Multiple sequence alignment - TraesCS2B01G501000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G501000 chr2B 100.000 2363 0 0 1 2363 696082190 696079828 0.000000e+00 4364.0
1 TraesCS2B01G501000 chr2B 87.948 697 50 17 699 1382 695928795 695928120 0.000000e+00 791.0
2 TraesCS2B01G501000 chr2B 87.948 697 50 17 699 1382 695964798 695964123 0.000000e+00 791.0
3 TraesCS2B01G501000 chr2B 90.940 596 37 9 792 1382 695993187 695992604 0.000000e+00 785.0
4 TraesCS2B01G501000 chr2B 82.416 563 56 18 1438 1995 695992603 695992079 3.580000e-123 451.0
5 TraesCS2B01G501000 chr2B 86.058 416 40 9 1574 1984 696074957 696074555 4.670000e-117 431.0
6 TraesCS2B01G501000 chr2B 85.791 373 35 6 1438 1804 695928119 695927759 1.710000e-101 379.0
7 TraesCS2B01G501000 chr2B 85.791 373 35 6 1438 1804 695964122 695963762 1.710000e-101 379.0
8 TraesCS2B01G501000 chr2B 88.636 176 20 0 1088 1263 695920228 695920053 5.120000e-52 215.0
9 TraesCS2B01G501000 chr2B 90.411 146 14 0 1669 1814 695917732 695917587 2.400000e-45 193.0
10 TraesCS2B01G501000 chr2B 90.411 146 14 0 1669 1814 695954198 695954053 2.400000e-45 193.0
11 TraesCS2B01G501000 chr2B 96.226 53 2 0 289 341 696081849 696081797 1.160000e-13 87.9
12 TraesCS2B01G501000 chr2B 96.226 53 2 0 342 394 696081902 696081850 1.160000e-13 87.9
13 TraesCS2B01G501000 chr2A 90.048 1045 59 14 353 1382 716550318 716549304 0.000000e+00 1312.0
14 TraesCS2B01G501000 chr2A 87.220 759 54 15 637 1382 716545152 716544424 0.000000e+00 824.0
15 TraesCS2B01G501000 chr2A 93.380 287 18 1 8 294 716550625 716550340 7.810000e-115 424.0
16 TraesCS2B01G501000 chr2A 87.500 304 27 7 1462 1760 716522902 716522605 8.090000e-90 340.0
17 TraesCS2B01G501000 chr2A 85.015 327 32 12 1438 1758 716549303 716548988 1.360000e-82 316.0
18 TraesCS2B01G501000 chr2A 84.899 298 26 9 1757 2050 716548919 716548637 1.380000e-72 283.0
19 TraesCS2B01G501000 chr2A 90.000 90 9 0 745 834 716523374 716523285 1.480000e-22 117.0
20 TraesCS2B01G501000 chr2D 88.298 658 57 12 745 1382 579060846 579060189 0.000000e+00 771.0
21 TraesCS2B01G501000 chr2D 91.042 547 29 11 353 880 579066174 579065629 0.000000e+00 721.0
22 TraesCS2B01G501000 chr2D 89.648 512 36 6 871 1382 579065412 579064918 9.210000e-179 636.0
23 TraesCS2B01G501000 chr2D 85.639 571 52 15 1438 1995 579064917 579064364 7.330000e-160 573.0
24 TraesCS2B01G501000 chr2D 88.814 295 32 1 1088 1382 579001115 579000822 6.210000e-96 361.0
25 TraesCS2B01G501000 chr2D 84.049 326 33 12 1438 1758 579060188 579059877 1.780000e-76 296.0
26 TraesCS2B01G501000 chr2D 92.262 168 10 2 2 169 579069154 579068990 3.930000e-58 235.0
27 TraesCS2B01G501000 chr2D 96.899 129 4 0 166 294 579066324 579066196 1.420000e-52 217.0
28 TraesCS2B01G501000 chr3B 95.584 317 13 1 2048 2363 9906254 9906570 7.540000e-140 507.0
29 TraesCS2B01G501000 chr5D 95.570 316 12 2 2048 2363 479573386 479573699 2.710000e-139 505.0
30 TraesCS2B01G501000 chr7D 95.541 314 13 1 2050 2363 385711727 385711415 3.510000e-138 501.0
31 TraesCS2B01G501000 chr7D 94.268 314 17 1 2050 2363 494614987 494614675 1.640000e-131 479.0
32 TraesCS2B01G501000 chr7B 94.953 317 15 1 2048 2363 592590979 592591295 1.630000e-136 496.0
33 TraesCS2B01G501000 chr4B 94.620 316 16 1 2048 2363 97123730 97124044 2.730000e-134 488.0
34 TraesCS2B01G501000 chr4B 93.949 314 19 0 2050 2363 481630271 481630584 2.130000e-130 475.0
35 TraesCS2B01G501000 chr6D 94.304 316 16 2 2048 2363 452397305 452396992 1.270000e-132 483.0
36 TraesCS2B01G501000 chr1D 94.006 317 18 1 2047 2363 429594955 429595270 1.640000e-131 479.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G501000 chr2B 696079828 696082190 2362 True 1513.266667 4364 97.4840 1 2363 3 chr2B.!!$R7 2362
1 TraesCS2B01G501000 chr2B 695992079 695993187 1108 True 618.000000 785 86.6780 792 1995 2 chr2B.!!$R6 1203
2 TraesCS2B01G501000 chr2B 695927759 695928795 1036 True 585.000000 791 86.8695 699 1804 2 chr2B.!!$R4 1105
3 TraesCS2B01G501000 chr2B 695963762 695964798 1036 True 585.000000 791 86.8695 699 1804 2 chr2B.!!$R5 1105
4 TraesCS2B01G501000 chr2B 695917587 695920228 2641 True 204.000000 215 89.5235 1088 1814 2 chr2B.!!$R3 726
5 TraesCS2B01G501000 chr2A 716544424 716550625 6201 True 631.800000 1312 88.1124 8 2050 5 chr2A.!!$R2 2042
6 TraesCS2B01G501000 chr2A 716522605 716523374 769 True 228.500000 340 88.7500 745 1760 2 chr2A.!!$R1 1015
7 TraesCS2B01G501000 chr2D 579059877 579069154 9277 True 492.714286 771 89.6910 2 1995 7 chr2D.!!$R2 1993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 3850 0.03601 CAGCTCCACGGAGTTCCAAT 60.036 55.0 14.48 0.0 41.61 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 7262 0.032017 ATGCGGGGTCTCCTAGAGTT 60.032 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 9.244799 CATATATCAAAACTAGCGAGTAACACA 57.755 33.333 0.00 0.00 33.58 3.72
140 141 2.642139 CAGGCACAACTTATGCTTGG 57.358 50.000 0.00 0.00 44.14 3.61
141 142 0.890683 AGGCACAACTTATGCTTGGC 59.109 50.000 0.00 0.00 42.93 4.52
197 2867 6.183360 ACGGCAGGAGTATATGCTTGATATAG 60.183 42.308 0.00 0.00 42.19 1.31
228 2898 3.219281 GGTTGGAGTTAAGAAAGCACCA 58.781 45.455 0.00 0.00 0.00 4.17
294 2964 7.455058 ACATATGCCGGTGGAAATTAATACTA 58.545 34.615 1.90 0.00 0.00 1.82
295 2965 7.389607 ACATATGCCGGTGGAAATTAATACTAC 59.610 37.037 1.90 0.00 0.00 2.73
296 2966 5.362105 TGCCGGTGGAAATTAATACTACT 57.638 39.130 1.90 0.00 0.00 2.57
297 2967 5.120399 TGCCGGTGGAAATTAATACTACTG 58.880 41.667 1.90 9.39 0.00 2.74
331 3017 2.055633 TGCATGGCATGGCAGAAGG 61.056 57.895 27.48 16.50 34.58 3.46
339 3025 2.344950 GCATGGCAGAAGGATAGATCG 58.655 52.381 0.00 0.00 0.00 3.69
340 3026 2.934364 GCATGGCAGAAGGATAGATCGG 60.934 54.545 0.00 0.00 0.00 4.18
341 3027 2.381752 TGGCAGAAGGATAGATCGGA 57.618 50.000 0.00 0.00 0.00 4.55
342 3028 2.677914 TGGCAGAAGGATAGATCGGAA 58.322 47.619 0.00 0.00 0.00 4.30
343 3029 3.242867 TGGCAGAAGGATAGATCGGAAT 58.757 45.455 0.00 0.00 0.00 3.01
344 3030 4.416516 TGGCAGAAGGATAGATCGGAATA 58.583 43.478 0.00 0.00 0.00 1.75
345 3031 4.220821 TGGCAGAAGGATAGATCGGAATAC 59.779 45.833 0.00 0.00 0.00 1.89
346 3032 4.464597 GGCAGAAGGATAGATCGGAATACT 59.535 45.833 0.00 0.00 0.00 2.12
347 3033 5.652891 GGCAGAAGGATAGATCGGAATACTA 59.347 44.000 0.00 0.00 0.00 1.82
348 3034 6.404954 GGCAGAAGGATAGATCGGAATACTAC 60.405 46.154 0.00 0.00 0.00 2.73
349 3035 6.376018 GCAGAAGGATAGATCGGAATACTACT 59.624 42.308 0.00 0.00 0.00 2.57
350 3036 7.627513 GCAGAAGGATAGATCGGAATACTACTG 60.628 44.444 0.00 0.00 0.00 2.74
351 3037 7.392113 CAGAAGGATAGATCGGAATACTACTGT 59.608 40.741 0.00 0.00 0.00 3.55
352 3038 7.945664 AGAAGGATAGATCGGAATACTACTGTT 59.054 37.037 0.00 0.00 0.00 3.16
353 3039 8.480133 AAGGATAGATCGGAATACTACTGTTT 57.520 34.615 0.00 0.00 0.00 2.83
354 3040 8.480133 AGGATAGATCGGAATACTACTGTTTT 57.520 34.615 0.00 0.00 0.00 2.43
355 3041 8.361139 AGGATAGATCGGAATACTACTGTTTTG 58.639 37.037 0.00 0.00 0.00 2.44
356 3042 7.116519 GGATAGATCGGAATACTACTGTTTTGC 59.883 40.741 0.00 0.00 0.00 3.68
357 3043 5.978814 AGATCGGAATACTACTGTTTTGCT 58.021 37.500 0.00 0.00 0.00 3.91
358 3044 6.407202 AGATCGGAATACTACTGTTTTGCTT 58.593 36.000 0.00 0.00 0.00 3.91
359 3045 6.879458 AGATCGGAATACTACTGTTTTGCTTT 59.121 34.615 0.00 0.00 0.00 3.51
360 3046 6.870971 TCGGAATACTACTGTTTTGCTTTT 57.129 33.333 0.00 0.00 0.00 2.27
361 3047 7.966246 TCGGAATACTACTGTTTTGCTTTTA 57.034 32.000 0.00 0.00 0.00 1.52
362 3048 8.380743 TCGGAATACTACTGTTTTGCTTTTAA 57.619 30.769 0.00 0.00 0.00 1.52
363 3049 8.284693 TCGGAATACTACTGTTTTGCTTTTAAC 58.715 33.333 0.00 0.00 0.00 2.01
364 3050 7.267600 CGGAATACTACTGTTTTGCTTTTAACG 59.732 37.037 0.00 0.00 0.00 3.18
365 3051 8.284693 GGAATACTACTGTTTTGCTTTTAACGA 58.715 33.333 0.00 0.00 0.00 3.85
366 3052 9.821662 GAATACTACTGTTTTGCTTTTAACGAT 57.178 29.630 0.00 0.00 0.00 3.73
367 3053 9.607285 AATACTACTGTTTTGCTTTTAACGATG 57.393 29.630 0.00 0.00 0.00 3.84
368 3054 5.912955 ACTACTGTTTTGCTTTTAACGATGC 59.087 36.000 0.00 0.00 0.00 3.91
369 3055 4.677584 ACTGTTTTGCTTTTAACGATGCA 58.322 34.783 0.00 0.00 0.00 3.96
370 3056 5.288804 ACTGTTTTGCTTTTAACGATGCAT 58.711 33.333 0.00 0.00 35.27 3.96
371 3057 5.175491 ACTGTTTTGCTTTTAACGATGCATG 59.825 36.000 2.46 0.00 35.27 4.06
372 3058 4.447054 TGTTTTGCTTTTAACGATGCATGG 59.553 37.500 2.46 5.24 35.27 3.66
373 3059 2.276472 TGCTTTTAACGATGCATGGC 57.724 45.000 2.46 0.00 0.00 4.40
374 3060 1.543358 TGCTTTTAACGATGCATGGCA 59.457 42.857 2.46 0.00 44.86 4.92
383 3069 4.021559 TGCATGGCATGGTGGAAG 57.978 55.556 27.48 1.89 31.71 3.46
384 3070 1.683025 TGCATGGCATGGTGGAAGG 60.683 57.895 27.48 1.12 31.71 3.46
385 3071 1.380246 GCATGGCATGGTGGAAGGA 60.380 57.895 27.48 0.00 0.00 3.36
386 3072 0.757935 GCATGGCATGGTGGAAGGAT 60.758 55.000 27.48 0.00 0.00 3.24
387 3073 1.479205 GCATGGCATGGTGGAAGGATA 60.479 52.381 27.48 0.00 0.00 2.59
388 3074 2.511659 CATGGCATGGTGGAAGGATAG 58.488 52.381 19.80 0.00 0.00 2.08
389 3075 1.891933 TGGCATGGTGGAAGGATAGA 58.108 50.000 0.00 0.00 0.00 1.98
390 3076 2.421725 TGGCATGGTGGAAGGATAGAT 58.578 47.619 0.00 0.00 0.00 1.98
391 3077 2.373169 TGGCATGGTGGAAGGATAGATC 59.627 50.000 0.00 0.00 0.00 2.75
437 3123 1.677552 GTGTCCATGTCCGTCCCTT 59.322 57.895 0.00 0.00 0.00 3.95
438 3124 0.036306 GTGTCCATGTCCGTCCCTTT 59.964 55.000 0.00 0.00 0.00 3.11
459 3145 3.539431 TTTTGTGTTTGACAACGACGT 57.461 38.095 0.00 0.00 44.53 4.34
519 3205 2.116238 ACTACACTGTGGACTGTGGTT 58.884 47.619 17.79 4.19 46.06 3.67
628 3314 9.353999 AGTAGATGTGAACACTTTTTGAAAAAC 57.646 29.630 0.00 0.00 0.00 2.43
631 3317 9.218440 AGATGTGAACACTTTTTGAAAAACAAT 57.782 25.926 0.00 0.00 38.36 2.71
850 3568 2.932614 CGCAACACCTATCTTCTTCCTG 59.067 50.000 0.00 0.00 0.00 3.86
882 3827 0.322322 CCGCCGGCTATTTATACCCA 59.678 55.000 26.68 0.00 0.00 4.51
899 3849 1.371183 CAGCTCCACGGAGTTCCAA 59.629 57.895 14.48 0.00 41.61 3.53
900 3850 0.036010 CAGCTCCACGGAGTTCCAAT 60.036 55.000 14.48 0.00 41.61 3.16
901 3851 0.250513 AGCTCCACGGAGTTCCAATC 59.749 55.000 14.48 0.00 41.61 2.67
903 3853 0.613260 CTCCACGGAGTTCCAATCCA 59.387 55.000 4.83 0.00 41.61 3.41
904 3854 1.210478 CTCCACGGAGTTCCAATCCAT 59.790 52.381 4.83 0.00 41.61 3.41
905 3855 1.209504 TCCACGGAGTTCCAATCCATC 59.790 52.381 0.00 0.00 41.61 3.51
906 3856 1.210478 CCACGGAGTTCCAATCCATCT 59.790 52.381 0.00 0.00 41.61 2.90
907 3857 2.555199 CACGGAGTTCCAATCCATCTC 58.445 52.381 0.00 0.00 41.61 2.75
908 3858 1.486726 ACGGAGTTCCAATCCATCTCC 59.513 52.381 0.00 0.00 37.78 3.71
909 3859 1.486310 CGGAGTTCCAATCCATCTCCA 59.514 52.381 9.62 0.00 43.17 3.86
910 3860 2.743183 CGGAGTTCCAATCCATCTCCAC 60.743 54.545 9.62 0.00 43.17 4.02
911 3861 2.239654 GGAGTTCCAATCCATCTCCACA 59.760 50.000 0.00 0.00 42.72 4.17
912 3862 3.308402 GGAGTTCCAATCCATCTCCACAA 60.308 47.826 0.00 0.00 42.72 3.33
913 3863 3.944015 GAGTTCCAATCCATCTCCACAAG 59.056 47.826 0.00 0.00 0.00 3.16
914 3864 2.424956 GTTCCAATCCATCTCCACAAGC 59.575 50.000 0.00 0.00 0.00 4.01
915 3865 1.019673 CCAATCCATCTCCACAAGCG 58.980 55.000 0.00 0.00 0.00 4.68
919 3869 1.452651 CCATCTCCACAAGCGCCAT 60.453 57.895 2.29 0.00 0.00 4.40
940 3890 3.411446 TCACCACACAAGCTAATCAAGG 58.589 45.455 0.00 0.00 0.00 3.61
955 3905 0.108424 CAAGGTCTCAGCTCCTTCCG 60.108 60.000 1.49 0.00 41.44 4.30
965 3915 2.035155 TCCTTCCGAGCTCCACGA 59.965 61.111 8.47 0.00 0.00 4.35
1009 3959 0.537371 TAGATCCTCGATGGCTCGCA 60.537 55.000 0.00 0.00 44.65 5.10
1317 4960 0.672711 GGGTCTCCGTTTCTTTCCCG 60.673 60.000 0.00 0.00 0.00 5.14
1376 5400 7.497249 CCTCCACTCCTAACTTGAAAGAATATG 59.503 40.741 0.00 0.00 0.00 1.78
1386 5410 8.794335 AACTTGAAAGAATATGTTCTACTCCC 57.206 34.615 5.02 0.00 43.80 4.30
1388 5412 8.043710 ACTTGAAAGAATATGTTCTACTCCCTG 58.956 37.037 5.02 2.40 43.80 4.45
1389 5413 6.349300 TGAAAGAATATGTTCTACTCCCTGC 58.651 40.000 5.02 0.00 43.80 4.85
1391 5415 6.506538 AAGAATATGTTCTACTCCCTGCAT 57.493 37.500 5.02 0.00 43.80 3.96
1392 5416 7.618019 AAGAATATGTTCTACTCCCTGCATA 57.382 36.000 5.02 0.00 43.80 3.14
1394 5418 7.445945 AGAATATGTTCTACTCCCTGCATAAC 58.554 38.462 2.41 0.00 42.79 1.89
1395 5419 3.520290 TGTTCTACTCCCTGCATAACG 57.480 47.619 0.00 0.00 0.00 3.18
1398 5422 4.020928 TGTTCTACTCCCTGCATAACGAAA 60.021 41.667 0.00 0.00 0.00 3.46
1400 5424 4.693283 TCTACTCCCTGCATAACGAAATG 58.307 43.478 0.00 0.00 0.00 2.32
1402 5426 4.481368 ACTCCCTGCATAACGAAATGTA 57.519 40.909 0.00 0.00 0.00 2.29
1404 5428 4.816385 ACTCCCTGCATAACGAAATGTATG 59.184 41.667 0.00 0.00 0.00 2.39
1406 5430 5.056480 TCCCTGCATAACGAAATGTATGAG 58.944 41.667 0.00 0.00 0.00 2.90
1407 5431 4.319766 CCCTGCATAACGAAATGTATGAGC 60.320 45.833 0.00 0.00 0.00 4.26
1408 5432 4.448891 CTGCATAACGAAATGTATGAGCG 58.551 43.478 0.00 0.00 0.00 5.03
1409 5433 3.868661 TGCATAACGAAATGTATGAGCGT 59.131 39.130 0.00 0.00 36.68 5.07
1410 5434 4.331443 TGCATAACGAAATGTATGAGCGTT 59.669 37.500 0.00 0.00 45.62 4.84
1411 5435 5.163804 TGCATAACGAAATGTATGAGCGTTT 60.164 36.000 0.00 0.00 41.74 3.60
1412 5436 6.036191 TGCATAACGAAATGTATGAGCGTTTA 59.964 34.615 0.00 0.00 41.74 2.01
1413 5437 6.570058 GCATAACGAAATGTATGAGCGTTTAG 59.430 38.462 0.00 0.00 41.74 1.85
1415 5439 6.903883 AACGAAATGTATGAGCGTTTAGAT 57.096 33.333 0.00 0.00 41.74 1.98
1416 5440 6.512177 ACGAAATGTATGAGCGTTTAGATC 57.488 37.500 0.00 0.00 35.45 2.75
1425 5449 3.067721 AGCGTTTAGATCACTACGCTC 57.932 47.619 25.39 8.34 44.87 5.03
1426 5450 2.117910 GCGTTTAGATCACTACGCTCC 58.882 52.381 22.78 3.71 39.40 4.70
1427 5451 2.373269 CGTTTAGATCACTACGCTCCG 58.627 52.381 0.00 0.00 0.00 4.63
1428 5452 2.223203 CGTTTAGATCACTACGCTCCGT 60.223 50.000 0.00 0.00 44.35 4.69
1429 5453 3.001634 CGTTTAGATCACTACGCTCCGTA 59.998 47.826 0.00 0.00 41.54 4.02
1430 5454 4.319333 CGTTTAGATCACTACGCTCCGTAT 60.319 45.833 0.00 0.00 41.53 3.06
1431 5455 5.107337 CGTTTAGATCACTACGCTCCGTATA 60.107 44.000 0.00 0.00 41.53 1.47
1432 5456 6.305639 GTTTAGATCACTACGCTCCGTATAG 58.694 44.000 0.00 0.00 41.53 1.31
1433 5457 4.268797 AGATCACTACGCTCCGTATAGA 57.731 45.455 0.00 0.83 41.53 1.98
1434 5458 4.247258 AGATCACTACGCTCCGTATAGAG 58.753 47.826 0.00 0.00 41.53 2.43
1435 5459 2.763933 TCACTACGCTCCGTATAGAGG 58.236 52.381 0.00 0.00 41.53 3.69
1459 5483 6.369065 GGGAGTACTCATTAGCCATTTAATCG 59.631 42.308 23.91 0.00 0.00 3.34
1520 5549 0.451383 GTCTGTGTGTGTTTGCAGCA 59.549 50.000 0.00 0.00 0.00 4.41
1535 5972 5.469373 TTGCAGCATTCACTAAGTTATCG 57.531 39.130 0.00 0.00 0.00 2.92
1537 5974 3.871594 GCAGCATTCACTAAGTTATCGGT 59.128 43.478 0.00 0.00 0.00 4.69
1558 5998 0.107312 AGCATCATCACACCAGGCTC 60.107 55.000 0.00 0.00 0.00 4.70
1559 5999 0.107312 GCATCATCACACCAGGCTCT 60.107 55.000 0.00 0.00 0.00 4.09
1561 6001 2.831333 CATCATCACACCAGGCTCTAC 58.169 52.381 0.00 0.00 0.00 2.59
1562 6002 1.937191 TCATCACACCAGGCTCTACA 58.063 50.000 0.00 0.00 0.00 2.74
1565 6005 0.904649 TCACACCAGGCTCTACATGG 59.095 55.000 0.00 0.00 40.10 3.66
1609 6062 5.185056 TGTCTACTGTTGCTACTTCTGCATA 59.815 40.000 0.00 0.00 40.34 3.14
1619 6072 3.747099 ACTTCTGCATATGTTCGTTGC 57.253 42.857 4.29 0.00 36.91 4.17
1627 6084 3.429085 CATATGTTCGTTGCTGCTTTCC 58.571 45.455 0.00 0.00 0.00 3.13
1728 6859 7.913297 TGTGTTGAGCTTAAGTTTTTATGACAC 59.087 33.333 4.02 8.99 0.00 3.67
1814 7017 6.613755 AGCAAGTGTTATTAACGTCTTTGT 57.386 33.333 11.48 3.54 0.00 2.83
1815 7018 7.023197 AGCAAGTGTTATTAACGTCTTTGTT 57.977 32.000 11.48 5.50 35.86 2.83
1816 7019 7.477494 AGCAAGTGTTATTAACGTCTTTGTTT 58.523 30.769 11.48 2.49 33.32 2.83
1817 7020 7.431084 AGCAAGTGTTATTAACGTCTTTGTTTG 59.569 33.333 11.48 5.58 33.32 2.93
1842 7045 3.160545 CAACACGGCACATTCGTAATTC 58.839 45.455 0.00 0.00 38.94 2.17
1854 7057 9.422196 GCACATTCGTAATTCTGTAACTAAATC 57.578 33.333 0.00 0.00 0.00 2.17
1884 7088 5.508200 AAAAACTTGCCGATGTCAACTTA 57.492 34.783 0.00 0.00 0.00 2.24
1885 7089 5.508200 AAAACTTGCCGATGTCAACTTAA 57.492 34.783 0.00 0.00 0.00 1.85
1886 7090 5.705609 AAACTTGCCGATGTCAACTTAAT 57.294 34.783 0.00 0.00 0.00 1.40
1887 7091 5.705609 AACTTGCCGATGTCAACTTAATT 57.294 34.783 0.00 0.00 0.00 1.40
1888 7092 6.811253 AACTTGCCGATGTCAACTTAATTA 57.189 33.333 0.00 0.00 0.00 1.40
1925 7129 0.821711 TTTCTGACCACCGGCAAAGG 60.822 55.000 0.00 0.37 37.30 3.11
1934 7138 1.204467 CACCGGCAAAGGCAACATAAT 59.796 47.619 0.00 0.00 43.71 1.28
1941 7145 5.062058 CGGCAAAGGCAACATAATTAACTTG 59.938 40.000 0.00 0.00 43.71 3.16
2008 7214 4.832823 CCCCTCCAAAGTAACAACAATCTT 59.167 41.667 0.00 0.00 0.00 2.40
2035 7243 6.514048 GCAACATGGGATACTATCAAAAGCTC 60.514 42.308 0.00 0.00 34.29 4.09
2044 7252 5.401531 ACTATCAAAAGCTCCTACAACGA 57.598 39.130 0.00 0.00 0.00 3.85
2047 7255 7.727181 ACTATCAAAAGCTCCTACAACGATAT 58.273 34.615 0.00 0.00 0.00 1.63
2050 7258 8.594881 ATCAAAAGCTCCTACAACGATATAAG 57.405 34.615 0.00 0.00 0.00 1.73
2052 7260 7.921214 TCAAAAGCTCCTACAACGATATAAGAG 59.079 37.037 0.00 0.00 0.00 2.85
2054 7262 4.827835 AGCTCCTACAACGATATAAGAGCA 59.172 41.667 16.87 0.00 46.11 4.26
2056 7264 5.402867 GCTCCTACAACGATATAAGAGCAAC 59.597 44.000 12.07 0.00 43.79 4.17
2057 7265 6.710597 TCCTACAACGATATAAGAGCAACT 57.289 37.500 0.00 0.00 0.00 3.16
2059 7267 6.546403 TCCTACAACGATATAAGAGCAACTCT 59.454 38.462 0.00 0.00 43.37 3.24
2062 7270 6.740110 ACAACGATATAAGAGCAACTCTAGG 58.260 40.000 0.00 0.00 40.28 3.02
2064 7272 6.811253 ACGATATAAGAGCAACTCTAGGAG 57.189 41.667 0.00 0.00 40.28 3.69
2066 7274 6.428771 ACGATATAAGAGCAACTCTAGGAGAC 59.571 42.308 0.00 0.00 40.28 3.36
2068 7276 2.153034 AGAGCAACTCTAGGAGACCC 57.847 55.000 1.31 0.00 39.28 4.46
2069 7277 1.116308 GAGCAACTCTAGGAGACCCC 58.884 60.000 1.31 0.00 33.32 4.95
2070 7278 0.684805 AGCAACTCTAGGAGACCCCG 60.685 60.000 1.31 0.00 40.87 5.73
2073 7281 0.032017 AACTCTAGGAGACCCCGCAT 60.032 55.000 1.31 0.00 40.87 4.73
2075 7283 1.123928 CTCTAGGAGACCCCGCATTT 58.876 55.000 0.00 0.00 40.87 2.32
2077 7285 1.209504 TCTAGGAGACCCCGCATTTTG 59.790 52.381 0.00 0.00 40.87 2.44
2080 7288 3.051392 GAGACCCCGCATTTTGCCG 62.051 63.158 0.00 0.00 41.12 5.69
2082 7290 3.336715 GACCCCGCATTTTGCCGAC 62.337 63.158 0.00 0.00 41.12 4.79
2083 7291 4.128388 CCCCGCATTTTGCCGACC 62.128 66.667 0.00 0.00 41.12 4.79
2084 7292 4.128388 CCCGCATTTTGCCGACCC 62.128 66.667 0.00 0.00 41.12 4.46
2086 7294 3.732892 CGCATTTTGCCGACCCGT 61.733 61.111 0.00 0.00 41.12 5.28
2087 7295 2.392181 CGCATTTTGCCGACCCGTA 61.392 57.895 0.00 0.00 41.12 4.02
2088 7296 1.877367 GCATTTTGCCGACCCGTAA 59.123 52.632 0.00 0.00 37.42 3.18
2090 7298 1.336056 GCATTTTGCCGACCCGTAAAA 60.336 47.619 0.00 0.00 37.42 1.52
2091 7299 2.591133 CATTTTGCCGACCCGTAAAAG 58.409 47.619 0.00 0.00 29.80 2.27
2092 7300 0.953003 TTTTGCCGACCCGTAAAAGG 59.047 50.000 0.00 0.00 0.00 3.11
2103 7311 1.324383 CGTAAAAGGGGTTTGCAGGT 58.676 50.000 0.00 0.00 31.75 4.00
2104 7312 1.268625 CGTAAAAGGGGTTTGCAGGTC 59.731 52.381 0.00 0.00 31.75 3.85
2106 7314 1.744320 AAAAGGGGTTTGCAGGTCGC 61.744 55.000 0.00 0.00 42.89 5.19
2135 7343 2.539476 GGTTATGCAGGCCGAAATTTG 58.461 47.619 0.00 0.00 0.00 2.32
2137 7345 0.100325 TATGCAGGCCGAAATTTGCG 59.900 50.000 7.78 0.00 39.34 4.85
2152 7360 2.125673 GCGGCGGCAGACTAGAAA 60.126 61.111 9.78 0.00 39.62 2.52
2153 7361 1.521681 GCGGCGGCAGACTAGAAAT 60.522 57.895 9.78 0.00 39.62 2.17
2154 7362 1.491505 GCGGCGGCAGACTAGAAATC 61.492 60.000 9.78 0.00 39.62 2.17
2156 7364 1.491505 GGCGGCAGACTAGAAATCGC 61.492 60.000 3.07 5.29 40.77 4.58
2160 7368 2.222819 CGGCAGACTAGAAATCGCAAAC 60.223 50.000 0.00 0.00 0.00 2.93
2161 7369 2.742053 GGCAGACTAGAAATCGCAAACA 59.258 45.455 0.00 0.00 0.00 2.83
2162 7370 3.188460 GGCAGACTAGAAATCGCAAACAA 59.812 43.478 0.00 0.00 0.00 2.83
2163 7371 4.320202 GGCAGACTAGAAATCGCAAACAAA 60.320 41.667 0.00 0.00 0.00 2.83
2164 7372 4.613031 GCAGACTAGAAATCGCAAACAAAC 59.387 41.667 0.00 0.00 0.00 2.93
2165 7373 5.747565 CAGACTAGAAATCGCAAACAAACA 58.252 37.500 0.00 0.00 0.00 2.83
2166 7374 5.621228 CAGACTAGAAATCGCAAACAAACAC 59.379 40.000 0.00 0.00 0.00 3.32
2167 7375 4.855531 ACTAGAAATCGCAAACAAACACC 58.144 39.130 0.00 0.00 0.00 4.16
2168 7376 4.578928 ACTAGAAATCGCAAACAAACACCT 59.421 37.500 0.00 0.00 0.00 4.00
2171 7485 5.897050 AGAAATCGCAAACAAACACCTAAA 58.103 33.333 0.00 0.00 0.00 1.85
2197 7511 1.462791 AAAAAGTTGTTTCGCGCGAG 58.537 45.000 32.74 7.02 0.00 5.03
2198 7512 0.653636 AAAAGTTGTTTCGCGCGAGA 59.346 45.000 32.74 26.60 0.00 4.04
2199 7513 0.653636 AAAGTTGTTTCGCGCGAGAA 59.346 45.000 32.74 24.62 0.00 2.87
2200 7514 0.653636 AAGTTGTTTCGCGCGAGAAA 59.346 45.000 32.74 29.99 37.74 2.52
2202 7516 1.263217 AGTTGTTTCGCGCGAGAAATT 59.737 42.857 34.40 20.36 41.46 1.82
2203 7517 2.041244 GTTGTTTCGCGCGAGAAATTT 58.959 42.857 34.40 0.00 41.46 1.82
2204 7518 2.392933 TGTTTCGCGCGAGAAATTTT 57.607 40.000 34.40 0.00 41.46 1.82
2206 7520 3.874706 TGTTTCGCGCGAGAAATTTTAA 58.125 36.364 34.40 18.52 41.46 1.52
2207 7521 3.903644 TGTTTCGCGCGAGAAATTTTAAG 59.096 39.130 34.40 0.00 41.46 1.85
2208 7522 2.153680 TCGCGCGAGAAATTTTAAGC 57.846 45.000 31.40 0.00 0.00 3.09
2209 7523 1.461512 TCGCGCGAGAAATTTTAAGCA 59.538 42.857 31.40 0.00 0.00 3.91
2210 7524 2.096169 TCGCGCGAGAAATTTTAAGCAA 60.096 40.909 31.40 0.00 0.00 3.91
2211 7525 2.025222 CGCGCGAGAAATTTTAAGCAAC 59.975 45.455 28.94 4.23 0.00 4.17
2212 7526 2.977169 GCGCGAGAAATTTTAAGCAACA 59.023 40.909 12.10 0.00 0.00 3.33
2213 7527 3.058129 GCGCGAGAAATTTTAAGCAACAG 59.942 43.478 12.10 0.07 0.00 3.16
2214 7528 3.058129 CGCGAGAAATTTTAAGCAACAGC 59.942 43.478 0.00 0.00 0.00 4.40
2217 7531 4.551126 CGAGAAATTTTAAGCAACAGCTCG 59.449 41.667 0.00 0.00 37.72 5.03
2219 7533 2.636768 ATTTTAAGCAACAGCTCGCC 57.363 45.000 0.00 0.00 37.72 5.54
2220 7534 0.237235 TTTTAAGCAACAGCTCGCCG 59.763 50.000 0.00 0.00 37.72 6.46
2221 7535 1.573829 TTTAAGCAACAGCTCGCCGG 61.574 55.000 0.00 0.00 37.72 6.13
2223 7537 2.835701 TAAGCAACAGCTCGCCGGAG 62.836 60.000 5.05 0.00 43.46 4.63
2236 7550 2.727647 CGGAGCTCGCTCGCATAC 60.728 66.667 7.83 0.00 43.59 2.39
2239 7553 1.280886 GGAGCTCGCTCGCATACATG 61.281 60.000 7.83 0.00 43.59 3.21
2240 7554 1.280886 GAGCTCGCTCGCATACATGG 61.281 60.000 0.00 0.00 33.06 3.66
2242 7556 1.154205 GCTCGCTCGCATACATGGTT 61.154 55.000 0.00 0.00 0.00 3.67
2243 7557 0.855349 CTCGCTCGCATACATGGTTC 59.145 55.000 0.00 0.00 0.00 3.62
2244 7558 0.459899 TCGCTCGCATACATGGTTCT 59.540 50.000 0.00 0.00 0.00 3.01
2246 7560 1.258982 CGCTCGCATACATGGTTCTTC 59.741 52.381 0.00 0.00 0.00 2.87
2247 7561 2.555199 GCTCGCATACATGGTTCTTCT 58.445 47.619 0.00 0.00 0.00 2.85
2248 7562 2.939103 GCTCGCATACATGGTTCTTCTT 59.061 45.455 0.00 0.00 0.00 2.52
2249 7563 3.001736 GCTCGCATACATGGTTCTTCTTC 59.998 47.826 0.00 0.00 0.00 2.87
2250 7564 3.186909 TCGCATACATGGTTCTTCTTCG 58.813 45.455 0.00 0.00 0.00 3.79
2251 7565 2.285834 CGCATACATGGTTCTTCTTCGC 60.286 50.000 0.00 0.00 0.00 4.70
2253 7567 3.313526 GCATACATGGTTCTTCTTCGCAT 59.686 43.478 0.00 0.00 0.00 4.73
2255 7569 5.007626 GCATACATGGTTCTTCTTCGCATAA 59.992 40.000 0.00 0.00 0.00 1.90
2256 7570 6.293626 GCATACATGGTTCTTCTTCGCATAAT 60.294 38.462 0.00 0.00 0.00 1.28
2259 7573 7.251704 ACATGGTTCTTCTTCGCATAATAAG 57.748 36.000 0.00 0.00 0.00 1.73
2260 7574 6.823689 ACATGGTTCTTCTTCGCATAATAAGT 59.176 34.615 0.00 0.00 0.00 2.24
2261 7575 7.336931 ACATGGTTCTTCTTCGCATAATAAGTT 59.663 33.333 0.00 0.00 0.00 2.66
2262 7576 7.303634 TGGTTCTTCTTCGCATAATAAGTTC 57.696 36.000 0.00 0.00 0.00 3.01
2263 7577 6.876789 TGGTTCTTCTTCGCATAATAAGTTCA 59.123 34.615 0.00 0.00 0.00 3.18
2264 7578 7.552687 TGGTTCTTCTTCGCATAATAAGTTCAT 59.447 33.333 0.00 0.00 0.00 2.57
2266 7580 9.851043 GTTCTTCTTCGCATAATAAGTTCATAC 57.149 33.333 0.00 0.00 0.00 2.39
2267 7581 9.594478 TTCTTCTTCGCATAATAAGTTCATACA 57.406 29.630 0.00 0.00 0.00 2.29
2269 7583 7.389603 TCTTCGCATAATAAGTTCATACACG 57.610 36.000 0.00 0.00 0.00 4.49
2270 7584 5.570262 TCGCATAATAAGTTCATACACGC 57.430 39.130 0.00 0.00 0.00 5.34
2271 7585 4.446385 TCGCATAATAAGTTCATACACGCC 59.554 41.667 0.00 0.00 0.00 5.68
2274 7588 5.007234 GCATAATAAGTTCATACACGCCACA 59.993 40.000 0.00 0.00 0.00 4.17
2276 7590 7.095397 GCATAATAAGTTCATACACGCCACATA 60.095 37.037 0.00 0.00 0.00 2.29
2277 7591 6.598753 AATAAGTTCATACACGCCACATAC 57.401 37.500 0.00 0.00 0.00 2.39
2281 7595 5.047847 AGTTCATACACGCCACATACATAC 58.952 41.667 0.00 0.00 0.00 2.39
2282 7596 3.634283 TCATACACGCCACATACATACG 58.366 45.455 0.00 0.00 0.00 3.06
2283 7597 3.067040 TCATACACGCCACATACATACGT 59.933 43.478 0.00 0.00 37.47 3.57
2286 8620 2.684374 ACACGCCACATACATACGTAGA 59.316 45.455 0.08 0.00 34.79 2.59
2291 8625 4.023792 CGCCACATACATACGTAGAGGTTA 60.024 45.833 0.08 0.00 0.00 2.85
2292 8626 5.335426 CGCCACATACATACGTAGAGGTTAT 60.335 44.000 0.08 0.00 0.00 1.89
2293 8627 6.128200 CGCCACATACATACGTAGAGGTTATA 60.128 42.308 0.08 0.00 0.00 0.98
2314 8648 1.749334 ATGCTAGACAGGGCCTACGC 61.749 60.000 5.28 5.21 0.00 4.42
2317 8651 0.953003 CTAGACAGGGCCTACGCTAC 59.047 60.000 5.28 0.00 37.30 3.58
2318 8652 0.549950 TAGACAGGGCCTACGCTACT 59.450 55.000 5.28 2.23 37.30 2.57
2319 8653 1.038130 AGACAGGGCCTACGCTACTG 61.038 60.000 5.28 1.44 42.12 2.74
2320 8654 2.107141 CAGGGCCTACGCTACTGC 59.893 66.667 5.28 0.00 37.30 4.40
2321 8655 2.363795 AGGGCCTACGCTACTGCA 60.364 61.111 2.82 0.00 37.30 4.41
2323 8657 1.301009 GGGCCTACGCTACTGCATC 60.301 63.158 0.84 0.00 39.64 3.91
2324 8658 1.441729 GGCCTACGCTACTGCATCA 59.558 57.895 0.00 0.00 39.64 3.07
2325 8659 0.876342 GGCCTACGCTACTGCATCAC 60.876 60.000 0.00 0.00 39.64 3.06
2326 8660 0.103208 GCCTACGCTACTGCATCACT 59.897 55.000 0.00 0.00 39.64 3.41
2327 8661 1.845266 CCTACGCTACTGCATCACTG 58.155 55.000 0.00 0.00 39.64 3.66
2342 8676 4.304110 CATCACTGCAACAAAATTGAGCT 58.696 39.130 13.35 0.00 35.16 4.09
2343 8677 3.968649 TCACTGCAACAAAATTGAGCTC 58.031 40.909 6.82 6.82 35.16 4.09
2344 8678 3.380954 TCACTGCAACAAAATTGAGCTCA 59.619 39.130 13.74 13.74 35.16 4.26
2345 8679 3.488310 CACTGCAACAAAATTGAGCTCAC 59.512 43.478 18.03 1.70 35.16 3.51
2346 8680 3.054878 CTGCAACAAAATTGAGCTCACC 58.945 45.455 18.03 0.00 35.16 4.02
2347 8681 2.429971 TGCAACAAAATTGAGCTCACCA 59.570 40.909 18.03 2.52 35.16 4.17
2348 8682 3.054878 GCAACAAAATTGAGCTCACCAG 58.945 45.455 18.03 7.56 32.80 4.00
2349 8683 3.243501 GCAACAAAATTGAGCTCACCAGA 60.244 43.478 18.03 1.16 32.80 3.86
2350 8684 4.543692 CAACAAAATTGAGCTCACCAGAG 58.456 43.478 18.03 9.42 44.96 3.35
2358 8692 2.183811 CTCACCAGAGCTCCTGCG 59.816 66.667 10.93 5.35 45.42 5.18
2359 8693 3.368190 CTCACCAGAGCTCCTGCGG 62.368 68.421 10.93 8.79 45.42 5.69
2360 8694 3.699894 CACCAGAGCTCCTGCGGT 61.700 66.667 10.93 9.47 45.42 5.68
2361 8695 2.037367 ACCAGAGCTCCTGCGGTA 59.963 61.111 10.93 0.00 45.42 4.02
2362 8696 2.055042 ACCAGAGCTCCTGCGGTAG 61.055 63.158 10.93 0.00 45.42 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 9.624697 ATTGTAACTTTGCATAGTGTTGTTATG 57.375 29.630 10.73 0.00 0.00 1.90
228 2898 1.330234 TCAATGCCAGCAACATGTGT 58.670 45.000 0.00 0.00 0.00 3.72
294 2964 4.677584 TGCATCGTTAAAAGCAAAACAGT 58.322 34.783 0.00 0.00 33.48 3.55
295 2965 5.388682 CCATGCATCGTTAAAAGCAAAACAG 60.389 40.000 0.00 0.00 40.76 3.16
296 2966 4.447054 CCATGCATCGTTAAAAGCAAAACA 59.553 37.500 0.00 0.00 40.76 2.83
297 2967 4.666402 GCCATGCATCGTTAAAAGCAAAAC 60.666 41.667 0.00 0.00 40.76 2.43
325 3011 7.392113 ACAGTAGTATTCCGATCTATCCTTCTG 59.608 40.741 0.00 0.00 0.00 3.02
329 3015 8.361139 CAAAACAGTAGTATTCCGATCTATCCT 58.639 37.037 0.00 0.00 0.00 3.24
331 3017 7.868415 AGCAAAACAGTAGTATTCCGATCTATC 59.132 37.037 0.00 0.00 0.00 2.08
339 3025 8.284693 TCGTTAAAAGCAAAACAGTAGTATTCC 58.715 33.333 0.00 0.00 0.00 3.01
340 3026 9.821662 ATCGTTAAAAGCAAAACAGTAGTATTC 57.178 29.630 0.00 0.00 0.00 1.75
341 3027 9.607285 CATCGTTAAAAGCAAAACAGTAGTATT 57.393 29.630 0.00 0.00 0.00 1.89
342 3028 7.749126 GCATCGTTAAAAGCAAAACAGTAGTAT 59.251 33.333 0.00 0.00 0.00 2.12
343 3029 7.073265 GCATCGTTAAAAGCAAAACAGTAGTA 58.927 34.615 0.00 0.00 0.00 1.82
344 3030 5.912955 GCATCGTTAAAAGCAAAACAGTAGT 59.087 36.000 0.00 0.00 0.00 2.73
345 3031 5.912396 TGCATCGTTAAAAGCAAAACAGTAG 59.088 36.000 0.00 0.00 33.48 2.57
346 3032 5.822278 TGCATCGTTAAAAGCAAAACAGTA 58.178 33.333 0.00 0.00 33.48 2.74
347 3033 4.677584 TGCATCGTTAAAAGCAAAACAGT 58.322 34.783 0.00 0.00 33.48 3.55
348 3034 5.388682 CCATGCATCGTTAAAAGCAAAACAG 60.389 40.000 0.00 0.00 40.76 3.16
349 3035 4.447054 CCATGCATCGTTAAAAGCAAAACA 59.553 37.500 0.00 0.00 40.76 2.83
350 3036 4.666402 GCCATGCATCGTTAAAAGCAAAAC 60.666 41.667 0.00 0.00 40.76 2.43
351 3037 3.431572 GCCATGCATCGTTAAAAGCAAAA 59.568 39.130 0.00 0.00 40.76 2.44
352 3038 2.992543 GCCATGCATCGTTAAAAGCAAA 59.007 40.909 0.00 0.00 40.76 3.68
353 3039 2.029560 TGCCATGCATCGTTAAAAGCAA 60.030 40.909 0.00 0.00 40.76 3.91
354 3040 1.543358 TGCCATGCATCGTTAAAAGCA 59.457 42.857 0.00 0.00 41.73 3.91
355 3041 2.276472 TGCCATGCATCGTTAAAAGC 57.724 45.000 0.00 0.00 31.71 3.51
366 3052 1.683025 CCTTCCACCATGCCATGCA 60.683 57.895 0.00 0.00 44.86 3.96
367 3053 0.757935 ATCCTTCCACCATGCCATGC 60.758 55.000 0.00 0.00 0.00 4.06
368 3054 2.107031 TCTATCCTTCCACCATGCCATG 59.893 50.000 0.00 0.00 0.00 3.66
369 3055 2.421725 TCTATCCTTCCACCATGCCAT 58.578 47.619 0.00 0.00 0.00 4.40
370 3056 1.891933 TCTATCCTTCCACCATGCCA 58.108 50.000 0.00 0.00 0.00 4.92
371 3057 2.613977 CGATCTATCCTTCCACCATGCC 60.614 54.545 0.00 0.00 0.00 4.40
372 3058 2.613977 CCGATCTATCCTTCCACCATGC 60.614 54.545 0.00 0.00 0.00 4.06
373 3059 2.634940 ACCGATCTATCCTTCCACCATG 59.365 50.000 0.00 0.00 0.00 3.66
374 3060 2.900546 GACCGATCTATCCTTCCACCAT 59.099 50.000 0.00 0.00 0.00 3.55
375 3061 2.317040 GACCGATCTATCCTTCCACCA 58.683 52.381 0.00 0.00 0.00 4.17
376 3062 1.269998 CGACCGATCTATCCTTCCACC 59.730 57.143 0.00 0.00 0.00 4.61
377 3063 1.955080 ACGACCGATCTATCCTTCCAC 59.045 52.381 0.00 0.00 0.00 4.02
378 3064 2.359981 ACGACCGATCTATCCTTCCA 57.640 50.000 0.00 0.00 0.00 3.53
379 3065 3.410508 AGTACGACCGATCTATCCTTCC 58.589 50.000 0.00 0.00 0.00 3.46
380 3066 4.063689 TGAGTACGACCGATCTATCCTTC 58.936 47.826 0.00 0.00 0.00 3.46
381 3067 4.082665 TGAGTACGACCGATCTATCCTT 57.917 45.455 0.00 0.00 0.00 3.36
382 3068 3.766068 TGAGTACGACCGATCTATCCT 57.234 47.619 0.00 0.00 0.00 3.24
383 3069 4.825546 TTTGAGTACGACCGATCTATCC 57.174 45.455 0.00 0.00 0.00 2.59
384 3070 7.695869 AAATTTTGAGTACGACCGATCTATC 57.304 36.000 0.00 0.00 0.00 2.08
385 3071 8.411683 AGTAAATTTTGAGTACGACCGATCTAT 58.588 33.333 0.00 0.00 0.00 1.98
386 3072 7.765307 AGTAAATTTTGAGTACGACCGATCTA 58.235 34.615 0.00 0.00 0.00 1.98
387 3073 6.628185 AGTAAATTTTGAGTACGACCGATCT 58.372 36.000 0.00 0.00 0.00 2.75
388 3074 6.020041 GGAGTAAATTTTGAGTACGACCGATC 60.020 42.308 0.00 0.00 0.00 3.69
389 3075 5.809051 GGAGTAAATTTTGAGTACGACCGAT 59.191 40.000 0.00 0.00 0.00 4.18
390 3076 5.163513 GGAGTAAATTTTGAGTACGACCGA 58.836 41.667 0.00 0.00 0.00 4.69
391 3077 4.925054 TGGAGTAAATTTTGAGTACGACCG 59.075 41.667 0.00 0.00 0.00 4.79
438 3124 3.886549 ACGTCGTTGTCAAACACAAAAA 58.113 36.364 0.00 0.00 46.90 1.94
459 3145 2.176889 GCCAGTGGTGAGTAGGTAGAA 58.823 52.381 11.74 0.00 0.00 2.10
519 3205 2.280797 GGAACCTGTGTGCGAGCA 60.281 61.111 0.00 0.00 0.00 4.26
631 3317 7.979537 ACGCTTCTTTGTTCACATCTACATATA 59.020 33.333 0.00 0.00 0.00 0.86
632 3318 6.818644 ACGCTTCTTTGTTCACATCTACATAT 59.181 34.615 0.00 0.00 0.00 1.78
633 3319 6.163476 ACGCTTCTTTGTTCACATCTACATA 58.837 36.000 0.00 0.00 0.00 2.29
684 3377 1.739562 GGATCATGGATCGCTCGGC 60.740 63.158 0.00 0.00 39.72 5.54
689 3382 2.263077 GTACGATGGATCATGGATCGC 58.737 52.381 12.76 3.57 42.16 4.58
790 3491 3.788766 GACGGTGGTGCGTGCATC 61.789 66.667 0.00 0.00 0.00 3.91
882 3827 0.250513 GATTGGAACTCCGTGGAGCT 59.749 55.000 15.80 3.37 45.54 4.09
899 3849 1.153086 GGCGCTTGTGGAGATGGAT 60.153 57.895 7.64 0.00 0.00 3.41
900 3850 1.913951 ATGGCGCTTGTGGAGATGGA 61.914 55.000 7.64 0.00 0.00 3.41
901 3851 1.442526 GATGGCGCTTGTGGAGATGG 61.443 60.000 7.64 0.00 0.00 3.51
903 3853 0.745845 GTGATGGCGCTTGTGGAGAT 60.746 55.000 7.64 0.00 0.00 2.75
904 3854 1.375908 GTGATGGCGCTTGTGGAGA 60.376 57.895 7.64 0.00 0.00 3.71
905 3855 2.401766 GGTGATGGCGCTTGTGGAG 61.402 63.158 7.64 0.00 0.00 3.86
906 3856 2.359850 GGTGATGGCGCTTGTGGA 60.360 61.111 7.64 0.00 0.00 4.02
907 3857 2.672651 TGGTGATGGCGCTTGTGG 60.673 61.111 7.64 0.00 0.00 4.17
908 3858 2.260154 TGTGGTGATGGCGCTTGTG 61.260 57.895 7.64 0.00 0.00 3.33
909 3859 2.112928 TGTGGTGATGGCGCTTGT 59.887 55.556 7.64 0.00 0.00 3.16
910 3860 1.794151 TTGTGTGGTGATGGCGCTTG 61.794 55.000 7.64 0.00 0.00 4.01
911 3861 1.518056 CTTGTGTGGTGATGGCGCTT 61.518 55.000 7.64 0.00 0.00 4.68
912 3862 1.968017 CTTGTGTGGTGATGGCGCT 60.968 57.895 7.64 0.00 0.00 5.92
913 3863 2.562912 CTTGTGTGGTGATGGCGC 59.437 61.111 0.00 0.00 0.00 6.53
914 3864 0.673333 TAGCTTGTGTGGTGATGGCG 60.673 55.000 0.00 0.00 0.00 5.69
915 3865 1.533625 TTAGCTTGTGTGGTGATGGC 58.466 50.000 0.00 0.00 0.00 4.40
919 3869 3.181445 ACCTTGATTAGCTTGTGTGGTGA 60.181 43.478 0.00 0.00 0.00 4.02
955 3905 0.391661 TGCTGGAAATCGTGGAGCTC 60.392 55.000 4.71 4.71 0.00 4.09
965 3915 0.895100 TCGGCTTGCTTGCTGGAAAT 60.895 50.000 9.73 0.00 39.62 2.17
1050 4000 4.451150 GACGCCATCTCCGCCACA 62.451 66.667 0.00 0.00 0.00 4.17
1299 4565 0.319405 TCGGGAAAGAAACGGAGACC 59.681 55.000 0.00 0.00 0.00 3.85
1308 4574 2.882137 GTTGGTGTTGATCGGGAAAGAA 59.118 45.455 0.00 0.00 0.00 2.52
1317 4960 2.602217 GCAGTTGACGTTGGTGTTGATC 60.602 50.000 0.00 0.00 0.00 2.92
1376 5400 3.795623 TCGTTATGCAGGGAGTAGAAC 57.204 47.619 0.00 0.00 31.76 3.01
1383 5407 5.029807 TCATACATTTCGTTATGCAGGGA 57.970 39.130 0.00 0.00 0.00 4.20
1384 5408 4.319766 GCTCATACATTTCGTTATGCAGGG 60.320 45.833 0.00 0.00 0.00 4.45
1385 5409 4.609113 CGCTCATACATTTCGTTATGCAGG 60.609 45.833 0.00 0.00 0.00 4.85
1386 5410 4.025730 ACGCTCATACATTTCGTTATGCAG 60.026 41.667 0.00 0.00 0.00 4.41
1388 5412 4.452890 ACGCTCATACATTTCGTTATGC 57.547 40.909 0.00 0.00 0.00 3.14
1389 5413 7.837505 TCTAAACGCTCATACATTTCGTTATG 58.162 34.615 0.00 0.00 41.67 1.90
1391 5415 7.703197 TGATCTAAACGCTCATACATTTCGTTA 59.297 33.333 0.00 0.00 41.67 3.18
1392 5416 6.533723 TGATCTAAACGCTCATACATTTCGTT 59.466 34.615 0.00 0.00 43.93 3.85
1394 5418 6.199154 AGTGATCTAAACGCTCATACATTTCG 59.801 38.462 0.00 0.00 0.00 3.46
1395 5419 7.470289 AGTGATCTAAACGCTCATACATTTC 57.530 36.000 0.00 0.00 0.00 2.17
1398 5422 6.143496 CGTAGTGATCTAAACGCTCATACAT 58.857 40.000 0.00 0.00 0.00 2.29
1400 5424 4.379204 GCGTAGTGATCTAAACGCTCATAC 59.621 45.833 22.97 0.00 38.08 2.39
1402 5426 3.066900 AGCGTAGTGATCTAAACGCTCAT 59.933 43.478 25.53 12.18 43.46 2.90
1404 5428 3.067721 AGCGTAGTGATCTAAACGCTC 57.932 47.619 25.53 8.85 43.46 5.03
1406 5430 2.117910 GGAGCGTAGTGATCTAAACGC 58.882 52.381 22.86 22.86 39.94 4.84
1407 5431 2.223203 ACGGAGCGTAGTGATCTAAACG 60.223 50.000 9.10 9.10 38.73 3.60
1408 5432 3.417690 ACGGAGCGTAGTGATCTAAAC 57.582 47.619 0.00 0.00 38.73 2.01
1409 5433 6.226052 TCTATACGGAGCGTAGTGATCTAAA 58.774 40.000 0.00 0.00 45.45 1.85
1410 5434 5.787380 TCTATACGGAGCGTAGTGATCTAA 58.213 41.667 0.00 0.00 45.45 2.10
1411 5435 5.397142 TCTATACGGAGCGTAGTGATCTA 57.603 43.478 0.00 0.00 45.45 1.98
1412 5436 4.247258 CTCTATACGGAGCGTAGTGATCT 58.753 47.826 0.00 0.00 45.45 2.75
1413 5437 3.371591 CCTCTATACGGAGCGTAGTGATC 59.628 52.174 0.00 0.00 45.45 2.92
1415 5439 2.549563 CCCTCTATACGGAGCGTAGTGA 60.550 54.545 0.00 0.00 45.45 3.41
1416 5440 1.805345 CCCTCTATACGGAGCGTAGTG 59.195 57.143 0.00 0.00 45.45 2.74
1417 5441 1.696336 TCCCTCTATACGGAGCGTAGT 59.304 52.381 0.00 0.00 45.45 2.73
1418 5442 2.348660 CTCCCTCTATACGGAGCGTAG 58.651 57.143 0.00 0.00 45.45 3.51
1424 5448 5.579753 AATGAGTACTCCCTCTATACGGA 57.420 43.478 20.11 0.00 32.50 4.69
1425 5449 5.354792 GCTAATGAGTACTCCCTCTATACGG 59.645 48.000 20.11 2.57 32.50 4.02
1426 5450 5.354792 GGCTAATGAGTACTCCCTCTATACG 59.645 48.000 20.11 3.11 32.50 3.06
1427 5451 6.246919 TGGCTAATGAGTACTCCCTCTATAC 58.753 44.000 20.11 4.80 32.50 1.47
1428 5452 6.464530 TGGCTAATGAGTACTCCCTCTATA 57.535 41.667 20.11 0.00 32.50 1.31
1429 5453 5.340891 TGGCTAATGAGTACTCCCTCTAT 57.659 43.478 20.11 3.66 32.50 1.98
1430 5454 4.808767 TGGCTAATGAGTACTCCCTCTA 57.191 45.455 20.11 1.12 32.50 2.43
1431 5455 3.689872 TGGCTAATGAGTACTCCCTCT 57.310 47.619 20.11 4.60 32.50 3.69
1432 5456 4.965200 AATGGCTAATGAGTACTCCCTC 57.035 45.455 20.11 5.03 0.00 4.30
1433 5457 6.824958 TTAAATGGCTAATGAGTACTCCCT 57.175 37.500 20.11 9.47 0.00 4.20
1434 5458 6.369065 CGATTAAATGGCTAATGAGTACTCCC 59.631 42.308 20.11 13.43 0.00 4.30
1435 5459 6.929606 ACGATTAAATGGCTAATGAGTACTCC 59.070 38.462 20.11 4.76 0.00 3.85
1436 5460 7.948278 ACGATTAAATGGCTAATGAGTACTC 57.052 36.000 16.32 16.32 0.00 2.59
1475 5504 3.117046 GCTCAACGATTAGCCTCAGTAC 58.883 50.000 0.00 0.00 32.40 2.73
1478 5507 2.593346 AGCTCAACGATTAGCCTCAG 57.407 50.000 0.00 0.00 39.64 3.35
1483 5512 4.083802 ACAGACAAAAGCTCAACGATTAGC 60.084 41.667 0.00 0.00 39.08 3.09
1520 5549 5.339008 TGCTGACCGATAACTTAGTGAAT 57.661 39.130 0.00 0.00 0.00 2.57
1535 5972 1.376543 CTGGTGTGATGATGCTGACC 58.623 55.000 0.00 0.00 0.00 4.02
1537 5974 0.393402 GCCTGGTGTGATGATGCTGA 60.393 55.000 0.00 0.00 0.00 4.26
1558 5998 2.159503 CGTCGGCTAGCTATCCATGTAG 60.160 54.545 15.72 0.00 0.00 2.74
1559 5999 1.810755 CGTCGGCTAGCTATCCATGTA 59.189 52.381 15.72 0.00 0.00 2.29
1561 6001 0.734253 GCGTCGGCTAGCTATCCATG 60.734 60.000 15.72 7.45 35.83 3.66
1562 6002 1.587054 GCGTCGGCTAGCTATCCAT 59.413 57.895 15.72 0.00 35.83 3.41
1565 6005 2.126812 CCGCGTCGGCTAGCTATC 60.127 66.667 15.72 4.23 41.17 2.08
1583 6031 4.796290 GCAGAAGTAGCAACAGTAGACACA 60.796 45.833 0.00 0.00 0.00 3.72
1609 6062 0.238289 CGGAAAGCAGCAACGAACAT 59.762 50.000 0.00 0.00 0.00 2.71
1627 6084 0.740868 ATGGAGGTCGAACACATGCG 60.741 55.000 1.87 0.00 27.80 4.73
1871 7075 6.256975 TGATTCGGTAATTAAGTTGACATCGG 59.743 38.462 0.00 0.00 0.00 4.18
1959 7163 5.769162 TGAACACCACATCTTCATTTGATCA 59.231 36.000 0.00 0.00 0.00 2.92
1962 7166 5.183713 GGATGAACACCACATCTTCATTTGA 59.816 40.000 0.00 0.00 42.33 2.69
2008 7214 6.405731 GCTTTTGATAGTATCCCATGTTGCAA 60.406 38.462 7.69 0.00 0.00 4.08
2035 7243 6.740110 AGAGTTGCTCTTATATCGTTGTAGG 58.260 40.000 0.00 0.00 37.60 3.18
2044 7252 6.014012 GGGTCTCCTAGAGTTGCTCTTATAT 58.986 44.000 3.87 0.00 41.50 0.86
2047 7255 3.627747 GGGGTCTCCTAGAGTTGCTCTTA 60.628 52.174 3.87 0.00 41.50 2.10
2050 7258 1.116308 GGGGTCTCCTAGAGTTGCTC 58.884 60.000 0.00 0.00 0.00 4.26
2052 7260 1.817209 CGGGGTCTCCTAGAGTTGC 59.183 63.158 0.00 0.00 0.00 4.17
2054 7262 0.032017 ATGCGGGGTCTCCTAGAGTT 60.032 55.000 0.00 0.00 0.00 3.01
2056 7264 1.123928 AAATGCGGGGTCTCCTAGAG 58.876 55.000 0.00 0.00 0.00 2.43
2057 7265 1.209504 CAAAATGCGGGGTCTCCTAGA 59.790 52.381 0.00 0.00 0.00 2.43
2059 7267 0.393808 GCAAAATGCGGGGTCTCCTA 60.394 55.000 0.00 0.00 31.71 2.94
2062 7270 2.885113 GGCAAAATGCGGGGTCTC 59.115 61.111 0.00 0.00 46.21 3.36
2064 7272 3.059386 TCGGCAAAATGCGGGGTC 61.059 61.111 9.56 0.00 46.21 4.46
2066 7274 4.128388 GGTCGGCAAAATGCGGGG 62.128 66.667 9.56 0.00 46.21 5.73
2068 7276 4.474846 CGGGTCGGCAAAATGCGG 62.475 66.667 3.77 3.77 46.21 5.69
2069 7277 1.913451 TTACGGGTCGGCAAAATGCG 61.913 55.000 0.00 0.00 46.21 4.73
2070 7278 0.241481 TTTACGGGTCGGCAAAATGC 59.759 50.000 0.00 0.00 44.08 3.56
2073 7281 0.953003 CCTTTTACGGGTCGGCAAAA 59.047 50.000 0.00 0.00 0.00 2.44
2075 7283 1.302671 CCCTTTTACGGGTCGGCAA 60.303 57.895 0.00 0.00 39.51 4.52
2077 7285 2.437180 CCCCTTTTACGGGTCGGC 60.437 66.667 0.00 0.00 43.06 5.54
2083 7291 0.601057 CCTGCAAACCCCTTTTACGG 59.399 55.000 0.00 0.00 0.00 4.02
2084 7292 1.268625 GACCTGCAAACCCCTTTTACG 59.731 52.381 0.00 0.00 0.00 3.18
2086 7294 1.611519 CGACCTGCAAACCCCTTTTA 58.388 50.000 0.00 0.00 0.00 1.52
2087 7295 1.744320 GCGACCTGCAAACCCCTTTT 61.744 55.000 0.00 0.00 45.45 2.27
2088 7296 2.200337 GCGACCTGCAAACCCCTTT 61.200 57.895 0.00 0.00 45.45 3.11
2103 7311 3.069946 ATAACCGTCCCCGTGCGA 61.070 61.111 0.00 0.00 0.00 5.10
2104 7312 2.888534 CATAACCGTCCCCGTGCG 60.889 66.667 0.00 0.00 0.00 5.34
2106 7314 1.813753 CTGCATAACCGTCCCCGTG 60.814 63.158 0.00 0.00 0.00 4.94
2107 7315 2.582436 CTGCATAACCGTCCCCGT 59.418 61.111 0.00 0.00 0.00 5.28
2108 7316 2.203015 CCTGCATAACCGTCCCCG 60.203 66.667 0.00 0.00 0.00 5.73
2109 7317 2.516225 GCCTGCATAACCGTCCCC 60.516 66.667 0.00 0.00 0.00 4.81
2110 7318 2.516225 GGCCTGCATAACCGTCCC 60.516 66.667 0.00 0.00 0.00 4.46
2111 7319 2.862674 TTCGGCCTGCATAACCGTCC 62.863 60.000 18.23 0.00 46.92 4.79
2118 7326 0.100325 CGCAAATTTCGGCCTGCATA 59.900 50.000 12.34 0.00 34.39 3.14
2120 7328 2.257980 CGCAAATTTCGGCCTGCA 59.742 55.556 12.34 0.00 34.39 4.41
2121 7329 2.506881 CCGCAAATTTCGGCCTGC 60.507 61.111 13.57 0.89 40.46 4.85
2128 7336 1.801512 GTCTGCCGCCGCAAATTTC 60.802 57.895 0.47 0.00 46.66 2.17
2129 7337 0.958382 TAGTCTGCCGCCGCAAATTT 60.958 50.000 0.47 0.00 46.66 1.82
2130 7338 1.369091 CTAGTCTGCCGCCGCAAATT 61.369 55.000 0.47 0.00 46.66 1.82
2131 7339 1.815421 CTAGTCTGCCGCCGCAAAT 60.815 57.895 0.47 0.00 46.66 2.32
2132 7340 2.434185 CTAGTCTGCCGCCGCAAA 60.434 61.111 0.47 0.00 46.66 3.68
2133 7341 2.443260 TTTCTAGTCTGCCGCCGCAA 62.443 55.000 0.47 0.00 46.66 4.85
2135 7343 1.491505 GATTTCTAGTCTGCCGCCGC 61.492 60.000 0.00 0.00 0.00 6.53
2137 7345 1.491505 GCGATTTCTAGTCTGCCGCC 61.492 60.000 0.00 0.00 35.79 6.13
2138 7346 0.806102 TGCGATTTCTAGTCTGCCGC 60.806 55.000 0.00 0.00 41.28 6.53
2140 7348 2.742053 TGTTTGCGATTTCTAGTCTGCC 59.258 45.455 0.00 0.00 0.00 4.85
2143 7351 5.277828 GGTGTTTGTTTGCGATTTCTAGTCT 60.278 40.000 0.00 0.00 0.00 3.24
2144 7352 4.909880 GGTGTTTGTTTGCGATTTCTAGTC 59.090 41.667 0.00 0.00 0.00 2.59
2146 7354 5.108385 AGGTGTTTGTTTGCGATTTCTAG 57.892 39.130 0.00 0.00 0.00 2.43
2148 7356 5.508200 TTAGGTGTTTGTTTGCGATTTCT 57.492 34.783 0.00 0.00 0.00 2.52
2149 7357 6.763303 ATTTAGGTGTTTGTTTGCGATTTC 57.237 33.333 0.00 0.00 0.00 2.17
2150 7358 7.546778 AAATTTAGGTGTTTGTTTGCGATTT 57.453 28.000 0.00 0.00 0.00 2.17
2152 7360 8.649973 TTAAAATTTAGGTGTTTGTTTGCGAT 57.350 26.923 0.00 0.00 0.00 4.58
2153 7361 8.475331 TTTAAAATTTAGGTGTTTGTTTGCGA 57.525 26.923 0.00 0.00 0.00 5.10
2154 7362 9.543018 TTTTTAAAATTTAGGTGTTTGTTTGCG 57.457 25.926 0.55 0.00 0.00 4.85
2182 7496 0.865769 ATTTCTCGCGCGAAACAACT 59.134 45.000 33.99 16.89 35.88 3.16
2183 7497 1.670326 AATTTCTCGCGCGAAACAAC 58.330 45.000 33.99 0.00 35.88 3.32
2185 7499 2.392933 AAAATTTCTCGCGCGAAACA 57.607 40.000 33.99 15.35 35.88 2.83
2186 7500 3.240930 GCTTAAAATTTCTCGCGCGAAAC 60.241 43.478 33.99 12.44 35.88 2.78
2187 7501 2.906161 GCTTAAAATTTCTCGCGCGAAA 59.094 40.909 33.99 25.68 37.31 3.46
2188 7502 2.096169 TGCTTAAAATTTCTCGCGCGAA 60.096 40.909 33.99 20.11 0.00 4.70
2189 7503 1.461512 TGCTTAAAATTTCTCGCGCGA 59.538 42.857 32.60 32.60 0.00 5.87
2190 7504 1.877101 TGCTTAAAATTTCTCGCGCG 58.123 45.000 26.76 26.76 0.00 6.86
2191 7505 2.977169 TGTTGCTTAAAATTTCTCGCGC 59.023 40.909 0.00 0.00 0.00 6.86
2192 7506 3.058129 GCTGTTGCTTAAAATTTCTCGCG 59.942 43.478 0.00 0.00 36.03 5.87
2219 7533 2.727647 GTATGCGAGCGAGCTCCG 60.728 66.667 18.19 14.07 39.77 4.63
2220 7534 1.006805 ATGTATGCGAGCGAGCTCC 60.007 57.895 18.19 11.85 39.77 4.70
2221 7535 1.280886 CCATGTATGCGAGCGAGCTC 61.281 60.000 14.61 14.61 39.55 4.09
2223 7537 1.154205 AACCATGTATGCGAGCGAGC 61.154 55.000 0.00 0.00 37.71 5.03
2224 7538 0.855349 GAACCATGTATGCGAGCGAG 59.145 55.000 0.00 0.00 0.00 5.03
2226 7540 1.258982 GAAGAACCATGTATGCGAGCG 59.741 52.381 0.00 0.00 0.00 5.03
2227 7541 2.555199 AGAAGAACCATGTATGCGAGC 58.445 47.619 0.00 0.00 0.00 5.03
2229 7543 3.186909 CGAAGAAGAACCATGTATGCGA 58.813 45.455 0.00 0.00 0.00 5.10
2230 7544 2.285834 GCGAAGAAGAACCATGTATGCG 60.286 50.000 0.00 0.00 0.00 4.73
2231 7545 2.677836 TGCGAAGAAGAACCATGTATGC 59.322 45.455 0.00 0.00 0.00 3.14
2232 7546 6.603237 TTATGCGAAGAAGAACCATGTATG 57.397 37.500 0.00 0.00 0.00 2.39
2233 7547 8.902540 TTATTATGCGAAGAAGAACCATGTAT 57.097 30.769 0.00 0.00 0.00 2.29
2234 7548 7.985184 ACTTATTATGCGAAGAAGAACCATGTA 59.015 33.333 11.29 0.00 0.00 2.29
2236 7550 7.251704 ACTTATTATGCGAAGAAGAACCATG 57.748 36.000 11.29 0.00 0.00 3.66
2239 7553 7.303634 TGAACTTATTATGCGAAGAAGAACC 57.696 36.000 11.29 2.81 0.00 3.62
2240 7554 9.851043 GTATGAACTTATTATGCGAAGAAGAAC 57.149 33.333 11.29 6.31 0.00 3.01
2242 7556 9.031360 GTGTATGAACTTATTATGCGAAGAAGA 57.969 33.333 11.29 0.00 0.00 2.87
2243 7557 7.998767 CGTGTATGAACTTATTATGCGAAGAAG 59.001 37.037 4.50 4.50 0.00 2.85
2244 7558 7.516155 GCGTGTATGAACTTATTATGCGAAGAA 60.516 37.037 0.00 0.00 0.00 2.52
2246 7560 6.065153 GCGTGTATGAACTTATTATGCGAAG 58.935 40.000 0.00 0.00 0.00 3.79
2247 7561 5.050634 GGCGTGTATGAACTTATTATGCGAA 60.051 40.000 0.00 0.00 0.00 4.70
2248 7562 4.446385 GGCGTGTATGAACTTATTATGCGA 59.554 41.667 0.00 0.00 0.00 5.10
2249 7563 4.210328 TGGCGTGTATGAACTTATTATGCG 59.790 41.667 0.00 0.00 0.00 4.73
2250 7564 5.007234 TGTGGCGTGTATGAACTTATTATGC 59.993 40.000 0.00 0.00 0.00 3.14
2251 7565 6.597262 TGTGGCGTGTATGAACTTATTATG 57.403 37.500 0.00 0.00 0.00 1.90
2253 7567 7.266400 TGTATGTGGCGTGTATGAACTTATTA 58.734 34.615 0.00 0.00 0.00 0.98
2255 7569 5.666462 TGTATGTGGCGTGTATGAACTTAT 58.334 37.500 0.00 0.00 0.00 1.73
2256 7570 5.074584 TGTATGTGGCGTGTATGAACTTA 57.925 39.130 0.00 0.00 0.00 2.24
2259 7573 4.085261 CGTATGTATGTGGCGTGTATGAAC 60.085 45.833 0.00 0.00 0.00 3.18
2260 7574 4.045783 CGTATGTATGTGGCGTGTATGAA 58.954 43.478 0.00 0.00 0.00 2.57
2261 7575 3.067040 ACGTATGTATGTGGCGTGTATGA 59.933 43.478 0.00 0.00 34.36 2.15
2262 7576 3.377439 ACGTATGTATGTGGCGTGTATG 58.623 45.455 0.00 0.00 34.36 2.39
2263 7577 3.720949 ACGTATGTATGTGGCGTGTAT 57.279 42.857 0.00 0.00 34.36 2.29
2264 7578 3.876320 TCTACGTATGTATGTGGCGTGTA 59.124 43.478 0.00 0.00 37.05 2.90
2266 7580 3.297472 CTCTACGTATGTATGTGGCGTG 58.703 50.000 0.00 0.00 37.05 5.34
2267 7581 2.292569 CCTCTACGTATGTATGTGGCGT 59.707 50.000 0.00 0.00 39.23 5.68
2269 7583 4.317671 AACCTCTACGTATGTATGTGGC 57.682 45.455 0.00 0.00 0.00 5.01
2281 7595 7.012515 CCCTGTCTAGCATATATAACCTCTACG 59.987 44.444 0.00 0.00 0.00 3.51
2282 7596 7.201839 GCCCTGTCTAGCATATATAACCTCTAC 60.202 44.444 0.00 0.00 0.00 2.59
2283 7597 6.834451 GCCCTGTCTAGCATATATAACCTCTA 59.166 42.308 0.00 0.00 0.00 2.43
2286 8620 4.717280 GGCCCTGTCTAGCATATATAACCT 59.283 45.833 0.00 0.00 0.00 3.50
2291 8625 3.954904 CGTAGGCCCTGTCTAGCATATAT 59.045 47.826 0.00 0.00 0.00 0.86
2292 8626 3.353557 CGTAGGCCCTGTCTAGCATATA 58.646 50.000 0.00 0.00 0.00 0.86
2293 8627 2.171840 CGTAGGCCCTGTCTAGCATAT 58.828 52.381 0.00 0.00 0.00 1.78
2298 8632 0.953003 GTAGCGTAGGCCCTGTCTAG 59.047 60.000 0.00 0.00 41.24 2.43
2299 8633 0.549950 AGTAGCGTAGGCCCTGTCTA 59.450 55.000 0.00 0.00 41.24 2.59
2301 8635 1.437986 CAGTAGCGTAGGCCCTGTC 59.562 63.158 0.00 0.00 41.24 3.51
2302 8636 2.722201 GCAGTAGCGTAGGCCCTGT 61.722 63.158 19.66 0.48 39.54 4.00
2303 8637 2.032860 ATGCAGTAGCGTAGGCCCTG 62.033 60.000 16.29 16.29 46.23 4.45
2314 8648 3.902261 TTTGTTGCAGTGATGCAGTAG 57.098 42.857 2.87 0.00 46.21 2.57
2317 8651 4.052608 TCAATTTTGTTGCAGTGATGCAG 58.947 39.130 2.87 0.00 46.21 4.41
2318 8652 4.052608 CTCAATTTTGTTGCAGTGATGCA 58.947 39.130 0.00 0.00 43.81 3.96
2319 8653 3.120786 GCTCAATTTTGTTGCAGTGATGC 60.121 43.478 0.00 0.00 0.00 3.91
2320 8654 4.304110 AGCTCAATTTTGTTGCAGTGATG 58.696 39.130 0.00 0.00 33.67 3.07
2321 8655 4.038282 TGAGCTCAATTTTGTTGCAGTGAT 59.962 37.500 15.67 0.00 33.67 3.06
2323 8657 3.488310 GTGAGCTCAATTTTGTTGCAGTG 59.512 43.478 20.19 0.00 33.67 3.66
2324 8658 3.491447 GGTGAGCTCAATTTTGTTGCAGT 60.491 43.478 20.19 0.00 33.67 4.40
2325 8659 3.054878 GGTGAGCTCAATTTTGTTGCAG 58.945 45.455 20.19 0.00 33.67 4.41
2326 8660 2.429971 TGGTGAGCTCAATTTTGTTGCA 59.570 40.909 20.19 0.00 33.67 4.08
2327 8661 3.054878 CTGGTGAGCTCAATTTTGTTGC 58.945 45.455 20.19 1.96 0.00 4.17
2328 8662 4.543692 CTCTGGTGAGCTCAATTTTGTTG 58.456 43.478 20.19 3.42 33.12 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.