Multiple sequence alignment - TraesCS2B01G500500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G500500 chr2B 100.000 5336 0 0 1 5336 695863482 695858147 0.000000e+00 9854.0
1 TraesCS2B01G500500 chr2B 85.000 120 17 1 4 122 373360182 373360063 2.610000e-23 121.0
2 TraesCS2B01G500500 chr2D 88.493 1686 114 34 3369 5035 578937466 578935842 0.000000e+00 1965.0
3 TraesCS2B01G500500 chr2D 92.975 726 42 6 596 1317 578939592 578938872 0.000000e+00 1050.0
4 TraesCS2B01G500500 chr2D 89.984 639 29 10 1321 1946 578938654 578938038 0.000000e+00 793.0
5 TraesCS2B01G500500 chr2D 87.467 375 42 3 175 548 578940411 578940041 1.370000e-115 427.0
6 TraesCS2B01G500500 chr2D 91.453 234 15 3 2107 2335 578937875 578937642 3.100000e-82 316.0
7 TraesCS2B01G500500 chr2D 76.250 400 72 11 180 577 384249338 384249716 1.960000e-44 191.0
8 TraesCS2B01G500500 chr2D 86.667 120 11 4 17 135 578940665 578940550 1.560000e-25 128.0
9 TraesCS2B01G500500 chr2D 92.500 80 1 2 2048 2123 578937994 578937916 5.650000e-20 110.0
10 TraesCS2B01G500500 chr2A 93.497 1061 49 10 3370 4420 716488498 716487448 0.000000e+00 1559.0
11 TraesCS2B01G500500 chr2A 87.741 1403 87 28 590 1946 716491726 716490363 0.000000e+00 1559.0
12 TraesCS2B01G500500 chr2A 89.491 904 62 10 1975 2852 716490372 716489476 0.000000e+00 1112.0
13 TraesCS2B01G500500 chr2A 87.470 415 47 3 173 586 716492556 716492146 1.740000e-129 473.0
14 TraesCS2B01G500500 chr2A 87.320 347 30 7 2902 3245 716489087 716488752 8.380000e-103 385.0
15 TraesCS2B01G500500 chr2A 77.364 698 94 40 4616 5302 55933305 55933949 6.570000e-94 355.0
16 TraesCS2B01G500500 chr2A 94.667 75 4 0 3232 3306 716488709 716488635 3.380000e-22 117.0
17 TraesCS2B01G500500 chr2A 95.000 60 2 1 3304 3363 716488616 716488558 5.690000e-15 93.5
18 TraesCS2B01G500500 chr3D 81.884 690 84 27 4615 5286 77327241 77326575 1.310000e-150 544.0
19 TraesCS2B01G500500 chr3D 82.128 470 57 19 4616 5075 288048031 288047579 1.400000e-100 377.0
20 TraesCS2B01G500500 chr3B 81.157 674 92 23 4615 5269 123602139 123601482 4.770000e-140 508.0
21 TraesCS2B01G500500 chr1A 81.241 677 84 33 4644 5301 293739728 293740380 1.710000e-139 507.0
22 TraesCS2B01G500500 chr1A 74.153 236 44 16 3738 3967 212019232 212019456 1.230000e-11 82.4
23 TraesCS2B01G500500 chr4D 80.170 706 95 33 4616 5301 109325373 109324693 2.230000e-133 486.0
24 TraesCS2B01G500500 chr4D 79.525 337 50 11 4976 5300 485773045 485772716 6.960000e-54 222.0
25 TraesCS2B01G500500 chr1B 79.173 701 109 27 4617 5301 623621775 623622454 8.150000e-123 451.0
26 TraesCS2B01G500500 chr1B 81.401 414 63 9 173 577 282127463 282127055 5.150000e-85 326.0
27 TraesCS2B01G500500 chr1B 77.855 429 79 12 173 591 377962633 377963055 8.870000e-63 252.0
28 TraesCS2B01G500500 chr1B 74.222 225 43 14 3767 3985 263947732 263947517 4.430000e-11 80.5
29 TraesCS2B01G500500 chr5A 79.016 691 97 23 4623 5300 11037323 11036668 3.820000e-116 429.0
30 TraesCS2B01G500500 chr5A 81.548 168 28 2 1137 1301 537019060 537019227 9.320000e-28 135.0
31 TraesCS2B01G500500 chr6D 79.403 636 93 21 4615 5231 57032593 57031977 1.070000e-111 414.0
32 TraesCS2B01G500500 chr6A 78.764 631 98 25 4615 5230 71663690 71663081 1.800000e-104 390.0
33 TraesCS2B01G500500 chr6A 81.472 394 68 4 170 562 134222763 134223152 8.620000e-83 318.0
34 TraesCS2B01G500500 chr6A 74.822 421 92 12 170 585 521989460 521989871 1.530000e-40 178.0
35 TraesCS2B01G500500 chr6A 88.350 103 12 0 170 272 134209774 134209876 2.020000e-24 124.0
36 TraesCS2B01G500500 chr6A 91.071 56 5 0 174 229 129343728 129343673 5.730000e-10 76.8
37 TraesCS2B01G500500 chr5B 77.318 701 93 30 4615 5303 485998767 485999413 2.360000e-93 353.0
38 TraesCS2B01G500500 chr5B 76.435 662 129 22 3657 4306 708373463 708372817 3.080000e-87 333.0
39 TraesCS2B01G500500 chr5B 78.302 424 67 17 4891 5302 380649664 380650074 3.190000e-62 250.0
40 TraesCS2B01G500500 chr5B 78.589 397 59 21 4891 5274 380668496 380668879 6.910000e-59 239.0
41 TraesCS2B01G500500 chr5B 84.153 183 26 3 1132 1311 708376490 708376308 1.980000e-39 174.0
42 TraesCS2B01G500500 chr5B 81.818 187 33 1 170 355 381845523 381845709 7.160000e-34 156.0
43 TraesCS2B01G500500 chr5B 81.176 170 32 0 1138 1307 708351085 708350916 2.590000e-28 137.0
44 TraesCS2B01G500500 chr7A 77.306 683 95 37 4623 5286 13782081 13782722 1.100000e-91 348.0
45 TraesCS2B01G500500 chr7A 79.894 189 29 8 5101 5284 86102290 86102106 4.340000e-26 130.0
46 TraesCS2B01G500500 chr7A 100.000 29 0 0 2422 2450 119771944 119771972 3.000000e-03 54.7
47 TraesCS2B01G500500 chr3A 81.223 458 57 18 4625 5075 377647917 377647482 5.120000e-90 342.0
48 TraesCS2B01G500500 chr3A 74.091 220 55 2 174 393 57907982 57908199 7.360000e-14 89.8
49 TraesCS2B01G500500 chr4B 80.252 476 71 15 4623 5086 657241502 657241038 2.380000e-88 337.0
50 TraesCS2B01G500500 chr4B 84.118 170 27 0 1138 1307 6958285 6958116 1.190000e-36 165.0
51 TraesCS2B01G500500 chr4B 82.353 85 10 4 2341 2425 52404208 52404129 9.590000e-08 69.4
52 TraesCS2B01G500500 chr5D 75.267 655 149 10 3641 4290 564949225 564949871 3.120000e-77 300.0
53 TraesCS2B01G500500 chr5D 80.902 377 62 6 174 548 354841004 354841372 6.760000e-74 289.0
54 TraesCS2B01G500500 chr5D 85.792 183 23 3 1132 1311 564929342 564929524 1.960000e-44 191.0
55 TraesCS2B01G500500 chr5D 82.036 167 30 0 1138 1304 564944374 564944540 5.570000e-30 143.0
56 TraesCS2B01G500500 chr5D 95.122 41 2 0 169 209 27854495 27854535 1.240000e-06 65.8
57 TraesCS2B01G500500 chr4A 75.112 667 153 9 3641 4302 606400612 606401270 3.120000e-77 300.0
58 TraesCS2B01G500500 chr4A 85.030 167 25 0 1138 1304 599467644 599467810 2.560000e-38 171.0
59 TraesCS2B01G500500 chr4A 84.091 176 25 3 1132 1304 606370518 606370693 3.310000e-37 167.0
60 TraesCS2B01G500500 chr4A 81.212 165 31 0 1140 1304 606397640 606397804 3.350000e-27 134.0
61 TraesCS2B01G500500 chr4A 82.031 128 23 0 3417 3544 606373326 606373453 5.650000e-20 110.0
62 TraesCS2B01G500500 chr7D 78.275 313 62 6 173 482 1328722 1329031 4.220000e-46 196.0
63 TraesCS2B01G500500 chr7D 83.942 137 19 2 1 137 164729727 164729594 1.560000e-25 128.0
64 TraesCS2B01G500500 chr7D 80.702 114 20 1 2 113 384041186 384041299 2.650000e-13 87.9
65 TraesCS2B01G500500 chr7D 100.000 28 0 0 139 166 1328672 1328699 1.000000e-02 52.8
66 TraesCS2B01G500500 chr1D 74.667 225 42 14 3767 3985 190479971 190479756 9.520000e-13 86.1
67 TraesCS2B01G500500 chr1D 94.286 35 2 0 556 590 42976055 42976021 3.000000e-03 54.7
68 TraesCS2B01G500500 chr7B 100.000 28 0 0 1055 1082 276638364 276638391 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G500500 chr2B 695858147 695863482 5335 True 9854.000000 9854 100.000000 1 5336 1 chr2B.!!$R2 5335
1 TraesCS2B01G500500 chr2D 578935842 578940665 4823 True 684.142857 1965 89.934143 17 5035 7 chr2D.!!$R1 5018
2 TraesCS2B01G500500 chr2A 716487448 716492556 5108 True 756.928571 1559 90.740857 173 4420 7 chr2A.!!$R1 4247
3 TraesCS2B01G500500 chr2A 55933305 55933949 644 False 355.000000 355 77.364000 4616 5302 1 chr2A.!!$F1 686
4 TraesCS2B01G500500 chr3D 77326575 77327241 666 True 544.000000 544 81.884000 4615 5286 1 chr3D.!!$R1 671
5 TraesCS2B01G500500 chr3B 123601482 123602139 657 True 508.000000 508 81.157000 4615 5269 1 chr3B.!!$R1 654
6 TraesCS2B01G500500 chr1A 293739728 293740380 652 False 507.000000 507 81.241000 4644 5301 1 chr1A.!!$F2 657
7 TraesCS2B01G500500 chr4D 109324693 109325373 680 True 486.000000 486 80.170000 4616 5301 1 chr4D.!!$R1 685
8 TraesCS2B01G500500 chr1B 623621775 623622454 679 False 451.000000 451 79.173000 4617 5301 1 chr1B.!!$F2 684
9 TraesCS2B01G500500 chr5A 11036668 11037323 655 True 429.000000 429 79.016000 4623 5300 1 chr5A.!!$R1 677
10 TraesCS2B01G500500 chr6D 57031977 57032593 616 True 414.000000 414 79.403000 4615 5231 1 chr6D.!!$R1 616
11 TraesCS2B01G500500 chr6A 71663081 71663690 609 True 390.000000 390 78.764000 4615 5230 1 chr6A.!!$R1 615
12 TraesCS2B01G500500 chr5B 485998767 485999413 646 False 353.000000 353 77.318000 4615 5303 1 chr5B.!!$F4 688
13 TraesCS2B01G500500 chr5B 708372817 708376490 3673 True 253.500000 333 80.294000 1132 4306 2 chr5B.!!$R2 3174
14 TraesCS2B01G500500 chr7A 13782081 13782722 641 False 348.000000 348 77.306000 4623 5286 1 chr7A.!!$F1 663
15 TraesCS2B01G500500 chr5D 564949225 564949871 646 False 300.000000 300 75.267000 3641 4290 1 chr5D.!!$F5 649
16 TraesCS2B01G500500 chr4A 606397640 606401270 3630 False 217.000000 300 78.162000 1140 4302 2 chr4A.!!$F3 3162

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.031616 TTCAAAAAGGGTGGTGGGCT 60.032 50.0 0.00 0.0 0.00 5.19 F
151 235 0.034670 ATGGTGCCCTCTTGCTTCTC 60.035 55.0 0.00 0.0 0.00 2.87 F
619 1136 0.112606 TTTTGGTTGGGCCGGTCATA 59.887 50.0 9.07 0.0 41.21 2.15 F
2151 3017 0.038166 TTGCAGGTGAGGGATGTTCC 59.962 55.0 0.00 0.0 35.23 3.62 F
2860 5401 0.179000 AATGTAAGAGGCAGCGAGGG 59.821 55.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1111 1637 0.327591 CCCTTCTTCTCCTGCTGCTT 59.672 55.000 0.00 0.0 0.00 3.91 R
2128 2994 0.033796 CATCCCTCACCTGCAATGGT 60.034 55.000 0.00 0.0 41.77 3.55 R
2435 3508 0.462759 CAAGAGGGAAGGGCGATGAC 60.463 60.000 0.00 0.0 0.00 3.06 R
3285 7163 0.462759 GCTTAATGCGCCTCTCACCT 60.463 55.000 4.18 0.0 0.00 4.00 R
4496 9409 1.303236 TTGGATCAAGCACCACCCG 60.303 57.895 0.00 0.0 35.81 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.664016 GGAGATTGTTGCAGCACGTTG 60.664 52.381 1.37 0.00 0.00 4.10
30 31 1.264020 GAGATTGTTGCAGCACGTTGA 59.736 47.619 1.37 0.00 0.00 3.18
32 33 1.980844 GATTGTTGCAGCACGTTGATG 59.019 47.619 1.37 0.00 36.74 3.07
33 34 0.737804 TTGTTGCAGCACGTTGATGT 59.262 45.000 1.37 0.00 35.94 3.06
34 35 0.307453 TGTTGCAGCACGTTGATGTC 59.693 50.000 0.00 0.24 35.94 3.06
35 36 0.307453 GTTGCAGCACGTTGATGTCA 59.693 50.000 0.00 2.30 35.94 3.58
38 39 2.421619 TGCAGCACGTTGATGTCATTA 58.578 42.857 0.00 0.00 35.94 1.90
42 43 4.784394 GCAGCACGTTGATGTCATTATGAG 60.784 45.833 0.00 0.00 35.94 2.90
54 55 4.901250 TGTCATTATGAGACCTAGGCATGA 59.099 41.667 9.30 1.59 35.15 3.07
65 66 4.521146 ACCTAGGCATGACAATGAAAGAG 58.479 43.478 9.30 0.00 35.67 2.85
108 109 2.600470 TGCAACTGCTTCAAAAAGGG 57.400 45.000 2.95 0.00 42.66 3.95
115 116 0.392706 GCTTCAAAAAGGGTGGTGGG 59.607 55.000 0.00 0.00 32.79 4.61
116 117 0.392706 CTTCAAAAAGGGTGGTGGGC 59.607 55.000 0.00 0.00 0.00 5.36
117 118 0.031616 TTCAAAAAGGGTGGTGGGCT 60.032 50.000 0.00 0.00 0.00 5.19
120 121 1.211703 CAAAAAGGGTGGTGGGCTTTT 59.788 47.619 0.00 0.00 0.00 2.27
135 136 4.766970 TTTTTGCAACGGCCATGG 57.233 50.000 7.63 7.63 40.13 3.66
136 137 1.826024 TTTTTGCAACGGCCATGGT 59.174 47.368 14.67 0.00 40.13 3.55
151 235 0.034670 ATGGTGCCCTCTTGCTTCTC 60.035 55.000 0.00 0.00 0.00 2.87
169 253 3.167485 TCTCCAATTGCCATGAGCTTTT 58.833 40.909 0.00 0.00 44.23 2.27
206 306 1.170290 CCGGTCCAAACACCTTCACC 61.170 60.000 0.00 0.00 33.77 4.02
208 308 1.029681 GGTCCAAACACCTTCACCAC 58.970 55.000 0.00 0.00 33.08 4.16
216 316 4.602340 AACACCTTCACCACTGTAGTAG 57.398 45.455 0.00 0.00 0.00 2.57
222 322 5.003804 CCTTCACCACTGTAGTAGCAAATT 58.996 41.667 0.00 0.00 0.00 1.82
235 335 3.775261 AGCAAATTTGACCATGGCTTT 57.225 38.095 22.31 1.40 0.00 3.51
252 352 1.065401 CTTTGAGGCACGTGCTTTCAA 59.935 47.619 35.17 35.17 40.20 2.69
263 363 2.807967 CGTGCTTTCAAACATCCAGAGA 59.192 45.455 0.00 0.00 0.00 3.10
285 385 1.270305 ACTCGTCCCATGAATATGCGG 60.270 52.381 0.00 0.00 32.79 5.69
336 436 1.812324 CGGTGCACTTCTGGTAACCAA 60.812 52.381 17.98 0.00 35.02 3.67
343 443 4.461198 CACTTCTGGTAACCAAAGAACCT 58.539 43.478 0.00 0.00 34.23 3.50
350 450 5.414765 CTGGTAACCAAAGAACCTAATGGTC 59.585 44.000 0.00 0.00 45.15 4.02
425 526 3.498774 AGAGGTGATCAAACACTTGCT 57.501 42.857 0.00 0.00 40.22 3.91
429 530 0.592637 TGATCAAACACTTGCTGCCG 59.407 50.000 0.00 0.00 32.14 5.69
475 576 3.185651 GCTCGAATAGCGCATCAGA 57.814 52.632 11.47 0.89 42.53 3.27
484 585 1.136147 GCGCATCAGAGGCAAAGTG 59.864 57.895 8.00 0.00 0.00 3.16
488 589 1.081892 CATCAGAGGCAAAGTGGTCG 58.918 55.000 0.00 0.00 0.00 4.79
491 592 1.134220 TCAGAGGCAAAGTGGTCGTTT 60.134 47.619 0.00 0.00 0.00 3.60
503 604 1.418264 TGGTCGTTTCCCAACATCAGA 59.582 47.619 0.00 0.00 32.54 3.27
504 605 2.039746 TGGTCGTTTCCCAACATCAGAT 59.960 45.455 0.00 0.00 32.54 2.90
505 606 2.420022 GGTCGTTTCCCAACATCAGATG 59.580 50.000 9.03 9.03 32.54 2.90
519 620 1.153086 AGATGATGCCTTCGTGCCC 60.153 57.895 0.00 0.00 0.00 5.36
563 664 4.956700 TGTCCATTTGTTGAACCCTTGTAA 59.043 37.500 0.00 0.00 0.00 2.41
577 678 5.079643 ACCCTTGTAATTGAGAACATGCTT 58.920 37.500 0.00 0.00 0.00 3.91
580 681 6.071728 CCCTTGTAATTGAGAACATGCTTCTT 60.072 38.462 10.56 0.87 0.00 2.52
586 687 0.792640 AGAACATGCTTCTTCGCACG 59.207 50.000 0.00 0.00 43.61 5.34
588 689 1.230635 AACATGCTTCTTCGCACGCT 61.231 50.000 0.00 0.00 43.61 5.07
592 1109 3.181967 CTTCTTCGCACGCTCGGG 61.182 66.667 0.00 0.00 0.00 5.14
606 1123 0.328258 CTCGGGTGGAGGATTTTGGT 59.672 55.000 0.00 0.00 39.22 3.67
619 1136 0.112606 TTTTGGTTGGGCCGGTCATA 59.887 50.000 9.07 0.00 41.21 2.15
632 1149 3.208915 CGGTCATATCGGAGTCTGATG 57.791 52.381 22.48 10.09 0.00 3.07
635 1152 3.570125 GGTCATATCGGAGTCTGATGTGA 59.430 47.826 28.18 28.18 40.31 3.58
693 1210 0.547075 TTTCGGGTTGTGGGACTTCA 59.453 50.000 0.00 0.00 0.00 3.02
700 1217 2.031157 GGTTGTGGGACTTCAAACATCG 60.031 50.000 0.00 0.00 32.94 3.84
720 1237 3.400505 GGAACCGATCCGAACAAATTC 57.599 47.619 0.00 0.00 38.79 2.17
821 1340 3.200825 AGTTGCCCTTATGACAGCATACT 59.799 43.478 0.00 0.00 36.74 2.12
908 1431 2.039084 CCTTCCCTATGGCTCCATACAC 59.961 54.545 4.57 0.00 37.82 2.90
992 1518 1.275471 CCACGTACGCACTGACACAG 61.275 60.000 16.72 0.00 37.52 3.66
1013 1539 2.599848 GCCGAAACATGCATACATCGAC 60.600 50.000 21.66 11.49 32.87 4.20
1317 1846 7.883217 ACTTCATGGGTAAGTATCTATACGTG 58.117 38.462 0.00 0.00 38.28 4.49
1319 2062 5.771165 TCATGGGTAAGTATCTATACGTGCA 59.229 40.000 0.00 0.00 38.28 4.57
1425 2172 0.173029 CTGCACTGACAGAGCTCGAT 59.827 55.000 22.78 0.00 40.25 3.59
1426 2173 0.172127 TGCACTGACAGAGCTCGATC 59.828 55.000 22.78 10.55 32.86 3.69
1508 2262 1.866483 TTCCTCCATGTGCCATGCCT 61.866 55.000 9.04 0.00 0.00 4.75
1613 2369 2.137523 GCTGCCACTTGAAAATGGTTG 58.862 47.619 0.00 0.00 38.34 3.77
1694 2450 1.333619 GCTCGAAACATGTGTGGTTGT 59.666 47.619 0.00 0.00 34.78 3.32
1708 2464 5.236911 TGTGTGGTTGTAAATCGGTTAACTC 59.763 40.000 5.42 0.00 0.00 3.01
1709 2465 4.756135 TGTGGTTGTAAATCGGTTAACTCC 59.244 41.667 5.42 0.00 0.00 3.85
1734 2503 7.063456 CGTGCATGTTACTACTATAATTGTGC 58.937 38.462 0.00 0.00 0.00 4.57
1761 2534 1.647213 CACGCACGTACATGTACAGTC 59.353 52.381 30.17 18.36 35.87 3.51
1813 2590 3.851105 GCTGAAAACTGAGTGCACATGTC 60.851 47.826 21.04 8.71 0.00 3.06
1863 2656 7.467557 CAAACATTTGTACATCAACAAGCTT 57.532 32.000 0.00 0.00 40.29 3.74
1864 2657 7.339207 CAAACATTTGTACATCAACAAGCTTG 58.661 34.615 24.84 24.84 40.29 4.01
1865 2658 6.147864 ACATTTGTACATCAACAAGCTTGT 57.852 33.333 26.36 26.36 44.72 3.16
1867 2660 7.138736 ACATTTGTACATCAACAAGCTTGTAC 58.861 34.615 31.31 23.39 41.31 2.90
1869 2662 5.666969 TGTACATCAACAAGCTTGTACAC 57.333 39.130 31.31 20.56 45.59 2.90
1907 2700 6.929606 AGTGAGATGACCTTTAAACACTGTAC 59.070 38.462 0.00 0.00 36.29 2.90
1919 2718 0.780002 CACTGTACGTACGTTGCACC 59.220 55.000 27.92 10.09 0.00 5.01
1942 2741 5.942826 CCTCAAGCCTGTTTAATTTCTCTCT 59.057 40.000 0.00 0.00 0.00 3.10
1943 2742 6.093357 CCTCAAGCCTGTTTAATTTCTCTCTC 59.907 42.308 0.00 0.00 0.00 3.20
1944 2743 6.773638 TCAAGCCTGTTTAATTTCTCTCTCT 58.226 36.000 0.00 0.00 0.00 3.10
1945 2744 6.876257 TCAAGCCTGTTTAATTTCTCTCTCTC 59.124 38.462 0.00 0.00 0.00 3.20
1946 2745 6.619329 AGCCTGTTTAATTTCTCTCTCTCT 57.381 37.500 0.00 0.00 0.00 3.10
1947 2746 6.639563 AGCCTGTTTAATTTCTCTCTCTCTC 58.360 40.000 0.00 0.00 0.00 3.20
1948 2747 6.440328 AGCCTGTTTAATTTCTCTCTCTCTCT 59.560 38.462 0.00 0.00 0.00 3.10
1949 2748 6.756542 GCCTGTTTAATTTCTCTCTCTCTCTC 59.243 42.308 0.00 0.00 0.00 3.20
1950 2749 7.363793 GCCTGTTTAATTTCTCTCTCTCTCTCT 60.364 40.741 0.00 0.00 0.00 3.10
1951 2750 8.190784 CCTGTTTAATTTCTCTCTCTCTCTCTC 58.809 40.741 0.00 0.00 0.00 3.20
1952 2751 8.877864 TGTTTAATTTCTCTCTCTCTCTCTCT 57.122 34.615 0.00 0.00 0.00 3.10
1953 2752 8.956426 TGTTTAATTTCTCTCTCTCTCTCTCTC 58.044 37.037 0.00 0.00 0.00 3.20
1954 2753 9.178758 GTTTAATTTCTCTCTCTCTCTCTCTCT 57.821 37.037 0.00 0.00 0.00 3.10
1955 2754 8.737168 TTAATTTCTCTCTCTCTCTCTCTCTG 57.263 38.462 0.00 0.00 0.00 3.35
1956 2755 5.762179 TTTCTCTCTCTCTCTCTCTCTGT 57.238 43.478 0.00 0.00 0.00 3.41
1957 2756 5.344743 TTCTCTCTCTCTCTCTCTCTGTC 57.655 47.826 0.00 0.00 0.00 3.51
1958 2757 4.614475 TCTCTCTCTCTCTCTCTCTGTCT 58.386 47.826 0.00 0.00 0.00 3.41
1959 2758 4.646945 TCTCTCTCTCTCTCTCTCTGTCTC 59.353 50.000 0.00 0.00 0.00 3.36
1960 2759 4.614475 TCTCTCTCTCTCTCTCTGTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
1961 2760 4.646945 TCTCTCTCTCTCTCTCTGTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
1962 2761 4.614475 TCTCTCTCTCTCTCTGTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
1963 2762 4.646945 TCTCTCTCTCTCTCTGTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
1964 2763 4.614475 TCTCTCTCTCTCTGTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
1965 2764 4.646945 TCTCTCTCTCTCTGTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
1966 2765 4.614475 TCTCTCTCTCTGTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
1967 2766 4.646945 TCTCTCTCTCTGTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
1968 2767 4.614475 TCTCTCTCTGTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
1969 2768 4.646945 TCTCTCTCTGTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
1970 2769 4.614475 TCTCTCTGTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
1971 2770 4.646945 TCTCTCTGTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
1972 2771 4.614475 TCTCTGTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
1973 2772 4.646945 TCTCTGTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
1974 2773 4.614475 TCTGTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
1975 2774 4.646945 TCTGTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
1976 2775 4.614475 TGTCTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
1977 2776 4.646945 TGTCTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
1978 2777 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
1979 2778 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
2003 2802 4.624024 TCTCAATCGTTCATACAACGGTTC 59.376 41.667 2.48 0.00 44.11 3.62
2039 2840 0.804989 GCCAAACTTCGCTGCAGTAT 59.195 50.000 16.64 0.00 0.00 2.12
2134 3000 9.131791 ACCTAGCTAAACCAATTATAACCATTG 57.868 33.333 0.00 0.00 0.00 2.82
2151 3017 0.038166 TTGCAGGTGAGGGATGTTCC 59.962 55.000 0.00 0.00 35.23 3.62
2347 3219 4.282957 TCATTAAATGTCAAGGCAAGGCAA 59.717 37.500 0.00 0.00 0.00 4.52
2350 3222 3.874392 AATGTCAAGGCAAGGCAATAC 57.126 42.857 0.00 0.00 0.00 1.89
2368 3433 7.448469 AGGCAATACAAAGAACACAAGAAGTAT 59.552 33.333 0.00 0.00 0.00 2.12
2369 3434 8.082242 GGCAATACAAAGAACACAAGAAGTATT 58.918 33.333 0.00 0.00 32.83 1.89
2399 3464 2.454336 TCATGGTCCGTAGATCACCT 57.546 50.000 0.00 0.00 35.45 4.00
2428 3501 0.456221 TACTAGCGAGCTGAAGGCAC 59.544 55.000 7.99 0.00 44.79 5.01
2435 3508 3.414700 GCTGAAGGCACGTCACCG 61.415 66.667 0.00 0.00 42.83 4.94
2457 3530 1.341156 ATCGCCCTTCCCTCTTGGAG 61.341 60.000 0.00 0.00 46.24 3.86
2496 3569 7.012421 AGACTTTATCCAAATTATCTCGGCAAC 59.988 37.037 0.00 0.00 0.00 4.17
2517 3590 5.720371 ACCACATTTGCTAATGCTTTGTA 57.280 34.783 18.92 0.00 44.05 2.41
2521 3594 6.256321 CCACATTTGCTAATGCTTTGTATTCC 59.744 38.462 18.92 0.00 44.05 3.01
2596 3669 7.308229 CCAATGAGATTCGACCCAAGAATATTC 60.308 40.741 7.41 7.41 38.32 1.75
2606 3679 6.598064 CGACCCAAGAATATTCCAAAACTACT 59.402 38.462 11.92 0.00 0.00 2.57
2615 3688 9.788960 GAATATTCCAAAACTACTTGTTGATCC 57.211 33.333 3.92 0.00 39.13 3.36
2665 4169 2.691011 TGGCAAAGAAACCACTAACCAC 59.309 45.455 0.00 0.00 0.00 4.16
2697 5233 8.288689 AGAAGCCTTTTACAAAGTTAGTTCAA 57.711 30.769 0.00 0.00 0.00 2.69
2714 5250 1.843851 TCAAGGTCAACTGTTCCCTGT 59.156 47.619 8.59 0.00 0.00 4.00
2715 5251 2.241176 TCAAGGTCAACTGTTCCCTGTT 59.759 45.455 8.59 0.00 33.52 3.16
2716 5252 2.618709 CAAGGTCAACTGTTCCCTGTTC 59.381 50.000 8.59 0.00 31.18 3.18
2718 5254 1.605753 GTCAACTGTTCCCTGTTCCC 58.394 55.000 0.00 0.00 31.18 3.97
2721 5257 2.637872 TCAACTGTTCCCTGTTCCCTAG 59.362 50.000 0.00 0.00 31.18 3.02
2723 5259 0.984230 CTGTTCCCTGTTCCCTAGCA 59.016 55.000 0.00 0.00 0.00 3.49
2724 5260 1.561542 CTGTTCCCTGTTCCCTAGCAT 59.438 52.381 0.00 0.00 0.00 3.79
2725 5261 2.771943 CTGTTCCCTGTTCCCTAGCATA 59.228 50.000 0.00 0.00 0.00 3.14
2726 5262 3.392616 CTGTTCCCTGTTCCCTAGCATAT 59.607 47.826 0.00 0.00 0.00 1.78
2727 5263 3.391296 TGTTCCCTGTTCCCTAGCATATC 59.609 47.826 0.00 0.00 0.00 1.63
2728 5264 3.637821 TCCCTGTTCCCTAGCATATCT 57.362 47.619 0.00 0.00 0.00 1.98
2756 5292 5.160607 AGGTAATTGTCCGATGACTTTCA 57.839 39.130 0.00 0.00 42.28 2.69
2787 5323 4.024387 CGTGCAAGTACCACACAACTTTAT 60.024 41.667 10.14 0.00 33.72 1.40
2792 5328 6.582295 GCAAGTACCACACAACTTTATTGATG 59.418 38.462 0.00 0.00 33.72 3.07
2798 5334 7.209475 ACCACACAACTTTATTGATGGAAAAG 58.791 34.615 16.38 0.00 36.51 2.27
2801 5337 7.224362 CACACAACTTTATTGATGGAAAAGCAA 59.776 33.333 0.00 0.00 38.83 3.91
2805 5341 9.815936 CAACTTTATTGATGGAAAAGCAATTTC 57.184 29.630 6.48 6.48 42.18 2.17
2829 5370 0.827368 CTAGTCAGAAGACCCCAGCC 59.173 60.000 0.00 0.00 46.15 4.85
2855 5396 2.421424 CCTCAACAATGTAAGAGGCAGC 59.579 50.000 17.85 0.00 40.98 5.25
2856 5397 2.076100 TCAACAATGTAAGAGGCAGCG 58.924 47.619 0.00 0.00 0.00 5.18
2857 5398 2.076100 CAACAATGTAAGAGGCAGCGA 58.924 47.619 0.00 0.00 0.00 4.93
2858 5399 2.015736 ACAATGTAAGAGGCAGCGAG 57.984 50.000 0.00 0.00 0.00 5.03
2859 5400 1.293924 CAATGTAAGAGGCAGCGAGG 58.706 55.000 0.00 0.00 0.00 4.63
2860 5401 0.179000 AATGTAAGAGGCAGCGAGGG 59.821 55.000 0.00 0.00 0.00 4.30
2861 5402 1.690219 ATGTAAGAGGCAGCGAGGGG 61.690 60.000 0.00 0.00 0.00 4.79
2862 5403 2.764128 TAAGAGGCAGCGAGGGGG 60.764 66.667 0.00 0.00 0.00 5.40
2880 5421 2.754254 GGGGGTCAAACCATCGGC 60.754 66.667 0.00 0.00 41.02 5.54
2881 5422 2.034999 GGGGTCAAACCATCGGCA 59.965 61.111 0.00 0.00 41.02 5.69
2882 5423 1.379843 GGGGTCAAACCATCGGCAT 60.380 57.895 0.00 0.00 41.02 4.40
2883 5424 1.666209 GGGGTCAAACCATCGGCATG 61.666 60.000 0.00 0.00 41.02 4.06
2884 5425 1.139520 GGTCAAACCATCGGCATGC 59.860 57.895 9.90 9.90 38.42 4.06
2885 5426 1.594194 GGTCAAACCATCGGCATGCA 61.594 55.000 21.36 0.00 38.42 3.96
2886 5427 0.456653 GTCAAACCATCGGCATGCAC 60.457 55.000 21.36 8.08 0.00 4.57
2887 5428 1.153784 CAAACCATCGGCATGCACC 60.154 57.895 21.36 1.35 0.00 5.01
2895 5436 3.443045 GGCATGCACCGACCAAGG 61.443 66.667 21.36 0.00 37.30 3.61
2896 5437 3.443045 GCATGCACCGACCAAGGG 61.443 66.667 14.21 0.00 35.02 3.95
2897 5438 2.034066 CATGCACCGACCAAGGGT 59.966 61.111 0.00 0.00 39.44 4.34
2946 5827 1.221021 GCCTAGGTGAAAGGGACGG 59.779 63.158 11.31 0.00 34.46 4.79
2948 5829 1.153628 CTAGGTGAAAGGGACGGCG 60.154 63.158 4.80 4.80 0.00 6.46
2953 5834 2.513897 GAAAGGGACGGCGGGATG 60.514 66.667 13.24 0.00 0.00 3.51
2964 5845 2.888447 GCGGGATGGGGATGAGAGG 61.888 68.421 0.00 0.00 0.00 3.69
2967 5848 1.849823 GGATGGGGATGAGAGGGGG 60.850 68.421 0.00 0.00 0.00 5.40
2982 5863 1.685820 GGGGTGGGACAAGAGGAAG 59.314 63.158 0.00 0.00 44.16 3.46
3011 5892 2.282110 CCGGTGTTGGTGGATGCA 60.282 61.111 0.00 0.00 0.00 3.96
3022 5903 1.895131 GGTGGATGCAGGTTTCATGTT 59.105 47.619 0.00 0.00 0.00 2.71
3026 5907 2.353011 GGATGCAGGTTTCATGTTGTGG 60.353 50.000 0.00 0.00 0.00 4.17
3030 5911 2.927871 GCAGGTTTCATGTTGTGGCATC 60.928 50.000 0.00 0.00 0.00 3.91
3031 5912 1.895131 AGGTTTCATGTTGTGGCATCC 59.105 47.619 0.00 0.00 0.00 3.51
3035 5916 0.994247 TCATGTTGTGGCATCCCTCT 59.006 50.000 0.00 0.00 0.00 3.69
3097 6091 9.418045 CACCACTAATTACCTTTAACCAATTTG 57.582 33.333 0.00 0.00 0.00 2.32
3126 6120 6.598850 TCAATTCAATCACCAATCGATCTCAA 59.401 34.615 0.00 0.00 0.00 3.02
3127 6121 7.121020 TCAATTCAATCACCAATCGATCTCAAA 59.879 33.333 0.00 0.00 0.00 2.69
3225 7052 9.690913 TTTTAGACTGCTAGGTAATACAGTAGA 57.309 33.333 3.59 0.00 43.16 2.59
3227 7054 9.863650 TTAGACTGCTAGGTAATACAGTAGAAT 57.136 33.333 3.59 0.00 43.16 2.40
3281 7159 3.830192 GCTTTGGCAGATGGCGGG 61.830 66.667 1.68 0.00 46.16 6.13
3285 7163 2.705312 TTTGGCAGATGGCGGGTGAA 62.705 55.000 1.68 0.00 46.16 3.18
3332 7231 1.339055 CCATGGGATTGTCGTCACAGT 60.339 52.381 2.85 0.00 34.49 3.55
3340 7239 4.499040 GGATTGTCGTCACAGTTGTTTTTG 59.501 41.667 0.00 0.00 32.71 2.44
3430 8273 3.023832 CGAATTAATTTCAGCCCAGGGT 58.976 45.455 7.55 0.00 33.66 4.34
3446 8289 3.074412 CAGGGTCTTAACGTGAAGCAAT 58.926 45.455 7.89 0.00 0.00 3.56
3572 8415 7.876068 TCATCGTGGTAACTATTCTTTTCTGTT 59.124 33.333 0.00 0.00 37.61 3.16
3604 8484 1.002366 CGTGTGCAAGCTAGTGATCC 58.998 55.000 0.00 0.00 0.00 3.36
3606 8486 2.636830 GTGTGCAAGCTAGTGATCCAT 58.363 47.619 0.00 0.00 0.00 3.41
3616 8496 9.775854 GCAAGCTAGTGATCCATATATCATATT 57.224 33.333 0.00 0.00 38.13 1.28
3873 8781 2.182030 GGCGTCGAGTCCTTCCTG 59.818 66.667 0.00 0.00 0.00 3.86
4337 9248 1.338579 GCAGTTCCTGAACCTCTGAGG 60.339 57.143 22.00 22.00 42.06 3.86
4363 9274 8.749499 GCTGCATCATTTATATTCTTGTGTTTC 58.251 33.333 0.00 0.00 0.00 2.78
4378 9291 7.946207 TCTTGTGTTTCCAAAGCATTACATTA 58.054 30.769 0.00 0.00 0.00 1.90
4433 9346 0.532115 GCCAAAAACAGATCGGCCAT 59.468 50.000 2.24 0.00 36.73 4.40
4449 9362 3.709633 ATGCCGAGCTGCAGGTGA 61.710 61.111 25.60 4.51 45.93 4.02
4450 9363 3.040206 ATGCCGAGCTGCAGGTGAT 62.040 57.895 25.60 6.81 45.93 3.06
4451 9364 2.437359 GCCGAGCTGCAGGTGATT 60.437 61.111 25.60 0.00 0.00 2.57
4452 9365 2.467826 GCCGAGCTGCAGGTGATTC 61.468 63.158 25.60 7.77 0.00 2.52
4453 9366 1.078918 CCGAGCTGCAGGTGATTCA 60.079 57.895 25.60 0.00 0.00 2.57
4454 9367 1.088340 CCGAGCTGCAGGTGATTCAG 61.088 60.000 25.60 7.09 0.00 3.02
4455 9368 0.390866 CGAGCTGCAGGTGATTCAGT 60.391 55.000 25.60 0.00 0.00 3.41
4456 9369 1.085091 GAGCTGCAGGTGATTCAGTG 58.915 55.000 25.60 0.00 0.00 3.66
4457 9370 0.399454 AGCTGCAGGTGATTCAGTGT 59.601 50.000 19.45 0.00 0.00 3.55
4458 9371 0.520404 GCTGCAGGTGATTCAGTGTG 59.480 55.000 17.12 0.00 0.00 3.82
4459 9372 1.888215 CTGCAGGTGATTCAGTGTGT 58.112 50.000 5.57 0.00 0.00 3.72
4460 9373 1.534163 CTGCAGGTGATTCAGTGTGTG 59.466 52.381 5.57 0.00 0.00 3.82
4461 9374 1.140652 TGCAGGTGATTCAGTGTGTGA 59.859 47.619 0.00 0.00 0.00 3.58
4544 9457 7.707624 ATTGTCAACAGAAATGTATGTGGAT 57.292 32.000 0.00 0.00 31.63 3.41
4548 9461 9.325198 TGTCAACAGAAATGTATGTGGATATAC 57.675 33.333 0.00 0.00 31.63 1.47
4549 9462 8.487970 GTCAACAGAAATGTATGTGGATATACG 58.512 37.037 0.00 0.00 31.63 3.06
4557 9470 7.946655 ATGTATGTGGATATACGAAGTTGTG 57.053 36.000 0.00 0.00 37.78 3.33
4576 9489 3.244284 TGTGTATCCACTAGCAAAACGGT 60.244 43.478 0.00 0.00 42.34 4.83
4578 9491 2.109425 ATCCACTAGCAAAACGGTCC 57.891 50.000 0.00 0.00 0.00 4.46
4583 9496 1.225376 CTAGCAAAACGGTCCGTGCA 61.225 55.000 19.67 7.38 39.99 4.57
4591 9504 2.902419 CGGTCCGTGCATTGCAACA 61.902 57.895 13.94 0.00 41.47 3.33
4592 9505 1.586028 GGTCCGTGCATTGCAACAT 59.414 52.632 13.94 0.00 41.47 2.71
4593 9506 0.733566 GGTCCGTGCATTGCAACATG 60.734 55.000 13.94 1.34 41.47 3.21
4594 9507 1.080637 TCCGTGCATTGCAACATGC 60.081 52.632 13.94 16.41 41.47 4.06
4598 9511 1.352114 GTGCATTGCAACATGCGATT 58.648 45.000 13.94 0.00 44.73 3.34
4599 9512 1.727880 GTGCATTGCAACATGCGATTT 59.272 42.857 13.94 0.00 44.73 2.17
4600 9513 2.158058 GTGCATTGCAACATGCGATTTT 59.842 40.909 13.94 0.00 44.73 1.82
4601 9514 2.806818 TGCATTGCAACATGCGATTTTT 59.193 36.364 17.68 0.00 44.73 1.94
4819 9740 9.803315 ATCATGAACAATTTCTGAATTCATGAG 57.197 29.630 30.55 16.73 41.81 2.90
4906 9834 6.369065 AGGTGAACATTTCTAGAATTGACGAC 59.631 38.462 26.35 18.88 0.00 4.34
4940 9878 8.195436 TGGAAATCGTTTGGTGTAACAATTTTA 58.805 29.630 0.00 0.00 39.98 1.52
5066 10008 8.855279 CAAGTCACGAACTGTTTTTGAATTTTA 58.145 29.630 12.44 0.00 38.58 1.52
5067 10009 8.614994 AGTCACGAACTGTTTTTGAATTTTAG 57.385 30.769 6.60 0.00 36.65 1.85
5068 10010 8.241367 AGTCACGAACTGTTTTTGAATTTTAGT 58.759 29.630 6.60 0.00 36.65 2.24
5111 10068 6.601741 TGAATTGGCAAAATTCTGTTCAAC 57.398 33.333 19.15 0.00 37.50 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.602878 GTGCTGCAACAATCTCCATTG 58.397 47.619 2.77 0.00 44.57 2.82
6 7 1.200716 CGTGCTGCAACAATCTCCATT 59.799 47.619 2.77 0.00 0.00 3.16
7 8 0.806868 CGTGCTGCAACAATCTCCAT 59.193 50.000 2.77 0.00 0.00 3.41
8 9 0.534877 ACGTGCTGCAACAATCTCCA 60.535 50.000 2.77 0.00 0.00 3.86
9 10 0.593128 AACGTGCTGCAACAATCTCC 59.407 50.000 2.77 0.00 0.00 3.71
10 11 1.264020 TCAACGTGCTGCAACAATCTC 59.736 47.619 2.77 0.00 0.00 2.75
11 12 1.308047 TCAACGTGCTGCAACAATCT 58.692 45.000 2.77 0.00 0.00 2.40
12 13 1.980844 CATCAACGTGCTGCAACAATC 59.019 47.619 2.77 0.00 0.00 2.67
13 14 1.337703 ACATCAACGTGCTGCAACAAT 59.662 42.857 2.77 0.00 0.00 2.71
14 15 0.737804 ACATCAACGTGCTGCAACAA 59.262 45.000 2.77 0.00 0.00 2.83
15 16 0.307453 GACATCAACGTGCTGCAACA 59.693 50.000 2.77 0.00 0.00 3.33
22 23 4.260375 GGTCTCATAATGACATCAACGTGC 60.260 45.833 0.00 0.00 36.26 5.34
29 30 5.474578 TGCCTAGGTCTCATAATGACATC 57.525 43.478 11.31 0.00 36.26 3.06
30 31 5.545335 TCATGCCTAGGTCTCATAATGACAT 59.455 40.000 11.31 0.00 36.26 3.06
32 33 5.221521 TGTCATGCCTAGGTCTCATAATGAC 60.222 44.000 11.31 16.28 41.79 3.06
33 34 4.901250 TGTCATGCCTAGGTCTCATAATGA 59.099 41.667 11.31 6.15 0.00 2.57
34 35 5.219343 TGTCATGCCTAGGTCTCATAATG 57.781 43.478 11.31 4.02 0.00 1.90
35 36 5.894298 TTGTCATGCCTAGGTCTCATAAT 57.106 39.130 11.31 0.00 0.00 1.28
38 39 3.713248 TCATTGTCATGCCTAGGTCTCAT 59.287 43.478 11.31 2.37 0.00 2.90
42 43 4.517285 TCTTTCATTGTCATGCCTAGGTC 58.483 43.478 11.31 3.32 0.00 3.85
54 55 6.906157 ATGGATTTGACACTCTTTCATTGT 57.094 33.333 0.00 0.00 0.00 2.71
65 66 5.185454 TCACATGACCTATGGATTTGACAC 58.815 41.667 0.00 0.00 41.25 3.67
72 73 4.139786 GTTGCATCACATGACCTATGGAT 58.860 43.478 0.00 0.00 41.25 3.41
103 104 3.333009 AAAAAGCCCACCACCCTTT 57.667 47.368 0.00 0.00 0.00 3.11
120 121 2.733301 CACCATGGCCGTTGCAAA 59.267 55.556 13.04 0.00 40.13 3.68
135 136 0.250901 TTGGAGAAGCAAGAGGGCAC 60.251 55.000 0.00 0.00 35.83 5.01
136 137 0.700564 ATTGGAGAAGCAAGAGGGCA 59.299 50.000 0.00 0.00 35.83 5.36
169 253 3.640029 ACCGGAGTACTTGAGAGAACAAA 59.360 43.478 9.46 0.00 0.00 2.83
206 306 5.940192 TGGTCAAATTTGCTACTACAGTG 57.060 39.130 13.54 0.00 0.00 3.66
208 308 5.677091 GCCATGGTCAAATTTGCTACTACAG 60.677 44.000 14.67 2.58 0.00 2.74
216 316 3.401182 TCAAAGCCATGGTCAAATTTGC 58.599 40.909 14.67 8.47 0.00 3.68
222 322 0.178967 TGCCTCAAAGCCATGGTCAA 60.179 50.000 14.67 0.00 0.00 3.18
235 335 0.380378 GTTTGAAAGCACGTGCCTCA 59.620 50.000 35.51 31.93 43.38 3.86
242 342 2.807967 TCTCTGGATGTTTGAAAGCACG 59.192 45.455 0.00 0.00 0.00 5.34
252 352 2.959707 GGGACGAGTATCTCTGGATGTT 59.040 50.000 0.00 0.00 33.71 2.71
263 363 3.368427 CCGCATATTCATGGGACGAGTAT 60.368 47.826 3.50 0.00 45.53 2.12
285 385 0.535102 ATGCTTACCTATGGCACGGC 60.535 55.000 4.68 0.00 38.83 5.68
343 443 1.858910 AGGATGCCATTGGGACCATTA 59.141 47.619 14.84 0.00 35.59 1.90
350 450 2.148446 TGAAGAAGGATGCCATTGGG 57.852 50.000 4.53 0.00 37.18 4.12
425 526 1.202087 CGTTATTTTTCGGATGCGGCA 60.202 47.619 4.58 4.58 0.00 5.69
435 536 5.872617 AGCCCTATTTTTGCCGTTATTTTTC 59.127 36.000 0.00 0.00 0.00 2.29
467 568 0.957395 ACCACTTTGCCTCTGATGCG 60.957 55.000 0.57 0.00 0.00 4.73
473 574 1.594331 GAAACGACCACTTTGCCTCT 58.406 50.000 0.00 0.00 0.00 3.69
475 576 0.822121 GGGAAACGACCACTTTGCCT 60.822 55.000 0.00 0.00 36.45 4.75
484 585 2.178912 TCTGATGTTGGGAAACGACC 57.821 50.000 0.00 0.00 32.06 4.79
503 604 2.514592 CGGGCACGAAGGCATCAT 60.515 61.111 0.00 0.00 46.44 2.45
519 620 2.139917 TCAAGTGTTGAACCGGAATCG 58.860 47.619 9.46 0.00 36.59 3.34
537 638 3.843422 AGGGTTCAACAAATGGACATCA 58.157 40.909 0.00 0.00 39.54 3.07
563 664 3.076621 TGCGAAGAAGCATGTTCTCAAT 58.923 40.909 9.89 0.00 42.92 2.57
577 678 4.717629 CACCCGAGCGTGCGAAGA 62.718 66.667 0.00 0.00 0.00 2.87
586 687 1.032114 CCAAAATCCTCCACCCGAGC 61.032 60.000 0.00 0.00 37.27 5.03
588 689 0.774908 AACCAAAATCCTCCACCCGA 59.225 50.000 0.00 0.00 0.00 5.14
592 1109 0.608130 GCCCAACCAAAATCCTCCAC 59.392 55.000 0.00 0.00 0.00 4.02
598 1115 1.182385 TGACCGGCCCAACCAAAATC 61.182 55.000 0.00 0.00 39.03 2.17
606 1123 1.754380 CTCCGATATGACCGGCCCAA 61.754 60.000 0.00 0.00 46.10 4.12
619 1136 2.627221 CTCCATCACATCAGACTCCGAT 59.373 50.000 0.00 0.00 0.00 4.18
631 1148 0.543277 GCATCTGGACCTCCATCACA 59.457 55.000 0.00 0.00 46.46 3.58
632 1149 0.179034 GGCATCTGGACCTCCATCAC 60.179 60.000 0.00 0.00 46.46 3.06
635 1152 3.666122 GGGCATCTGGACCTCCAT 58.334 61.111 0.00 0.00 46.46 3.41
700 1217 2.222953 CGAATTTGTTCGGATCGGTTCC 60.223 50.000 2.83 0.00 40.48 3.62
776 1295 1.732941 ACGCTATTCACCAAATCGCA 58.267 45.000 0.00 0.00 36.17 5.10
892 1415 2.175878 GCTGTGTATGGAGCCATAGG 57.824 55.000 9.41 2.88 39.29 2.57
908 1431 4.946478 ATAGGAGTACTGCTAAAGGCTG 57.054 45.455 25.50 0.00 44.00 4.85
992 1518 1.597195 TCGATGTATGCATGTTTCGGC 59.403 47.619 19.88 0.00 35.07 5.54
1013 1539 1.227089 CAGGTCCTTCTCATCGCCG 60.227 63.158 0.00 0.00 0.00 6.46
1023 1549 4.021925 GCCGTCCTGCAGGTCCTT 62.022 66.667 31.58 0.00 36.34 3.36
1109 1635 0.803740 CTTCTTCTCCTGCTGCTTGC 59.196 55.000 0.00 0.00 43.25 4.01
1111 1637 0.327591 CCCTTCTTCTCCTGCTGCTT 59.672 55.000 0.00 0.00 0.00 3.91
1319 2062 1.391144 GGAAAACGCTTACGCACGTAT 59.609 47.619 3.43 0.00 45.53 3.06
1330 2073 5.180680 GGTATACACAGAAAAGGAAAACGCT 59.819 40.000 5.01 0.00 0.00 5.07
1425 2172 4.075682 CTGGCTAGATTATCCTCTCACGA 58.924 47.826 0.00 0.00 0.00 4.35
1426 2173 3.823873 ACTGGCTAGATTATCCTCTCACG 59.176 47.826 3.17 0.00 0.00 4.35
1478 2232 2.922283 ACATGGAGGAATCAAGACCCTT 59.078 45.455 0.00 0.00 0.00 3.95
1508 2262 3.904800 TTTCCATGTATGCCTCGAGAA 57.095 42.857 15.71 1.50 0.00 2.87
1551 2305 1.553704 AGACACCAAGGTATTCGTCCC 59.446 52.381 4.40 0.00 0.00 4.46
1613 2369 3.749665 ATCAGGAGAAGATGCTACAGC 57.250 47.619 0.00 0.00 42.50 4.40
1672 2428 1.896220 ACCACACATGTTTCGAGCAT 58.104 45.000 0.00 0.00 0.00 3.79
1708 2464 7.564128 CACAATTATAGTAGTAACATGCACGG 58.436 38.462 0.00 0.00 0.00 4.94
1709 2465 7.063456 GCACAATTATAGTAGTAACATGCACG 58.937 38.462 0.00 0.00 0.00 5.34
1734 2503 1.136639 CATGTACGTGCGTGTTCACTG 60.137 52.381 16.69 0.00 34.92 3.66
1761 2534 2.159057 AGCAACTTTTTCAGCAACTGGG 60.159 45.455 0.00 0.00 31.51 4.45
1813 2590 2.282180 CCGTGGGAGGTTGGTTGG 60.282 66.667 0.00 0.00 0.00 3.77
1855 2648 6.709018 AAAAGTATGGTGTACAAGCTTGTT 57.291 33.333 35.20 19.47 42.35 2.83
1857 2650 6.734137 TGAAAAAGTATGGTGTACAAGCTTG 58.266 36.000 24.84 24.84 30.84 4.01
1858 2651 6.952773 TGAAAAAGTATGGTGTACAAGCTT 57.047 33.333 0.00 0.00 0.00 3.74
1859 2652 6.546034 ACTTGAAAAAGTATGGTGTACAAGCT 59.454 34.615 0.00 0.00 36.65 3.74
1860 2653 6.636850 CACTTGAAAAAGTATGGTGTACAAGC 59.363 38.462 0.00 0.00 36.65 4.01
1863 2656 7.276658 TCTCACTTGAAAAAGTATGGTGTACA 58.723 34.615 0.00 0.00 0.00 2.90
1864 2657 7.724305 TCTCACTTGAAAAAGTATGGTGTAC 57.276 36.000 0.00 0.00 0.00 2.90
1865 2658 8.154203 TCATCTCACTTGAAAAAGTATGGTGTA 58.846 33.333 0.00 0.00 0.00 2.90
1867 2660 7.301054 GTCATCTCACTTGAAAAAGTATGGTG 58.699 38.462 0.00 0.00 0.00 4.17
1869 2662 6.656693 AGGTCATCTCACTTGAAAAAGTATGG 59.343 38.462 0.00 0.00 0.00 2.74
1907 2700 1.491563 GCTTGAGGTGCAACGTACG 59.508 57.895 15.01 15.01 38.12 3.67
1919 2718 6.878389 AGAGAGAGAAATTAAACAGGCTTGAG 59.122 38.462 1.40 0.00 0.00 3.02
1942 2741 4.614475 AGAGAGAGACAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
1943 2742 4.648762 AGAGAGAGAGACAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
1944 2743 4.614475 AGAGAGAGAGACAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
1945 2744 4.648762 AGAGAGAGAGAGACAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
1946 2745 4.614475 AGAGAGAGAGAGACAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
1947 2746 4.648762 AGAGAGAGAGAGAGACAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
1948 2747 4.614475 AGAGAGAGAGAGAGACAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
1949 2748 4.648762 AGAGAGAGAGAGAGAGACAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
1950 2749 4.614475 AGAGAGAGAGAGAGAGACAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
1951 2750 4.648762 AGAGAGAGAGAGAGAGAGACAGAG 59.351 50.000 0.00 0.00 0.00 3.35
1952 2751 4.614475 AGAGAGAGAGAGAGAGAGACAGA 58.386 47.826 0.00 0.00 0.00 3.41
1953 2752 4.648762 AGAGAGAGAGAGAGAGAGAGACAG 59.351 50.000 0.00 0.00 0.00 3.51
1954 2753 4.614475 AGAGAGAGAGAGAGAGAGAGACA 58.386 47.826 0.00 0.00 0.00 3.41
1955 2754 4.892934 AGAGAGAGAGAGAGAGAGAGAGAC 59.107 50.000 0.00 0.00 0.00 3.36
1956 2755 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1957 2756 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1958 2757 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1959 2758 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1960 2759 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1961 2760 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
1962 2761 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
1963 2762 5.604758 TTGAGAGAGAGAGAGAGAGAGAG 57.395 47.826 0.00 0.00 0.00 3.20
1964 2763 5.221322 CGATTGAGAGAGAGAGAGAGAGAGA 60.221 48.000 0.00 0.00 0.00 3.10
1965 2764 4.987285 CGATTGAGAGAGAGAGAGAGAGAG 59.013 50.000 0.00 0.00 0.00 3.20
1966 2765 4.405680 ACGATTGAGAGAGAGAGAGAGAGA 59.594 45.833 0.00 0.00 0.00 3.10
1967 2766 4.697514 ACGATTGAGAGAGAGAGAGAGAG 58.302 47.826 0.00 0.00 0.00 3.20
1968 2767 4.753516 ACGATTGAGAGAGAGAGAGAGA 57.246 45.455 0.00 0.00 0.00 3.10
1969 2768 4.875536 TGAACGATTGAGAGAGAGAGAGAG 59.124 45.833 0.00 0.00 0.00 3.20
1970 2769 4.837972 TGAACGATTGAGAGAGAGAGAGA 58.162 43.478 0.00 0.00 0.00 3.10
1971 2770 5.756195 ATGAACGATTGAGAGAGAGAGAG 57.244 43.478 0.00 0.00 0.00 3.20
1972 2771 6.116126 TGTATGAACGATTGAGAGAGAGAGA 58.884 40.000 0.00 0.00 0.00 3.10
1973 2772 6.370433 TGTATGAACGATTGAGAGAGAGAG 57.630 41.667 0.00 0.00 0.00 3.20
1974 2773 6.556212 GTTGTATGAACGATTGAGAGAGAGA 58.444 40.000 0.00 0.00 0.00 3.10
1975 2774 5.453909 CGTTGTATGAACGATTGAGAGAGAG 59.546 44.000 6.07 0.00 45.64 3.20
1976 2775 5.332707 CGTTGTATGAACGATTGAGAGAGA 58.667 41.667 6.07 0.00 45.64 3.10
1977 2776 4.500837 CCGTTGTATGAACGATTGAGAGAG 59.499 45.833 12.07 0.00 45.64 3.20
1978 2777 4.082408 ACCGTTGTATGAACGATTGAGAGA 60.082 41.667 12.07 0.00 45.64 3.10
1979 2778 4.174009 ACCGTTGTATGAACGATTGAGAG 58.826 43.478 12.07 0.00 45.64 3.20
2003 2802 6.821388 AGTTTGGCTGGATGTAGAATACTAG 58.179 40.000 0.00 0.00 43.54 2.57
2128 2994 0.033796 CATCCCTCACCTGCAATGGT 60.034 55.000 0.00 0.00 41.77 3.55
2134 3000 4.645809 GGAACATCCCTCACCTGC 57.354 61.111 0.00 0.00 0.00 4.85
2151 3017 9.618890 TTCTATTTTGTTAGAGAGATGATTGGG 57.381 33.333 0.00 0.00 30.20 4.12
2331 3203 2.806434 TGTATTGCCTTGCCTTGACAT 58.194 42.857 0.00 0.00 0.00 3.06
2375 3440 4.038763 GGTGATCTACGGACCATGATGTAA 59.961 45.833 0.00 0.00 0.00 2.41
2376 3441 3.572682 GGTGATCTACGGACCATGATGTA 59.427 47.826 0.00 0.00 0.00 2.29
2382 3447 2.621998 CGTTAGGTGATCTACGGACCAT 59.378 50.000 2.33 0.00 31.61 3.55
2399 3464 3.247886 CAGCTCGCTAGTAGTCATCGTTA 59.752 47.826 0.00 0.00 0.00 3.18
2435 3508 0.462759 CAAGAGGGAAGGGCGATGAC 60.463 60.000 0.00 0.00 0.00 3.06
2478 3551 3.013921 GTGGTTGCCGAGATAATTTGGA 58.986 45.455 0.00 0.00 0.00 3.53
2488 3561 4.557942 GCAAATGTGGTTGCCGAG 57.442 55.556 0.00 0.00 46.69 4.63
2496 3569 6.256321 GGAATACAAAGCATTAGCAAATGTGG 59.744 38.462 0.57 0.00 43.75 4.17
2511 3584 4.984161 CCAGCACAAAAGTGGAATACAAAG 59.016 41.667 0.00 0.00 32.60 2.77
2517 3590 1.963515 GGTCCAGCACAAAAGTGGAAT 59.036 47.619 0.00 0.00 42.07 3.01
2521 3594 2.023673 TCAAGGTCCAGCACAAAAGTG 58.976 47.619 0.00 0.00 0.00 3.16
2596 3669 5.765182 ACAGAGGATCAACAAGTAGTTTTGG 59.235 40.000 0.00 0.00 38.74 3.28
2606 3679 4.639078 TTCCATGACAGAGGATCAACAA 57.361 40.909 0.00 0.00 37.82 2.83
2615 3688 5.443185 AACATGTTGTTTCCATGACAGAG 57.557 39.130 11.07 0.00 41.78 3.35
2645 4149 2.287368 CGTGGTTAGTGGTTTCTTTGCC 60.287 50.000 0.00 0.00 0.00 4.52
2665 4169 5.008712 ACTTTGTAAAAGGCTTCTTCTTCCG 59.991 40.000 0.00 0.00 0.00 4.30
2697 5233 1.143073 GGAACAGGGAACAGTTGACCT 59.857 52.381 0.00 0.00 40.49 3.85
2735 5271 5.873179 TTGAAAGTCATCGGACAATTACC 57.127 39.130 0.00 0.00 46.80 2.85
2756 5292 2.032924 GTGGTACTTGCACGCTCTTTTT 59.967 45.455 0.00 0.00 0.00 1.94
2787 5323 9.426837 CTAGAATTGAAATTGCTTTTCCATCAA 57.573 29.630 9.31 0.00 42.63 2.57
2792 5328 8.299570 TCTGACTAGAATTGAAATTGCTTTTCC 58.700 33.333 0.00 0.00 42.63 3.13
2798 5334 7.247019 GGTCTTCTGACTAGAATTGAAATTGC 58.753 38.462 0.00 0.00 41.83 3.56
2801 5337 6.012508 TGGGGTCTTCTGACTAGAATTGAAAT 60.013 38.462 0.00 0.00 41.83 2.17
2805 5341 4.764172 CTGGGGTCTTCTGACTAGAATTG 58.236 47.826 0.00 0.00 41.83 2.32
2829 5370 2.416547 CTCTTACATTGTTGAGGTGGCG 59.583 50.000 0.00 0.00 0.00 5.69
2863 5404 2.754254 GCCGATGGTTTGACCCCC 60.754 66.667 0.00 0.00 37.50 5.40
2864 5405 1.379843 ATGCCGATGGTTTGACCCC 60.380 57.895 0.00 0.00 37.50 4.95
2865 5406 1.809207 CATGCCGATGGTTTGACCC 59.191 57.895 0.00 0.00 37.50 4.46
2866 5407 1.139520 GCATGCCGATGGTTTGACC 59.860 57.895 6.36 0.00 39.22 4.02
2867 5408 0.456653 GTGCATGCCGATGGTTTGAC 60.457 55.000 16.68 0.00 0.00 3.18
2868 5409 1.594194 GGTGCATGCCGATGGTTTGA 61.594 55.000 16.68 0.00 0.00 2.69
2869 5410 1.153784 GGTGCATGCCGATGGTTTG 60.154 57.895 16.68 0.00 0.00 2.93
2870 5411 3.287445 GGTGCATGCCGATGGTTT 58.713 55.556 16.68 0.00 0.00 3.27
2878 5419 3.443045 CCTTGGTCGGTGCATGCC 61.443 66.667 16.68 6.42 0.00 4.40
2879 5420 3.443045 CCCTTGGTCGGTGCATGC 61.443 66.667 11.82 11.82 0.00 4.06
2880 5421 2.034066 ACCCTTGGTCGGTGCATG 59.966 61.111 0.00 0.00 30.39 4.06
2881 5422 2.034066 CACCCTTGGTCGGTGCAT 59.966 61.111 0.00 0.00 44.10 3.96
2885 5426 3.246880 GGGTCACCCTTGGTCGGT 61.247 66.667 5.22 0.00 41.34 4.69
2946 5827 2.746359 CTCTCATCCCCATCCCGC 59.254 66.667 0.00 0.00 0.00 6.13
2948 5829 1.849823 CCCCTCTCATCCCCATCCC 60.850 68.421 0.00 0.00 0.00 3.85
2953 5834 2.774351 CCACCCCCTCTCATCCCC 60.774 72.222 0.00 0.00 0.00 4.81
2956 5837 0.914417 TTGTCCCACCCCCTCTCATC 60.914 60.000 0.00 0.00 0.00 2.92
2964 5845 1.685820 CTTCCTCTTGTCCCACCCC 59.314 63.158 0.00 0.00 0.00 4.95
2967 5848 1.376037 CGCCTTCCTCTTGTCCCAC 60.376 63.158 0.00 0.00 0.00 4.61
2982 5863 4.530857 CACCGGTCCTCCATCGCC 62.531 72.222 2.59 0.00 0.00 5.54
3011 5892 1.895131 GGATGCCACAACATGAAACCT 59.105 47.619 0.00 0.00 0.00 3.50
3022 5903 2.238521 GTTGAAAAGAGGGATGCCACA 58.761 47.619 5.86 0.00 0.00 4.17
3026 5907 2.351738 CGTTGGTTGAAAAGAGGGATGC 60.352 50.000 0.00 0.00 0.00 3.91
3030 5911 3.250040 CACTACGTTGGTTGAAAAGAGGG 59.750 47.826 0.00 0.00 0.00 4.30
3031 5912 3.875134 ACACTACGTTGGTTGAAAAGAGG 59.125 43.478 0.00 0.00 0.00 3.69
3035 5916 4.093703 CAGACACACTACGTTGGTTGAAAA 59.906 41.667 0.00 0.00 0.00 2.29
3097 6091 8.133627 AGATCGATTGGTGATTGAATTGAATTC 58.866 33.333 10.85 10.85 39.70 2.17
3107 6101 5.106197 TGGTTTTGAGATCGATTGGTGATTG 60.106 40.000 0.00 0.00 0.00 2.67
3189 6189 6.154021 ACCTAGCAGTCTAAAATTCTACGGAA 59.846 38.462 0.00 0.00 35.78 4.30
3219 7046 8.458843 CAACCCCAACTTGTTAATATTCTACTG 58.541 37.037 0.00 0.00 0.00 2.74
3221 7048 7.122204 AGCAACCCCAACTTGTTAATATTCTAC 59.878 37.037 0.00 0.00 0.00 2.59
3224 7051 6.152831 AGAGCAACCCCAACTTGTTAATATTC 59.847 38.462 0.00 0.00 0.00 1.75
3225 7052 6.016555 AGAGCAACCCCAACTTGTTAATATT 58.983 36.000 0.00 0.00 0.00 1.28
3227 7054 4.993028 AGAGCAACCCCAACTTGTTAATA 58.007 39.130 0.00 0.00 0.00 0.98
3228 7055 3.826729 GAGAGCAACCCCAACTTGTTAAT 59.173 43.478 0.00 0.00 0.00 1.40
3229 7056 3.219281 GAGAGCAACCCCAACTTGTTAA 58.781 45.455 0.00 0.00 0.00 2.01
3230 7057 2.173782 TGAGAGCAACCCCAACTTGTTA 59.826 45.455 0.00 0.00 0.00 2.41
3272 7150 1.903877 CTCACCTTCACCCGCCATCT 61.904 60.000 0.00 0.00 0.00 2.90
3276 7154 2.266055 CTCTCACCTTCACCCGCC 59.734 66.667 0.00 0.00 0.00 6.13
3281 7159 0.674895 AATGCGCCTCTCACCTTCAC 60.675 55.000 4.18 0.00 0.00 3.18
3285 7163 0.462759 GCTTAATGCGCCTCTCACCT 60.463 55.000 4.18 0.00 0.00 4.00
3340 7239 4.521256 TTGTAATACAAAGGGTTGCAGACC 59.479 41.667 2.97 8.94 40.47 3.85
3430 8273 6.228258 AGGAAGTAATTGCTTCACGTTAAGA 58.772 36.000 29.67 0.00 44.81 2.10
3446 8289 1.856629 CCCAGGTACGGAGGAAGTAA 58.143 55.000 0.00 0.00 0.00 2.24
3572 8415 1.270041 TGCACACGCACAGATCAGTTA 60.270 47.619 0.00 0.00 45.36 2.24
3616 8496 6.040054 TGGAATGAACCGAAGTAGATCGATTA 59.960 38.462 0.00 0.00 45.48 1.75
3690 8598 4.304413 ATGCCCACCAGCTTGCCA 62.304 61.111 0.00 0.00 0.00 4.92
4337 9248 8.638685 AAACACAAGAATATAAATGATGCAGC 57.361 30.769 0.00 0.00 0.00 5.25
4363 9274 9.590451 ACAAGAATGAATAATGTAATGCTTTGG 57.410 29.630 0.00 0.00 0.00 3.28
4391 9304 7.624879 TGGCCCTGATATCTCATAATTCAGATA 59.375 37.037 0.00 4.84 36.72 1.98
4392 9305 6.446110 TGGCCCTGATATCTCATAATTCAGAT 59.554 38.462 0.00 0.00 36.72 2.90
4433 9346 3.258228 AATCACCTGCAGCTCGGCA 62.258 57.895 8.66 0.00 42.53 5.69
4445 9358 5.057149 AGTTACTTCACACACTGAATCACC 58.943 41.667 0.00 0.00 38.26 4.02
4446 9359 6.604735 AAGTTACTTCACACACTGAATCAC 57.395 37.500 0.00 0.00 38.26 3.06
4451 9364 9.990360 TGAATTATAAGTTACTTCACACACTGA 57.010 29.630 0.00 0.00 0.00 3.41
4453 9366 9.998106 ACTGAATTATAAGTTACTTCACACACT 57.002 29.630 0.00 0.00 0.00 3.55
4455 9368 9.772973 ACACTGAATTATAAGTTACTTCACACA 57.227 29.630 0.00 0.00 0.00 3.72
4457 9370 9.772973 ACACACTGAATTATAAGTTACTTCACA 57.227 29.630 0.00 0.00 0.00 3.58
4459 9372 9.990360 TCACACACTGAATTATAAGTTACTTCA 57.010 29.630 0.00 0.00 0.00 3.02
4461 9374 9.998106 ACTCACACACTGAATTATAAGTTACTT 57.002 29.630 2.32 2.32 0.00 2.24
4472 9385 9.261180 CCGAAATATATACTCACACACTGAATT 57.739 33.333 0.00 0.00 0.00 2.17
4496 9409 1.303236 TTGGATCAAGCACCACCCG 60.303 57.895 0.00 0.00 35.81 5.28
4539 9452 6.509656 TGGATACACAACTTCGTATATCCAC 58.490 40.000 6.93 0.00 46.17 4.02
4557 9470 2.934553 GGACCGTTTTGCTAGTGGATAC 59.065 50.000 0.00 0.00 0.00 2.24
4605 9518 6.140880 GATCATGATCATTGGCCGTTACGG 62.141 50.000 27.30 20.58 42.60 4.02
4606 9519 2.209273 TCATGATCATTGGCCGTTACG 58.791 47.619 5.16 0.00 0.00 3.18
4607 9520 3.814842 TGATCATGATCATTGGCCGTTAC 59.185 43.478 30.27 4.93 42.42 2.50
4609 9522 2.934887 TGATCATGATCATTGGCCGTT 58.065 42.857 30.27 0.00 42.42 4.44
4610 9523 2.643995 TGATCATGATCATTGGCCGT 57.356 45.000 30.27 0.00 42.42 5.68
4999 9937 6.169419 TCATAAAATGTTCGCTGACTCAAG 57.831 37.500 0.00 0.00 0.00 3.02
5039 9980 5.365403 TTCAAAAACAGTTCGTGACTTGT 57.635 34.783 0.00 0.00 36.10 3.16
5075 10017 9.819267 ATTTTGCCAATTCAAACATGAATTTTT 57.181 22.222 12.71 0.00 43.57 1.94
5077 10019 9.465985 GAATTTTGCCAATTCAAACATGAATTT 57.534 25.926 12.71 0.00 43.57 1.82
5085 10034 7.014092 TGAACAGAATTTTGCCAATTCAAAC 57.986 32.000 16.71 8.49 38.70 2.93
5241 10229 7.649533 TTCATAAATGCTTGTGGATTCAGAT 57.350 32.000 0.00 0.00 33.01 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.