Multiple sequence alignment - TraesCS2B01G503100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G503100 chr2B 100.000 2921 0 0 538 3458 697546197 697549117 0.000000e+00 5395.0
1 TraesCS2B01G503100 chr2B 88.194 1423 139 20 1048 2468 697665490 697666885 0.000000e+00 1670.0
2 TraesCS2B01G503100 chr2B 75.598 1463 257 59 1046 2456 135026376 135024962 1.750000e-177 632.0
3 TraesCS2B01G503100 chr2B 83.441 465 65 8 3005 3458 773784777 773784314 4.130000e-114 422.0
4 TraesCS2B01G503100 chr2B 83.011 465 67 8 3005 3458 773787800 773787337 8.930000e-111 411.0
5 TraesCS2B01G503100 chr2B 90.148 203 12 3 538 740 555327084 555326890 1.230000e-64 257.0
6 TraesCS2B01G503100 chr2B 100.000 134 0 0 1 134 697545660 697545793 7.410000e-62 248.0
7 TraesCS2B01G503100 chr2B 91.111 180 9 3 538 717 23637814 23637642 1.600000e-58 237.0
8 TraesCS2B01G503100 chr2B 89.552 134 14 0 1 134 66013468 66013335 1.650000e-38 171.0
9 TraesCS2B01G503100 chr2B 80.905 199 32 5 2002 2197 6179689 6179884 5.980000e-33 152.0
10 TraesCS2B01G503100 chr2B 92.632 95 7 0 2853 2947 773787911 773787817 1.670000e-28 137.0
11 TraesCS2B01G503100 chr2B 93.506 77 5 0 2871 2947 773784870 773784794 7.840000e-22 115.0
12 TraesCS2B01G503100 chr2D 93.699 1730 97 9 830 2550 579571020 579572746 0.000000e+00 2580.0
13 TraesCS2B01G503100 chr2D 87.702 1423 147 19 1048 2468 579740527 579741923 0.000000e+00 1633.0
14 TraesCS2B01G503100 chr2D 75.978 1482 266 61 1037 2460 84742968 84744417 0.000000e+00 682.0
15 TraesCS2B01G503100 chr2A 93.941 1667 94 3 830 2489 717200116 717201782 0.000000e+00 2512.0
16 TraesCS2B01G503100 chr2A 88.584 1419 129 18 1048 2466 717252989 717254374 0.000000e+00 1692.0
17 TraesCS2B01G503100 chr2A 75.978 1457 252 68 1037 2431 85291740 85293160 0.000000e+00 662.0
18 TraesCS2B01G503100 chr4A 97.406 848 22 0 2609 3456 492383620 492382773 0.000000e+00 1445.0
19 TraesCS2B01G503100 chrUn 88.596 228 17 5 538 763 383916502 383916722 5.690000e-68 268.0
20 TraesCS2B01G503100 chrUn 87.805 82 10 0 2 83 475490867 475490786 2.840000e-16 97.1
21 TraesCS2B01G503100 chr7B 90.148 203 12 4 539 740 377325551 377325746 1.230000e-64 257.0
22 TraesCS2B01G503100 chr7B 93.478 46 3 0 2551 2596 144288770 144288815 6.190000e-08 69.4
23 TraesCS2B01G503100 chr6D 87.879 231 12 4 545 775 38572845 38572631 1.230000e-64 257.0
24 TraesCS2B01G503100 chr6D 93.893 131 8 0 3 133 38573630 38573500 7.570000e-47 198.0
25 TraesCS2B01G503100 chr4B 89.604 202 13 4 539 740 488362845 488363038 2.060000e-62 250.0
26 TraesCS2B01G503100 chr4B 89.604 202 14 2 539 740 640576005 640576199 2.060000e-62 250.0
27 TraesCS2B01G503100 chr1B 91.304 184 8 3 539 721 635433733 635433557 9.590000e-61 244.0
28 TraesCS2B01G503100 chr1B 87.179 195 15 5 546 740 531616793 531616609 2.700000e-51 213.0
29 TraesCS2B01G503100 chr1B 91.045 134 12 0 1 134 635433925 635433792 7.620000e-42 182.0
30 TraesCS2B01G503100 chr1B 88.710 124 14 0 11 134 128819113 128819236 5.980000e-33 152.0
31 TraesCS2B01G503100 chr6A 91.791 134 11 0 1 134 387969707 387969574 1.640000e-43 187.0
32 TraesCS2B01G503100 chr5B 85.926 135 16 3 1 134 535061934 535061802 1.290000e-29 141.0
33 TraesCS2B01G503100 chr7A 90.909 55 5 0 2542 2596 108504443 108504497 1.330000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G503100 chr2B 697545660 697549117 3457 False 2821.50 5395 100.0000 1 3458 2 chr2B.!!$F3 3457
1 TraesCS2B01G503100 chr2B 697665490 697666885 1395 False 1670.00 1670 88.1940 1048 2468 1 chr2B.!!$F2 1420
2 TraesCS2B01G503100 chr2B 135024962 135026376 1414 True 632.00 632 75.5980 1046 2456 1 chr2B.!!$R3 1410
3 TraesCS2B01G503100 chr2B 773784314 773787911 3597 True 271.25 422 88.1475 2853 3458 4 chr2B.!!$R5 605
4 TraesCS2B01G503100 chr2D 579571020 579572746 1726 False 2580.00 2580 93.6990 830 2550 1 chr2D.!!$F2 1720
5 TraesCS2B01G503100 chr2D 579740527 579741923 1396 False 1633.00 1633 87.7020 1048 2468 1 chr2D.!!$F3 1420
6 TraesCS2B01G503100 chr2D 84742968 84744417 1449 False 682.00 682 75.9780 1037 2460 1 chr2D.!!$F1 1423
7 TraesCS2B01G503100 chr2A 717200116 717201782 1666 False 2512.00 2512 93.9410 830 2489 1 chr2A.!!$F2 1659
8 TraesCS2B01G503100 chr2A 717252989 717254374 1385 False 1692.00 1692 88.5840 1048 2466 1 chr2A.!!$F3 1418
9 TraesCS2B01G503100 chr2A 85291740 85293160 1420 False 662.00 662 75.9780 1037 2431 1 chr2A.!!$F1 1394
10 TraesCS2B01G503100 chr4A 492382773 492383620 847 True 1445.00 1445 97.4060 2609 3456 1 chr4A.!!$R1 847
11 TraesCS2B01G503100 chr6D 38572631 38573630 999 True 227.50 257 90.8860 3 775 2 chr6D.!!$R1 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 827 0.168788 CATGGCGTTCACATGTCCAC 59.831 55.0 5.41 0.02 40.54 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2589 3289 0.386476 CGGCACCCGCTAGTATGTTA 59.614 55.0 0.0 0.0 41.17 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.778415 CCTCGTCGAGCACCACCG 62.778 72.222 17.02 0.00 0.00 4.94
54 55 4.039357 CTCGTCGAGCACCACCGT 62.039 66.667 9.74 0.00 0.00 4.83
55 56 4.337060 TCGTCGAGCACCACCGTG 62.337 66.667 0.00 0.00 43.35 4.94
574 575 2.840102 CGGCGGGAGGAAGGAGAT 60.840 66.667 0.00 0.00 0.00 2.75
575 576 2.825264 GGCGGGAGGAAGGAGATG 59.175 66.667 0.00 0.00 0.00 2.90
576 577 2.110006 GCGGGAGGAAGGAGATGC 59.890 66.667 0.00 0.00 0.00 3.91
577 578 2.419198 CGGGAGGAAGGAGATGCG 59.581 66.667 0.00 0.00 0.00 4.73
578 579 2.127869 CGGGAGGAAGGAGATGCGA 61.128 63.158 0.00 0.00 0.00 5.10
579 580 1.745264 GGGAGGAAGGAGATGCGAG 59.255 63.158 0.00 0.00 0.00 5.03
580 581 1.745264 GGAGGAAGGAGATGCGAGG 59.255 63.158 0.00 0.00 0.00 4.63
581 582 0.757188 GGAGGAAGGAGATGCGAGGA 60.757 60.000 0.00 0.00 0.00 3.71
582 583 0.673437 GAGGAAGGAGATGCGAGGAG 59.327 60.000 0.00 0.00 0.00 3.69
583 584 0.260230 AGGAAGGAGATGCGAGGAGA 59.740 55.000 0.00 0.00 0.00 3.71
584 585 0.673437 GGAAGGAGATGCGAGGAGAG 59.327 60.000 0.00 0.00 0.00 3.20
585 586 1.686355 GAAGGAGATGCGAGGAGAGA 58.314 55.000 0.00 0.00 0.00 3.10
586 587 1.608590 GAAGGAGATGCGAGGAGAGAG 59.391 57.143 0.00 0.00 0.00 3.20
587 588 0.823356 AGGAGATGCGAGGAGAGAGC 60.823 60.000 0.00 0.00 0.00 4.09
588 589 1.659794 GAGATGCGAGGAGAGAGCC 59.340 63.158 0.00 0.00 0.00 4.70
589 590 0.823356 GAGATGCGAGGAGAGAGCCT 60.823 60.000 0.00 0.00 42.17 4.58
590 591 1.108727 AGATGCGAGGAGAGAGCCTG 61.109 60.000 0.00 0.00 38.73 4.85
591 592 2.086251 GATGCGAGGAGAGAGCCTGG 62.086 65.000 0.00 0.00 38.73 4.45
592 593 2.441164 GCGAGGAGAGAGCCTGGA 60.441 66.667 0.00 0.00 38.73 3.86
593 594 2.489275 GCGAGGAGAGAGCCTGGAG 61.489 68.421 0.00 0.00 38.73 3.86
594 595 1.827789 CGAGGAGAGAGCCTGGAGG 60.828 68.421 0.00 0.00 38.73 4.30
595 596 1.457455 GAGGAGAGAGCCTGGAGGG 60.457 68.421 0.00 0.00 38.73 4.30
596 597 2.445654 GGAGAGAGCCTGGAGGGG 60.446 72.222 0.00 0.00 35.18 4.79
597 598 2.693017 GAGAGAGCCTGGAGGGGA 59.307 66.667 0.00 0.00 35.18 4.81
598 599 1.457455 GAGAGAGCCTGGAGGGGAG 60.457 68.421 0.00 0.00 35.18 4.30
599 600 3.160748 GAGAGCCTGGAGGGGAGC 61.161 72.222 0.00 0.00 35.18 4.70
600 601 3.991924 GAGAGCCTGGAGGGGAGCA 62.992 68.421 0.00 0.00 35.18 4.26
601 602 3.478274 GAGCCTGGAGGGGAGCAG 61.478 72.222 0.00 0.00 35.18 4.24
602 603 4.345286 AGCCTGGAGGGGAGCAGT 62.345 66.667 0.00 0.00 35.18 4.40
603 604 4.106925 GCCTGGAGGGGAGCAGTG 62.107 72.222 0.00 0.00 35.18 3.66
604 605 3.406200 CCTGGAGGGGAGCAGTGG 61.406 72.222 0.00 0.00 0.00 4.00
605 606 2.284921 CTGGAGGGGAGCAGTGGA 60.285 66.667 0.00 0.00 0.00 4.02
606 607 1.920325 CTGGAGGGGAGCAGTGGAA 60.920 63.158 0.00 0.00 0.00 3.53
607 608 1.908340 CTGGAGGGGAGCAGTGGAAG 61.908 65.000 0.00 0.00 0.00 3.46
608 609 2.674220 GGAGGGGAGCAGTGGAAGG 61.674 68.421 0.00 0.00 0.00 3.46
609 610 3.334054 AGGGGAGCAGTGGAAGGC 61.334 66.667 0.00 0.00 0.00 4.35
610 611 4.432741 GGGGAGCAGTGGAAGGCC 62.433 72.222 0.00 0.00 0.00 5.19
611 612 4.432741 GGGAGCAGTGGAAGGCCC 62.433 72.222 0.00 0.00 0.00 5.80
612 613 4.432741 GGAGCAGTGGAAGGCCCC 62.433 72.222 0.00 0.00 0.00 5.80
613 614 4.432741 GAGCAGTGGAAGGCCCCC 62.433 72.222 0.00 0.90 0.00 5.40
660 661 2.767073 GGGGGTACGGAGAAGGGG 60.767 72.222 0.00 0.00 0.00 4.79
661 662 2.767073 GGGGTACGGAGAAGGGGG 60.767 72.222 0.00 0.00 0.00 5.40
696 697 4.825679 GGGAGGGGTGGGGGAGAG 62.826 77.778 0.00 0.00 0.00 3.20
697 698 4.825679 GGAGGGGTGGGGGAGAGG 62.826 77.778 0.00 0.00 0.00 3.69
698 699 4.825679 GAGGGGTGGGGGAGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
700 701 4.825679 GGGGTGGGGGAGAGGGAG 62.826 77.778 0.00 0.00 0.00 4.30
701 702 3.695825 GGGTGGGGGAGAGGGAGA 61.696 72.222 0.00 0.00 0.00 3.71
702 703 2.041405 GGTGGGGGAGAGGGAGAG 60.041 72.222 0.00 0.00 0.00 3.20
703 704 2.637640 GGTGGGGGAGAGGGAGAGA 61.638 68.421 0.00 0.00 0.00 3.10
704 705 1.382009 GTGGGGGAGAGGGAGAGAC 60.382 68.421 0.00 0.00 0.00 3.36
705 706 2.123640 GGGGGAGAGGGAGAGACG 60.124 72.222 0.00 0.00 0.00 4.18
706 707 2.835895 GGGGAGAGGGAGAGACGC 60.836 72.222 0.00 0.00 0.00 5.19
707 708 3.213402 GGGAGAGGGAGAGACGCG 61.213 72.222 3.53 3.53 36.53 6.01
708 709 3.894947 GGAGAGGGAGAGACGCGC 61.895 72.222 5.73 0.00 36.53 6.86
709 710 4.244802 GAGAGGGAGAGACGCGCG 62.245 72.222 30.96 30.96 36.49 6.86
759 760 4.530857 CGGCGCAGGAACCCTAGG 62.531 72.222 10.83 0.06 29.64 3.02
760 761 4.858680 GGCGCAGGAACCCTAGGC 62.859 72.222 10.83 0.00 32.49 3.93
762 763 4.530857 CGCAGGAACCCTAGGCGG 62.531 72.222 2.05 0.00 40.70 6.13
763 764 3.081409 GCAGGAACCCTAGGCGGA 61.081 66.667 2.05 0.00 33.16 5.54
764 765 3.095347 GCAGGAACCCTAGGCGGAG 62.095 68.421 2.05 0.00 33.16 4.63
765 766 2.041819 AGGAACCCTAGGCGGAGG 60.042 66.667 2.05 1.77 36.23 4.30
766 767 2.042230 GGAACCCTAGGCGGAGGA 60.042 66.667 2.05 0.00 39.15 3.71
767 768 2.134933 GGAACCCTAGGCGGAGGAG 61.135 68.421 2.05 3.47 39.15 3.69
768 769 2.041819 AACCCTAGGCGGAGGAGG 60.042 66.667 2.05 0.00 39.15 4.30
771 772 2.203567 CCTAGGCGGAGGAGGGAG 60.204 72.222 0.00 0.00 39.15 4.30
772 773 2.915137 CTAGGCGGAGGAGGGAGC 60.915 72.222 0.00 0.00 0.00 4.70
773 774 3.430497 TAGGCGGAGGAGGGAGCT 61.430 66.667 0.00 0.00 0.00 4.09
774 775 3.438615 TAGGCGGAGGAGGGAGCTC 62.439 68.421 4.71 4.71 0.00 4.09
797 798 4.083862 GGGGAGGCGGAGTCACAC 62.084 72.222 0.00 0.00 0.00 3.82
798 799 2.997897 GGGAGGCGGAGTCACACT 60.998 66.667 0.00 0.00 0.00 3.55
799 800 1.681327 GGGAGGCGGAGTCACACTA 60.681 63.158 0.00 0.00 0.00 2.74
800 801 1.668101 GGGAGGCGGAGTCACACTAG 61.668 65.000 0.00 0.00 0.00 2.57
801 802 0.966370 GGAGGCGGAGTCACACTAGT 60.966 60.000 0.00 0.00 0.00 2.57
802 803 0.452585 GAGGCGGAGTCACACTAGTC 59.547 60.000 0.00 0.00 0.00 2.59
803 804 0.251209 AGGCGGAGTCACACTAGTCA 60.251 55.000 0.00 0.00 0.00 3.41
804 805 0.171455 GGCGGAGTCACACTAGTCAG 59.829 60.000 0.00 0.00 0.00 3.51
805 806 0.456995 GCGGAGTCACACTAGTCAGC 60.457 60.000 0.00 0.00 33.83 4.26
806 807 0.171455 CGGAGTCACACTAGTCAGCC 59.829 60.000 0.00 0.00 0.00 4.85
807 808 0.533032 GGAGTCACACTAGTCAGCCC 59.467 60.000 0.00 0.00 0.00 5.19
808 809 1.257743 GAGTCACACTAGTCAGCCCA 58.742 55.000 0.00 0.00 0.00 5.36
809 810 1.827969 GAGTCACACTAGTCAGCCCAT 59.172 52.381 0.00 0.00 0.00 4.00
810 811 1.552337 AGTCACACTAGTCAGCCCATG 59.448 52.381 0.00 0.00 0.00 3.66
811 812 0.904649 TCACACTAGTCAGCCCATGG 59.095 55.000 4.14 4.14 0.00 3.66
821 822 2.491152 GCCCATGGCGTTCACATG 59.509 61.111 6.09 0.00 44.03 3.21
822 823 2.342650 GCCCATGGCGTTCACATGT 61.343 57.895 6.09 0.00 43.15 3.21
823 824 1.802636 CCCATGGCGTTCACATGTC 59.197 57.895 6.09 0.00 43.15 3.06
824 825 1.656818 CCCATGGCGTTCACATGTCC 61.657 60.000 6.09 0.00 43.15 4.02
825 826 0.959867 CCATGGCGTTCACATGTCCA 60.960 55.000 0.00 5.74 43.15 4.02
826 827 0.168788 CATGGCGTTCACATGTCCAC 59.831 55.000 5.41 0.02 40.54 4.02
827 828 0.960364 ATGGCGTTCACATGTCCACC 60.960 55.000 5.41 0.00 0.00 4.61
828 829 1.302511 GGCGTTCACATGTCCACCT 60.303 57.895 0.00 0.00 0.00 4.00
834 835 3.070018 GTTCACATGTCCACCTCAGAAG 58.930 50.000 0.00 0.00 0.00 2.85
851 852 8.037758 ACCTCAGAAGTTAATGATTCAGTACAG 58.962 37.037 0.00 0.00 0.00 2.74
852 853 7.010923 CCTCAGAAGTTAATGATTCAGTACAGC 59.989 40.741 0.00 0.00 0.00 4.40
900 905 3.061831 GTCTGCAGCGCATATCATATCAC 59.938 47.826 11.47 0.00 38.13 3.06
1098 1115 4.115199 GGCCACCTCATCCCGCTT 62.115 66.667 0.00 0.00 0.00 4.68
1161 1181 1.007271 CACGCTCGTCACCTTCACT 60.007 57.895 0.00 0.00 0.00 3.41
1268 1300 1.476891 CGCCGGCACTAGTATGGATAT 59.523 52.381 28.98 0.00 0.00 1.63
1431 1481 2.034879 CGTCTTCGTGCCCAGCAAT 61.035 57.895 0.00 0.00 41.47 3.56
1576 1626 3.528370 CGCCCTCGTTCCGGAGAT 61.528 66.667 3.34 0.00 36.08 2.75
1768 2448 2.264480 CGGGCACAATCTCCGACA 59.736 61.111 0.00 0.00 45.96 4.35
1926 2613 2.526046 CCACCGGTTCCTCTGGGTT 61.526 63.158 2.97 0.00 46.44 4.11
2040 2733 0.193574 AGAGGACCAAGGACAAGGGA 59.806 55.000 0.00 0.00 0.00 4.20
2523 3223 3.987868 CGTGTTGTGTACTGCTTCTGTAT 59.012 43.478 0.00 0.00 0.00 2.29
2540 3240 4.114073 CTGTATCGGCGGTGTATGTTTTA 58.886 43.478 7.21 0.00 0.00 1.52
2544 3244 4.343811 TCGGCGGTGTATGTTTTAATTG 57.656 40.909 7.21 0.00 0.00 2.32
2547 3247 4.918583 CGGCGGTGTATGTTTTAATTGTTT 59.081 37.500 0.00 0.00 0.00 2.83
2550 3250 7.285069 GGCGGTGTATGTTTTAATTGTTTTTC 58.715 34.615 0.00 0.00 0.00 2.29
2551 3251 7.285069 GCGGTGTATGTTTTAATTGTTTTTCC 58.715 34.615 0.00 0.00 0.00 3.13
2552 3252 7.042658 GCGGTGTATGTTTTAATTGTTTTTCCA 60.043 33.333 0.00 0.00 0.00 3.53
2553 3253 8.818057 CGGTGTATGTTTTAATTGTTTTTCCAA 58.182 29.630 0.00 0.00 0.00 3.53
2559 3259 8.848474 TGTTTTAATTGTTTTTCCAAAGGACA 57.152 26.923 0.00 0.00 0.00 4.02
2560 3260 8.940952 TGTTTTAATTGTTTTTCCAAAGGACAG 58.059 29.630 0.00 0.00 0.00 3.51
2561 3261 8.941977 GTTTTAATTGTTTTTCCAAAGGACAGT 58.058 29.630 0.00 0.00 0.00 3.55
2562 3262 8.485976 TTTAATTGTTTTTCCAAAGGACAGTG 57.514 30.769 0.00 0.00 0.00 3.66
2563 3263 3.518634 TGTTTTTCCAAAGGACAGTGC 57.481 42.857 0.00 0.00 0.00 4.40
2564 3264 3.096092 TGTTTTTCCAAAGGACAGTGCT 58.904 40.909 0.00 0.00 0.00 4.40
2565 3265 4.274147 TGTTTTTCCAAAGGACAGTGCTA 58.726 39.130 0.00 0.00 0.00 3.49
2566 3266 4.707448 TGTTTTTCCAAAGGACAGTGCTAA 59.293 37.500 0.00 0.00 0.00 3.09
2567 3267 5.186021 TGTTTTTCCAAAGGACAGTGCTAAA 59.814 36.000 0.00 0.00 0.00 1.85
2568 3268 5.923733 TTTTCCAAAGGACAGTGCTAAAA 57.076 34.783 0.00 0.00 0.00 1.52
2569 3269 6.478512 TTTTCCAAAGGACAGTGCTAAAAT 57.521 33.333 0.00 0.00 0.00 1.82
2570 3270 5.705609 TTCCAAAGGACAGTGCTAAAATC 57.294 39.130 0.00 0.00 0.00 2.17
2571 3271 4.079253 TCCAAAGGACAGTGCTAAAATCC 58.921 43.478 0.00 0.00 0.00 3.01
2572 3272 3.119849 CCAAAGGACAGTGCTAAAATCCG 60.120 47.826 0.00 0.00 34.46 4.18
2573 3273 2.403252 AGGACAGTGCTAAAATCCGG 57.597 50.000 0.00 0.00 34.46 5.14
2574 3274 1.906574 AGGACAGTGCTAAAATCCGGA 59.093 47.619 6.61 6.61 34.46 5.14
2575 3275 2.007608 GGACAGTGCTAAAATCCGGAC 58.992 52.381 6.12 0.00 0.00 4.79
2576 3276 1.659098 GACAGTGCTAAAATCCGGACG 59.341 52.381 6.12 0.00 0.00 4.79
2577 3277 1.274167 ACAGTGCTAAAATCCGGACGA 59.726 47.619 6.12 0.00 0.00 4.20
2578 3278 1.659098 CAGTGCTAAAATCCGGACGAC 59.341 52.381 6.12 0.00 0.00 4.34
2579 3279 1.549170 AGTGCTAAAATCCGGACGACT 59.451 47.619 6.12 0.00 0.00 4.18
2580 3280 1.659098 GTGCTAAAATCCGGACGACTG 59.341 52.381 6.12 0.00 0.00 3.51
2581 3281 1.546923 TGCTAAAATCCGGACGACTGA 59.453 47.619 6.12 0.00 0.00 3.41
2582 3282 2.028839 TGCTAAAATCCGGACGACTGAA 60.029 45.455 6.12 0.00 0.00 3.02
2583 3283 2.347755 GCTAAAATCCGGACGACTGAAC 59.652 50.000 6.12 0.00 0.00 3.18
2584 3284 1.804601 AAAATCCGGACGACTGAACC 58.195 50.000 6.12 0.00 0.00 3.62
2585 3285 0.682852 AAATCCGGACGACTGAACCA 59.317 50.000 6.12 0.00 0.00 3.67
2586 3286 0.902531 AATCCGGACGACTGAACCAT 59.097 50.000 6.12 0.00 0.00 3.55
2587 3287 1.771565 ATCCGGACGACTGAACCATA 58.228 50.000 6.12 0.00 0.00 2.74
2588 3288 1.100510 TCCGGACGACTGAACCATAG 58.899 55.000 0.00 0.00 0.00 2.23
2589 3289 0.815734 CCGGACGACTGAACCATAGT 59.184 55.000 0.00 0.00 0.00 2.12
2590 3290 2.019249 CCGGACGACTGAACCATAGTA 58.981 52.381 0.00 0.00 0.00 1.82
2591 3291 2.424601 CCGGACGACTGAACCATAGTAA 59.575 50.000 0.00 0.00 0.00 2.24
2592 3292 3.432782 CGGACGACTGAACCATAGTAAC 58.567 50.000 0.00 0.00 0.00 2.50
2593 3293 3.119743 CGGACGACTGAACCATAGTAACA 60.120 47.826 0.00 0.00 0.00 2.41
2594 3294 4.439700 CGGACGACTGAACCATAGTAACAT 60.440 45.833 0.00 0.00 0.00 2.71
2595 3295 5.220912 CGGACGACTGAACCATAGTAACATA 60.221 44.000 0.00 0.00 0.00 2.29
2596 3296 5.975939 GGACGACTGAACCATAGTAACATAC 59.024 44.000 0.00 0.00 0.00 2.39
2597 3297 6.183360 GGACGACTGAACCATAGTAACATACT 60.183 42.308 0.00 0.00 42.68 2.12
2598 3298 7.012704 GGACGACTGAACCATAGTAACATACTA 59.987 40.741 0.00 0.12 44.64 1.82
2599 3299 7.928103 ACGACTGAACCATAGTAACATACTAG 58.072 38.462 0.00 0.00 43.85 2.57
2600 3300 6.856938 CGACTGAACCATAGTAACATACTAGC 59.143 42.308 3.87 0.00 43.85 3.42
2601 3301 6.736123 ACTGAACCATAGTAACATACTAGCG 58.264 40.000 3.87 0.00 43.85 4.26
2602 3302 6.080648 TGAACCATAGTAACATACTAGCGG 57.919 41.667 11.45 11.45 43.85 5.52
2603 3303 5.010314 TGAACCATAGTAACATACTAGCGGG 59.990 44.000 15.06 12.27 43.85 6.13
2604 3304 4.477249 ACCATAGTAACATACTAGCGGGT 58.523 43.478 15.06 12.69 43.85 5.28
2605 3305 4.280174 ACCATAGTAACATACTAGCGGGTG 59.720 45.833 15.06 5.16 43.85 4.61
2606 3306 2.884894 AGTAACATACTAGCGGGTGC 57.115 50.000 0.00 0.00 37.23 5.01
2607 3307 1.411612 AGTAACATACTAGCGGGTGCC 59.588 52.381 0.00 0.00 44.31 5.01
2794 3494 0.110056 CGCTTGTTGACACATCAGCC 60.110 55.000 1.25 0.00 34.45 4.85
2829 3529 1.343506 GACCTACAACTAACCACGCG 58.656 55.000 3.53 3.53 0.00 6.01
3070 6752 2.279584 TCAAAGCGACAACGGCGA 60.280 55.556 16.62 0.00 40.15 5.54
3201 6885 1.472201 GGAGGTCCCCGTCGAAAATAC 60.472 57.143 0.00 0.00 0.00 1.89
3210 6894 1.734707 CGTCGAAAATACCAGAGCCGT 60.735 52.381 0.00 0.00 0.00 5.68
3272 6956 0.685097 GTCCTTGTACTGGTGAGGCA 59.315 55.000 0.00 0.00 0.00 4.75
3284 6968 0.804989 GTGAGGCAAAGAATCGGTGG 59.195 55.000 0.00 0.00 0.00 4.61
3288 6972 1.322538 GGCAAAGAATCGGTGGCCAT 61.323 55.000 9.72 0.00 41.02 4.40
3336 7020 3.233231 GGTGCAGGGCAAGCCAAA 61.233 61.111 13.87 0.00 41.47 3.28
3450 7142 2.373169 GGATCAGCCACCATATCCTCAA 59.627 50.000 0.00 0.00 35.91 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.778415 CGGTGGTGCTCGACGAGG 62.778 72.222 25.31 8.30 0.00 4.63
37 38 4.039357 ACGGTGGTGCTCGACGAG 62.039 66.667 20.56 20.56 0.00 4.18
38 39 4.337060 CACGGTGGTGCTCGACGA 62.337 66.667 0.00 0.00 37.35 4.20
557 558 2.840102 ATCTCCTTCCTCCCGCCG 60.840 66.667 0.00 0.00 0.00 6.46
558 559 2.825264 CATCTCCTTCCTCCCGCC 59.175 66.667 0.00 0.00 0.00 6.13
559 560 2.110006 GCATCTCCTTCCTCCCGC 59.890 66.667 0.00 0.00 0.00 6.13
560 561 2.081425 CTCGCATCTCCTTCCTCCCG 62.081 65.000 0.00 0.00 0.00 5.14
561 562 1.745264 CTCGCATCTCCTTCCTCCC 59.255 63.158 0.00 0.00 0.00 4.30
562 563 0.757188 TCCTCGCATCTCCTTCCTCC 60.757 60.000 0.00 0.00 0.00 4.30
563 564 0.673437 CTCCTCGCATCTCCTTCCTC 59.327 60.000 0.00 0.00 0.00 3.71
564 565 0.260230 TCTCCTCGCATCTCCTTCCT 59.740 55.000 0.00 0.00 0.00 3.36
565 566 0.673437 CTCTCCTCGCATCTCCTTCC 59.327 60.000 0.00 0.00 0.00 3.46
566 567 1.608590 CTCTCTCCTCGCATCTCCTTC 59.391 57.143 0.00 0.00 0.00 3.46
567 568 1.691196 CTCTCTCCTCGCATCTCCTT 58.309 55.000 0.00 0.00 0.00 3.36
568 569 0.823356 GCTCTCTCCTCGCATCTCCT 60.823 60.000 0.00 0.00 0.00 3.69
569 570 1.659794 GCTCTCTCCTCGCATCTCC 59.340 63.158 0.00 0.00 0.00 3.71
570 571 0.823356 AGGCTCTCTCCTCGCATCTC 60.823 60.000 0.00 0.00 0.00 2.75
571 572 1.108727 CAGGCTCTCTCCTCGCATCT 61.109 60.000 0.00 0.00 33.25 2.90
572 573 1.363443 CAGGCTCTCTCCTCGCATC 59.637 63.158 0.00 0.00 33.25 3.91
573 574 2.132996 CCAGGCTCTCTCCTCGCAT 61.133 63.158 0.00 0.00 33.25 4.73
574 575 2.757508 CCAGGCTCTCTCCTCGCA 60.758 66.667 0.00 0.00 33.25 5.10
575 576 2.441164 TCCAGGCTCTCTCCTCGC 60.441 66.667 0.00 0.00 33.25 5.03
576 577 1.827789 CCTCCAGGCTCTCTCCTCG 60.828 68.421 0.00 0.00 33.25 4.63
577 578 1.457455 CCCTCCAGGCTCTCTCCTC 60.457 68.421 0.00 0.00 33.25 3.71
578 579 2.695597 CCCTCCAGGCTCTCTCCT 59.304 66.667 0.00 0.00 36.78 3.69
579 580 2.445654 CCCCTCCAGGCTCTCTCC 60.446 72.222 0.00 0.00 0.00 3.71
580 581 1.457455 CTCCCCTCCAGGCTCTCTC 60.457 68.421 0.00 0.00 0.00 3.20
581 582 2.695597 CTCCCCTCCAGGCTCTCT 59.304 66.667 0.00 0.00 0.00 3.10
582 583 3.160748 GCTCCCCTCCAGGCTCTC 61.161 72.222 0.00 0.00 0.00 3.20
583 584 3.999705 CTGCTCCCCTCCAGGCTCT 63.000 68.421 0.00 0.00 0.00 4.09
584 585 3.478274 CTGCTCCCCTCCAGGCTC 61.478 72.222 0.00 0.00 0.00 4.70
585 586 4.345286 ACTGCTCCCCTCCAGGCT 62.345 66.667 0.00 0.00 33.43 4.58
586 587 4.106925 CACTGCTCCCCTCCAGGC 62.107 72.222 0.00 0.00 33.43 4.85
587 588 3.406200 CCACTGCTCCCCTCCAGG 61.406 72.222 0.00 0.00 33.43 4.45
588 589 1.908340 CTTCCACTGCTCCCCTCCAG 61.908 65.000 0.00 0.00 35.26 3.86
589 590 1.920325 CTTCCACTGCTCCCCTCCA 60.920 63.158 0.00 0.00 0.00 3.86
590 591 2.674220 CCTTCCACTGCTCCCCTCC 61.674 68.421 0.00 0.00 0.00 4.30
591 592 2.993853 CCTTCCACTGCTCCCCTC 59.006 66.667 0.00 0.00 0.00 4.30
592 593 3.334054 GCCTTCCACTGCTCCCCT 61.334 66.667 0.00 0.00 0.00 4.79
593 594 4.432741 GGCCTTCCACTGCTCCCC 62.433 72.222 0.00 0.00 0.00 4.81
594 595 4.432741 GGGCCTTCCACTGCTCCC 62.433 72.222 0.84 0.00 35.00 4.30
595 596 4.432741 GGGGCCTTCCACTGCTCC 62.433 72.222 0.84 0.00 41.79 4.70
596 597 4.432741 GGGGGCCTTCCACTGCTC 62.433 72.222 0.84 0.00 35.56 4.26
643 644 2.767073 CCCCTTCTCCGTACCCCC 60.767 72.222 0.00 0.00 0.00 5.40
644 645 2.767073 CCCCCTTCTCCGTACCCC 60.767 72.222 0.00 0.00 0.00 4.95
679 680 4.825679 CTCTCCCCCACCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
680 681 4.825679 CCTCTCCCCCACCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
681 682 4.825679 CCCTCTCCCCCACCCCTC 62.826 77.778 0.00 0.00 0.00 4.30
683 684 4.825679 CTCCCTCTCCCCCACCCC 62.826 77.778 0.00 0.00 0.00 4.95
684 685 3.695825 TCTCCCTCTCCCCCACCC 61.696 72.222 0.00 0.00 0.00 4.61
685 686 2.041405 CTCTCCCTCTCCCCCACC 60.041 72.222 0.00 0.00 0.00 4.61
686 687 1.382009 GTCTCTCCCTCTCCCCCAC 60.382 68.421 0.00 0.00 0.00 4.61
687 688 2.997584 CGTCTCTCCCTCTCCCCCA 61.998 68.421 0.00 0.00 0.00 4.96
688 689 2.123640 CGTCTCTCCCTCTCCCCC 60.124 72.222 0.00 0.00 0.00 5.40
689 690 2.835895 GCGTCTCTCCCTCTCCCC 60.836 72.222 0.00 0.00 0.00 4.81
690 691 3.213402 CGCGTCTCTCCCTCTCCC 61.213 72.222 0.00 0.00 0.00 4.30
691 692 3.894947 GCGCGTCTCTCCCTCTCC 61.895 72.222 8.43 0.00 0.00 3.71
692 693 4.244802 CGCGCGTCTCTCCCTCTC 62.245 72.222 24.19 0.00 0.00 3.20
742 743 4.530857 CCTAGGGTTCCTGCGCCG 62.531 72.222 4.18 0.00 34.61 6.46
743 744 4.858680 GCCTAGGGTTCCTGCGCC 62.859 72.222 11.72 0.00 34.61 6.53
745 746 4.530857 CCGCCTAGGGTTCCTGCG 62.531 72.222 11.72 5.59 42.92 5.18
746 747 3.081409 TCCGCCTAGGGTTCCTGC 61.081 66.667 11.72 0.00 41.52 4.85
747 748 2.435693 CCTCCGCCTAGGGTTCCTG 61.436 68.421 11.72 0.00 41.52 3.86
748 749 2.041819 CCTCCGCCTAGGGTTCCT 60.042 66.667 11.72 0.00 41.52 3.36
749 750 2.042230 TCCTCCGCCTAGGGTTCC 60.042 66.667 11.72 0.00 41.52 3.62
750 751 2.134933 CCTCCTCCGCCTAGGGTTC 61.135 68.421 11.72 0.00 41.52 3.62
751 752 2.041819 CCTCCTCCGCCTAGGGTT 60.042 66.667 11.72 0.00 41.52 4.11
752 753 4.159108 CCCTCCTCCGCCTAGGGT 62.159 72.222 11.72 0.00 44.34 4.34
754 755 2.203567 CTCCCTCCTCCGCCTAGG 60.204 72.222 3.67 3.67 42.97 3.02
755 756 2.915137 GCTCCCTCCTCCGCCTAG 60.915 72.222 0.00 0.00 0.00 3.02
756 757 3.430497 AGCTCCCTCCTCCGCCTA 61.430 66.667 0.00 0.00 0.00 3.93
757 758 4.851214 GAGCTCCCTCCTCCGCCT 62.851 72.222 0.87 0.00 31.68 5.52
780 781 4.083862 GTGTGACTCCGCCTCCCC 62.084 72.222 0.00 0.00 0.00 4.81
781 782 1.668101 CTAGTGTGACTCCGCCTCCC 61.668 65.000 0.00 0.00 0.00 4.30
782 783 0.966370 ACTAGTGTGACTCCGCCTCC 60.966 60.000 0.00 0.00 0.00 4.30
783 784 0.452585 GACTAGTGTGACTCCGCCTC 59.547 60.000 0.00 0.00 0.00 4.70
784 785 0.251209 TGACTAGTGTGACTCCGCCT 60.251 55.000 0.00 0.00 0.00 5.52
785 786 0.171455 CTGACTAGTGTGACTCCGCC 59.829 60.000 0.00 0.00 0.00 6.13
786 787 0.456995 GCTGACTAGTGTGACTCCGC 60.457 60.000 0.00 0.00 0.00 5.54
787 788 0.171455 GGCTGACTAGTGTGACTCCG 59.829 60.000 0.00 0.00 0.00 4.63
788 789 0.533032 GGGCTGACTAGTGTGACTCC 59.467 60.000 0.00 0.00 0.00 3.85
789 790 1.257743 TGGGCTGACTAGTGTGACTC 58.742 55.000 0.00 0.00 0.00 3.36
790 791 1.552337 CATGGGCTGACTAGTGTGACT 59.448 52.381 0.00 0.00 0.00 3.41
791 792 1.406069 CCATGGGCTGACTAGTGTGAC 60.406 57.143 2.85 0.00 0.00 3.67
792 793 0.904649 CCATGGGCTGACTAGTGTGA 59.095 55.000 2.85 0.00 0.00 3.58
793 794 0.745845 GCCATGGGCTGACTAGTGTG 60.746 60.000 15.13 0.00 46.69 3.82
794 795 1.604378 GCCATGGGCTGACTAGTGT 59.396 57.895 15.13 0.00 46.69 3.55
795 796 4.547859 GCCATGGGCTGACTAGTG 57.452 61.111 15.13 0.00 46.69 2.74
804 805 2.270297 GACATGTGAACGCCATGGGC 62.270 60.000 15.13 4.92 46.75 5.36
805 806 1.656818 GGACATGTGAACGCCATGGG 61.657 60.000 15.13 6.26 43.15 4.00
806 807 0.959867 TGGACATGTGAACGCCATGG 60.960 55.000 7.63 7.63 43.15 3.66
807 808 0.168788 GTGGACATGTGAACGCCATG 59.831 55.000 1.15 0.00 44.17 3.66
808 809 0.960364 GGTGGACATGTGAACGCCAT 60.960 55.000 1.15 0.00 33.80 4.40
809 810 1.599518 GGTGGACATGTGAACGCCA 60.600 57.895 1.15 0.00 33.80 5.69
810 811 1.298859 GAGGTGGACATGTGAACGCC 61.299 60.000 1.15 9.65 0.00 5.68
811 812 0.602638 TGAGGTGGACATGTGAACGC 60.603 55.000 1.15 0.00 0.00 4.84
812 813 1.000843 TCTGAGGTGGACATGTGAACG 59.999 52.381 1.15 0.00 0.00 3.95
813 814 2.839486 TCTGAGGTGGACATGTGAAC 57.161 50.000 1.15 0.29 0.00 3.18
814 815 2.705658 ACTTCTGAGGTGGACATGTGAA 59.294 45.455 1.15 0.00 0.00 3.18
815 816 2.329267 ACTTCTGAGGTGGACATGTGA 58.671 47.619 1.15 0.00 0.00 3.58
816 817 2.847327 ACTTCTGAGGTGGACATGTG 57.153 50.000 1.15 0.00 0.00 3.21
817 818 4.974645 TTAACTTCTGAGGTGGACATGT 57.025 40.909 0.00 0.00 0.00 3.21
818 819 5.491070 TCATTAACTTCTGAGGTGGACATG 58.509 41.667 0.00 0.00 0.00 3.21
819 820 5.762179 TCATTAACTTCTGAGGTGGACAT 57.238 39.130 0.00 0.00 0.00 3.06
820 821 5.762179 ATCATTAACTTCTGAGGTGGACA 57.238 39.130 0.00 0.00 0.00 4.02
821 822 6.173339 TGAATCATTAACTTCTGAGGTGGAC 58.827 40.000 0.00 0.00 0.00 4.02
822 823 6.013379 ACTGAATCATTAACTTCTGAGGTGGA 60.013 38.462 0.00 0.00 0.00 4.02
823 824 6.176183 ACTGAATCATTAACTTCTGAGGTGG 58.824 40.000 0.00 0.00 0.00 4.61
824 825 7.819415 TGTACTGAATCATTAACTTCTGAGGTG 59.181 37.037 0.00 0.00 0.00 4.00
825 826 7.907389 TGTACTGAATCATTAACTTCTGAGGT 58.093 34.615 0.00 0.00 0.00 3.85
826 827 7.010923 GCTGTACTGAATCATTAACTTCTGAGG 59.989 40.741 3.61 0.00 0.00 3.86
827 828 7.547019 TGCTGTACTGAATCATTAACTTCTGAG 59.453 37.037 3.61 0.00 0.00 3.35
828 829 7.386059 TGCTGTACTGAATCATTAACTTCTGA 58.614 34.615 3.61 0.00 0.00 3.27
834 835 5.648092 AGGGTTGCTGTACTGAATCATTAAC 59.352 40.000 3.61 0.00 0.00 2.01
851 852 4.022849 GCCATTACTCATGAATAGGGTTGC 60.023 45.833 0.00 0.00 34.31 4.17
852 853 5.132502 TGCCATTACTCATGAATAGGGTTG 58.867 41.667 0.00 0.00 34.31 3.77
900 905 3.963428 AGCAGTACCTACCAAACTCAG 57.037 47.619 0.00 0.00 0.00 3.35
983 1000 2.943978 ATCGATCGGCCCGATTCCC 61.944 63.158 21.39 6.66 47.00 3.97
1161 1181 2.944954 TCCGGGGAGGAGAGGTCA 60.945 66.667 0.00 0.00 45.98 4.02
1590 1643 4.409218 TCCACGAGGTGCGCGTAC 62.409 66.667 19.68 19.68 46.04 3.67
1638 1691 4.341806 TCGTAGAAGGTGTTCACCAGTAAA 59.658 41.667 21.71 3.08 34.82 2.01
1926 2613 1.314534 CCAGATTTGGCATCCGCACA 61.315 55.000 0.00 0.00 41.24 4.57
2097 2790 2.237751 GCAGTGCGACACGAACACT 61.238 57.895 0.00 2.46 45.25 3.55
2498 3198 1.495584 AAGCAGTACACAACACGCCG 61.496 55.000 0.00 0.00 31.02 6.46
2523 3223 3.752222 ACAATTAAAACATACACCGCCGA 59.248 39.130 0.00 0.00 0.00 5.54
2540 3240 4.875536 GCACTGTCCTTTGGAAAAACAATT 59.124 37.500 0.00 0.00 31.38 2.32
2544 3244 3.801114 AGCACTGTCCTTTGGAAAAAC 57.199 42.857 0.00 0.00 31.38 2.43
2547 3247 5.010617 GGATTTTAGCACTGTCCTTTGGAAA 59.989 40.000 0.00 0.00 31.38 3.13
2550 3250 3.119849 CGGATTTTAGCACTGTCCTTTGG 60.120 47.826 0.00 0.00 0.00 3.28
2551 3251 3.119849 CCGGATTTTAGCACTGTCCTTTG 60.120 47.826 0.00 0.00 0.00 2.77
2552 3252 3.081804 CCGGATTTTAGCACTGTCCTTT 58.918 45.455 0.00 0.00 0.00 3.11
2553 3253 2.304761 TCCGGATTTTAGCACTGTCCTT 59.695 45.455 0.00 0.00 0.00 3.36
2554 3254 1.906574 TCCGGATTTTAGCACTGTCCT 59.093 47.619 0.00 0.00 0.00 3.85
2555 3255 2.007608 GTCCGGATTTTAGCACTGTCC 58.992 52.381 7.81 0.00 0.00 4.02
2556 3256 1.659098 CGTCCGGATTTTAGCACTGTC 59.341 52.381 7.81 0.00 0.00 3.51
2557 3257 1.274167 TCGTCCGGATTTTAGCACTGT 59.726 47.619 7.81 0.00 0.00 3.55
2558 3258 1.659098 GTCGTCCGGATTTTAGCACTG 59.341 52.381 7.81 0.00 0.00 3.66
2559 3259 1.549170 AGTCGTCCGGATTTTAGCACT 59.451 47.619 7.81 0.00 0.00 4.40
2560 3260 1.659098 CAGTCGTCCGGATTTTAGCAC 59.341 52.381 7.81 0.00 0.00 4.40
2561 3261 1.546923 TCAGTCGTCCGGATTTTAGCA 59.453 47.619 7.81 0.00 0.00 3.49
2562 3262 2.288961 TCAGTCGTCCGGATTTTAGC 57.711 50.000 7.81 0.00 0.00 3.09
2563 3263 2.928116 GGTTCAGTCGTCCGGATTTTAG 59.072 50.000 7.81 0.00 0.00 1.85
2564 3264 2.299582 TGGTTCAGTCGTCCGGATTTTA 59.700 45.455 7.81 0.00 0.00 1.52
2565 3265 1.071071 TGGTTCAGTCGTCCGGATTTT 59.929 47.619 7.81 0.00 0.00 1.82
2566 3266 0.682852 TGGTTCAGTCGTCCGGATTT 59.317 50.000 7.81 0.00 0.00 2.17
2567 3267 0.902531 ATGGTTCAGTCGTCCGGATT 59.097 50.000 7.81 0.00 0.00 3.01
2568 3268 1.681793 CTATGGTTCAGTCGTCCGGAT 59.318 52.381 7.81 0.00 0.00 4.18
2569 3269 1.100510 CTATGGTTCAGTCGTCCGGA 58.899 55.000 0.00 0.00 0.00 5.14
2570 3270 0.815734 ACTATGGTTCAGTCGTCCGG 59.184 55.000 0.00 0.00 0.00 5.14
2571 3271 3.119743 TGTTACTATGGTTCAGTCGTCCG 60.120 47.826 0.00 0.00 0.00 4.79
2572 3272 4.445452 TGTTACTATGGTTCAGTCGTCC 57.555 45.455 0.00 0.00 0.00 4.79
2573 3273 6.793349 AGTATGTTACTATGGTTCAGTCGTC 58.207 40.000 0.00 0.00 37.23 4.20
2574 3274 6.770746 AGTATGTTACTATGGTTCAGTCGT 57.229 37.500 0.00 0.00 37.23 4.34
2575 3275 6.856938 GCTAGTATGTTACTATGGTTCAGTCG 59.143 42.308 0.00 0.00 40.25 4.18
2576 3276 6.856938 CGCTAGTATGTTACTATGGTTCAGTC 59.143 42.308 0.00 0.00 40.25 3.51
2577 3277 6.238953 CCGCTAGTATGTTACTATGGTTCAGT 60.239 42.308 0.00 0.00 40.25 3.41
2578 3278 6.150318 CCGCTAGTATGTTACTATGGTTCAG 58.850 44.000 0.00 0.00 40.25 3.02
2579 3279 5.010314 CCCGCTAGTATGTTACTATGGTTCA 59.990 44.000 0.00 0.00 40.25 3.18
2580 3280 5.010415 ACCCGCTAGTATGTTACTATGGTTC 59.990 44.000 0.00 0.00 40.25 3.62
2581 3281 4.897670 ACCCGCTAGTATGTTACTATGGTT 59.102 41.667 0.00 0.00 40.25 3.67
2582 3282 4.280174 CACCCGCTAGTATGTTACTATGGT 59.720 45.833 0.00 0.00 40.25 3.55
2583 3283 4.806330 CACCCGCTAGTATGTTACTATGG 58.194 47.826 0.00 1.91 40.25 2.74
2584 3284 4.235360 GCACCCGCTAGTATGTTACTATG 58.765 47.826 0.00 0.00 40.25 2.23
2585 3285 3.257624 GGCACCCGCTAGTATGTTACTAT 59.742 47.826 0.00 0.00 40.25 2.12
2586 3286 2.624838 GGCACCCGCTAGTATGTTACTA 59.375 50.000 0.00 0.00 39.31 1.82
2587 3287 1.411612 GGCACCCGCTAGTATGTTACT 59.588 52.381 0.00 0.00 37.56 2.24
2588 3288 1.861971 GGCACCCGCTAGTATGTTAC 58.138 55.000 0.00 0.00 38.60 2.50
2589 3289 0.386476 CGGCACCCGCTAGTATGTTA 59.614 55.000 0.00 0.00 41.17 2.41
2590 3290 1.143183 CGGCACCCGCTAGTATGTT 59.857 57.895 0.00 0.00 41.17 2.71
2591 3291 2.812499 CGGCACCCGCTAGTATGT 59.188 61.111 0.00 0.00 41.17 2.29
2663 3363 6.880822 TTACCATCGATCAAGTCTTAAACG 57.119 37.500 0.00 0.00 0.00 3.60
2794 3494 3.354089 AGGTCGCAAACATTTTCACAG 57.646 42.857 0.00 0.00 0.00 3.66
2829 3529 1.022451 TGCATAGAAAACGGGCGTCC 61.022 55.000 0.00 0.00 0.00 4.79
3070 6752 2.200370 TCACTGGTCCTCCGTGGT 59.800 61.111 6.67 0.00 38.12 4.16
3189 6872 1.287425 GGCTCTGGTATTTTCGACGG 58.713 55.000 0.00 0.00 0.00 4.79
3201 6885 1.151668 CAAGAACAAGACGGCTCTGG 58.848 55.000 0.00 0.00 0.00 3.86
3210 6894 4.443457 CCCTCTGTGAGTTCAAGAACAAGA 60.443 45.833 14.69 10.26 43.47 3.02
3272 6956 0.323725 AGCATGGCCACCGATTCTTT 60.324 50.000 8.16 0.00 0.00 2.52
3336 7020 2.478890 CGACGACCAGGATAGCGGT 61.479 63.158 0.00 0.00 38.56 5.68
3400 7084 0.527565 CCAATAGCAGCCACAACACC 59.472 55.000 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.