Multiple sequence alignment - TraesCS2B01G500900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G500900 chr2B 100.000 2475 0 0 1 2475 695993985 695991511 0.000000e+00 4571.0
1 TraesCS2B01G500900 chr2B 94.578 996 29 4 758 1728 695928754 695927759 0.000000e+00 1517.0
2 TraesCS2B01G500900 chr2B 94.578 996 29 4 758 1728 695964757 695963762 0.000000e+00 1517.0
3 TraesCS2B01G500900 chr2B 90.940 596 37 9 799 1382 696081399 696080809 0.000000e+00 785.0
4 TraesCS2B01G500900 chr2B 85.897 468 31 9 1513 1957 696074957 696074502 1.340000e-127 466.0
5 TraesCS2B01G500900 chr2B 82.558 258 24 7 1710 1957 695925808 695925562 8.970000e-50 207.0
6 TraesCS2B01G500900 chr2B 86.559 186 23 2 1088 1273 695920228 695920045 1.160000e-48 204.0
7 TraesCS2B01G500900 chr2B 82.239 259 24 7 1710 1957 695962177 695961930 1.160000e-48 204.0
8 TraesCS2B01G500900 chr2D 90.705 1248 73 16 880 2095 579065412 579064176 0.000000e+00 1622.0
9 TraesCS2B01G500900 chr2D 89.724 905 61 24 797 1673 579060798 579059898 0.000000e+00 1127.0
10 TraesCS2B01G500900 chr2D 84.091 660 80 19 1088 1730 579001115 579000464 4.520000e-172 614.0
11 TraesCS2B01G500900 chr2D 90.455 220 21 0 2091 2310 140368914 140368695 8.660000e-75 291.0
12 TraesCS2B01G500900 chr2D 90.000 220 22 0 2091 2310 254089821 254090040 4.030000e-73 285.0
13 TraesCS2B01G500900 chr2D 90.000 220 22 0 2090 2309 393072489 393072270 4.030000e-73 285.0
14 TraesCS2B01G500900 chr2D 79.241 395 30 20 315 657 45873709 45874103 6.890000e-56 228.0
15 TraesCS2B01G500900 chr2D 90.751 173 12 1 2307 2475 579064181 579064009 6.890000e-56 228.0
16 TraesCS2B01G500900 chr2D 88.679 106 10 2 1991 2095 579004264 579004160 7.180000e-26 128.0
17 TraesCS2B01G500900 chr3A 98.681 758 8 2 1 757 726766402 726765646 0.000000e+00 1343.0
18 TraesCS2B01G500900 chr3A 88.991 218 19 2 4 221 701587110 701586898 5.250000e-67 265.0
19 TraesCS2B01G500900 chr3A 93.878 49 3 0 706 754 32600913 32600961 9.490000e-10 75.0
20 TraesCS2B01G500900 chr2A 85.387 1177 84 34 761 1875 716545057 716543907 0.000000e+00 1140.0
21 TraesCS2B01G500900 chr2A 90.011 891 62 13 797 1673 716549886 716549009 0.000000e+00 1127.0
22 TraesCS2B01G500900 chr2A 85.827 254 23 10 1406 1650 716522902 716522653 8.780000e-65 257.0
23 TraesCS2B01G500900 chr2A 85.043 234 22 6 1681 1907 716548919 716548692 2.480000e-55 226.0
24 TraesCS2B01G500900 chr2A 93.220 59 4 0 2037 2095 716543908 716543850 1.220000e-13 87.9
25 TraesCS2B01G500900 chr7B 88.818 313 25 4 3 309 449478051 449478359 2.320000e-100 375.0
26 TraesCS2B01G500900 chr7B 88.525 183 16 2 327 504 449478557 449478739 1.490000e-52 217.0
27 TraesCS2B01G500900 chr7B 88.800 125 14 0 502 626 449483253 449483377 1.190000e-33 154.0
28 TraesCS2B01G500900 chr7B 84.906 53 8 0 706 758 128056656 128056708 1.000000e-03 54.7
29 TraesCS2B01G500900 chr7A 89.855 276 23 4 485 757 553783572 553783299 1.410000e-92 350.0
30 TraesCS2B01G500900 chrUn 92.694 219 14 2 2091 2309 295699382 295699598 5.140000e-82 315.0
31 TraesCS2B01G500900 chr7D 92.694 219 14 2 2091 2309 619586141 619585925 5.140000e-82 315.0
32 TraesCS2B01G500900 chr7D 87.156 218 24 2 4 221 235663457 235663670 6.840000e-61 244.0
33 TraesCS2B01G500900 chr5D 90.455 220 21 0 2091 2310 181507036 181507255 8.660000e-75 291.0
34 TraesCS2B01G500900 chr5D 90.000 220 22 0 2091 2310 162582253 162582472 4.030000e-73 285.0
35 TraesCS2B01G500900 chr5A 90.455 220 21 0 2091 2310 309853232 309853013 8.660000e-75 291.0
36 TraesCS2B01G500900 chr5A 89.831 59 6 0 706 764 613898137 613898195 2.640000e-10 76.8
37 TraesCS2B01G500900 chr5A 87.097 62 8 0 696 757 650241002 650240941 1.230000e-08 71.3
38 TraesCS2B01G500900 chr5B 90.411 219 21 0 2091 2309 367884858 367885076 3.110000e-74 289.0
39 TraesCS2B01G500900 chr5B 88.532 218 21 2 4 221 596084567 596084354 6.790000e-66 261.0
40 TraesCS2B01G500900 chr5B 87.156 218 24 1 4 221 578589095 578588882 6.840000e-61 244.0
41 TraesCS2B01G500900 chr3D 86.722 241 22 5 4 238 13591644 13591408 2.440000e-65 259.0
42 TraesCS2B01G500900 chr6B 88.406 207 20 1 5 211 678112555 678112353 1.900000e-61 246.0
43 TraesCS2B01G500900 chr3B 87.156 218 24 1 4 221 760317302 760317515 6.840000e-61 244.0
44 TraesCS2B01G500900 chr3B 84.211 76 11 1 678 752 406457783 406457708 3.410000e-09 73.1
45 TraesCS2B01G500900 chr1A 92.308 52 4 0 706 757 592569559 592569508 9.490000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G500900 chr2B 695991511 695993985 2474 True 4571.000000 4571 100.000000 1 2475 1 chr2B.!!$R2 2474
1 TraesCS2B01G500900 chr2B 695925562 695928754 3192 True 862.000000 1517 88.568000 758 1957 2 chr2B.!!$R5 1199
2 TraesCS2B01G500900 chr2B 695961930 695964757 2827 True 860.500000 1517 88.408500 758 1957 2 chr2B.!!$R6 1199
3 TraesCS2B01G500900 chr2B 696080809 696081399 590 True 785.000000 785 90.940000 799 1382 1 chr2B.!!$R4 583
4 TraesCS2B01G500900 chr2D 579059898 579065412 5514 True 992.333333 1622 90.393333 797 2475 3 chr2D.!!$R4 1678
5 TraesCS2B01G500900 chr2D 579000464 579004264 3800 True 371.000000 614 86.385000 1088 2095 2 chr2D.!!$R3 1007
6 TraesCS2B01G500900 chr3A 726765646 726766402 756 True 1343.000000 1343 98.681000 1 757 1 chr3A.!!$R2 756
7 TraesCS2B01G500900 chr2A 716543850 716549886 6036 True 645.225000 1140 88.415250 761 2095 4 chr2A.!!$R2 1334
8 TraesCS2B01G500900 chr7B 449478051 449478739 688 False 296.000000 375 88.671500 3 504 2 chr7B.!!$F3 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 6007 0.336392 TCTCTGCTCCTTCCCAGCTA 59.664 55.0 0.0 0.0 37.79 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2118 13914 0.245266 TCAACCTAGAACGATGCGCA 59.755 50.0 14.96 14.96 0.0 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
585 777 3.547746 GCCCATTAATTAGTCCCGAACA 58.452 45.455 0.00 0.00 0.00 3.18
789 5810 1.945394 CACGTCCCACTAGCTACGTAT 59.055 52.381 9.57 0.00 45.95 3.06
963 6007 0.336392 TCTCTGCTCCTTCCCAGCTA 59.664 55.000 0.00 0.00 37.79 3.32
1125 10898 2.125713 CCGTGCATGTCCTACGCA 60.126 61.111 4.96 0.00 36.56 5.24
1549 11336 0.667487 GTTGCTGCTCTCTGCGTGTA 60.667 55.000 0.00 0.00 46.63 2.90
1650 11437 8.839947 TCATCAATAAAATAATGTGTTGAGCG 57.160 30.769 0.00 0.00 0.00 5.03
1651 11439 7.914871 TCATCAATAAAATAATGTGTTGAGCGG 59.085 33.333 0.00 0.00 0.00 5.52
1712 11520 1.636988 GCATGTTGCTGCTGGAAATC 58.363 50.000 0.00 0.00 40.96 2.17
1725 13502 4.022935 TGCTGGAAATCTTAGCAAGTGTTG 60.023 41.667 9.38 0.00 43.77 3.33
1782 13566 8.091449 TGTAATTTTGTAACTAAATGCAAGGGG 58.909 33.333 0.00 0.00 0.00 4.79
1783 13567 5.476091 TTTTGTAACTAAATGCAAGGGGG 57.524 39.130 0.00 0.00 0.00 5.40
1801 13591 2.018515 GGGGAAAACGTGTCAACTTGA 58.981 47.619 0.00 0.00 0.00 3.02
1803 13593 3.816523 GGGGAAAACGTGTCAACTTGATA 59.183 43.478 0.00 0.00 0.00 2.15
1808 13598 7.136119 GGAAAACGTGTCAACTTGATAAATCA 58.864 34.615 0.00 0.00 34.44 2.57
1829 13619 2.906354 AGCGATGATTTTCTAACCGCT 58.094 42.857 0.00 0.00 45.35 5.52
1830 13620 2.974165 GCGATGATTTTCTAACCGCTG 58.026 47.619 0.00 0.00 38.36 5.18
1889 13682 9.529325 CTTATACGAGACCAAATAAAGATGTGA 57.471 33.333 0.00 0.00 0.00 3.58
1892 13685 6.173339 ACGAGACCAAATAAAGATGTGATGT 58.827 36.000 0.00 0.00 0.00 3.06
1893 13686 6.655003 ACGAGACCAAATAAAGATGTGATGTT 59.345 34.615 0.00 0.00 0.00 2.71
1894 13687 7.148407 ACGAGACCAAATAAAGATGTGATGTTC 60.148 37.037 0.00 0.00 0.00 3.18
1895 13688 7.148423 CGAGACCAAATAAAGATGTGATGTTCA 60.148 37.037 0.00 0.00 0.00 3.18
1896 13689 8.585471 AGACCAAATAAAGATGTGATGTTCAT 57.415 30.769 0.00 0.00 0.00 2.57
1897 13690 8.680903 AGACCAAATAAAGATGTGATGTTCATC 58.319 33.333 5.91 5.91 41.11 2.92
1898 13691 7.775120 ACCAAATAAAGATGTGATGTTCATCC 58.225 34.615 9.83 3.24 41.56 3.51
1899 13692 7.147846 ACCAAATAAAGATGTGATGTTCATCCC 60.148 37.037 9.83 0.00 41.56 3.85
1900 13693 6.966534 AATAAAGATGTGATGTTCATCCCC 57.033 37.500 9.83 2.49 41.56 4.81
1935 13731 1.972588 ATGGTTAGGCTCCCAAGAGT 58.027 50.000 9.60 0.00 42.59 3.24
1957 13753 8.063770 AGAGTGGATATGGAAAGGAAAATTGAT 58.936 33.333 0.00 0.00 0.00 2.57
1958 13754 8.015185 AGTGGATATGGAAAGGAAAATTGATG 57.985 34.615 0.00 0.00 0.00 3.07
1959 13755 7.840716 AGTGGATATGGAAAGGAAAATTGATGA 59.159 33.333 0.00 0.00 0.00 2.92
1960 13756 7.922811 GTGGATATGGAAAGGAAAATTGATGAC 59.077 37.037 0.00 0.00 0.00 3.06
1961 13757 7.618907 TGGATATGGAAAGGAAAATTGATGACA 59.381 33.333 0.00 0.00 0.00 3.58
1962 13758 8.645110 GGATATGGAAAGGAAAATTGATGACAT 58.355 33.333 0.00 0.00 0.00 3.06
1963 13759 9.688592 GATATGGAAAGGAAAATTGATGACATC 57.311 33.333 8.59 8.59 0.00 3.06
1964 13760 7.729124 ATGGAAAGGAAAATTGATGACATCT 57.271 32.000 16.25 0.00 0.00 2.90
1965 13761 7.161773 TGGAAAGGAAAATTGATGACATCTC 57.838 36.000 16.25 5.20 0.00 2.75
1966 13762 6.720748 TGGAAAGGAAAATTGATGACATCTCA 59.279 34.615 16.25 3.91 0.00 3.27
1967 13763 7.031975 GGAAAGGAAAATTGATGACATCTCAC 58.968 38.462 16.25 2.95 0.00 3.51
1968 13764 7.094032 GGAAAGGAAAATTGATGACATCTCACT 60.094 37.037 16.25 3.06 0.00 3.41
1969 13765 7.771927 AAGGAAAATTGATGACATCTCACTT 57.228 32.000 16.25 8.14 0.00 3.16
1970 13766 8.868522 AAGGAAAATTGATGACATCTCACTTA 57.131 30.769 16.25 0.00 0.00 2.24
1971 13767 8.868522 AGGAAAATTGATGACATCTCACTTAA 57.131 30.769 16.25 1.90 0.00 1.85
1972 13768 9.300681 AGGAAAATTGATGACATCTCACTTAAA 57.699 29.630 16.25 1.21 0.00 1.52
1973 13769 9.912634 GGAAAATTGATGACATCTCACTTAAAA 57.087 29.630 16.25 0.51 0.00 1.52
1978 13774 9.903682 ATTGATGACATCTCACTTAAAACAAAG 57.096 29.630 16.25 0.00 0.00 2.77
1979 13775 7.874940 TGATGACATCTCACTTAAAACAAAGG 58.125 34.615 16.25 0.00 0.00 3.11
1980 13776 6.633500 TGACATCTCACTTAAAACAAAGGG 57.367 37.500 0.00 0.00 0.00 3.95
1981 13777 6.361433 TGACATCTCACTTAAAACAAAGGGA 58.639 36.000 0.00 0.00 36.55 4.20
1982 13778 6.831353 TGACATCTCACTTAAAACAAAGGGAA 59.169 34.615 0.00 0.00 38.40 3.97
1983 13779 7.340743 TGACATCTCACTTAAAACAAAGGGAAA 59.659 33.333 0.00 0.00 38.40 3.13
1984 13780 7.489160 ACATCTCACTTAAAACAAAGGGAAAC 58.511 34.615 0.00 0.00 38.40 2.78
1985 13781 7.123547 ACATCTCACTTAAAACAAAGGGAAACA 59.876 33.333 0.00 0.00 38.40 2.83
1986 13782 7.469537 TCTCACTTAAAACAAAGGGAAACAA 57.530 32.000 0.00 0.00 38.40 2.83
1987 13783 8.073467 TCTCACTTAAAACAAAGGGAAACAAT 57.927 30.769 0.00 0.00 38.40 2.71
1988 13784 7.978975 TCTCACTTAAAACAAAGGGAAACAATG 59.021 33.333 0.00 0.00 38.40 2.82
1989 13785 7.044798 TCACTTAAAACAAAGGGAAACAATGG 58.955 34.615 0.00 0.00 35.96 3.16
1990 13786 7.044798 CACTTAAAACAAAGGGAAACAATGGA 58.955 34.615 0.00 0.00 31.06 3.41
1991 13787 7.224557 CACTTAAAACAAAGGGAAACAATGGAG 59.775 37.037 0.00 0.00 31.06 3.86
1992 13788 5.948742 AAAACAAAGGGAAACAATGGAGA 57.051 34.783 0.00 0.00 0.00 3.71
1993 13789 5.948742 AAACAAAGGGAAACAATGGAGAA 57.051 34.783 0.00 0.00 0.00 2.87
1994 13790 5.948742 AACAAAGGGAAACAATGGAGAAA 57.051 34.783 0.00 0.00 0.00 2.52
1995 13791 5.948742 ACAAAGGGAAACAATGGAGAAAA 57.051 34.783 0.00 0.00 0.00 2.29
1996 13792 5.917462 ACAAAGGGAAACAATGGAGAAAAG 58.083 37.500 0.00 0.00 0.00 2.27
1997 13793 5.660864 ACAAAGGGAAACAATGGAGAAAAGA 59.339 36.000 0.00 0.00 0.00 2.52
1998 13794 6.183360 ACAAAGGGAAACAATGGAGAAAAGAG 60.183 38.462 0.00 0.00 0.00 2.85
1999 13795 5.324832 AGGGAAACAATGGAGAAAAGAGA 57.675 39.130 0.00 0.00 0.00 3.10
2000 13796 5.073428 AGGGAAACAATGGAGAAAAGAGAC 58.927 41.667 0.00 0.00 0.00 3.36
2001 13797 5.073428 GGGAAACAATGGAGAAAAGAGACT 58.927 41.667 0.00 0.00 0.00 3.24
2002 13798 5.536538 GGGAAACAATGGAGAAAAGAGACTT 59.463 40.000 0.00 0.00 0.00 3.01
2003 13799 6.442112 GGAAACAATGGAGAAAAGAGACTTG 58.558 40.000 0.00 0.00 0.00 3.16
2004 13800 6.039829 GGAAACAATGGAGAAAAGAGACTTGT 59.960 38.462 0.00 0.00 0.00 3.16
2005 13801 7.410120 AAACAATGGAGAAAAGAGACTTGTT 57.590 32.000 0.00 0.00 37.22 2.83
2006 13802 6.625873 ACAATGGAGAAAAGAGACTTGTTC 57.374 37.500 0.00 0.00 0.00 3.18
2007 13803 6.360618 ACAATGGAGAAAAGAGACTTGTTCT 58.639 36.000 0.00 0.00 37.23 3.01
2008 13804 6.261826 ACAATGGAGAAAAGAGACTTGTTCTG 59.738 38.462 0.00 0.00 33.22 3.02
2009 13805 4.708177 TGGAGAAAAGAGACTTGTTCTGG 58.292 43.478 0.00 0.00 33.22 3.86
2010 13806 4.068599 GGAGAAAAGAGACTTGTTCTGGG 58.931 47.826 0.00 0.00 33.22 4.45
2011 13807 4.445019 GGAGAAAAGAGACTTGTTCTGGGT 60.445 45.833 0.00 0.00 33.22 4.51
2012 13808 5.117406 AGAAAAGAGACTTGTTCTGGGTT 57.883 39.130 0.00 0.00 33.22 4.11
2013 13809 4.884164 AGAAAAGAGACTTGTTCTGGGTTG 59.116 41.667 0.00 0.00 33.22 3.77
2014 13810 3.933861 AAGAGACTTGTTCTGGGTTGT 57.066 42.857 0.00 0.00 33.22 3.32
2015 13811 3.199880 AGAGACTTGTTCTGGGTTGTG 57.800 47.619 0.00 0.00 33.22 3.33
2016 13812 2.771943 AGAGACTTGTTCTGGGTTGTGA 59.228 45.455 0.00 0.00 33.22 3.58
2017 13813 3.392616 AGAGACTTGTTCTGGGTTGTGAT 59.607 43.478 0.00 0.00 33.22 3.06
2018 13814 3.480470 AGACTTGTTCTGGGTTGTGATG 58.520 45.455 0.00 0.00 31.12 3.07
2019 13815 3.117888 AGACTTGTTCTGGGTTGTGATGT 60.118 43.478 0.00 0.00 31.12 3.06
2020 13816 3.631250 ACTTGTTCTGGGTTGTGATGTT 58.369 40.909 0.00 0.00 0.00 2.71
2021 13817 4.787551 ACTTGTTCTGGGTTGTGATGTTA 58.212 39.130 0.00 0.00 0.00 2.41
2022 13818 5.197451 ACTTGTTCTGGGTTGTGATGTTAA 58.803 37.500 0.00 0.00 0.00 2.01
2023 13819 5.067283 ACTTGTTCTGGGTTGTGATGTTAAC 59.933 40.000 0.00 0.00 0.00 2.01
2024 13820 3.886505 TGTTCTGGGTTGTGATGTTAACC 59.113 43.478 2.48 0.00 44.38 2.85
2025 13821 3.866703 TCTGGGTTGTGATGTTAACCA 57.133 42.857 2.48 0.00 46.39 3.67
2026 13822 4.380843 TCTGGGTTGTGATGTTAACCAT 57.619 40.909 2.48 0.00 46.39 3.55
2027 13823 4.331968 TCTGGGTTGTGATGTTAACCATC 58.668 43.478 2.48 7.05 46.39 3.51
2049 13845 7.176865 CCATCGGGATCTTACTACTTCTCATAA 59.823 40.741 0.00 0.00 35.59 1.90
2085 13881 2.029918 GGGTGAAAATTGTGCAGAGGAC 60.030 50.000 0.00 0.00 0.00 3.85
2092 13888 5.376854 AAATTGTGCAGAGGACAATGTAC 57.623 39.130 15.84 0.00 42.04 2.90
2095 13891 1.993370 GTGCAGAGGACAATGTACGTC 59.007 52.381 0.00 0.00 0.00 4.34
2101 13897 2.662150 GACAATGTACGTCCTCCGC 58.338 57.895 0.00 0.00 41.42 5.54
2102 13898 1.138047 GACAATGTACGTCCTCCGCG 61.138 60.000 0.00 0.00 41.42 6.46
2103 13899 1.153901 CAATGTACGTCCTCCGCGT 60.154 57.895 4.92 0.00 45.11 6.01
2104 13900 1.138047 CAATGTACGTCCTCCGCGTC 61.138 60.000 4.92 0.00 42.85 5.19
2105 13901 2.588146 AATGTACGTCCTCCGCGTCG 62.588 60.000 4.92 4.40 42.85 5.12
2116 13912 1.929376 CCGCGTCGGTTTATAAGGC 59.071 57.895 4.92 0.00 42.73 4.35
2117 13913 0.806884 CCGCGTCGGTTTATAAGGCA 60.807 55.000 4.92 0.00 42.73 4.75
2118 13914 1.214367 CGCGTCGGTTTATAAGGCAT 58.786 50.000 0.00 0.00 0.00 4.40
2119 13915 1.070843 CGCGTCGGTTTATAAGGCATG 60.071 52.381 0.00 0.00 0.00 4.06
2120 13916 1.333791 GCGTCGGTTTATAAGGCATGC 60.334 52.381 9.90 9.90 0.00 4.06
2121 13917 1.070843 CGTCGGTTTATAAGGCATGCG 60.071 52.381 12.44 0.00 0.00 4.73
2122 13918 0.941542 TCGGTTTATAAGGCATGCGC 59.058 50.000 12.44 0.00 37.44 6.09
2123 13919 0.660488 CGGTTTATAAGGCATGCGCA 59.340 50.000 14.96 14.96 41.24 6.09
2124 13920 1.266718 CGGTTTATAAGGCATGCGCAT 59.733 47.619 19.28 19.28 41.24 4.73
2125 13921 2.665519 CGGTTTATAAGGCATGCGCATC 60.666 50.000 22.51 15.11 41.24 3.91
2126 13922 2.574322 GTTTATAAGGCATGCGCATCG 58.426 47.619 22.51 16.93 41.24 3.84
2127 13923 1.877637 TTATAAGGCATGCGCATCGT 58.122 45.000 22.51 13.90 41.24 3.73
2128 13924 1.877637 TATAAGGCATGCGCATCGTT 58.122 45.000 22.51 22.21 41.24 3.85
2129 13925 0.588252 ATAAGGCATGCGCATCGTTC 59.412 50.000 22.51 10.13 41.24 3.95
2130 13926 0.461870 TAAGGCATGCGCATCGTTCT 60.462 50.000 22.51 12.32 41.24 3.01
2131 13927 0.461870 AAGGCATGCGCATCGTTCTA 60.462 50.000 22.51 0.00 41.24 2.10
2132 13928 0.877649 AGGCATGCGCATCGTTCTAG 60.878 55.000 22.51 8.71 41.24 2.43
2133 13929 1.566563 GCATGCGCATCGTTCTAGG 59.433 57.895 22.51 7.89 38.36 3.02
2134 13930 1.154205 GCATGCGCATCGTTCTAGGT 61.154 55.000 22.51 0.00 38.36 3.08
2135 13931 1.290203 CATGCGCATCGTTCTAGGTT 58.710 50.000 22.51 0.00 0.00 3.50
2136 13932 1.004610 CATGCGCATCGTTCTAGGTTG 60.005 52.381 22.51 1.77 0.00 3.77
2137 13933 0.245266 TGCGCATCGTTCTAGGTTGA 59.755 50.000 5.66 0.00 0.00 3.18
2138 13934 0.645868 GCGCATCGTTCTAGGTTGAC 59.354 55.000 0.30 0.00 0.00 3.18
2139 13935 1.990799 CGCATCGTTCTAGGTTGACA 58.009 50.000 0.00 0.00 0.00 3.58
2140 13936 2.333926 CGCATCGTTCTAGGTTGACAA 58.666 47.619 0.00 0.00 0.00 3.18
2141 13937 2.930040 CGCATCGTTCTAGGTTGACAAT 59.070 45.455 0.00 0.00 0.00 2.71
2142 13938 3.370978 CGCATCGTTCTAGGTTGACAATT 59.629 43.478 0.00 0.00 0.00 2.32
2143 13939 4.142902 CGCATCGTTCTAGGTTGACAATTT 60.143 41.667 0.00 0.00 0.00 1.82
2144 13940 5.062934 CGCATCGTTCTAGGTTGACAATTTA 59.937 40.000 0.00 0.00 0.00 1.40
2145 13941 6.478588 GCATCGTTCTAGGTTGACAATTTAG 58.521 40.000 0.00 0.00 0.00 1.85
2146 13942 6.478588 CATCGTTCTAGGTTGACAATTTAGC 58.521 40.000 0.00 0.00 0.00 3.09
2147 13943 5.790593 TCGTTCTAGGTTGACAATTTAGCT 58.209 37.500 0.00 0.00 0.00 3.32
2148 13944 6.927416 TCGTTCTAGGTTGACAATTTAGCTA 58.073 36.000 0.00 0.00 0.00 3.32
2149 13945 7.380536 TCGTTCTAGGTTGACAATTTAGCTAA 58.619 34.615 0.86 0.86 0.00 3.09
2150 13946 7.330208 TCGTTCTAGGTTGACAATTTAGCTAAC 59.670 37.037 5.45 0.00 0.00 2.34
2151 13947 7.331193 CGTTCTAGGTTGACAATTTAGCTAACT 59.669 37.037 5.45 0.00 0.00 2.24
2152 13948 9.649167 GTTCTAGGTTGACAATTTAGCTAACTA 57.351 33.333 5.45 0.49 0.00 2.24
2201 13997 9.744468 AAATATATTTTTGGAAACTACATCCGC 57.256 29.630 4.81 0.00 39.98 5.54
2202 13998 8.691661 ATATATTTTTGGAAACTACATCCGCT 57.308 30.769 0.00 0.00 39.98 5.52
2203 13999 5.722021 ATTTTTGGAAACTACATCCGCTT 57.278 34.783 0.00 0.00 39.98 4.68
2204 14000 6.827586 ATTTTTGGAAACTACATCCGCTTA 57.172 33.333 0.00 0.00 39.98 3.09
2205 14001 6.636562 TTTTTGGAAACTACATCCGCTTAA 57.363 33.333 0.00 0.00 39.98 1.85
2206 14002 5.873179 TTTGGAAACTACATCCGCTTAAG 57.127 39.130 0.00 0.00 39.98 1.85
2207 14003 4.811969 TGGAAACTACATCCGCTTAAGA 57.188 40.909 6.67 0.00 39.98 2.10
2208 14004 5.155278 TGGAAACTACATCCGCTTAAGAA 57.845 39.130 6.67 0.00 39.98 2.52
2209 14005 5.741011 TGGAAACTACATCCGCTTAAGAAT 58.259 37.500 6.67 0.00 39.98 2.40
2210 14006 5.815740 TGGAAACTACATCCGCTTAAGAATC 59.184 40.000 6.67 0.00 39.98 2.52
2211 14007 5.236695 GGAAACTACATCCGCTTAAGAATCC 59.763 44.000 6.67 0.00 0.00 3.01
2212 14008 5.353394 AACTACATCCGCTTAAGAATCCA 57.647 39.130 6.67 0.00 0.00 3.41
2213 14009 5.353394 ACTACATCCGCTTAAGAATCCAA 57.647 39.130 6.67 0.00 0.00 3.53
2214 14010 5.930135 ACTACATCCGCTTAAGAATCCAAT 58.070 37.500 6.67 0.00 0.00 3.16
2215 14011 5.760253 ACTACATCCGCTTAAGAATCCAATG 59.240 40.000 6.67 3.37 0.00 2.82
2216 14012 4.780815 ACATCCGCTTAAGAATCCAATGA 58.219 39.130 6.67 0.00 0.00 2.57
2217 14013 5.380043 ACATCCGCTTAAGAATCCAATGAT 58.620 37.500 6.67 0.00 0.00 2.45
2218 14014 5.240183 ACATCCGCTTAAGAATCCAATGATG 59.760 40.000 6.67 7.75 33.80 3.07
2219 14015 4.780815 TCCGCTTAAGAATCCAATGATGT 58.219 39.130 6.67 0.00 0.00 3.06
2220 14016 5.924356 TCCGCTTAAGAATCCAATGATGTA 58.076 37.500 6.67 0.00 0.00 2.29
2221 14017 5.758296 TCCGCTTAAGAATCCAATGATGTAC 59.242 40.000 6.67 0.00 0.00 2.90
2222 14018 5.760253 CCGCTTAAGAATCCAATGATGTACT 59.240 40.000 6.67 0.00 0.00 2.73
2223 14019 6.260936 CCGCTTAAGAATCCAATGATGTACTT 59.739 38.462 6.67 0.00 0.00 2.24
2224 14020 7.201732 CCGCTTAAGAATCCAATGATGTACTTT 60.202 37.037 6.67 0.00 0.00 2.66
2225 14021 8.184192 CGCTTAAGAATCCAATGATGTACTTTT 58.816 33.333 6.67 0.00 0.00 2.27
2226 14022 9.294030 GCTTAAGAATCCAATGATGTACTTTTG 57.706 33.333 6.67 0.00 0.00 2.44
2227 14023 9.793252 CTTAAGAATCCAATGATGTACTTTTGG 57.207 33.333 0.00 6.05 0.00 3.28
2228 14024 7.781324 AAGAATCCAATGATGTACTTTTGGT 57.219 32.000 10.44 0.00 0.00 3.67
2229 14025 7.161773 AGAATCCAATGATGTACTTTTGGTG 57.838 36.000 10.44 0.00 0.00 4.17
2230 14026 6.947733 AGAATCCAATGATGTACTTTTGGTGA 59.052 34.615 10.44 0.00 0.00 4.02
2231 14027 5.957842 TCCAATGATGTACTTTTGGTGAC 57.042 39.130 10.44 0.00 0.00 3.67
2232 14028 5.380900 TCCAATGATGTACTTTTGGTGACA 58.619 37.500 10.44 0.00 39.83 3.58
2233 14029 6.009589 TCCAATGATGTACTTTTGGTGACAT 58.990 36.000 10.44 0.00 42.32 3.06
2234 14030 7.171653 TCCAATGATGTACTTTTGGTGACATA 58.828 34.615 10.44 0.00 42.32 2.29
2235 14031 7.833682 TCCAATGATGTACTTTTGGTGACATAT 59.166 33.333 10.44 0.00 42.32 1.78
2236 14032 9.119418 CCAATGATGTACTTTTGGTGACATATA 57.881 33.333 0.00 0.00 42.32 0.86
2239 14035 9.905713 ATGATGTACTTTTGGTGACATATAACT 57.094 29.630 0.00 0.00 42.32 2.24
2240 14036 9.378551 TGATGTACTTTTGGTGACATATAACTC 57.621 33.333 0.00 0.00 42.32 3.01
2241 14037 9.378551 GATGTACTTTTGGTGACATATAACTCA 57.621 33.333 0.00 0.00 42.32 3.41
2242 14038 9.905713 ATGTACTTTTGGTGACATATAACTCAT 57.094 29.630 0.00 0.00 42.32 2.90
2276 14072 6.561614 GTCAAATCGATGACCTAGAACTACA 58.438 40.000 7.77 0.00 43.11 2.74
2277 14073 7.203910 GTCAAATCGATGACCTAGAACTACAT 58.796 38.462 7.77 0.00 43.11 2.29
2278 14074 7.168302 GTCAAATCGATGACCTAGAACTACATG 59.832 40.741 7.77 0.00 43.11 3.21
2279 14075 4.569761 TCGATGACCTAGAACTACATGC 57.430 45.455 0.00 0.00 0.00 4.06
2280 14076 3.951680 TCGATGACCTAGAACTACATGCA 59.048 43.478 0.00 0.00 0.00 3.96
2281 14077 4.045104 CGATGACCTAGAACTACATGCAC 58.955 47.826 0.00 0.00 0.00 4.57
2282 14078 4.202060 CGATGACCTAGAACTACATGCACT 60.202 45.833 0.00 0.00 0.00 4.40
2283 14079 4.720649 TGACCTAGAACTACATGCACTC 57.279 45.455 0.00 0.00 0.00 3.51
2284 14080 3.447586 TGACCTAGAACTACATGCACTCC 59.552 47.826 0.00 0.00 0.00 3.85
2285 14081 2.766828 ACCTAGAACTACATGCACTCCC 59.233 50.000 0.00 0.00 0.00 4.30
2286 14082 3.034635 CCTAGAACTACATGCACTCCCT 58.965 50.000 0.00 0.00 0.00 4.20
2287 14083 4.215908 CCTAGAACTACATGCACTCCCTA 58.784 47.826 0.00 0.00 0.00 3.53
2288 14084 4.835615 CCTAGAACTACATGCACTCCCTAT 59.164 45.833 0.00 0.00 0.00 2.57
2289 14085 6.010850 CCTAGAACTACATGCACTCCCTATA 58.989 44.000 0.00 0.00 0.00 1.31
2290 14086 6.493802 CCTAGAACTACATGCACTCCCTATAA 59.506 42.308 0.00 0.00 0.00 0.98
2291 14087 6.808321 AGAACTACATGCACTCCCTATAAA 57.192 37.500 0.00 0.00 0.00 1.40
2292 14088 7.195374 AGAACTACATGCACTCCCTATAAAA 57.805 36.000 0.00 0.00 0.00 1.52
2293 14089 7.048512 AGAACTACATGCACTCCCTATAAAAC 58.951 38.462 0.00 0.00 0.00 2.43
2294 14090 5.357257 ACTACATGCACTCCCTATAAAACG 58.643 41.667 0.00 0.00 0.00 3.60
2295 14091 4.481368 ACATGCACTCCCTATAAAACGA 57.519 40.909 0.00 0.00 0.00 3.85
2296 14092 4.442706 ACATGCACTCCCTATAAAACGAG 58.557 43.478 0.00 0.00 0.00 4.18
2297 14093 4.161565 ACATGCACTCCCTATAAAACGAGA 59.838 41.667 0.00 0.00 0.00 4.04
2298 14094 4.119442 TGCACTCCCTATAAAACGAGAC 57.881 45.455 0.00 0.00 0.00 3.36
2299 14095 3.114065 GCACTCCCTATAAAACGAGACG 58.886 50.000 0.00 0.00 0.00 4.18
2300 14096 3.703420 CACTCCCTATAAAACGAGACGG 58.297 50.000 0.00 0.00 0.00 4.79
2301 14097 3.379372 CACTCCCTATAAAACGAGACGGA 59.621 47.826 0.00 0.00 0.00 4.69
2302 14098 3.631227 ACTCCCTATAAAACGAGACGGAG 59.369 47.826 0.00 0.00 41.20 4.63
2303 14099 2.954318 TCCCTATAAAACGAGACGGAGG 59.046 50.000 0.00 0.00 0.00 4.30
2304 14100 2.035576 CCCTATAAAACGAGACGGAGGG 59.964 54.545 0.00 0.00 36.68 4.30
2305 14101 2.954318 CCTATAAAACGAGACGGAGGGA 59.046 50.000 0.00 0.00 0.00 4.20
2306 14102 3.004524 CCTATAAAACGAGACGGAGGGAG 59.995 52.174 0.00 0.00 0.00 4.30
2307 14103 1.915141 TAAAACGAGACGGAGGGAGT 58.085 50.000 0.00 0.00 0.00 3.85
2308 14104 1.915141 AAAACGAGACGGAGGGAGTA 58.085 50.000 0.00 0.00 0.00 2.59
2309 14105 2.140839 AAACGAGACGGAGGGAGTAT 57.859 50.000 0.00 0.00 0.00 2.12
2310 14106 1.390565 AACGAGACGGAGGGAGTATG 58.609 55.000 0.00 0.00 0.00 2.39
2311 14107 0.255318 ACGAGACGGAGGGAGTATGT 59.745 55.000 0.00 0.00 0.00 2.29
2312 14108 0.663688 CGAGACGGAGGGAGTATGTG 59.336 60.000 0.00 0.00 0.00 3.21
2313 14109 1.033574 GAGACGGAGGGAGTATGTGG 58.966 60.000 0.00 0.00 0.00 4.17
2314 14110 0.335361 AGACGGAGGGAGTATGTGGT 59.665 55.000 0.00 0.00 0.00 4.16
2315 14111 0.745468 GACGGAGGGAGTATGTGGTC 59.255 60.000 0.00 0.00 0.00 4.02
2316 14112 0.335361 ACGGAGGGAGTATGTGGTCT 59.665 55.000 0.00 0.00 0.00 3.85
2317 14113 1.567649 ACGGAGGGAGTATGTGGTCTA 59.432 52.381 0.00 0.00 0.00 2.59
2318 14114 2.177233 ACGGAGGGAGTATGTGGTCTAT 59.823 50.000 0.00 0.00 0.00 1.98
2319 14115 2.820787 CGGAGGGAGTATGTGGTCTATC 59.179 54.545 0.00 0.00 0.00 2.08
2320 14116 3.750922 CGGAGGGAGTATGTGGTCTATCA 60.751 52.174 0.00 0.00 0.00 2.15
2321 14117 4.421131 GGAGGGAGTATGTGGTCTATCAT 58.579 47.826 0.00 0.00 0.00 2.45
2322 14118 4.464597 GGAGGGAGTATGTGGTCTATCATC 59.535 50.000 0.00 0.00 0.00 2.92
2323 14119 4.421131 AGGGAGTATGTGGTCTATCATCC 58.579 47.826 0.00 0.00 0.00 3.51
2324 14120 4.108778 AGGGAGTATGTGGTCTATCATCCT 59.891 45.833 0.00 0.00 0.00 3.24
2325 14121 4.221703 GGGAGTATGTGGTCTATCATCCTG 59.778 50.000 0.00 0.00 0.00 3.86
2326 14122 4.322349 GGAGTATGTGGTCTATCATCCTGC 60.322 50.000 0.00 0.00 0.00 4.85
2327 14123 3.580458 AGTATGTGGTCTATCATCCTGCC 59.420 47.826 0.00 0.00 0.00 4.85
2328 14124 1.131638 TGTGGTCTATCATCCTGCCC 58.868 55.000 0.00 0.00 0.00 5.36
2329 14125 1.344393 TGTGGTCTATCATCCTGCCCT 60.344 52.381 0.00 0.00 0.00 5.19
2330 14126 1.346068 GTGGTCTATCATCCTGCCCTC 59.654 57.143 0.00 0.00 0.00 4.30
2331 14127 1.221523 TGGTCTATCATCCTGCCCTCT 59.778 52.381 0.00 0.00 0.00 3.69
2332 14128 1.622811 GGTCTATCATCCTGCCCTCTG 59.377 57.143 0.00 0.00 0.00 3.35
2333 14129 1.622811 GTCTATCATCCTGCCCTCTGG 59.377 57.143 0.00 0.00 0.00 3.86
2350 14146 6.633325 CCTCTGGGGAAAGTATGATATGAT 57.367 41.667 0.00 0.00 37.23 2.45
2351 14147 7.739995 CCTCTGGGGAAAGTATGATATGATA 57.260 40.000 0.00 0.00 37.23 2.15
2352 14148 7.560368 CCTCTGGGGAAAGTATGATATGATAC 58.440 42.308 4.31 4.31 37.23 2.24
2353 14149 7.365117 CCTCTGGGGAAAGTATGATATGATACC 60.365 44.444 8.51 0.00 37.23 2.73
2354 14150 7.022496 TCTGGGGAAAGTATGATATGATACCA 58.978 38.462 8.51 0.00 30.20 3.25
2355 14151 7.016153 TGGGGAAAGTATGATATGATACCAC 57.984 40.000 8.51 0.00 30.20 4.16
2356 14152 6.560687 TGGGGAAAGTATGATATGATACCACA 59.439 38.462 8.51 0.00 30.20 4.17
2357 14153 6.879458 GGGGAAAGTATGATATGATACCACAC 59.121 42.308 8.51 2.70 30.20 3.82
2358 14154 7.256691 GGGGAAAGTATGATATGATACCACACT 60.257 40.741 8.51 0.00 30.20 3.55
2359 14155 8.812972 GGGAAAGTATGATATGATACCACACTA 58.187 37.037 8.51 0.00 30.20 2.74
2381 14177 2.775418 TGGTGATACCATGATCCCACT 58.225 47.619 0.00 0.00 44.79 4.00
2382 14178 2.439135 TGGTGATACCATGATCCCACTG 59.561 50.000 0.00 0.00 44.79 3.66
2383 14179 2.498167 GTGATACCATGATCCCACTGC 58.502 52.381 0.00 0.00 0.00 4.40
2384 14180 2.126057 TGATACCATGATCCCACTGCA 58.874 47.619 0.00 0.00 0.00 4.41
2385 14181 2.712627 TGATACCATGATCCCACTGCAT 59.287 45.455 0.00 0.00 0.00 3.96
2386 14182 3.909364 TGATACCATGATCCCACTGCATA 59.091 43.478 0.00 0.00 0.00 3.14
2387 14183 4.350520 TGATACCATGATCCCACTGCATAA 59.649 41.667 0.00 0.00 0.00 1.90
2388 14184 3.668141 ACCATGATCCCACTGCATAAA 57.332 42.857 0.00 0.00 0.00 1.40
2389 14185 3.979911 ACCATGATCCCACTGCATAAAA 58.020 40.909 0.00 0.00 0.00 1.52
2390 14186 4.549668 ACCATGATCCCACTGCATAAAAT 58.450 39.130 0.00 0.00 0.00 1.82
2391 14187 4.964262 ACCATGATCCCACTGCATAAAATT 59.036 37.500 0.00 0.00 0.00 1.82
2392 14188 6.135454 ACCATGATCCCACTGCATAAAATTA 58.865 36.000 0.00 0.00 0.00 1.40
2393 14189 6.610830 ACCATGATCCCACTGCATAAAATTAA 59.389 34.615 0.00 0.00 0.00 1.40
2394 14190 7.125507 ACCATGATCCCACTGCATAAAATTAAA 59.874 33.333 0.00 0.00 0.00 1.52
2395 14191 7.986320 CCATGATCCCACTGCATAAAATTAAAA 59.014 33.333 0.00 0.00 0.00 1.52
2396 14192 9.550406 CATGATCCCACTGCATAAAATTAAAAT 57.450 29.630 0.00 0.00 0.00 1.82
2401 14197 9.261035 TCCCACTGCATAAAATTAAAATTAGGA 57.739 29.630 0.00 0.00 0.00 2.94
2402 14198 9.883142 CCCACTGCATAAAATTAAAATTAGGAA 57.117 29.630 0.00 0.00 0.00 3.36
2433 14229 6.849588 AAAATCTGAAAAATTGTGAGTGCC 57.150 33.333 0.00 0.00 0.00 5.01
2434 14230 4.525912 ATCTGAAAAATTGTGAGTGCCC 57.474 40.909 0.00 0.00 0.00 5.36
2435 14231 3.295093 TCTGAAAAATTGTGAGTGCCCA 58.705 40.909 0.00 0.00 0.00 5.36
2436 14232 3.068024 TCTGAAAAATTGTGAGTGCCCAC 59.932 43.478 0.00 0.00 37.55 4.61
2437 14233 2.762887 TGAAAAATTGTGAGTGCCCACA 59.237 40.909 0.82 0.00 44.45 4.17
2438 14234 3.387374 TGAAAAATTGTGAGTGCCCACAT 59.613 39.130 0.82 0.00 45.31 3.21
2439 14235 4.586421 TGAAAAATTGTGAGTGCCCACATA 59.414 37.500 0.82 0.00 45.31 2.29
2440 14236 5.245751 TGAAAAATTGTGAGTGCCCACATAT 59.754 36.000 0.82 0.90 45.31 1.78
2441 14237 4.989279 AAATTGTGAGTGCCCACATATC 57.011 40.909 0.82 0.00 45.31 1.63
2442 14238 3.939740 ATTGTGAGTGCCCACATATCT 57.060 42.857 0.82 0.00 45.31 1.98
2443 14239 5.372343 AATTGTGAGTGCCCACATATCTA 57.628 39.130 0.82 0.00 45.31 1.98
2444 14240 3.819564 TGTGAGTGCCCACATATCTAC 57.180 47.619 0.82 0.00 41.63 2.59
2445 14241 3.103742 TGTGAGTGCCCACATATCTACA 58.896 45.455 0.82 0.00 41.63 2.74
2446 14242 3.517500 TGTGAGTGCCCACATATCTACAA 59.482 43.478 0.82 0.00 41.63 2.41
2447 14243 4.164030 TGTGAGTGCCCACATATCTACAAT 59.836 41.667 0.82 0.00 41.63 2.71
2448 14244 4.752101 GTGAGTGCCCACATATCTACAATC 59.248 45.833 0.82 0.00 37.04 2.67
2449 14245 4.655649 TGAGTGCCCACATATCTACAATCT 59.344 41.667 0.82 0.00 0.00 2.40
2450 14246 5.220710 AGTGCCCACATATCTACAATCTC 57.779 43.478 0.82 0.00 0.00 2.75
2451 14247 4.904251 AGTGCCCACATATCTACAATCTCT 59.096 41.667 0.82 0.00 0.00 3.10
2452 14248 6.077993 AGTGCCCACATATCTACAATCTCTA 58.922 40.000 0.82 0.00 0.00 2.43
2453 14249 6.554982 AGTGCCCACATATCTACAATCTCTAA 59.445 38.462 0.82 0.00 0.00 2.10
2454 14250 7.071196 AGTGCCCACATATCTACAATCTCTAAA 59.929 37.037 0.82 0.00 0.00 1.85
2455 14251 7.715249 GTGCCCACATATCTACAATCTCTAAAA 59.285 37.037 0.00 0.00 0.00 1.52
2456 14252 8.271458 TGCCCACATATCTACAATCTCTAAAAA 58.729 33.333 0.00 0.00 0.00 1.94
2457 14253 9.289782 GCCCACATATCTACAATCTCTAAAAAT 57.710 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
482 674 2.729479 CCTCTCGCAGGCACAGGAT 61.729 63.158 0.00 0.00 34.56 3.24
491 683 0.458543 ACGCATTGTACCTCTCGCAG 60.459 55.000 0.00 0.00 0.00 5.18
585 777 2.967745 AAGAAGCTGAGAAAAGGCCT 57.032 45.000 0.00 0.00 0.00 5.19
773 5794 3.567164 GCAGTAATACGTAGCTAGTGGGA 59.433 47.826 17.57 0.00 0.00 4.37
837 5865 7.290813 AGAAGAAAAAGATAAGGTGTTCCTGT 58.709 34.615 0.00 0.00 44.35 4.00
963 6007 0.319405 GGCTTGCTTGCTGGAAATGT 59.681 50.000 1.96 0.00 0.00 2.71
1050 10823 4.148825 GACGCCATCTCCGCCACT 62.149 66.667 0.00 0.00 0.00 4.00
1515 11302 1.000163 AGCAACAGTAGACACCGAGTG 60.000 52.381 2.92 2.92 39.75 3.51
1549 11336 4.503734 CACATGCAGAAAACAACAACGAAT 59.496 37.500 0.00 0.00 0.00 3.34
1712 11520 5.652744 AGACGTTAACAACACTTGCTAAG 57.347 39.130 6.39 0.00 0.00 2.18
1725 13502 5.368374 CGTGTTGGTATCAAAGACGTTAAC 58.632 41.667 11.61 0.00 36.78 2.01
1782 13566 3.982576 ATCAAGTTGACACGTTTTCCC 57.017 42.857 7.96 0.00 0.00 3.97
1783 13567 7.136119 TGATTTATCAAGTTGACACGTTTTCC 58.864 34.615 7.96 0.00 33.08 3.13
1784 13568 8.555166 TTGATTTATCAAGTTGACACGTTTTC 57.445 30.769 7.96 0.56 41.51 2.29
1808 13598 3.675467 GCGGTTAGAAAATCATCGCTT 57.325 42.857 0.00 0.00 38.82 4.68
1811 13601 2.286418 GCCAGCGGTTAGAAAATCATCG 60.286 50.000 0.00 0.00 0.00 3.84
1823 13613 1.034838 TGTTGTCTTTGCCAGCGGTT 61.035 50.000 0.00 0.00 0.00 4.44
1829 13619 6.952773 AAGTTAGTTATGTTGTCTTTGCCA 57.047 33.333 0.00 0.00 0.00 4.92
1830 13620 7.867752 TGTAAGTTAGTTATGTTGTCTTTGCC 58.132 34.615 0.00 0.00 0.00 4.52
1880 13673 4.530875 GAGGGGATGAACATCACATCTTT 58.469 43.478 19.79 2.09 45.57 2.52
1919 13715 1.276622 TCCACTCTTGGGAGCCTAAC 58.723 55.000 0.00 0.00 44.11 2.34
1923 13719 1.072965 CCATATCCACTCTTGGGAGCC 59.927 57.143 0.00 0.00 44.11 4.70
1935 13731 7.618907 TGTCATCAATTTTCCTTTCCATATCCA 59.381 33.333 0.00 0.00 0.00 3.41
1941 13737 6.720748 TGAGATGTCATCAATTTTCCTTTCCA 59.279 34.615 15.20 0.00 0.00 3.53
1957 13753 6.361433 TCCCTTTGTTTTAAGTGAGATGTCA 58.639 36.000 0.00 0.00 0.00 3.58
1958 13754 6.877611 TCCCTTTGTTTTAAGTGAGATGTC 57.122 37.500 0.00 0.00 0.00 3.06
1959 13755 7.123547 TGTTTCCCTTTGTTTTAAGTGAGATGT 59.876 33.333 0.00 0.00 0.00 3.06
1960 13756 7.488322 TGTTTCCCTTTGTTTTAAGTGAGATG 58.512 34.615 0.00 0.00 0.00 2.90
1961 13757 7.654022 TGTTTCCCTTTGTTTTAAGTGAGAT 57.346 32.000 0.00 0.00 0.00 2.75
1962 13758 7.469537 TTGTTTCCCTTTGTTTTAAGTGAGA 57.530 32.000 0.00 0.00 0.00 3.27
1963 13759 7.224557 CCATTGTTTCCCTTTGTTTTAAGTGAG 59.775 37.037 0.00 0.00 0.00 3.51
1964 13760 7.044798 CCATTGTTTCCCTTTGTTTTAAGTGA 58.955 34.615 0.00 0.00 0.00 3.41
1965 13761 7.044798 TCCATTGTTTCCCTTTGTTTTAAGTG 58.955 34.615 0.00 0.00 0.00 3.16
1966 13762 7.125053 TCTCCATTGTTTCCCTTTGTTTTAAGT 59.875 33.333 0.00 0.00 0.00 2.24
1967 13763 7.496747 TCTCCATTGTTTCCCTTTGTTTTAAG 58.503 34.615 0.00 0.00 0.00 1.85
1968 13764 7.425224 TCTCCATTGTTTCCCTTTGTTTTAA 57.575 32.000 0.00 0.00 0.00 1.52
1969 13765 7.425224 TTCTCCATTGTTTCCCTTTGTTTTA 57.575 32.000 0.00 0.00 0.00 1.52
1970 13766 5.948742 TCTCCATTGTTTCCCTTTGTTTT 57.051 34.783 0.00 0.00 0.00 2.43
1971 13767 5.948742 TTCTCCATTGTTTCCCTTTGTTT 57.051 34.783 0.00 0.00 0.00 2.83
1972 13768 5.948742 TTTCTCCATTGTTTCCCTTTGTT 57.051 34.783 0.00 0.00 0.00 2.83
1973 13769 5.660864 TCTTTTCTCCATTGTTTCCCTTTGT 59.339 36.000 0.00 0.00 0.00 2.83
1974 13770 6.040842 TCTCTTTTCTCCATTGTTTCCCTTTG 59.959 38.462 0.00 0.00 0.00 2.77
1975 13771 6.040955 GTCTCTTTTCTCCATTGTTTCCCTTT 59.959 38.462 0.00 0.00 0.00 3.11
1976 13772 5.536538 GTCTCTTTTCTCCATTGTTTCCCTT 59.463 40.000 0.00 0.00 0.00 3.95
1977 13773 5.073428 GTCTCTTTTCTCCATTGTTTCCCT 58.927 41.667 0.00 0.00 0.00 4.20
1978 13774 5.073428 AGTCTCTTTTCTCCATTGTTTCCC 58.927 41.667 0.00 0.00 0.00 3.97
1979 13775 6.039829 ACAAGTCTCTTTTCTCCATTGTTTCC 59.960 38.462 0.00 0.00 0.00 3.13
1980 13776 7.032377 ACAAGTCTCTTTTCTCCATTGTTTC 57.968 36.000 0.00 0.00 0.00 2.78
1981 13777 7.340487 AGAACAAGTCTCTTTTCTCCATTGTTT 59.660 33.333 0.00 0.00 39.11 2.83
1982 13778 6.830838 AGAACAAGTCTCTTTTCTCCATTGTT 59.169 34.615 0.00 0.00 41.03 2.83
1983 13779 6.261826 CAGAACAAGTCTCTTTTCTCCATTGT 59.738 38.462 0.00 0.00 32.70 2.71
1984 13780 6.293845 CCAGAACAAGTCTCTTTTCTCCATTG 60.294 42.308 0.00 0.00 32.70 2.82
1985 13781 5.767168 CCAGAACAAGTCTCTTTTCTCCATT 59.233 40.000 0.00 0.00 32.70 3.16
1986 13782 5.312079 CCAGAACAAGTCTCTTTTCTCCAT 58.688 41.667 0.00 0.00 32.70 3.41
1987 13783 4.444876 CCCAGAACAAGTCTCTTTTCTCCA 60.445 45.833 0.00 0.00 32.70 3.86
1988 13784 4.068599 CCCAGAACAAGTCTCTTTTCTCC 58.931 47.826 0.00 0.00 32.70 3.71
1989 13785 4.709250 ACCCAGAACAAGTCTCTTTTCTC 58.291 43.478 0.00 0.00 32.70 2.87
1990 13786 4.779993 ACCCAGAACAAGTCTCTTTTCT 57.220 40.909 0.00 0.00 32.70 2.52
1991 13787 4.640647 ACAACCCAGAACAAGTCTCTTTTC 59.359 41.667 0.00 0.00 32.70 2.29
1992 13788 4.399303 CACAACCCAGAACAAGTCTCTTTT 59.601 41.667 0.00 0.00 32.70 2.27
1993 13789 3.947834 CACAACCCAGAACAAGTCTCTTT 59.052 43.478 0.00 0.00 32.70 2.52
1994 13790 3.199946 TCACAACCCAGAACAAGTCTCTT 59.800 43.478 0.00 0.00 32.70 2.85
1995 13791 2.771943 TCACAACCCAGAACAAGTCTCT 59.228 45.455 0.00 0.00 32.70 3.10
1996 13792 3.194005 TCACAACCCAGAACAAGTCTC 57.806 47.619 0.00 0.00 32.70 3.36
1997 13793 3.117888 ACATCACAACCCAGAACAAGTCT 60.118 43.478 0.00 0.00 36.88 3.24
1998 13794 3.214328 ACATCACAACCCAGAACAAGTC 58.786 45.455 0.00 0.00 0.00 3.01
1999 13795 3.297134 ACATCACAACCCAGAACAAGT 57.703 42.857 0.00 0.00 0.00 3.16
2000 13796 5.507315 GGTTAACATCACAACCCAGAACAAG 60.507 44.000 8.10 0.00 38.63 3.16
2001 13797 4.339814 GGTTAACATCACAACCCAGAACAA 59.660 41.667 8.10 0.00 38.63 2.83
2002 13798 3.886505 GGTTAACATCACAACCCAGAACA 59.113 43.478 8.10 0.00 38.63 3.18
2003 13799 3.886505 TGGTTAACATCACAACCCAGAAC 59.113 43.478 8.10 0.00 43.01 3.01
2004 13800 4.171878 TGGTTAACATCACAACCCAGAA 57.828 40.909 8.10 0.00 43.01 3.02
2005 13801 3.866703 TGGTTAACATCACAACCCAGA 57.133 42.857 8.10 0.00 43.01 3.86
2016 13812 5.888982 AGTAAGATCCCGATGGTTAACAT 57.111 39.130 8.10 0.00 44.18 2.71
2017 13813 5.895534 AGTAGTAAGATCCCGATGGTTAACA 59.104 40.000 8.10 0.00 0.00 2.41
2018 13814 6.402456 AGTAGTAAGATCCCGATGGTTAAC 57.598 41.667 0.00 0.00 0.00 2.01
2019 13815 6.837568 AGAAGTAGTAAGATCCCGATGGTTAA 59.162 38.462 0.00 0.00 0.00 2.01
2020 13816 6.371278 AGAAGTAGTAAGATCCCGATGGTTA 58.629 40.000 0.00 0.00 0.00 2.85
2021 13817 5.209659 AGAAGTAGTAAGATCCCGATGGTT 58.790 41.667 0.00 0.00 0.00 3.67
2022 13818 4.805744 AGAAGTAGTAAGATCCCGATGGT 58.194 43.478 0.00 0.00 0.00 3.55
2023 13819 4.827835 TGAGAAGTAGTAAGATCCCGATGG 59.172 45.833 0.00 0.00 0.00 3.51
2024 13820 6.582677 ATGAGAAGTAGTAAGATCCCGATG 57.417 41.667 0.00 0.00 0.00 3.84
2025 13821 8.707796 TTTATGAGAAGTAGTAAGATCCCGAT 57.292 34.615 0.00 0.00 0.00 4.18
2026 13822 8.707796 ATTTATGAGAAGTAGTAAGATCCCGA 57.292 34.615 0.00 0.00 0.00 5.14
2049 13845 5.878406 TTTCACCCCACAACAAACATATT 57.122 34.783 0.00 0.00 0.00 1.28
2055 13851 4.256920 CACAATTTTCACCCCACAACAAA 58.743 39.130 0.00 0.00 0.00 2.83
2085 13881 1.138047 GACGCGGAGGACGTACATTG 61.138 60.000 12.47 0.00 45.24 2.82
2099 13895 1.070843 CATGCCTTATAAACCGACGCG 60.071 52.381 3.53 3.53 0.00 6.01
2100 13896 1.333791 GCATGCCTTATAAACCGACGC 60.334 52.381 6.36 0.00 0.00 5.19
2101 13897 1.070843 CGCATGCCTTATAAACCGACG 60.071 52.381 13.15 0.00 0.00 5.12
2102 13898 1.333791 GCGCATGCCTTATAAACCGAC 60.334 52.381 13.15 0.00 33.98 4.79
2103 13899 0.941542 GCGCATGCCTTATAAACCGA 59.058 50.000 13.15 0.00 33.98 4.69
2104 13900 0.660488 TGCGCATGCCTTATAAACCG 59.340 50.000 13.15 0.00 41.78 4.44
2105 13901 2.665519 CGATGCGCATGCCTTATAAACC 60.666 50.000 30.76 7.46 41.78 3.27
2106 13902 2.032030 ACGATGCGCATGCCTTATAAAC 60.032 45.455 30.76 8.03 41.78 2.01
2107 13903 2.217750 ACGATGCGCATGCCTTATAAA 58.782 42.857 30.76 0.00 41.78 1.40
2108 13904 1.877637 ACGATGCGCATGCCTTATAA 58.122 45.000 30.76 0.00 41.78 0.98
2109 13905 1.798223 GAACGATGCGCATGCCTTATA 59.202 47.619 30.76 0.00 41.78 0.98
2110 13906 0.588252 GAACGATGCGCATGCCTTAT 59.412 50.000 30.76 1.03 41.78 1.73
2111 13907 0.461870 AGAACGATGCGCATGCCTTA 60.462 50.000 30.76 0.00 41.78 2.69
2112 13908 0.461870 TAGAACGATGCGCATGCCTT 60.462 50.000 30.76 15.32 41.78 4.35
2113 13909 0.877649 CTAGAACGATGCGCATGCCT 60.878 55.000 30.76 19.51 41.78 4.75
2114 13910 1.566563 CTAGAACGATGCGCATGCC 59.433 57.895 30.76 13.74 41.78 4.40
2115 13911 1.154205 ACCTAGAACGATGCGCATGC 61.154 55.000 30.76 17.81 43.20 4.06
2116 13912 1.004610 CAACCTAGAACGATGCGCATG 60.005 52.381 30.76 21.42 0.00 4.06
2117 13913 1.134818 TCAACCTAGAACGATGCGCAT 60.135 47.619 25.66 25.66 0.00 4.73
2118 13914 0.245266 TCAACCTAGAACGATGCGCA 59.755 50.000 14.96 14.96 0.00 6.09
2119 13915 0.645868 GTCAACCTAGAACGATGCGC 59.354 55.000 0.00 0.00 0.00 6.09
2120 13916 1.990799 TGTCAACCTAGAACGATGCG 58.009 50.000 0.00 0.00 0.00 4.73
2121 13917 4.946784 AATTGTCAACCTAGAACGATGC 57.053 40.909 0.00 0.00 0.00 3.91
2122 13918 6.313905 AGCTAAATTGTCAACCTAGAACGATG 59.686 38.462 6.86 0.00 0.00 3.84
2123 13919 6.407202 AGCTAAATTGTCAACCTAGAACGAT 58.593 36.000 6.86 0.00 0.00 3.73
2124 13920 5.790593 AGCTAAATTGTCAACCTAGAACGA 58.209 37.500 6.86 0.00 0.00 3.85
2125 13921 7.331193 AGTTAGCTAAATTGTCAACCTAGAACG 59.669 37.037 7.99 0.00 0.00 3.95
2126 13922 8.549338 AGTTAGCTAAATTGTCAACCTAGAAC 57.451 34.615 7.99 0.00 0.00 3.01
2175 13971 9.744468 GCGGATGTAGTTTCCAAAAATATATTT 57.256 29.630 4.81 4.81 32.45 1.40
2176 13972 9.131791 AGCGGATGTAGTTTCCAAAAATATATT 57.868 29.630 0.00 0.00 32.45 1.28
2177 13973 8.691661 AGCGGATGTAGTTTCCAAAAATATAT 57.308 30.769 0.00 0.00 32.45 0.86
2178 13974 8.514330 AAGCGGATGTAGTTTCCAAAAATATA 57.486 30.769 0.00 0.00 32.45 0.86
2179 13975 7.404671 AAGCGGATGTAGTTTCCAAAAATAT 57.595 32.000 0.00 0.00 32.45 1.28
2180 13976 6.827586 AAGCGGATGTAGTTTCCAAAAATA 57.172 33.333 0.00 0.00 32.45 1.40
2181 13977 5.722021 AAGCGGATGTAGTTTCCAAAAAT 57.278 34.783 0.00 0.00 32.45 1.82
2182 13978 6.487331 TCTTAAGCGGATGTAGTTTCCAAAAA 59.513 34.615 0.00 0.00 32.45 1.94
2183 13979 5.998981 TCTTAAGCGGATGTAGTTTCCAAAA 59.001 36.000 0.00 0.00 32.45 2.44
2184 13980 5.553123 TCTTAAGCGGATGTAGTTTCCAAA 58.447 37.500 0.00 0.00 32.45 3.28
2185 13981 5.155278 TCTTAAGCGGATGTAGTTTCCAA 57.845 39.130 0.00 0.00 32.45 3.53
2186 13982 4.811969 TCTTAAGCGGATGTAGTTTCCA 57.188 40.909 0.00 0.00 32.45 3.53
2187 13983 5.236695 GGATTCTTAAGCGGATGTAGTTTCC 59.763 44.000 0.00 0.00 0.00 3.13
2188 13984 5.815740 TGGATTCTTAAGCGGATGTAGTTTC 59.184 40.000 0.00 0.00 0.00 2.78
2189 13985 5.741011 TGGATTCTTAAGCGGATGTAGTTT 58.259 37.500 0.00 0.00 0.00 2.66
2190 13986 5.353394 TGGATTCTTAAGCGGATGTAGTT 57.647 39.130 0.00 0.00 0.00 2.24
2191 13987 5.353394 TTGGATTCTTAAGCGGATGTAGT 57.647 39.130 0.00 0.00 0.00 2.73
2192 13988 5.991606 TCATTGGATTCTTAAGCGGATGTAG 59.008 40.000 0.00 0.00 0.00 2.74
2193 13989 5.924356 TCATTGGATTCTTAAGCGGATGTA 58.076 37.500 0.00 0.00 0.00 2.29
2194 13990 4.780815 TCATTGGATTCTTAAGCGGATGT 58.219 39.130 0.00 0.00 0.00 3.06
2195 13991 5.240183 ACATCATTGGATTCTTAAGCGGATG 59.760 40.000 0.00 0.00 35.70 3.51
2196 13992 5.380043 ACATCATTGGATTCTTAAGCGGAT 58.620 37.500 0.00 0.00 0.00 4.18
2197 13993 4.780815 ACATCATTGGATTCTTAAGCGGA 58.219 39.130 0.00 0.00 0.00 5.54
2198 13994 5.760253 AGTACATCATTGGATTCTTAAGCGG 59.240 40.000 0.00 0.00 0.00 5.52
2199 13995 6.851222 AGTACATCATTGGATTCTTAAGCG 57.149 37.500 0.00 0.00 0.00 4.68
2200 13996 9.294030 CAAAAGTACATCATTGGATTCTTAAGC 57.706 33.333 0.00 0.00 0.00 3.09
2201 13997 9.793252 CCAAAAGTACATCATTGGATTCTTAAG 57.207 33.333 11.40 0.00 44.01 1.85
2202 13998 9.308000 ACCAAAAGTACATCATTGGATTCTTAA 57.692 29.630 19.45 0.00 44.01 1.85
2203 13999 8.739039 CACCAAAAGTACATCATTGGATTCTTA 58.261 33.333 19.45 0.00 44.01 2.10
2204 14000 7.451255 TCACCAAAAGTACATCATTGGATTCTT 59.549 33.333 19.45 1.64 44.01 2.52
2205 14001 6.947733 TCACCAAAAGTACATCATTGGATTCT 59.052 34.615 19.45 1.91 44.01 2.40
2206 14002 7.029563 GTCACCAAAAGTACATCATTGGATTC 58.970 38.462 19.45 9.33 44.01 2.52
2207 14003 6.493115 TGTCACCAAAAGTACATCATTGGATT 59.507 34.615 19.45 2.71 44.01 3.01
2208 14004 6.009589 TGTCACCAAAAGTACATCATTGGAT 58.990 36.000 19.45 6.94 44.01 3.41
2209 14005 5.380900 TGTCACCAAAAGTACATCATTGGA 58.619 37.500 19.45 2.71 44.01 3.53
2210 14006 5.703978 TGTCACCAAAAGTACATCATTGG 57.296 39.130 13.95 13.95 46.14 3.16
2213 14009 9.905713 AGTTATATGTCACCAAAAGTACATCAT 57.094 29.630 0.00 0.00 34.54 2.45
2214 14010 9.378551 GAGTTATATGTCACCAAAAGTACATCA 57.621 33.333 0.00 0.00 34.54 3.07
2215 14011 9.378551 TGAGTTATATGTCACCAAAAGTACATC 57.621 33.333 0.00 0.00 34.54 3.06
2216 14012 9.905713 ATGAGTTATATGTCACCAAAAGTACAT 57.094 29.630 0.00 0.00 36.56 2.29
2243 14039 9.751542 CTAGGTCATCGATTTGACTAACTAAAT 57.248 33.333 16.51 0.00 44.39 1.40
2244 14040 8.963725 TCTAGGTCATCGATTTGACTAACTAAA 58.036 33.333 16.51 0.00 44.39 1.85
2245 14041 8.515695 TCTAGGTCATCGATTTGACTAACTAA 57.484 34.615 16.51 0.00 44.39 2.24
2246 14042 8.404000 GTTCTAGGTCATCGATTTGACTAACTA 58.596 37.037 16.51 9.93 44.39 2.24
2247 14043 7.122948 AGTTCTAGGTCATCGATTTGACTAACT 59.877 37.037 16.51 16.01 44.39 2.24
2248 14044 7.259161 AGTTCTAGGTCATCGATTTGACTAAC 58.741 38.462 16.51 14.59 44.39 2.34
2249 14045 7.406031 AGTTCTAGGTCATCGATTTGACTAA 57.594 36.000 16.51 6.50 44.39 2.24
2250 14046 7.555195 TGTAGTTCTAGGTCATCGATTTGACTA 59.445 37.037 16.51 7.23 44.39 2.59
2251 14047 5.923733 AGTTCTAGGTCATCGATTTGACT 57.076 39.130 16.51 6.53 44.39 3.41
2252 14048 6.561614 TGTAGTTCTAGGTCATCGATTTGAC 58.438 40.000 10.13 10.13 44.27 3.18
2253 14049 6.769134 TGTAGTTCTAGGTCATCGATTTGA 57.231 37.500 0.00 0.00 0.00 2.69
2254 14050 6.074088 GCATGTAGTTCTAGGTCATCGATTTG 60.074 42.308 0.00 0.00 0.00 2.32
2255 14051 5.986135 GCATGTAGTTCTAGGTCATCGATTT 59.014 40.000 0.00 0.00 0.00 2.17
2256 14052 5.069119 TGCATGTAGTTCTAGGTCATCGATT 59.931 40.000 0.00 0.00 0.00 3.34
2257 14053 4.584743 TGCATGTAGTTCTAGGTCATCGAT 59.415 41.667 0.00 0.00 0.00 3.59
2258 14054 3.951680 TGCATGTAGTTCTAGGTCATCGA 59.048 43.478 0.00 0.00 0.00 3.59
2259 14055 4.045104 GTGCATGTAGTTCTAGGTCATCG 58.955 47.826 0.00 0.00 0.00 3.84
2260 14056 5.269505 AGTGCATGTAGTTCTAGGTCATC 57.730 43.478 0.00 0.00 0.00 2.92
2261 14057 4.100189 GGAGTGCATGTAGTTCTAGGTCAT 59.900 45.833 0.00 0.00 0.00 3.06
2262 14058 3.447586 GGAGTGCATGTAGTTCTAGGTCA 59.552 47.826 0.00 0.00 0.00 4.02
2263 14059 3.181474 GGGAGTGCATGTAGTTCTAGGTC 60.181 52.174 0.00 0.00 0.00 3.85
2264 14060 2.766828 GGGAGTGCATGTAGTTCTAGGT 59.233 50.000 0.00 0.00 0.00 3.08
2265 14061 3.034635 AGGGAGTGCATGTAGTTCTAGG 58.965 50.000 0.00 0.00 0.00 3.02
2266 14062 7.526142 TTATAGGGAGTGCATGTAGTTCTAG 57.474 40.000 0.00 0.00 0.00 2.43
2267 14063 7.907841 TTTATAGGGAGTGCATGTAGTTCTA 57.092 36.000 0.00 1.91 0.00 2.10
2268 14064 6.808321 TTTATAGGGAGTGCATGTAGTTCT 57.192 37.500 0.00 0.00 0.00 3.01
2269 14065 6.018994 CGTTTTATAGGGAGTGCATGTAGTTC 60.019 42.308 0.00 0.00 0.00 3.01
2270 14066 5.815740 CGTTTTATAGGGAGTGCATGTAGTT 59.184 40.000 0.00 0.00 0.00 2.24
2271 14067 5.128171 TCGTTTTATAGGGAGTGCATGTAGT 59.872 40.000 0.00 0.00 0.00 2.73
2272 14068 5.597806 TCGTTTTATAGGGAGTGCATGTAG 58.402 41.667 0.00 0.00 0.00 2.74
2273 14069 5.361571 TCTCGTTTTATAGGGAGTGCATGTA 59.638 40.000 0.00 0.00 0.00 2.29
2274 14070 4.161565 TCTCGTTTTATAGGGAGTGCATGT 59.838 41.667 0.00 0.00 0.00 3.21
2275 14071 4.508124 GTCTCGTTTTATAGGGAGTGCATG 59.492 45.833 0.00 0.00 0.00 4.06
2276 14072 4.694339 GTCTCGTTTTATAGGGAGTGCAT 58.306 43.478 0.00 0.00 0.00 3.96
2277 14073 3.428452 CGTCTCGTTTTATAGGGAGTGCA 60.428 47.826 0.00 0.00 0.00 4.57
2278 14074 3.114065 CGTCTCGTTTTATAGGGAGTGC 58.886 50.000 0.00 0.00 0.00 4.40
2279 14075 3.379372 TCCGTCTCGTTTTATAGGGAGTG 59.621 47.826 0.00 0.00 0.00 3.51
2280 14076 3.624777 TCCGTCTCGTTTTATAGGGAGT 58.375 45.455 0.00 0.00 0.00 3.85
2281 14077 3.004524 CCTCCGTCTCGTTTTATAGGGAG 59.995 52.174 0.00 0.00 41.51 4.30
2282 14078 2.954318 CCTCCGTCTCGTTTTATAGGGA 59.046 50.000 0.00 0.00 0.00 4.20
2283 14079 2.035576 CCCTCCGTCTCGTTTTATAGGG 59.964 54.545 0.00 0.00 36.73 3.53
2284 14080 2.954318 TCCCTCCGTCTCGTTTTATAGG 59.046 50.000 0.00 0.00 0.00 2.57
2285 14081 3.631227 ACTCCCTCCGTCTCGTTTTATAG 59.369 47.826 0.00 0.00 0.00 1.31
2286 14082 3.624777 ACTCCCTCCGTCTCGTTTTATA 58.375 45.455 0.00 0.00 0.00 0.98
2287 14083 2.454538 ACTCCCTCCGTCTCGTTTTAT 58.545 47.619 0.00 0.00 0.00 1.40
2288 14084 1.915141 ACTCCCTCCGTCTCGTTTTA 58.085 50.000 0.00 0.00 0.00 1.52
2289 14085 1.915141 TACTCCCTCCGTCTCGTTTT 58.085 50.000 0.00 0.00 0.00 2.43
2290 14086 1.749634 CATACTCCCTCCGTCTCGTTT 59.250 52.381 0.00 0.00 0.00 3.60
2291 14087 1.340795 ACATACTCCCTCCGTCTCGTT 60.341 52.381 0.00 0.00 0.00 3.85
2292 14088 0.255318 ACATACTCCCTCCGTCTCGT 59.745 55.000 0.00 0.00 0.00 4.18
2293 14089 0.663688 CACATACTCCCTCCGTCTCG 59.336 60.000 0.00 0.00 0.00 4.04
2294 14090 1.033574 CCACATACTCCCTCCGTCTC 58.966 60.000 0.00 0.00 0.00 3.36
2295 14091 0.335361 ACCACATACTCCCTCCGTCT 59.665 55.000 0.00 0.00 0.00 4.18
2296 14092 0.745468 GACCACATACTCCCTCCGTC 59.255 60.000 0.00 0.00 0.00 4.79
2297 14093 0.335361 AGACCACATACTCCCTCCGT 59.665 55.000 0.00 0.00 0.00 4.69
2298 14094 2.359981 TAGACCACATACTCCCTCCG 57.640 55.000 0.00 0.00 0.00 4.63
2299 14095 3.845860 TGATAGACCACATACTCCCTCC 58.154 50.000 0.00 0.00 0.00 4.30
2300 14096 4.464597 GGATGATAGACCACATACTCCCTC 59.535 50.000 0.00 0.00 0.00 4.30
2301 14097 4.108778 AGGATGATAGACCACATACTCCCT 59.891 45.833 0.00 0.00 32.96 4.20
2302 14098 4.221703 CAGGATGATAGACCACATACTCCC 59.778 50.000 0.00 0.00 39.69 4.30
2303 14099 4.322349 GCAGGATGATAGACCACATACTCC 60.322 50.000 0.00 0.00 39.69 3.85
2304 14100 4.322349 GGCAGGATGATAGACCACATACTC 60.322 50.000 0.00 0.00 39.69 2.59
2305 14101 3.580458 GGCAGGATGATAGACCACATACT 59.420 47.826 0.00 0.00 39.69 2.12
2306 14102 3.307059 GGGCAGGATGATAGACCACATAC 60.307 52.174 0.00 0.00 39.69 2.39
2307 14103 2.906389 GGGCAGGATGATAGACCACATA 59.094 50.000 0.00 0.00 39.69 2.29
2308 14104 1.701847 GGGCAGGATGATAGACCACAT 59.298 52.381 0.00 0.00 39.69 3.21
2309 14105 1.131638 GGGCAGGATGATAGACCACA 58.868 55.000 0.00 0.00 39.69 4.17
2310 14106 1.346068 GAGGGCAGGATGATAGACCAC 59.654 57.143 0.00 0.00 39.69 4.16
2311 14107 1.221523 AGAGGGCAGGATGATAGACCA 59.778 52.381 0.00 0.00 39.69 4.02
2312 14108 1.622811 CAGAGGGCAGGATGATAGACC 59.377 57.143 0.00 0.00 39.69 3.85
2313 14109 1.622811 CCAGAGGGCAGGATGATAGAC 59.377 57.143 0.00 0.00 39.69 2.59
2314 14110 1.483876 CCCAGAGGGCAGGATGATAGA 60.484 57.143 0.00 0.00 38.34 1.98
2315 14111 0.982704 CCCAGAGGGCAGGATGATAG 59.017 60.000 0.00 0.00 38.34 2.08
2316 14112 3.170567 CCCAGAGGGCAGGATGATA 57.829 57.895 0.00 0.00 38.34 2.15
2317 14113 3.998797 CCCAGAGGGCAGGATGAT 58.001 61.111 0.00 0.00 38.34 2.45
2327 14123 6.633325 ATCATATCATACTTTCCCCAGAGG 57.367 41.667 0.00 0.00 0.00 3.69
2328 14124 7.180946 TGGTATCATATCATACTTTCCCCAGAG 59.819 40.741 0.00 0.00 30.93 3.35
2329 14125 7.022496 TGGTATCATATCATACTTTCCCCAGA 58.978 38.462 0.00 0.00 30.93 3.86
2330 14126 7.106239 GTGGTATCATATCATACTTTCCCCAG 58.894 42.308 0.00 0.00 30.93 4.45
2331 14127 6.560687 TGTGGTATCATATCATACTTTCCCCA 59.439 38.462 0.00 0.00 30.93 4.96
2332 14128 6.879458 GTGTGGTATCATATCATACTTTCCCC 59.121 42.308 0.00 0.00 29.46 4.81
2333 14129 7.680730 AGTGTGGTATCATATCATACTTTCCC 58.319 38.462 1.52 0.00 37.92 3.97
2362 14158 2.811873 GCAGTGGGATCATGGTATCACC 60.812 54.545 7.34 2.66 39.22 4.02
2363 14159 2.158769 TGCAGTGGGATCATGGTATCAC 60.159 50.000 0.00 3.67 0.00 3.06
2364 14160 2.126057 TGCAGTGGGATCATGGTATCA 58.874 47.619 0.00 0.00 0.00 2.15
2365 14161 2.936919 TGCAGTGGGATCATGGTATC 57.063 50.000 0.00 0.00 0.00 2.24
2366 14162 4.999469 TTATGCAGTGGGATCATGGTAT 57.001 40.909 0.00 0.00 0.00 2.73
2367 14163 4.787135 TTTATGCAGTGGGATCATGGTA 57.213 40.909 0.00 0.00 0.00 3.25
2368 14164 3.668141 TTTATGCAGTGGGATCATGGT 57.332 42.857 0.00 0.00 0.00 3.55
2369 14165 5.540400 AATTTTATGCAGTGGGATCATGG 57.460 39.130 0.00 0.00 0.00 3.66
2370 14166 8.945481 TTTTAATTTTATGCAGTGGGATCATG 57.055 30.769 0.00 0.00 0.00 3.07
2375 14171 9.261035 TCCTAATTTTAATTTTATGCAGTGGGA 57.739 29.630 0.00 0.00 0.00 4.37
2376 14172 9.883142 TTCCTAATTTTAATTTTATGCAGTGGG 57.117 29.630 0.00 0.00 0.00 4.61
2409 14205 6.260714 GGGCACTCACAATTTTTCAGATTTTT 59.739 34.615 0.00 0.00 0.00 1.94
2410 14206 5.759763 GGGCACTCACAATTTTTCAGATTTT 59.240 36.000 0.00 0.00 0.00 1.82
2411 14207 5.163322 TGGGCACTCACAATTTTTCAGATTT 60.163 36.000 0.00 0.00 0.00 2.17
2412 14208 4.344679 TGGGCACTCACAATTTTTCAGATT 59.655 37.500 0.00 0.00 0.00 2.40
2413 14209 3.896888 TGGGCACTCACAATTTTTCAGAT 59.103 39.130 0.00 0.00 0.00 2.90
2414 14210 3.068024 GTGGGCACTCACAATTTTTCAGA 59.932 43.478 0.00 0.00 37.57 3.27
2415 14211 3.181477 TGTGGGCACTCACAATTTTTCAG 60.181 43.478 0.00 0.00 43.70 3.02
2416 14212 2.762887 TGTGGGCACTCACAATTTTTCA 59.237 40.909 0.00 0.00 43.70 2.69
2417 14213 3.451141 TGTGGGCACTCACAATTTTTC 57.549 42.857 0.00 0.00 43.70 2.29
2425 14221 3.819564 TGTAGATATGTGGGCACTCAC 57.180 47.619 0.00 0.00 38.09 3.51
2426 14222 4.655649 AGATTGTAGATATGTGGGCACTCA 59.344 41.667 0.00 0.00 0.00 3.41
2427 14223 5.011533 AGAGATTGTAGATATGTGGGCACTC 59.988 44.000 0.00 0.00 0.00 3.51
2428 14224 4.904251 AGAGATTGTAGATATGTGGGCACT 59.096 41.667 0.00 0.00 0.00 4.40
2429 14225 5.220710 AGAGATTGTAGATATGTGGGCAC 57.779 43.478 0.00 0.00 0.00 5.01
2430 14226 6.994421 TTAGAGATTGTAGATATGTGGGCA 57.006 37.500 0.00 0.00 0.00 5.36
2431 14227 8.677148 TTTTTAGAGATTGTAGATATGTGGGC 57.323 34.615 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.