTTGTCGAGCTAGGATACCG 58.886 50.000 0.00 0.00 37.17 4.02
394 1017 1.315690 TTGTCGAGCTAGGATACCGG 58.684 55.000 0.00 0.00 37.17 5.28
395 1018 0.536687 TGTCGAGCTAGGATACCGGG 60.537 60.000 6.32 0.00 37.17 5.73
396 1019 0.536915 GTCGAGCTAGGATACCGGGT 60.537 60.000 6.32 4.46 37.17 5.28
397 1020 1.059098 TCGAGCTAGGATACCGGGTA 58.941 55.000 9.76 9.76 37.17 3.69
398 1021 1.421268 TCGAGCTAGGATACCGGGTAA 59.579 52.381 11.57 0.00 37.17 2.85
399 1022 1.811359 CGAGCTAGGATACCGGGTAAG 59.189 57.143 11.57 5.14 37.17 2.34
400 1023 2.813354 CGAGCTAGGATACCGGGTAAGT 60.813 54.545 11.57 0.00 37.17 2.24
401 1024 2.557490 GAGCTAGGATACCGGGTAAGTG 59.443 54.545 11.57 1.87 37.17 3.16
402 1025 2.176364 AGCTAGGATACCGGGTAAGTGA 59.824 50.000 11.57 0.00 37.17 3.41
403 1026 2.557490 GCTAGGATACCGGGTAAGTGAG 59.443 54.545 11.57 7.89 37.17 3.51
404 1027 2.842645 AGGATACCGGGTAAGTGAGT 57.157 50.000 11.57 0.00 37.17 3.41
405 1028 3.111741 AGGATACCGGGTAAGTGAGTT 57.888 47.619 11.57 0.00 37.17 3.01
426 1049 0.536687 TGTCGAGCTAGGATACCGGG 60.537 60.000 6.32 0.00 37.17 5.73
491 1275 6.070194 AGGCAGGTCTAAATCTTAGCAAAGTA 60.070 38.462 0.00 0.00 34.13 2.24
493 1277 7.414208 GGCAGGTCTAAATCTTAGCAAAGTAAC 60.414 40.741 0.00 0.00 34.13 2.50
495 1279 8.660373 CAGGTCTAAATCTTAGCAAAGTAACAG 58.340 37.037 0.00 0.00 34.13 3.16
498 1282 4.946784 AATCTTAGCAAAGTAACAGGCG 57.053 40.909 0.00 0.00 34.13 5.52
499 1283 3.671008 TCTTAGCAAAGTAACAGGCGA 57.329 42.857 0.00 0.00 34.13 5.54
500 1284 3.997762 TCTTAGCAAAGTAACAGGCGAA 58.002 40.909 0.00 0.00 34.13 4.70
535 1356 1.133792 AGGCCTGAAACATAATCCCCG 60.134 52.381 3.11 0.00 0.00 5.73
540 1361 4.013728 CCTGAAACATAATCCCCGTTTGA 58.986 43.478 0.00 0.00 33.18 2.69
549 1370 6.661805 ACATAATCCCCGTTTGAACTGTTATT 59.338 34.615 0.00 0.00 0.00 1.40
550 1371 7.830201 ACATAATCCCCGTTTGAACTGTTATTA 59.170 33.333 0.00 0.00 0.00 0.98
553 1374 5.562635 TCCCCGTTTGAACTGTTATTATGT 58.437 37.500 0.00 0.00 0.00 2.29
555 1376 6.594937 TCCCCGTTTGAACTGTTATTATGTAC 59.405 38.462 0.00 0.00 0.00 2.90
556 1377 6.596497 CCCCGTTTGAACTGTTATTATGTACT 59.404 38.462 0.00 0.00 0.00 2.73
557 1378 7.201582 CCCCGTTTGAACTGTTATTATGTACTC 60.202 40.741 0.00 0.00 0.00 2.59
558 1379 7.201582 CCCGTTTGAACTGTTATTATGTACTCC 60.202 40.741 0.00 0.00 0.00 3.85
560 1381 7.548075 CGTTTGAACTGTTATTATGTACTCCCT 59.452 37.037 0.00 0.00 0.00 4.20
561 1382 8.880750 GTTTGAACTGTTATTATGTACTCCCTC 58.119 37.037 0.00 0.00 0.00 4.30
562 1383 7.120923 TGAACTGTTATTATGTACTCCCTCC 57.879 40.000 0.00 0.00 0.00 4.30
563 1384 5.786264 ACTGTTATTATGTACTCCCTCCG 57.214 43.478 0.00 0.00 0.00 4.63
564 1385 5.206587 ACTGTTATTATGTACTCCCTCCGT 58.793 41.667 0.00 0.00 0.00 4.69
566 1387 6.152932 TGTTATTATGTACTCCCTCCGTTC 57.847 41.667 0.00 0.00 0.00 3.95
568 1389 4.939052 ATTATGTACTCCCTCCGTTCTG 57.061 45.455 0.00 0.00 0.00 3.02
570 1391 2.526888 TGTACTCCCTCCGTTCTGAT 57.473 50.000 0.00 0.00 0.00 2.90
571 1392 2.816411 TGTACTCCCTCCGTTCTGATT 58.184 47.619 0.00 0.00 0.00 2.57
572 1393 3.170717 TGTACTCCCTCCGTTCTGATTT 58.829 45.455 0.00 0.00 0.00 2.17
573 1394 4.346730 TGTACTCCCTCCGTTCTGATTTA 58.653 43.478 0.00 0.00 0.00 1.40
574 1395 4.960469 TGTACTCCCTCCGTTCTGATTTAT 59.040 41.667 0.00 0.00 0.00 1.40
575 1396 5.424252 TGTACTCCCTCCGTTCTGATTTATT 59.576 40.000 0.00 0.00 0.00 1.40
576 1397 5.437191 ACTCCCTCCGTTCTGATTTATTT 57.563 39.130 0.00 0.00 0.00 1.40
578 1399 5.045869 ACTCCCTCCGTTCTGATTTATTTCA 60.046 40.000 0.00 0.00 0.00 2.69
580 1401 6.242396 TCCCTCCGTTCTGATTTATTTCAAA 58.758 36.000 0.00 0.00 0.00 2.69
581 1402 6.889722 TCCCTCCGTTCTGATTTATTTCAAAT 59.110 34.615 0.00 0.00 0.00 2.32
582 1403 7.396055 TCCCTCCGTTCTGATTTATTTCAAATT 59.604 33.333 0.00 0.00 0.00 1.82
584 1405 8.863049 CCTCCGTTCTGATTTATTTCAAATTTG 58.137 33.333 12.15 12.15 0.00 2.32
585 1406 9.624697 CTCCGTTCTGATTTATTTCAAATTTGA 57.375 29.630 16.91 16.91 34.92 2.69
586 1407 9.973450 TCCGTTCTGATTTATTTCAAATTTGAA 57.027 25.926 26.01 26.01 44.78 2.69
598 1419 8.934507 ATTTCAAATTTGAACTAAAACCACGA 57.065 26.923 28.78 13.09 45.99 4.35
600 1421 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
601 1422 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
602 1423 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
603 1424 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
604 1425 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
605 1426 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
606 1427 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
607 1428 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
608 1429 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
717 1583 0.726827 GAATCCAGAAATCACGCGCA 59.273 50.000 5.73 0.00 0.00 6.09
810 1676 2.212420 AGGAAGGGAAGCATCATTCCT 58.788 47.619 17.32 17.32 46.74 3.36
811 1677 2.174424 AGGAAGGGAAGCATCATTCCTC 59.826 50.000 17.32 3.48 44.07 3.71
880 1746 4.414337 TCAAACCCTCCAAAAACCATTG 57.586 40.909 0.00 0.00 0.00 2.82
887 1753 4.306600 CCTCCAAAAACCATTGTAGCAAC 58.693 43.478 0.00 0.00 0.00 4.17
902 1768 1.750206 AGCAACAAATCAGTGTGTGCA 59.250 42.857 11.95 0.00 37.68 4.57
925 1791 6.729187 CAATTTTCCTCCCATTTATCTCGAC 58.271 40.000 0.00 0.00 0.00 4.20
930 1796 2.019249 TCCCATTTATCTCGACGACGT 58.981 47.619 0.00 0.00 40.69 4.34
954 1820 9.784680 CGTTCTTGTACATATATACCATCTACC 57.215 37.037 0.00 0.00 0.00 3.18
960 1826 9.910267 TGTACATATATACCATCTACCGTACAT 57.090 33.333 0.00 0.00 32.78 2.29
986 1856 1.588674 CCGTCTGCTACCAACACAAA 58.411 50.000 0.00 0.00 0.00 2.83
987 1857 1.263217 CCGTCTGCTACCAACACAAAC 59.737 52.381 0.00 0.00 0.00 2.93
1045 1915 1.098712 CCTCGTCCTCCTCTTCCTCG 61.099 65.000 0.00 0.00 0.00 4.63
1059 1929 4.180946 CTCGTCGCCTCGTCCAGG 62.181 72.222 0.00 0.00 46.82 4.45
1437 2307 3.239253 ACCTGCGAGACCGGGTTT 61.239 61.111 6.32 0.00 36.06 3.27
1513 2383 1.335182 AGGTCTACATCACGCTCGATG 59.665 52.381 9.88 9.88 46.78 3.84
1611 2576 7.122650 GGGTCAGAATTTTCTCATGGAATTGTA 59.877 37.037 0.00 0.00 34.74 2.41
1656 2622 4.201685 GCAATAACTTAGTGAACGTCGCAT 60.202 41.667 0.38 0.00 0.00 4.73
1663 2629 3.232213 AGTGAACGTCGCATAATCTGT 57.768 42.857 0.00 0.00 0.00 3.41
1665 2631 1.658596 TGAACGTCGCATAATCTGTGC 59.341 47.619 0.00 0.00 39.18 4.57
1739 2757 2.942604 AGTACTAAGCTCCCAGGGAA 57.057 50.000 10.32 0.00 0.00 3.97
1740 2758 3.423058 AGTACTAAGCTCCCAGGGAAT 57.577 47.619 10.32 1.25 0.00 3.01
1741 2759 3.041946 AGTACTAAGCTCCCAGGGAATG 58.958 50.000 10.32 0.00 0.00 2.67
1784 2802 2.807045 GCTGTGGTCGTCGCTCAG 60.807 66.667 0.00 0.00 0.00 3.35
1795 2813 1.583054 GTCGCTCAGTTGGTCAGTTT 58.417 50.000 0.00 0.00 0.00 2.66
1839 2857 6.127786 GGAGAAGTGTACGAACAGTATAACCT 60.128 42.308 0.00 0.00 38.36 3.50
1840 2858 7.066284 GGAGAAGTGTACGAACAGTATAACCTA 59.934 40.741 0.00 0.00 38.36 3.08
1841 2859 7.756558 AGAAGTGTACGAACAGTATAACCTAC 58.243 38.462 0.00 0.00 38.36 3.18
1842 2860 6.442513 AGTGTACGAACAGTATAACCTACC 57.557 41.667 0.00 0.00 37.51 3.18
1843 2861 5.945784 AGTGTACGAACAGTATAACCTACCA 59.054 40.000 0.00 0.00 37.51 3.25
1844 2862 6.604795 AGTGTACGAACAGTATAACCTACCAT 59.395 38.462 0.00 0.00 37.51 3.55
1845 2863 7.775093 AGTGTACGAACAGTATAACCTACCATA 59.225 37.037 0.00 0.00 37.51 2.74
1846 2864 8.072567 GTGTACGAACAGTATAACCTACCATAG 58.927 40.741 0.00 0.00 37.69 2.23
1847 2865 7.775093 TGTACGAACAGTATAACCTACCATAGT 59.225 37.037 0.00 0.00 37.69 2.12
1848 2866 9.273016 GTACGAACAGTATAACCTACCATAGTA 57.727 37.037 0.00 0.00 37.69 1.82
1849 2867 8.752005 ACGAACAGTATAACCTACCATAGTAA 57.248 34.615 0.00 0.00 0.00 2.24
1850 2868 8.844244 ACGAACAGTATAACCTACCATAGTAAG 58.156 37.037 0.00 0.00 0.00 2.34
1851 2869 9.060347 CGAACAGTATAACCTACCATAGTAAGA 57.940 37.037 0.00 0.00 0.00 2.10
1854 2872 8.844244 ACAGTATAACCTACCATAGTAAGAACG 58.156 37.037 0.00 0.00 0.00 3.95
1878 2896 1.073125 TCGCTTGGGAGAATGGTTTCA 59.927 47.619 0.00 0.00 34.08 2.69
1881 2899 2.489722 GCTTGGGAGAATGGTTTCAGAC 59.510 50.000 0.00 0.00 34.08 3.51
1883 2901 3.423539 TGGGAGAATGGTTTCAGACTG 57.576 47.619 0.00 0.00 34.08 3.51
1884 2902 2.978978 TGGGAGAATGGTTTCAGACTGA 59.021 45.455 0.00 0.00 34.08 3.41
1885 2903 3.008375 TGGGAGAATGGTTTCAGACTGAG 59.992 47.826 5.10 0.00 34.08 3.35
1886 2904 3.261897 GGGAGAATGGTTTCAGACTGAGA 59.738 47.826 5.10 0.00 34.08 3.27
1887 2905 4.080638 GGGAGAATGGTTTCAGACTGAGAT 60.081 45.833 5.10 0.00 34.08 2.75
1888 2906 5.129485 GGGAGAATGGTTTCAGACTGAGATA 59.871 44.000 5.10 0.00 34.08 1.98
1889 2907 6.279882 GGAGAATGGTTTCAGACTGAGATAG 58.720 44.000 5.10 0.00 34.08 2.08
1890 2908 6.232581 AGAATGGTTTCAGACTGAGATAGG 57.767 41.667 5.10 0.00 34.08 2.57
1891 2909 5.960811 AGAATGGTTTCAGACTGAGATAGGA 59.039 40.000 5.10 0.00 34.08 2.94
1892 2910 6.614906 AGAATGGTTTCAGACTGAGATAGGAT 59.385 38.462 5.10 0.00 34.08 3.24
1893 2911 6.821616 ATGGTTTCAGACTGAGATAGGATT 57.178 37.500 5.10 0.00 0.00 3.01
1894 2912 6.627087 TGGTTTCAGACTGAGATAGGATTT 57.373 37.500 5.10 0.00 0.00 2.17
1895 2913 7.020827 TGGTTTCAGACTGAGATAGGATTTT 57.979 36.000 5.10 0.00 0.00 1.82
1896 2914 7.461749 TGGTTTCAGACTGAGATAGGATTTTT 58.538 34.615 5.10 0.00 0.00 1.94
1914 2932 4.167597 TTTTTCAGACCCGGGTGC 57.832 55.556 36.01 22.50 0.00 5.01
1915 2933 1.529713 TTTTTCAGACCCGGGTGCC 60.530 57.895 36.01 18.92 0.00 5.01
1916 2934 2.987355 TTTTTCAGACCCGGGTGCCC 62.987 60.000 36.01 18.03 0.00 5.36
1928 2946 4.800764 GTGCCCCTACACCCTCTA 57.199 61.111 0.00 0.00 34.35 2.43
1929 2947 3.242355 GTGCCCCTACACCCTCTAT 57.758 57.895 0.00 0.00 34.35 1.98
1930 2948 0.759346 GTGCCCCTACACCCTCTATG 59.241 60.000 0.00 0.00 34.35 2.23
1931 2949 0.639943 TGCCCCTACACCCTCTATGA 59.360 55.000 0.00 0.00 0.00 2.15
1932 2950 1.009060 TGCCCCTACACCCTCTATGAA 59.991 52.381 0.00 0.00 0.00 2.57
1933 2951 1.416772 GCCCCTACACCCTCTATGAAC 59.583 57.143 0.00 0.00 0.00 3.18
1934 2952 2.759355 CCCCTACACCCTCTATGAACA 58.241 52.381 0.00 0.00 0.00 3.18
1935 2953 2.700897 CCCCTACACCCTCTATGAACAG 59.299 54.545 0.00 0.00 0.00 3.16
1936 2954 3.375699 CCCTACACCCTCTATGAACAGT 58.624 50.000 0.00 0.00 0.00 3.55
1937 2955 4.543689 CCCTACACCCTCTATGAACAGTA 58.456 47.826 0.00 0.00 0.00 2.74
1938 2956 4.960469 CCCTACACCCTCTATGAACAGTAA 59.040 45.833 0.00 0.00 0.00 2.24
1939 2957 5.424252 CCCTACACCCTCTATGAACAGTAAA 59.576 44.000 0.00 0.00 0.00 2.01
1940 2958 6.099845 CCCTACACCCTCTATGAACAGTAAAT 59.900 42.308 0.00 0.00 0.00 1.40
1941 2959 7.365652 CCCTACACCCTCTATGAACAGTAAATT 60.366 40.741 0.00 0.00 0.00 1.82
1942 2960 7.711339 CCTACACCCTCTATGAACAGTAAATTC 59.289 40.741 0.00 0.00 0.00 2.17
1943 2961 7.016153 ACACCCTCTATGAACAGTAAATTCA 57.984 36.000 0.00 0.00 40.25 2.57
1944 2962 7.458397 ACACCCTCTATGAACAGTAAATTCAA 58.542 34.615 0.00 0.00 39.43 2.69
1945 2963 7.942341 ACACCCTCTATGAACAGTAAATTCAAA 59.058 33.333 0.00 0.00 39.43 2.69
1946 2964 8.792633 CACCCTCTATGAACAGTAAATTCAAAA 58.207 33.333 0.00 0.00 39.43 2.44
1947 2965 9.533831 ACCCTCTATGAACAGTAAATTCAAAAT 57.466 29.630 0.00 0.00 39.43 1.82
1992 3010 5.473066 AAATCTGAAACTTTGGGACATGG 57.527 39.130 0.00 0.00 39.30 3.66
1993 3011 3.874383 TCTGAAACTTTGGGACATGGA 57.126 42.857 0.00 0.00 39.30 3.41
1994 3012 4.177537 TCTGAAACTTTGGGACATGGAA 57.822 40.909 0.00 0.00 39.30 3.53
1995 3013 3.888930 TCTGAAACTTTGGGACATGGAAC 59.111 43.478 0.00 0.00 39.30 3.62
2014 3032 6.871844 TGGAACAACATGAAACTTTTGATGA 58.128 32.000 7.98 0.00 35.69 2.92
2015 3033 7.499292 TGGAACAACATGAAACTTTTGATGAT 58.501 30.769 7.98 0.00 35.69 2.45
2016 3034 7.652909 TGGAACAACATGAAACTTTTGATGATC 59.347 33.333 7.98 0.00 35.69 2.92
2017 3035 7.869429 GGAACAACATGAAACTTTTGATGATCT 59.131 33.333 7.98 0.00 35.69 2.75
2018 3036 9.252962 GAACAACATGAAACTTTTGATGATCTT 57.747 29.630 7.98 0.00 35.69 2.40
2019 3037 8.583810 ACAACATGAAACTTTTGATGATCTTG 57.416 30.769 7.98 5.24 35.69 3.02
2020 3038 7.170320 ACAACATGAAACTTTTGATGATCTTGC 59.830 33.333 7.98 0.00 35.69 4.01
2021 3039 6.751157 ACATGAAACTTTTGATGATCTTGCA 58.249 32.000 7.98 0.00 35.69 4.08
2022 3040 7.211573 ACATGAAACTTTTGATGATCTTGCAA 58.788 30.769 7.98 0.00 35.69 4.08
2023 3041 7.711772 ACATGAAACTTTTGATGATCTTGCAAA 59.288 29.630 7.98 0.00 35.69 3.68
2024 3042 8.552865 CATGAAACTTTTGATGATCTTGCAAAA 58.447 29.630 0.00 15.18 38.68 2.44
2025 3043 8.665643 TGAAACTTTTGATGATCTTGCAAAAT 57.334 26.923 15.88 0.00 39.77 1.82
2026 3044 9.111613 TGAAACTTTTGATGATCTTGCAAAATT 57.888 25.926 15.88 10.82 39.77 1.82
2027 3045 9.940166 GAAACTTTTGATGATCTTGCAAAATTT 57.060 25.926 15.88 14.34 39.77 1.82
2031 3049 9.537848 CTTTTGATGATCTTGCAAAATTTTAGC 57.462 29.630 15.88 10.18 39.77 3.09
2032 3050 8.836268 TTTGATGATCTTGCAAAATTTTAGCT 57.164 26.923 19.20 0.00 0.00 3.32
2033 3051 9.926158 TTTGATGATCTTGCAAAATTTTAGCTA 57.074 25.926 19.20 13.83 0.00 3.32
2034 3052 9.926158 TTGATGATCTTGCAAAATTTTAGCTAA 57.074 25.926 19.20 0.86 0.00 3.09
2035 3053 9.926158 TGATGATCTTGCAAAATTTTAGCTAAA 57.074 25.926 14.96 14.96 0.00 1.85
2052 3070 9.769093 TTTAGCTAAAAATAACATTCGAAGAGC 57.231 29.630 16.53 0.03 38.43 4.09
2053 3071 7.377766 AGCTAAAAATAACATTCGAAGAGCA 57.622 32.000 3.35 0.00 38.43 4.26
2054 3072 7.244192 AGCTAAAAATAACATTCGAAGAGCAC 58.756 34.615 3.35 0.00 38.43 4.40
2055 3073 7.119846 AGCTAAAAATAACATTCGAAGAGCACT 59.880 33.333 3.35 0.00 38.43 4.40
2056 3074 7.217070 GCTAAAAATAACATTCGAAGAGCACTG 59.783 37.037 3.35 0.00 38.43 3.66
2057 3075 6.801539 AAAATAACATTCGAAGAGCACTGA 57.198 33.333 3.35 0.00 38.43 3.41
2058 3076 6.801539 AAATAACATTCGAAGAGCACTGAA 57.198 33.333 3.35 0.00 38.43 3.02
2059 3077 6.801539 AATAACATTCGAAGAGCACTGAAA 57.198 33.333 3.35 0.00 38.43 2.69
2060 3078 6.992063 ATAACATTCGAAGAGCACTGAAAT 57.008 33.333 3.35 0.00 38.43 2.17
2061 3079 8.492673 AATAACATTCGAAGAGCACTGAAATA 57.507 30.769 3.35 0.00 38.43 1.40
2062 3080 6.801539 AACATTCGAAGAGCACTGAAATAA 57.198 33.333 3.35 0.00 38.43 1.40
2063 3081 6.801539 ACATTCGAAGAGCACTGAAATAAA 57.198 33.333 3.35 0.00 38.43 1.40
2064 3082 7.202016 ACATTCGAAGAGCACTGAAATAAAA 57.798 32.000 3.35 0.00 38.43 1.52
2065 3083 7.648142 ACATTCGAAGAGCACTGAAATAAAAA 58.352 30.769 3.35 0.00 38.43 1.94
2105 3123 9.809096 TTCAAAGTTTATGTACATTTTTGAGCA 57.191 25.926 14.77 8.68 35.35 4.26
2106 3124 9.462174 TCAAAGTTTATGTACATTTTTGAGCAG 57.538 29.630 14.77 0.00 31.64 4.24
2107 3125 9.248291 CAAAGTTTATGTACATTTTTGAGCAGT 57.752 29.630 14.77 0.00 0.00 4.40
2108 3126 8.801715 AAGTTTATGTACATTTTTGAGCAGTG 57.198 30.769 14.77 0.00 0.00 3.66
2109 3127 8.165239 AGTTTATGTACATTTTTGAGCAGTGA 57.835 30.769 14.77 0.00 0.00 3.41
2110 3128 8.796475 AGTTTATGTACATTTTTGAGCAGTGAT 58.204 29.630 14.77 0.00 0.00 3.06
2111 3129 9.410556 GTTTATGTACATTTTTGAGCAGTGATT 57.589 29.630 14.77 0.00 0.00 2.57
2112 3130 9.979578 TTTATGTACATTTTTGAGCAGTGATTT 57.020 25.926 14.77 0.00 0.00 2.17
2113 3131 9.979578 TTATGTACATTTTTGAGCAGTGATTTT 57.020 25.926 14.77 0.00 0.00 1.82
2114 3132 8.891671 ATGTACATTTTTGAGCAGTGATTTTT 57.108 26.923 1.41 0.00 0.00 1.94
2130 3148 3.913855 TTTTTGTGAGGGCTCCACA 57.086 47.368 4.02 4.02 42.16 4.17
2134 3152 1.455849 TGTGAGGGCTCCACAAAGG 59.544 57.895 5.53 0.00 41.07 3.11
2135 3153 1.352622 TGTGAGGGCTCCACAAAGGT 61.353 55.000 5.53 0.00 41.07 3.50
2136 3154 0.178990 GTGAGGGCTCCACAAAGGTT 60.179 55.000 0.82 0.00 39.02 3.50
2137 3155 1.073284 GTGAGGGCTCCACAAAGGTTA 59.927 52.381 0.82 0.00 39.02 2.85
2138 3156 1.992557 TGAGGGCTCCACAAAGGTTAT 59.007 47.619 0.00 0.00 39.02 1.89
2139 3157 2.378547 TGAGGGCTCCACAAAGGTTATT 59.621 45.455 0.00 0.00 39.02 1.40
2140 3158 3.181423 TGAGGGCTCCACAAAGGTTATTT 60.181 43.478 0.00 0.00 39.02 1.40
2141 3159 3.165071 AGGGCTCCACAAAGGTTATTTG 58.835 45.455 0.00 0.00 39.02 2.32
2142 3160 2.897326 GGGCTCCACAAAGGTTATTTGT 59.103 45.455 0.28 0.28 42.75 2.83
2143 3161 3.323691 GGGCTCCACAAAGGTTATTTGTT 59.676 43.478 3.34 0.00 40.30 2.83
2144 3162 4.306600 GGCTCCACAAAGGTTATTTGTTG 58.693 43.478 3.34 1.36 40.30 3.33
2145 3163 3.740832 GCTCCACAAAGGTTATTTGTTGC 59.259 43.478 3.34 5.51 40.30 4.17
2146 3164 4.501400 GCTCCACAAAGGTTATTTGTTGCT 60.501 41.667 3.34 0.00 40.30 3.91
2147 3165 5.600696 CTCCACAAAGGTTATTTGTTGCTT 58.399 37.500 3.34 0.00 40.30 3.91
2148 3166 6.716934 TCCACAAAGGTTATTTGTTGCTTA 57.283 33.333 3.34 0.00 40.30 3.09
2149 3167 7.113658 TCCACAAAGGTTATTTGTTGCTTAA 57.886 32.000 3.34 0.00 40.30 1.85
2150 3168 7.556844 TCCACAAAGGTTATTTGTTGCTTAAA 58.443 30.769 3.34 0.00 40.30 1.52
2151 3169 7.492994 TCCACAAAGGTTATTTGTTGCTTAAAC 59.507 33.333 3.34 0.00 40.30 2.01
2152 3170 7.494298 CCACAAAGGTTATTTGTTGCTTAAACT 59.506 33.333 3.34 0.00 40.30 2.66
2153 3171 8.878769 CACAAAGGTTATTTGTTGCTTAAACTT 58.121 29.630 3.34 0.00 40.30 2.66
2154 3172 9.443323 ACAAAGGTTATTTGTTGCTTAAACTTT 57.557 25.926 0.28 0.00 41.27 2.66
2155 3173 9.701355 CAAAGGTTATTTGTTGCTTAAACTTTG 57.299 29.630 14.43 14.43 46.07 2.77
2156 3174 7.477144 AGGTTATTTGTTGCTTAAACTTTGC 57.523 32.000 0.00 0.00 39.70 3.68
2157 3175 7.044798 AGGTTATTTGTTGCTTAAACTTTGCA 58.955 30.769 0.00 0.00 39.70 4.08
2158 3176 7.224557 AGGTTATTTGTTGCTTAAACTTTGCAG 59.775 33.333 0.00 0.00 39.70 4.41
2159 3177 5.989551 ATTTGTTGCTTAAACTTTGCAGG 57.010 34.783 0.00 0.00 39.70 4.85
2160 3178 4.727507 TTGTTGCTTAAACTTTGCAGGA 57.272 36.364 0.00 0.00 39.70 3.86
2161 3179 4.727507 TGTTGCTTAAACTTTGCAGGAA 57.272 36.364 0.00 0.00 39.70 3.36
2162 3180 4.429108 TGTTGCTTAAACTTTGCAGGAAC 58.571 39.130 10.58 10.58 39.70 3.62
2163 3181 4.081972 TGTTGCTTAAACTTTGCAGGAACA 60.082 37.500 13.93 13.93 42.99 3.18
2164 3182 4.935352 TGCTTAAACTTTGCAGGAACAT 57.065 36.364 0.00 0.00 32.55 2.71
2165 3183 4.870363 TGCTTAAACTTTGCAGGAACATC 58.130 39.130 0.00 0.00 32.55 3.06
2166 3184 4.340666 TGCTTAAACTTTGCAGGAACATCA 59.659 37.500 0.00 0.00 32.55 3.07
2167 3185 5.163468 TGCTTAAACTTTGCAGGAACATCAA 60.163 36.000 0.00 0.00 32.55 2.57
2168 3186 5.752955 GCTTAAACTTTGCAGGAACATCAAA 59.247 36.000 0.00 0.00 32.71 2.69
2169 3187 6.292328 GCTTAAACTTTGCAGGAACATCAAAC 60.292 38.462 0.00 0.00 31.06 2.93
2170 3188 3.733443 ACTTTGCAGGAACATCAAACC 57.267 42.857 0.00 0.00 31.06 3.27
2171 3189 3.299503 ACTTTGCAGGAACATCAAACCT 58.700 40.909 0.00 0.00 31.06 3.50
2172 3190 3.706086 ACTTTGCAGGAACATCAAACCTT 59.294 39.130 0.00 0.00 31.06 3.50
2173 3191 4.162131 ACTTTGCAGGAACATCAAACCTTT 59.838 37.500 0.00 0.00 31.06 3.11
2174 3192 3.731652 TGCAGGAACATCAAACCTTTG 57.268 42.857 0.00 0.00 39.48 2.77
2189 3207 8.066612 TCAAACCTTTGATAATCTTTGATCCC 57.933 34.615 0.00 0.00 41.88 3.85
2190 3208 7.895429 TCAAACCTTTGATAATCTTTGATCCCT 59.105 33.333 0.00 0.00 41.88 4.20
2191 3209 7.651027 AACCTTTGATAATCTTTGATCCCTG 57.349 36.000 0.00 0.00 0.00 4.45
2192 3210 6.973642 ACCTTTGATAATCTTTGATCCCTGA 58.026 36.000 0.00 0.00 0.00 3.86
2193 3211 7.413446 ACCTTTGATAATCTTTGATCCCTGAA 58.587 34.615 0.00 0.00 0.00 3.02
2194 3212 7.895429 ACCTTTGATAATCTTTGATCCCTGAAA 59.105 33.333 0.00 0.00 0.00 2.69
2195 3213 8.411683 CCTTTGATAATCTTTGATCCCTGAAAG 58.588 37.037 0.00 0.00 0.00 2.62
2196 3214 8.884124 TTTGATAATCTTTGATCCCTGAAAGT 57.116 30.769 3.88 0.00 32.11 2.66
2197 3215 8.884124 TTGATAATCTTTGATCCCTGAAAGTT 57.116 30.769 3.88 1.94 32.11 2.66
2198 3216 8.884124 TGATAATCTTTGATCCCTGAAAGTTT 57.116 30.769 3.88 0.00 32.11 2.66
2199 3217 8.960591 TGATAATCTTTGATCCCTGAAAGTTTC 58.039 33.333 8.75 8.75 32.11 2.78
2200 3218 8.884124 ATAATCTTTGATCCCTGAAAGTTTCA 57.116 30.769 17.16 17.16 38.17 2.69
2201 3219 6.581171 ATCTTTGATCCCTGAAAGTTTCAC 57.419 37.500 14.35 5.32 35.46 3.18
2202 3220 5.445069 TCTTTGATCCCTGAAAGTTTCACA 58.555 37.500 14.35 7.86 35.46 3.58
2203 3221 6.070656 TCTTTGATCCCTGAAAGTTTCACAT 58.929 36.000 14.35 6.89 35.46 3.21
2204 3222 6.550854 TCTTTGATCCCTGAAAGTTTCACATT 59.449 34.615 14.35 0.30 35.46 2.71
2205 3223 6.729690 TTGATCCCTGAAAGTTTCACATTT 57.270 33.333 14.35 0.65 35.46 2.32
2206 3224 6.729690 TGATCCCTGAAAGTTTCACATTTT 57.270 33.333 14.35 0.00 35.46 1.82
2207 3225 7.123355 TGATCCCTGAAAGTTTCACATTTTT 57.877 32.000 14.35 0.00 35.46 1.94
2245 3263 7.565190 ATGAATATACTGATCATGAGGGTGT 57.435 36.000 0.09 1.20 32.77 4.16
2246 3264 8.670521 ATGAATATACTGATCATGAGGGTGTA 57.329 34.615 0.09 3.38 32.77 2.90
2247 3265 8.127150 TGAATATACTGATCATGAGGGTGTAG 57.873 38.462 0.09 0.00 0.00 2.74
2248 3266 7.179160 TGAATATACTGATCATGAGGGTGTAGG 59.821 40.741 0.09 0.00 0.00 3.18
2249 3267 3.404869 ACTGATCATGAGGGTGTAGGA 57.595 47.619 0.09 0.00 0.00 2.94
2250 3268 3.303938 ACTGATCATGAGGGTGTAGGAG 58.696 50.000 0.09 0.00 0.00 3.69
2251 3269 2.036992 CTGATCATGAGGGTGTAGGAGC 59.963 54.545 0.09 0.00 0.00 4.70
2252 3270 2.042464 GATCATGAGGGTGTAGGAGCA 58.958 52.381 0.09 0.00 0.00 4.26
2253 3271 1.195115 TCATGAGGGTGTAGGAGCAC 58.805 55.000 0.00 0.00 38.56 4.40
2259 3277 2.682494 GTGTAGGAGCACCCGGGA 60.682 66.667 32.02 0.00 40.87 5.14
2260 3278 2.363795 TGTAGGAGCACCCGGGAG 60.364 66.667 32.02 22.90 40.87 4.30
2261 3279 3.851128 GTAGGAGCACCCGGGAGC 61.851 72.222 33.07 33.07 40.87 4.70
2262 3280 4.075793 TAGGAGCACCCGGGAGCT 62.076 66.667 41.02 41.02 44.25 4.09
2265 3283 4.021925 GAGCACCCGGGAGCTGTT 62.022 66.667 44.48 25.40 41.81 3.16
2266 3284 3.553095 GAGCACCCGGGAGCTGTTT 62.553 63.158 44.48 25.02 41.81 2.83
2267 3285 3.365265 GCACCCGGGAGCTGTTTG 61.365 66.667 32.83 17.51 0.00 2.93
2268 3286 2.429930 CACCCGGGAGCTGTTTGA 59.570 61.111 32.02 0.00 0.00 2.69
2269 3287 1.966451 CACCCGGGAGCTGTTTGAC 60.966 63.158 32.02 0.00 0.00 3.18
2270 3288 2.429930 CCCGGGAGCTGTTTGACA 59.570 61.111 18.48 0.00 0.00 3.58
2271 3289 1.002134 CCCGGGAGCTGTTTGACAT 60.002 57.895 18.48 0.00 0.00 3.06
2272 3290 0.609131 CCCGGGAGCTGTTTGACATT 60.609 55.000 18.48 0.00 0.00 2.71
2273 3291 1.247567 CCGGGAGCTGTTTGACATTT 58.752 50.000 0.00 0.00 0.00 2.32
2274 3292 1.200020 CCGGGAGCTGTTTGACATTTC 59.800 52.381 0.00 0.00 0.00 2.17
2275 3293 2.154462 CGGGAGCTGTTTGACATTTCT 58.846 47.619 0.00 0.00 0.00 2.52
2276 3294 2.160417 CGGGAGCTGTTTGACATTTCTC 59.840 50.000 0.00 0.00 0.00 2.87
2277 3295 3.416156 GGGAGCTGTTTGACATTTCTCT 58.584 45.455 0.00 0.00 0.00 3.10
2278 3296 3.823304 GGGAGCTGTTTGACATTTCTCTT 59.177 43.478 0.00 0.00 0.00 2.85
2279 3297 4.279420 GGGAGCTGTTTGACATTTCTCTTT 59.721 41.667 0.00 0.00 0.00 2.52
2280 3298 5.456265 GGAGCTGTTTGACATTTCTCTTTC 58.544 41.667 0.00 0.00 0.00 2.62
2281 3299 5.009010 GGAGCTGTTTGACATTTCTCTTTCA 59.991 40.000 0.00 0.00 0.00 2.69
2282 3300 6.069684 AGCTGTTTGACATTTCTCTTTCAG 57.930 37.500 0.00 0.00 0.00 3.02
2283 3301 5.824624 AGCTGTTTGACATTTCTCTTTCAGA 59.175 36.000 0.00 0.00 0.00 3.27
2284 3302 6.319658 AGCTGTTTGACATTTCTCTTTCAGAA 59.680 34.615 0.00 0.00 39.56 3.02
2285 3303 7.014038 AGCTGTTTGACATTTCTCTTTCAGAAT 59.986 33.333 0.00 0.00 41.02 2.40
2286 3304 8.292448 GCTGTTTGACATTTCTCTTTCAGAATA 58.708 33.333 0.00 0.00 41.02 1.75
2311 3329 2.826674 TGGAAAATCCAGATGGGGAC 57.173 50.000 0.00 0.00 42.67 4.46
2330 3348 2.949909 ATGGACGGCGTTACCAGCA 61.950 57.895 22.47 3.10 39.03 4.41
2382 5016 5.865085 TGAACTACATACTTCTTGTTGCCT 58.135 37.500 0.00 0.00 0.00 4.75
2384 5018 4.495422 ACTACATACTTCTTGTTGCCTCG 58.505 43.478 0.00 0.00 0.00 4.63
2439 5075 9.205513 AGTTAATATGAGCCATCAATTTTTCCT 57.794 29.630 0.00 0.00 39.39 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.347661 CGCTTCGACAGAAACAACAGAC 60.348 50.000 0.00 0.00 35.71 3.51
14 15 1.070577 CCGCTTCGACAGAAACAACAG 60.071 52.381 0.00 0.00 35.71 3.16
141 142 4.318071 CGCATCTTACAAAACACAACATCG 59.682 41.667 0.00 0.00 0.00 3.84
149 150 4.377943 CGGTGAATCGCATCTTACAAAACA 60.378 41.667 0.00 0.00 0.00 2.83
171 172 0.384725 CAAGAAGCGACCAAGCAACG 60.385 55.000 0.00 0.00 40.15 4.10
190 191 6.649141 TGATTTACTACATGTCACCAGTTCAC 59.351 38.462 0.00 0.00 0.00 3.18
267 510 3.804036 AGCAAAGTAACAGCAGTACACA 58.196 40.909 0.00 0.00 0.00 3.72
276 519 6.551385 ACAAGATTCAGAGCAAAGTAACAG 57.449 37.500 0.00 0.00 0.00 3.16
304 578 6.015772 CCTTAGCTAGTTTCCAGAGAGGTATC 60.016 46.154 0.00 0.00 39.02 2.24
331 605 7.961351 TCCAAAATTTCCTGCTTTTCAATAGA 58.039 30.769 0.00 0.00 0.00 1.98
332 606 7.148523 GCTCCAAAATTTCCTGCTTTTCAATAG 60.149 37.037 0.00 0.00 0.00 1.73
333 607 6.650390 GCTCCAAAATTTCCTGCTTTTCAATA 59.350 34.615 0.00 0.00 0.00 1.90
334 608 5.471116 GCTCCAAAATTTCCTGCTTTTCAAT 59.529 36.000 0.00 0.00 0.00 2.57
375 998 1.315690 CCGGTATCCTAGCTCGACAA 58.684 55.000 0.00 0.00 0.00 3.18
376 999 0.536687 CCCGGTATCCTAGCTCGACA 60.537 60.000 0.00 0.00 0.00 4.35
377 1000 0.536915 ACCCGGTATCCTAGCTCGAC 60.537 60.000 0.00 0.00 0.00 4.20
378 1001 1.059098 TACCCGGTATCCTAGCTCGA 58.941 55.000 0.00 0.00 0.00 4.04
379 1002 1.811359 CTTACCCGGTATCCTAGCTCG 59.189 57.143 0.00 0.00 0.00 5.03
380 1003 2.557490 CACTTACCCGGTATCCTAGCTC 59.443 54.545 0.00 0.00 0.00 4.09
381 1004 2.176364 TCACTTACCCGGTATCCTAGCT 59.824 50.000 0.00 0.00 0.00 3.32
382 1005 2.557490 CTCACTTACCCGGTATCCTAGC 59.443 54.545 0.00 0.00 0.00 3.42
383 1006 3.830121 ACTCACTTACCCGGTATCCTAG 58.170 50.000 0.00 0.00 0.00 3.02
384 1007 3.959495 ACTCACTTACCCGGTATCCTA 57.041 47.619 0.00 0.00 0.00 2.94
385 1008 2.842645 ACTCACTTACCCGGTATCCT 57.157 50.000 0.00 0.00 0.00 3.24
386 1009 3.900966 AAACTCACTTACCCGGTATCC 57.099 47.619 0.00 0.00 0.00 2.59
387 1010 4.572909 ACAAAACTCACTTACCCGGTATC 58.427 43.478 0.00 0.00 0.00 2.24
388 1011 4.572909 GACAAAACTCACTTACCCGGTAT 58.427 43.478 0.00 0.00 0.00 2.73
389 1012 3.552684 CGACAAAACTCACTTACCCGGTA 60.553 47.826 0.00 0.00 0.00 4.02
390 1013 2.804212 CGACAAAACTCACTTACCCGGT 60.804 50.000 0.00 0.00 0.00 5.28
391 1014 1.796459 CGACAAAACTCACTTACCCGG 59.204 52.381 0.00 0.00 0.00 5.73
392 1015 2.729882 CTCGACAAAACTCACTTACCCG 59.270 50.000 0.00 0.00 0.00 5.28
393 1016 2.479275 GCTCGACAAAACTCACTTACCC 59.521 50.000 0.00 0.00 0.00 3.69
394 1017 3.391049 AGCTCGACAAAACTCACTTACC 58.609 45.455 0.00 0.00 0.00 2.85
395 1018 4.621886 CCTAGCTCGACAAAACTCACTTAC 59.378 45.833 0.00 0.00 0.00 2.34
396 1019 4.521639 TCCTAGCTCGACAAAACTCACTTA 59.478 41.667 0.00 0.00 0.00 2.24
397 1020 3.321111 TCCTAGCTCGACAAAACTCACTT 59.679 43.478 0.00 0.00 0.00 3.16
398 1021 2.891580 TCCTAGCTCGACAAAACTCACT 59.108 45.455 0.00 0.00 0.00 3.41
399 1022 3.299340 TCCTAGCTCGACAAAACTCAC 57.701 47.619 0.00 0.00 0.00 3.51
400 1023 4.142227 GGTATCCTAGCTCGACAAAACTCA 60.142 45.833 0.00 0.00 0.00 3.41
401 1024 4.361420 GGTATCCTAGCTCGACAAAACTC 58.639 47.826 0.00 0.00 0.00 3.01
402 1025 3.181489 CGGTATCCTAGCTCGACAAAACT 60.181 47.826 0.00 0.00 0.00 2.66
403 1026 3.114065 CGGTATCCTAGCTCGACAAAAC 58.886 50.000 0.00 0.00 0.00 2.43
404 1027 2.100252 CCGGTATCCTAGCTCGACAAAA 59.900 50.000 0.00 0.00 0.00 2.44
405 1028 1.679680 CCGGTATCCTAGCTCGACAAA 59.320 52.381 0.00 0.00 0.00 2.83
426 1049 0.924090 CCATAGCTCAAACTCGTCGC 59.076 55.000 0.00 0.00 0.00 5.19
452 1075 4.489249 GCCTGTTGCATGCATGAC 57.511 55.556 30.64 19.86 40.77 3.06
491 1275 2.093447 CCTATTCCACTCTTCGCCTGTT 60.093 50.000 0.00 0.00 0.00 3.16
493 1277 1.808133 GCCTATTCCACTCTTCGCCTG 60.808 57.143 0.00 0.00 0.00 4.85
495 1279 0.178068 TGCCTATTCCACTCTTCGCC 59.822 55.000 0.00 0.00 0.00 5.54
498 1282 2.293170 GCCTTGCCTATTCCACTCTTC 58.707 52.381 0.00 0.00 0.00 2.87
499 1283 1.064389 GGCCTTGCCTATTCCACTCTT 60.064 52.381 0.00 0.00 46.69 2.85
500 1284 0.548510 GGCCTTGCCTATTCCACTCT 59.451 55.000 0.00 0.00 46.69 3.24
535 1356 8.788325 AGGGAGTACATAATAACAGTTCAAAC 57.212 34.615 0.00 0.00 0.00 2.93
540 1361 5.659971 ACGGAGGGAGTACATAATAACAGTT 59.340 40.000 0.00 0.00 0.00 3.16
549 1370 3.657398 TCAGAACGGAGGGAGTACATA 57.343 47.619 0.00 0.00 0.00 2.29
550 1371 2.526888 TCAGAACGGAGGGAGTACAT 57.473 50.000 0.00 0.00 0.00 2.29
553 1374 6.155565 TGAAATAAATCAGAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
555 1376 5.428253 TGAAATAAATCAGAACGGAGGGAG 58.572 41.667 0.00 0.00 0.00 4.30
556 1377 5.429681 TGAAATAAATCAGAACGGAGGGA 57.570 39.130 0.00 0.00 0.00 4.20
557 1378 6.509418 TTTGAAATAAATCAGAACGGAGGG 57.491 37.500 0.00 0.00 0.00 4.30
558 1379 8.863049 CAAATTTGAAATAAATCAGAACGGAGG 58.137 33.333 13.08 0.00 0.00 4.30
560 1381 9.973450 TTCAAATTTGAAATAAATCAGAACGGA 57.027 25.926 27.22 2.56 43.62 4.69
575 1396 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
576 1397 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
578 1399 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
580 1401 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
581 1402 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
582 1403 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
584 1405 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
585 1406 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
586 1407 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
587 1408 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
588 1409 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
590 1411 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
592 1413 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
593 1414 2.267188 TTCCGATTTACTCGTCGTGG 57.733 50.000 0.00 0.00 46.18 4.94
594 1415 2.534349 CCATTCCGATTTACTCGTCGTG 59.466 50.000 0.00 0.00 46.18 4.35
595 1416 2.424601 TCCATTCCGATTTACTCGTCGT 59.575 45.455 0.00 0.00 46.18 4.34
596 1417 3.043586 CTCCATTCCGATTTACTCGTCG 58.956 50.000 0.00 0.00 46.18 5.12
597 1418 3.381949 CCTCCATTCCGATTTACTCGTC 58.618 50.000 0.00 0.00 46.18 4.20
598 1419 2.102588 CCCTCCATTCCGATTTACTCGT 59.897 50.000 0.00 0.00 46.18 4.18
600 1421 3.388350 ACTCCCTCCATTCCGATTTACTC 59.612 47.826 0.00 0.00 0.00 2.59
601 1422 3.385115 ACTCCCTCCATTCCGATTTACT 58.615 45.455 0.00 0.00 0.00 2.24
602 1423 3.840124 ACTCCCTCCATTCCGATTTAC 57.160 47.619 0.00 0.00 0.00 2.01
603 1424 4.811498 TCTACTCCCTCCATTCCGATTTA 58.189 43.478 0.00 0.00 0.00 1.40
604 1425 3.654273 TCTACTCCCTCCATTCCGATTT 58.346 45.455 0.00 0.00 0.00 2.17
605 1426 3.330126 TCTACTCCCTCCATTCCGATT 57.670 47.619 0.00 0.00 0.00 3.34
606 1427 3.330126 TTCTACTCCCTCCATTCCGAT 57.670 47.619 0.00 0.00 0.00 4.18
607 1428 2.840640 TTCTACTCCCTCCATTCCGA 57.159 50.000 0.00 0.00 0.00 4.55
608 1429 2.965831 TGATTCTACTCCCTCCATTCCG 59.034 50.000 0.00 0.00 0.00 4.30
609 1430 5.372373 CTTTGATTCTACTCCCTCCATTCC 58.628 45.833 0.00 0.00 0.00 3.01
610 1431 4.819088 GCTTTGATTCTACTCCCTCCATTC 59.181 45.833 0.00 0.00 0.00 2.67
611 1432 4.228210 TGCTTTGATTCTACTCCCTCCATT 59.772 41.667 0.00 0.00 0.00 3.16
612 1433 3.782523 TGCTTTGATTCTACTCCCTCCAT 59.217 43.478 0.00 0.00 0.00 3.41
613 1434 3.181329 TGCTTTGATTCTACTCCCTCCA 58.819 45.455 0.00 0.00 0.00 3.86
614 1435 3.914426 TGCTTTGATTCTACTCCCTCC 57.086 47.619 0.00 0.00 0.00 4.30
615 1436 5.298026 GGATTTGCTTTGATTCTACTCCCTC 59.702 44.000 0.00 0.00 0.00 4.30
616 1437 5.044550 AGGATTTGCTTTGATTCTACTCCCT 60.045 40.000 0.00 0.00 0.00 4.20
617 1438 5.196695 AGGATTTGCTTTGATTCTACTCCC 58.803 41.667 0.00 0.00 0.00 4.30
618 1439 6.118852 AGAGGATTTGCTTTGATTCTACTCC 58.881 40.000 0.00 0.00 0.00 3.85
619 1440 6.820656 TGAGAGGATTTGCTTTGATTCTACTC 59.179 38.462 0.00 0.00 0.00 2.59
620 1441 6.715280 TGAGAGGATTTGCTTTGATTCTACT 58.285 36.000 0.00 0.00 0.00 2.57
717 1583 5.760253 CCGATTGGCTAGTGATTAAACTCAT 59.240 40.000 0.00 0.00 0.00 2.90
880 1746 3.243035 TGCACACACTGATTTGTTGCTAC 60.243 43.478 0.00 0.00 35.90 3.58
887 1753 5.051816 AGGAAAATTGCACACACTGATTTG 58.948 37.500 0.00 0.00 0.00 2.32
894 1760 1.686052 TGGGAGGAAAATTGCACACAC 59.314 47.619 0.00 0.00 0.00 3.82
897 1763 5.721000 AGATAAATGGGAGGAAAATTGCACA 59.279 36.000 0.00 0.00 0.00 4.57
898 1764 6.225981 AGATAAATGGGAGGAAAATTGCAC 57.774 37.500 0.00 0.00 0.00 4.57
902 1768 5.527582 CGTCGAGATAAATGGGAGGAAAATT 59.472 40.000 0.00 0.00 0.00 1.82
925 1791 8.235226 AGATGGTATATATGTACAAGAACGTCG 58.765 37.037 11.25 0.00 0.00 5.12
930 1796 9.524496 ACGGTAGATGGTATATATGTACAAGAA 57.476 33.333 11.25 0.00 0.00 2.52
954 1820 2.124903 GCAGACGGGATTGTATGTACG 58.875 52.381 0.00 0.00 33.70 3.67
960 1826 1.855295 TGGTAGCAGACGGGATTGTA 58.145 50.000 0.00 0.00 0.00 2.41
986 1856 1.544724 CCCCATGGTTTTCGATGTGT 58.455 50.000 11.73 0.00 34.85 3.72
987 1857 0.173255 GCCCCATGGTTTTCGATGTG 59.827 55.000 11.73 0.00 34.85 3.21
1059 1929 1.135053 GTGTCCTCTAAGACGGAAGCC 60.135 57.143 0.00 0.00 39.77 4.35
1109 1979 0.317938 GCAGTAGTCGTAGCCGATGG 60.318 60.000 0.00 0.00 46.30 3.51
1222 2092 1.285023 GGATGCGCTTGATGATGCC 59.715 57.895 9.73 0.00 0.00 4.40
1437 2307 4.731853 TCCACGCCCATCTCCCCA 62.732 66.667 0.00 0.00 0.00 4.96
1739 2757 2.436417 CACCAGGACGTTTGAATCCAT 58.564 47.619 0.00 0.00 37.47 3.41
1740 2758 1.890876 CACCAGGACGTTTGAATCCA 58.109 50.000 0.00 0.00 37.47 3.41
1741 2759 0.521735 GCACCAGGACGTTTGAATCC 59.478 55.000 0.00 0.00 34.98 3.01
1742 2760 0.165944 CGCACCAGGACGTTTGAATC 59.834 55.000 0.00 0.00 0.00 2.52
1743 2761 0.250124 TCGCACCAGGACGTTTGAAT 60.250 50.000 0.00 0.00 0.00 2.57
1746 2764 2.935955 GTCGCACCAGGACGTTTG 59.064 61.111 0.00 0.00 0.00 2.93
1784 2802 2.096248 TGACCCAACAAACTGACCAAC 58.904 47.619 0.00 0.00 0.00 3.77
1795 2813 1.834263 CCCAAAAACCTTGACCCAACA 59.166 47.619 0.00 0.00 0.00 3.33
1839 2857 6.624352 AGCGAATACGTTCTTACTATGGTA 57.376 37.500 0.00 0.00 41.98 3.25
1840 2858 5.511234 AGCGAATACGTTCTTACTATGGT 57.489 39.130 0.00 0.00 41.98 3.55
1841 2859 5.175126 CCAAGCGAATACGTTCTTACTATGG 59.825 44.000 0.00 0.00 41.98 2.74
1842 2860 5.175126 CCCAAGCGAATACGTTCTTACTATG 59.825 44.000 0.00 0.00 41.98 2.23
1843 2861 5.068198 TCCCAAGCGAATACGTTCTTACTAT 59.932 40.000 0.00 0.00 41.98 2.12
1844 2862 4.398988 TCCCAAGCGAATACGTTCTTACTA 59.601 41.667 0.00 0.00 41.98 1.82
1845 2863 3.194116 TCCCAAGCGAATACGTTCTTACT 59.806 43.478 0.00 0.00 41.98 2.24
1846 2864 3.514645 TCCCAAGCGAATACGTTCTTAC 58.485 45.455 0.00 0.00 41.98 2.34
1847 2865 3.444742 TCTCCCAAGCGAATACGTTCTTA 59.555 43.478 0.00 0.00 41.98 2.10
1848 2866 2.232941 TCTCCCAAGCGAATACGTTCTT 59.767 45.455 0.00 0.00 41.98 2.52
1849 2867 1.822990 TCTCCCAAGCGAATACGTTCT 59.177 47.619 0.00 0.00 41.98 3.01
1850 2868 2.288961 TCTCCCAAGCGAATACGTTC 57.711 50.000 0.00 0.00 41.98 3.95
1851 2869 2.754946 TTCTCCCAAGCGAATACGTT 57.245 45.000 0.00 0.00 41.98 3.99
1852 2870 2.550978 CATTCTCCCAAGCGAATACGT 58.449 47.619 0.00 0.00 41.98 3.57
1853 2871 1.867233 CCATTCTCCCAAGCGAATACG 59.133 52.381 0.00 0.00 42.93 3.06
1854 2872 2.919228 ACCATTCTCCCAAGCGAATAC 58.081 47.619 0.00 0.00 0.00 1.89
1897 2915 1.529713 GGCACCCGGGTCTGAAAAA 60.530 57.895 27.51 0.00 0.00 1.94
1898 2916 2.114411 GGCACCCGGGTCTGAAAA 59.886 61.111 27.51 0.00 0.00 2.29
1911 2929 0.759346 CATAGAGGGTGTAGGGGCAC 59.241 60.000 0.00 0.00 38.56 5.01
1912 2930 0.639943 TCATAGAGGGTGTAGGGGCA 59.360 55.000 0.00 0.00 0.00 5.36
1913 2931 1.416772 GTTCATAGAGGGTGTAGGGGC 59.583 57.143 0.00 0.00 0.00 5.80
1914 2932 2.700897 CTGTTCATAGAGGGTGTAGGGG 59.299 54.545 0.00 0.00 0.00 4.79
1915 2933 3.375699 ACTGTTCATAGAGGGTGTAGGG 58.624 50.000 0.00 0.00 0.00 3.53
1916 2934 6.540438 TTTACTGTTCATAGAGGGTGTAGG 57.460 41.667 0.00 0.00 0.00 3.18
1917 2935 8.258007 TGAATTTACTGTTCATAGAGGGTGTAG 58.742 37.037 0.00 0.00 31.07 2.74
1918 2936 8.141298 TGAATTTACTGTTCATAGAGGGTGTA 57.859 34.615 0.00 0.00 31.07 2.90
1919 2937 7.016153 TGAATTTACTGTTCATAGAGGGTGT 57.984 36.000 0.00 0.00 31.07 4.16
1920 2938 7.921786 TTGAATTTACTGTTCATAGAGGGTG 57.078 36.000 0.00 0.00 35.68 4.61
1921 2939 8.934023 TTTTGAATTTACTGTTCATAGAGGGT 57.066 30.769 0.00 0.00 35.68 4.34
1968 2986 6.099557 TCCATGTCCCAAAGTTTCAGATTTTT 59.900 34.615 0.00 0.00 0.00 1.94
1969 2987 5.602145 TCCATGTCCCAAAGTTTCAGATTTT 59.398 36.000 0.00 0.00 0.00 1.82
1970 2988 5.147032 TCCATGTCCCAAAGTTTCAGATTT 58.853 37.500 0.00 0.00 0.00 2.17
1971 2989 4.739793 TCCATGTCCCAAAGTTTCAGATT 58.260 39.130 0.00 0.00 0.00 2.40
1972 2990 4.387026 TCCATGTCCCAAAGTTTCAGAT 57.613 40.909 0.00 0.00 0.00 2.90
1973 2991 3.874383 TCCATGTCCCAAAGTTTCAGA 57.126 42.857 0.00 0.00 0.00 3.27
1974 2992 3.636300 TGTTCCATGTCCCAAAGTTTCAG 59.364 43.478 0.00 0.00 0.00 3.02
1975 2993 3.636679 TGTTCCATGTCCCAAAGTTTCA 58.363 40.909 0.00 0.00 0.00 2.69
1976 2994 4.142049 TGTTGTTCCATGTCCCAAAGTTTC 60.142 41.667 0.00 0.00 0.00 2.78
1977 2995 3.772025 TGTTGTTCCATGTCCCAAAGTTT 59.228 39.130 0.00 0.00 0.00 2.66
1978 2996 3.370104 TGTTGTTCCATGTCCCAAAGTT 58.630 40.909 0.00 0.00 0.00 2.66
1979 2997 3.025322 TGTTGTTCCATGTCCCAAAGT 57.975 42.857 0.00 0.00 0.00 2.66
1980 2998 3.573538 TCATGTTGTTCCATGTCCCAAAG 59.426 43.478 0.00 0.00 42.29 2.77
1981 2999 3.570540 TCATGTTGTTCCATGTCCCAAA 58.429 40.909 0.00 0.00 42.29 3.28
1982 3000 3.235750 TCATGTTGTTCCATGTCCCAA 57.764 42.857 0.00 0.00 42.29 4.12
1983 3001 2.967745 TCATGTTGTTCCATGTCCCA 57.032 45.000 0.00 0.00 42.29 4.37
1984 3002 3.573967 AGTTTCATGTTGTTCCATGTCCC 59.426 43.478 0.00 0.00 42.29 4.46
1985 3003 4.853924 AGTTTCATGTTGTTCCATGTCC 57.146 40.909 0.00 0.00 42.29 4.02
1986 3004 6.756074 TCAAAAGTTTCATGTTGTTCCATGTC 59.244 34.615 0.00 0.00 42.29 3.06
1987 3005 6.638610 TCAAAAGTTTCATGTTGTTCCATGT 58.361 32.000 0.00 0.00 42.29 3.21
1988 3006 7.438757 TCATCAAAAGTTTCATGTTGTTCCATG 59.561 33.333 0.00 0.00 42.89 3.66
1989 3007 7.499292 TCATCAAAAGTTTCATGTTGTTCCAT 58.501 30.769 0.00 0.00 0.00 3.41
1990 3008 6.871844 TCATCAAAAGTTTCATGTTGTTCCA 58.128 32.000 0.00 0.00 0.00 3.53
1991 3009 7.869429 AGATCATCAAAAGTTTCATGTTGTTCC 59.131 33.333 0.00 0.00 0.00 3.62
1992 3010 8.807667 AGATCATCAAAAGTTTCATGTTGTTC 57.192 30.769 0.00 5.12 0.00 3.18
1993 3011 9.037737 CAAGATCATCAAAAGTTTCATGTTGTT 57.962 29.630 0.00 2.99 0.00 2.83
1994 3012 7.170320 GCAAGATCATCAAAAGTTTCATGTTGT 59.830 33.333 0.00 0.00 0.00 3.32
1995 3013 7.170151 TGCAAGATCATCAAAAGTTTCATGTTG 59.830 33.333 0.00 6.33 0.00 3.33
1996 3014 7.211573 TGCAAGATCATCAAAAGTTTCATGTT 58.788 30.769 0.00 1.07 0.00 2.71
1997 3015 6.751157 TGCAAGATCATCAAAAGTTTCATGT 58.249 32.000 0.00 0.00 0.00 3.21
1998 3016 7.646446 TTGCAAGATCATCAAAAGTTTCATG 57.354 32.000 0.00 0.00 0.00 3.07
1999 3017 8.665643 TTTTGCAAGATCATCAAAAGTTTCAT 57.334 26.923 0.00 0.00 35.53 2.57
2000 3018 8.665643 ATTTTGCAAGATCATCAAAAGTTTCA 57.334 26.923 18.08 3.11 41.23 2.69
2001 3019 9.940166 AAATTTTGCAAGATCATCAAAAGTTTC 57.060 25.926 18.25 0.00 41.85 2.78
2005 3023 9.537848 GCTAAAATTTTGCAAGATCATCAAAAG 57.462 29.630 13.76 10.00 41.23 2.27
2006 3024 9.275398 AGCTAAAATTTTGCAAGATCATCAAAA 57.725 25.926 13.76 16.54 41.86 2.44
2007 3025 8.836268 AGCTAAAATTTTGCAAGATCATCAAA 57.164 26.923 13.76 0.00 0.00 2.69
2008 3026 9.926158 TTAGCTAAAATTTTGCAAGATCATCAA 57.074 25.926 13.76 0.00 0.00 2.57
2009 3027 9.926158 TTTAGCTAAAATTTTGCAAGATCATCA 57.074 25.926 16.53 0.00 0.00 3.07
2026 3044 9.769093 GCTCTTCGAATGTTATTTTTAGCTAAA 57.231 29.630 14.96 14.96 0.00 1.85
2027 3045 8.941977 TGCTCTTCGAATGTTATTTTTAGCTAA 58.058 29.630 0.86 0.86 0.00 3.09
2028 3046 8.388103 GTGCTCTTCGAATGTTATTTTTAGCTA 58.612 33.333 0.00 0.00 0.00 3.32
2029 3047 7.119846 AGTGCTCTTCGAATGTTATTTTTAGCT 59.880 33.333 0.00 0.00 0.00 3.32
2030 3048 7.217070 CAGTGCTCTTCGAATGTTATTTTTAGC 59.783 37.037 0.00 0.00 0.00 3.09
2031 3049 8.443160 TCAGTGCTCTTCGAATGTTATTTTTAG 58.557 33.333 0.00 0.00 0.00 1.85
2032 3050 8.317891 TCAGTGCTCTTCGAATGTTATTTTTA 57.682 30.769 0.00 0.00 0.00 1.52
2033 3051 7.202016 TCAGTGCTCTTCGAATGTTATTTTT 57.798 32.000 0.00 0.00 0.00 1.94
2034 3052 6.801539 TCAGTGCTCTTCGAATGTTATTTT 57.198 33.333 0.00 0.00 0.00 1.82
2035 3053 6.801539 TTCAGTGCTCTTCGAATGTTATTT 57.198 33.333 0.00 0.00 0.00 1.40
2036 3054 6.801539 TTTCAGTGCTCTTCGAATGTTATT 57.198 33.333 0.00 0.00 0.00 1.40
2037 3055 6.992063 ATTTCAGTGCTCTTCGAATGTTAT 57.008 33.333 0.00 0.00 0.00 1.89
2038 3056 7.899178 TTATTTCAGTGCTCTTCGAATGTTA 57.101 32.000 0.00 0.00 0.00 2.41
2039 3057 6.801539 TTATTTCAGTGCTCTTCGAATGTT 57.198 33.333 0.00 0.00 0.00 2.71
2040 3058 6.801539 TTTATTTCAGTGCTCTTCGAATGT 57.198 33.333 0.00 0.00 0.00 2.71
2079 3097 9.809096 TGCTCAAAAATGTACATAAACTTTGAA 57.191 25.926 22.42 13.83 32.61 2.69
2080 3098 9.462174 CTGCTCAAAAATGTACATAAACTTTGA 57.538 29.630 21.64 21.64 32.20 2.69
2081 3099 9.248291 ACTGCTCAAAAATGTACATAAACTTTG 57.752 29.630 9.21 15.07 0.00 2.77
2082 3100 9.248291 CACTGCTCAAAAATGTACATAAACTTT 57.752 29.630 9.21 3.08 0.00 2.66
2083 3101 8.629158 TCACTGCTCAAAAATGTACATAAACTT 58.371 29.630 9.21 0.00 0.00 2.66
2084 3102 8.165239 TCACTGCTCAAAAATGTACATAAACT 57.835 30.769 9.21 0.00 0.00 2.66
2085 3103 8.970691 ATCACTGCTCAAAAATGTACATAAAC 57.029 30.769 9.21 0.00 0.00 2.01
2086 3104 9.979578 AAATCACTGCTCAAAAATGTACATAAA 57.020 25.926 9.21 0.00 0.00 1.40
2087 3105 9.979578 AAAATCACTGCTCAAAAATGTACATAA 57.020 25.926 9.21 0.00 0.00 1.90
2088 3106 9.979578 AAAAATCACTGCTCAAAAATGTACATA 57.020 25.926 9.21 0.00 0.00 2.29
2089 3107 8.891671 AAAAATCACTGCTCAAAAATGTACAT 57.108 26.923 1.41 1.41 0.00 2.29
2112 3130 3.913855 TGTGGAGCCCTCACAAAAA 57.086 47.368 2.46 0.00 41.50 1.94
2116 3134 1.352622 ACCTTTGTGGAGCCCTCACA 61.353 55.000 0.98 0.98 42.57 3.58
2117 3135 0.178990 AACCTTTGTGGAGCCCTCAC 60.179 55.000 0.00 0.00 39.71 3.51
2118 3136 1.440618 TAACCTTTGTGGAGCCCTCA 58.559 50.000 0.00 0.00 39.71 3.86
2119 3137 2.808906 ATAACCTTTGTGGAGCCCTC 57.191 50.000 0.00 0.00 39.71 4.30
2120 3138 3.165071 CAAATAACCTTTGTGGAGCCCT 58.835 45.455 0.00 0.00 39.71 5.19
2121 3139 2.897326 ACAAATAACCTTTGTGGAGCCC 59.103 45.455 2.75 0.00 40.70 5.19
2122 3140 4.306600 CAACAAATAACCTTTGTGGAGCC 58.693 43.478 4.27 0.00 41.30 4.70
2123 3141 3.740832 GCAACAAATAACCTTTGTGGAGC 59.259 43.478 8.95 7.92 41.30 4.70
2124 3142 5.200368 AGCAACAAATAACCTTTGTGGAG 57.800 39.130 8.95 2.85 41.30 3.86
2125 3143 5.606348 AAGCAACAAATAACCTTTGTGGA 57.394 34.783 8.95 0.00 41.30 4.02
2126 3144 7.494298 AGTTTAAGCAACAAATAACCTTTGTGG 59.506 33.333 4.27 2.91 41.30 4.17
2127 3145 8.419076 AGTTTAAGCAACAAATAACCTTTGTG 57.581 30.769 4.27 1.49 41.30 3.33
2128 3146 9.443323 AAAGTTTAAGCAACAAATAACCTTTGT 57.557 25.926 0.00 0.00 43.72 2.83
2129 3147 9.701355 CAAAGTTTAAGCAACAAATAACCTTTG 57.299 29.630 0.00 0.00 37.93 2.77
2130 3148 8.394877 GCAAAGTTTAAGCAACAAATAACCTTT 58.605 29.630 0.00 0.00 37.93 3.11
2131 3149 7.550906 TGCAAAGTTTAAGCAACAAATAACCTT 59.449 29.630 0.00 0.00 37.93 3.50
2132 3150 7.044798 TGCAAAGTTTAAGCAACAAATAACCT 58.955 30.769 0.00 0.00 37.93 3.50
2133 3151 7.240414 TGCAAAGTTTAAGCAACAAATAACC 57.760 32.000 0.00 0.00 37.93 2.85
2134 3152 7.223777 TCCTGCAAAGTTTAAGCAACAAATAAC 59.776 33.333 2.65 0.00 37.93 1.89
2135 3153 7.268586 TCCTGCAAAGTTTAAGCAACAAATAA 58.731 30.769 2.65 0.00 37.93 1.40
2136 3154 6.810911 TCCTGCAAAGTTTAAGCAACAAATA 58.189 32.000 2.65 0.00 37.93 1.40
2137 3155 5.669477 TCCTGCAAAGTTTAAGCAACAAAT 58.331 33.333 2.65 0.00 37.93 2.32
2138 3156 5.078411 TCCTGCAAAGTTTAAGCAACAAA 57.922 34.783 2.65 0.00 37.93 2.83
2139 3157 4.727507 TCCTGCAAAGTTTAAGCAACAA 57.272 36.364 2.65 0.00 37.93 2.83
2140 3158 4.081972 TGTTCCTGCAAAGTTTAAGCAACA 60.082 37.500 2.65 3.30 37.93 3.33
2141 3159 4.429108 TGTTCCTGCAAAGTTTAAGCAAC 58.571 39.130 2.65 1.03 37.89 4.17
2142 3160 4.727507 TGTTCCTGCAAAGTTTAAGCAA 57.272 36.364 2.65 0.00 37.89 3.91
2143 3161 4.340666 TGATGTTCCTGCAAAGTTTAAGCA 59.659 37.500 1.19 1.19 36.72 3.91
2144 3162 4.870363 TGATGTTCCTGCAAAGTTTAAGC 58.130 39.130 0.00 0.00 0.00 3.09
2145 3163 6.200854 GGTTTGATGTTCCTGCAAAGTTTAAG 59.799 38.462 0.00 0.00 32.76 1.85
2146 3164 6.045955 GGTTTGATGTTCCTGCAAAGTTTAA 58.954 36.000 0.00 0.00 32.76 1.52
2147 3165 5.362430 AGGTTTGATGTTCCTGCAAAGTTTA 59.638 36.000 0.00 0.00 32.76 2.01
2148 3166 4.162131 AGGTTTGATGTTCCTGCAAAGTTT 59.838 37.500 0.00 0.00 32.76 2.66
2149 3167 3.706086 AGGTTTGATGTTCCTGCAAAGTT 59.294 39.130 0.00 0.00 32.76 2.66
2150 3168 3.299503 AGGTTTGATGTTCCTGCAAAGT 58.700 40.909 0.00 0.00 32.76 2.66
2151 3169 4.326504 AAGGTTTGATGTTCCTGCAAAG 57.673 40.909 0.00 0.00 32.76 2.77
2152 3170 4.161189 TCAAAGGTTTGATGTTCCTGCAAA 59.839 37.500 0.87 0.00 41.88 3.68
2153 3171 3.703556 TCAAAGGTTTGATGTTCCTGCAA 59.296 39.130 0.87 0.00 41.88 4.08
2154 3172 3.295093 TCAAAGGTTTGATGTTCCTGCA 58.705 40.909 0.87 0.00 41.88 4.41
2165 3183 7.977853 CAGGGATCAAAGATTATCAAAGGTTTG 59.022 37.037 0.00 0.00 39.48 2.93
2166 3184 7.895429 TCAGGGATCAAAGATTATCAAAGGTTT 59.105 33.333 0.00 0.00 0.00 3.27
2167 3185 7.413446 TCAGGGATCAAAGATTATCAAAGGTT 58.587 34.615 0.00 0.00 0.00 3.50
2168 3186 6.973642 TCAGGGATCAAAGATTATCAAAGGT 58.026 36.000 0.00 0.00 0.00 3.50
2169 3187 7.886629 TTCAGGGATCAAAGATTATCAAAGG 57.113 36.000 0.00 0.00 0.00 3.11
2170 3188 8.964772 ACTTTCAGGGATCAAAGATTATCAAAG 58.035 33.333 9.54 0.00 34.30 2.77
2171 3189 8.884124 ACTTTCAGGGATCAAAGATTATCAAA 57.116 30.769 9.54 0.00 34.30 2.69
2172 3190 8.884124 AACTTTCAGGGATCAAAGATTATCAA 57.116 30.769 9.54 0.00 34.30 2.57
2173 3191 8.884124 AAACTTTCAGGGATCAAAGATTATCA 57.116 30.769 9.54 0.00 34.30 2.15
2174 3192 8.960591 TGAAACTTTCAGGGATCAAAGATTATC 58.039 33.333 9.54 0.00 34.08 1.75
2175 3193 8.743714 GTGAAACTTTCAGGGATCAAAGATTAT 58.256 33.333 4.36 0.00 41.01 1.28
2176 3194 7.723616 TGTGAAACTTTCAGGGATCAAAGATTA 59.276 33.333 4.36 0.00 41.01 1.75
2177 3195 6.550854 TGTGAAACTTTCAGGGATCAAAGATT 59.449 34.615 4.36 4.84 41.01 2.40
2178 3196 6.070656 TGTGAAACTTTCAGGGATCAAAGAT 58.929 36.000 4.36 0.00 41.01 2.40
2179 3197 5.445069 TGTGAAACTTTCAGGGATCAAAGA 58.555 37.500 4.36 0.00 41.01 2.52
2180 3198 5.772825 TGTGAAACTTTCAGGGATCAAAG 57.227 39.130 4.36 0.00 41.01 2.77
2181 3199 6.729690 AATGTGAAACTTTCAGGGATCAAA 57.270 33.333 4.36 0.00 41.01 2.69
2182 3200 6.729690 AAATGTGAAACTTTCAGGGATCAA 57.270 33.333 4.36 0.00 41.01 2.57
2183 3201 6.729690 AAAATGTGAAACTTTCAGGGATCA 57.270 33.333 4.36 0.00 41.01 2.92
2219 3237 9.276791 ACACCCTCATGATCAGTATATTCATAT 57.723 33.333 0.09 0.00 0.00 1.78
2220 3238 8.670521 ACACCCTCATGATCAGTATATTCATA 57.329 34.615 0.09 0.00 0.00 2.15
2221 3239 7.565190 ACACCCTCATGATCAGTATATTCAT 57.435 36.000 0.09 0.00 0.00 2.57
2222 3240 7.179160 CCTACACCCTCATGATCAGTATATTCA 59.821 40.741 0.09 0.00 0.00 2.57
2223 3241 7.397476 TCCTACACCCTCATGATCAGTATATTC 59.603 40.741 0.09 0.00 0.00 1.75
2224 3242 7.248976 TCCTACACCCTCATGATCAGTATATT 58.751 38.462 0.09 0.00 0.00 1.28
2225 3243 6.805150 TCCTACACCCTCATGATCAGTATAT 58.195 40.000 0.09 0.00 0.00 0.86
2226 3244 6.214177 TCCTACACCCTCATGATCAGTATA 57.786 41.667 0.09 0.00 0.00 1.47
2227 3245 5.079998 TCCTACACCCTCATGATCAGTAT 57.920 43.478 0.09 0.00 0.00 2.12
2228 3246 4.474394 CTCCTACACCCTCATGATCAGTA 58.526 47.826 0.09 0.00 0.00 2.74
2229 3247 3.303938 CTCCTACACCCTCATGATCAGT 58.696 50.000 0.09 0.00 0.00 3.41
2230 3248 2.036992 GCTCCTACACCCTCATGATCAG 59.963 54.545 0.09 0.00 0.00 2.90
2231 3249 2.042464 GCTCCTACACCCTCATGATCA 58.958 52.381 0.00 0.00 0.00 2.92
2232 3250 2.042464 TGCTCCTACACCCTCATGATC 58.958 52.381 0.00 0.00 0.00 2.92
2233 3251 1.765314 GTGCTCCTACACCCTCATGAT 59.235 52.381 0.00 0.00 34.35 2.45
2234 3252 1.195115 GTGCTCCTACACCCTCATGA 58.805 55.000 0.00 0.00 34.35 3.07
2235 3253 3.768633 GTGCTCCTACACCCTCATG 57.231 57.895 0.00 0.00 34.35 3.07
2242 3260 2.682494 TCCCGGGTGCTCCTACAC 60.682 66.667 22.86 0.00 39.94 2.90
2243 3261 2.363795 CTCCCGGGTGCTCCTACA 60.364 66.667 22.86 0.00 0.00 2.74
2244 3262 3.851128 GCTCCCGGGTGCTCCTAC 61.851 72.222 34.81 9.82 0.00 3.18
2245 3263 4.075793 AGCTCCCGGGTGCTCCTA 62.076 66.667 38.17 10.03 40.37 2.94
2248 3266 3.553095 AAACAGCTCCCGGGTGCTC 62.553 63.158 40.25 18.25 46.30 4.26
2249 3267 3.570212 AAACAGCTCCCGGGTGCT 61.570 61.111 38.17 38.17 46.30 4.40
2250 3268 3.365265 CAAACAGCTCCCGGGTGC 61.365 66.667 35.10 35.10 46.30 5.01
2252 3270 1.779061 ATGTCAAACAGCTCCCGGGT 61.779 55.000 22.86 0.00 0.00 5.28
2253 3271 0.609131 AATGTCAAACAGCTCCCGGG 60.609 55.000 16.85 16.85 0.00 5.73
2254 3272 1.200020 GAAATGTCAAACAGCTCCCGG 59.800 52.381 0.00 0.00 0.00 5.73
2255 3273 2.154462 AGAAATGTCAAACAGCTCCCG 58.846 47.619 0.00 0.00 0.00 5.14
2256 3274 3.416156 AGAGAAATGTCAAACAGCTCCC 58.584 45.455 0.00 0.00 30.15 4.30
2257 3275 5.009010 TGAAAGAGAAATGTCAAACAGCTCC 59.991 40.000 0.00 0.00 30.15 4.70
2258 3276 6.017605 TCTGAAAGAGAAATGTCAAACAGCTC 60.018 38.462 0.00 0.00 38.67 4.09
2259 3277 5.824624 TCTGAAAGAGAAATGTCAAACAGCT 59.175 36.000 0.00 0.00 38.67 4.24
2260 3278 6.064846 TCTGAAAGAGAAATGTCAAACAGC 57.935 37.500 0.00 0.00 38.67 4.40
2275 3293 8.906867 GGATTTTCCATGACATATTCTGAAAGA 58.093 33.333 0.00 0.00 37.65 2.52
2276 3294 8.689061 TGGATTTTCCATGACATATTCTGAAAG 58.311 33.333 0.00 0.00 42.67 2.62
2277 3295 8.592529 TGGATTTTCCATGACATATTCTGAAA 57.407 30.769 0.00 0.00 42.67 2.69
2311 3329 2.461110 GCTGGTAACGCCGTCCATG 61.461 63.158 0.00 0.00 41.21 3.66
2330 3348 4.460382 ACCTTCAAGAATTTCGTGCATCAT 59.540 37.500 7.37 0.00 0.00 2.45
2382 5016 4.481930 AAATTTGCTCATCACGAAACGA 57.518 36.364 0.00 0.00 0.00 3.85
2384 5018 7.008628 CCATCTTAAATTTGCTCATCACGAAAC 59.991 37.037 0.00 0.00 0.00 2.78
2439 5075 4.080582 AGACACATTCGACCCATTGGATTA 60.081 41.667 3.62 0.00 34.81 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.