Multiple sequence alignment - TraesCS2B01G499800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G499800 chr2B 100.000 4088 0 0 1 4088 695586929 695591016 0.000000e+00 7550
1 TraesCS2B01G499800 chr2A 94.031 3401 169 24 694 4088 716227707 716231079 0.000000e+00 5125
2 TraesCS2B01G499800 chr2D 91.709 3377 181 55 702 4061 578696789 578700083 0.000000e+00 4593
3 TraesCS2B01G499800 chr2D 83.560 663 64 22 1 653 578696071 578696698 2.740000e-161 579


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G499800 chr2B 695586929 695591016 4087 False 7550 7550 100.0000 1 4088 1 chr2B.!!$F1 4087
1 TraesCS2B01G499800 chr2A 716227707 716231079 3372 False 5125 5125 94.0310 694 4088 1 chr2A.!!$F1 3394
2 TraesCS2B01G499800 chr2D 578696071 578700083 4012 False 2586 4593 87.6345 1 4061 2 chr2D.!!$F1 4060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 725 0.392998 CCCTGGACGCAATAAGCAGT 60.393 55.000 0.00 0.0 46.13 4.40 F
786 856 1.202568 CCTTCACGCTAGCCATCATCA 60.203 52.381 9.66 0.0 0.00 3.07 F
1152 1226 1.374252 CTTCTACGCCAAGCACGGT 60.374 57.895 0.00 0.0 34.00 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1676 0.318955 GCAGGTTTTGTTGCGAGCAT 60.319 50.0 0.00 0.0 0.00 3.79 R
1617 1691 1.018226 GCAGTGCAGTGAGTAGCAGG 61.018 60.0 25.76 0.0 42.14 4.85 R
3127 3211 1.142936 TGGTGCATCTATCAGGGCAT 58.857 50.0 0.00 0.0 38.68 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.897050 AGCATGTTTTCTTGTTCGGTTTTA 58.103 33.333 0.00 0.00 0.00 1.52
41 42 6.512297 AGCATGTTTTCTTGTTCGGTTTTAT 58.488 32.000 0.00 0.00 0.00 1.40
42 43 6.640907 AGCATGTTTTCTTGTTCGGTTTTATC 59.359 34.615 0.00 0.00 0.00 1.75
43 44 6.398517 GCATGTTTTCTTGTTCGGTTTTATCG 60.399 38.462 0.00 0.00 0.00 2.92
44 45 5.512473 TGTTTTCTTGTTCGGTTTTATCGG 58.488 37.500 0.00 0.00 0.00 4.18
45 46 5.066246 TGTTTTCTTGTTCGGTTTTATCGGT 59.934 36.000 0.00 0.00 0.00 4.69
46 47 5.754543 TTTCTTGTTCGGTTTTATCGGTT 57.245 34.783 0.00 0.00 0.00 4.44
47 48 5.754543 TTCTTGTTCGGTTTTATCGGTTT 57.245 34.783 0.00 0.00 0.00 3.27
48 49 5.754543 TCTTGTTCGGTTTTATCGGTTTT 57.245 34.783 0.00 0.00 0.00 2.43
84 85 6.648879 TCCTAAACAAGGGATTTTCTGTTG 57.351 37.500 0.00 0.00 46.55 3.33
88 89 7.599998 CCTAAACAAGGGATTTTCTGTTGATTG 59.400 37.037 0.00 0.00 42.32 2.67
90 91 6.089249 ACAAGGGATTTTCTGTTGATTGTC 57.911 37.500 0.00 0.00 0.00 3.18
96 97 9.401058 AGGGATTTTCTGTTGATTGTCTATTAG 57.599 33.333 0.00 0.00 0.00 1.73
104 105 8.160765 TCTGTTGATTGTCTATTAGGTTTTCCA 58.839 33.333 0.00 0.00 43.73 3.53
110 111 9.232473 GATTGTCTATTAGGTTTTCCAGTTTCT 57.768 33.333 0.00 0.00 43.73 2.52
111 112 8.990163 TTGTCTATTAGGTTTTCCAGTTTCTT 57.010 30.769 0.00 0.00 43.73 2.52
533 544 7.490000 AGCTACAGTAATCATACAGTAACACC 58.510 38.462 0.00 0.00 34.72 4.16
534 545 6.700520 GCTACAGTAATCATACAGTAACACCC 59.299 42.308 0.00 0.00 34.72 4.61
548 559 5.182380 CAGTAACACCCGGACAACAATAATT 59.818 40.000 0.73 0.00 0.00 1.40
558 569 5.121611 CGGACAACAATAATTGCTACAGTGA 59.878 40.000 0.00 0.00 32.47 3.41
560 571 7.189512 GGACAACAATAATTGCTACAGTGATC 58.810 38.462 0.00 0.00 32.47 2.92
574 585 0.718343 GTGATCTCGCTGCACTGAAC 59.282 55.000 0.00 0.00 0.00 3.18
577 588 2.005451 GATCTCGCTGCACTGAACATT 58.995 47.619 0.00 0.00 0.00 2.71
602 613 8.846943 TGTTACAGTCAGTGATTGTTTGATAT 57.153 30.769 24.18 2.67 34.49 1.63
655 725 0.392998 CCCTGGACGCAATAAGCAGT 60.393 55.000 0.00 0.00 46.13 4.40
683 753 4.803426 CCTCGTCCTGGCGACTGC 62.803 72.222 8.74 0.00 39.56 4.40
785 855 1.506493 CCTTCACGCTAGCCATCATC 58.494 55.000 9.66 0.00 0.00 2.92
786 856 1.202568 CCTTCACGCTAGCCATCATCA 60.203 52.381 9.66 0.00 0.00 3.07
811 881 2.743928 CACCGCAACCTGAGAGCC 60.744 66.667 0.00 0.00 0.00 4.70
825 895 3.726558 GAGCCTGGGCATGCCATGA 62.727 63.158 36.56 19.27 44.88 3.07
827 897 2.277737 CCTGGGCATGCCATGAGT 59.722 61.111 36.56 0.00 37.98 3.41
848 918 3.849951 GGATCGGAGCCTCGGCAA 61.850 66.667 11.02 0.00 44.88 4.52
849 919 2.423446 GATCGGAGCCTCGGCAAT 59.577 61.111 11.02 0.00 44.88 3.56
924 997 2.620585 CGAGGAGATACACATGCTCTGA 59.379 50.000 0.00 0.00 32.24 3.27
944 1017 4.141287 TGATAGACTGAGCTCTTCCTAGC 58.859 47.826 16.19 14.78 43.11 3.42
950 1023 1.740332 GAGCTCTTCCTAGCCCGGAC 61.740 65.000 0.73 0.00 43.86 4.79
959 1032 3.950794 TAGCCCGGACGCAAAGCTG 62.951 63.158 0.73 0.00 35.03 4.24
1026 1100 1.823041 GGCCGCCGACTACTACTCT 60.823 63.158 0.00 0.00 0.00 3.24
1152 1226 1.374252 CTTCTACGCCAAGCACGGT 60.374 57.895 0.00 0.00 34.00 4.83
1395 1469 2.261981 CATGCATGCACGGCCAAA 59.738 55.556 25.37 0.00 0.00 3.28
1404 1478 1.530655 CACGGCCAAAGGGAGGTTT 60.531 57.895 2.24 0.00 35.59 3.27
1407 1481 1.533994 GGCCAAAGGGAGGTTTGCT 60.534 57.895 0.00 0.00 36.29 3.91
1607 1681 4.862902 TGCTGAGAGAAGGTATATGCTC 57.137 45.455 0.00 0.00 0.00 4.26
1617 1691 4.616181 AGGTATATGCTCGCAACAAAAC 57.384 40.909 0.00 0.00 0.00 2.43
1628 1702 2.602217 CGCAACAAAACCTGCTACTCAC 60.602 50.000 0.00 0.00 36.38 3.51
1670 1751 1.226603 CCCGCTCACGTACTGCTAC 60.227 63.158 0.00 0.00 37.70 3.58
1671 1752 1.226603 CCGCTCACGTACTGCTACC 60.227 63.158 0.00 0.00 37.70 3.18
1674 1755 1.667756 CGCTCACGTACTGCTACCAAA 60.668 52.381 0.00 0.00 33.53 3.28
1708 1789 5.593909 CCATGCCCTTCATTGTAATTGTAGA 59.406 40.000 0.00 0.00 31.79 2.59
1709 1790 6.266103 CCATGCCCTTCATTGTAATTGTAGAT 59.734 38.462 0.00 0.00 31.79 1.98
1710 1791 7.201938 CCATGCCCTTCATTGTAATTGTAGATT 60.202 37.037 0.00 0.00 31.79 2.40
1711 1792 7.716799 TGCCCTTCATTGTAATTGTAGATTT 57.283 32.000 0.00 0.00 0.00 2.17
1712 1793 7.546358 TGCCCTTCATTGTAATTGTAGATTTG 58.454 34.615 0.00 0.00 0.00 2.32
1713 1794 7.178274 TGCCCTTCATTGTAATTGTAGATTTGT 59.822 33.333 0.00 0.00 0.00 2.83
1714 1795 8.682710 GCCCTTCATTGTAATTGTAGATTTGTA 58.317 33.333 0.00 0.00 0.00 2.41
1728 1809 7.327214 TGTAGATTTGTAGTGTGTCATGCATA 58.673 34.615 0.00 0.00 0.00 3.14
1737 1818 7.555914 TGTAGTGTGTCATGCATACCATATTTT 59.444 33.333 0.00 0.00 39.64 1.82
1792 1873 3.613527 GGGACTCCCCGAGTGTAC 58.386 66.667 2.04 0.00 43.53 2.90
1794 1875 0.901580 GGGACTCCCCGAGTGTACAA 60.902 60.000 2.04 0.00 43.53 2.41
1882 1964 8.417176 CGTTCACATAAAATTAGCACTTTCAAC 58.583 33.333 0.00 0.00 0.00 3.18
1883 1965 8.699749 GTTCACATAAAATTAGCACTTTCAACC 58.300 33.333 0.00 0.00 0.00 3.77
1920 2002 3.069443 TCCCCTGTTCAATTTCTGTTTGC 59.931 43.478 0.00 0.00 0.00 3.68
1979 2061 6.757237 TGTTGTTTGAATATTGGAAGTGCAT 58.243 32.000 0.00 0.00 0.00 3.96
2008 2091 8.642935 TTCCTTGATTGTTAACCATTGACATA 57.357 30.769 2.48 0.00 0.00 2.29
2009 2092 8.642935 TCCTTGATTGTTAACCATTGACATAA 57.357 30.769 2.48 0.00 0.00 1.90
2046 2130 1.236616 TGCTGCCTGACCATTTCACG 61.237 55.000 0.00 0.00 0.00 4.35
2195 2279 1.885233 TGCAAAATGTCGGAGCATGAA 59.115 42.857 0.00 0.00 0.00 2.57
2547 2631 2.700773 GCCCTGCCGAAATGTGGTC 61.701 63.158 0.00 0.00 0.00 4.02
2731 2815 5.439721 TGGAGTATTTCACTTCCATGATGG 58.560 41.667 4.74 4.74 37.72 3.51
2853 2937 2.304761 TGTGGATACTGAACCCAACTCC 59.695 50.000 0.00 0.00 37.61 3.85
2934 3018 6.418101 AGAAACTGCAGCCAAGAATCTTATA 58.582 36.000 15.27 0.00 0.00 0.98
2968 3052 5.357314 GCTGAGAGTTCTGTACACTATACCA 59.643 44.000 0.00 0.00 0.00 3.25
2985 3069 3.302365 ACCATGCTTGCAAACATGTAC 57.698 42.857 30.79 5.56 41.69 2.90
3019 3103 2.431954 ATGGGAGGATGCTCAAAGTG 57.568 50.000 16.72 0.00 0.00 3.16
3194 3279 1.492599 TGTCCACAATGAACCTGACCA 59.507 47.619 0.00 0.00 0.00 4.02
3201 3286 4.221262 CACAATGAACCTGACCAATCCAAT 59.779 41.667 0.00 0.00 0.00 3.16
3455 3541 3.317608 GCGGATGCATGTTTGTCTG 57.682 52.632 2.46 0.00 42.15 3.51
3489 3575 6.873997 TGTCAGTATTCTCAATTATGTCCGT 58.126 36.000 0.00 0.00 0.00 4.69
3497 3583 6.918892 TCTCAATTATGTCCGTTGTATTGG 57.081 37.500 0.00 0.00 0.00 3.16
3513 3599 0.465460 TTGGTTGGACAGTCACAGGC 60.465 55.000 2.17 0.00 0.00 4.85
3625 3714 6.878923 CAGTTTGTGATTCCCTTCTGTACATA 59.121 38.462 0.00 0.00 0.00 2.29
3632 3721 9.915629 GTGATTCCCTTCTGTACATAACTATAG 57.084 37.037 0.00 0.00 0.00 1.31
3633 3722 9.656323 TGATTCCCTTCTGTACATAACTATAGT 57.344 33.333 0.00 0.00 0.00 2.12
3660 3749 2.436911 ACCCTGTTTTTCCACTCTACGT 59.563 45.455 0.00 0.00 0.00 3.57
3683 3772 7.390440 ACGTTATCCATTTCTCTTTTGATGTGA 59.610 33.333 0.00 0.00 0.00 3.58
3933 4023 6.042143 CCATGTGCTGTTGACTTAAGTTTTT 58.958 36.000 10.02 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.016276 ACCGAACAAGAAAACATGCTTAGATT 60.016 34.615 0.00 0.00 0.00 2.40
14 15 5.108385 ACCGAACAAGAAAACATGCTTAG 57.892 39.130 0.00 0.00 0.00 2.18
40 41 2.673258 ACAAAGGTTCCCAAAACCGAT 58.327 42.857 1.52 0.00 44.82 4.18
41 42 2.146920 ACAAAGGTTCCCAAAACCGA 57.853 45.000 1.52 0.00 44.82 4.69
42 43 2.816689 GAACAAAGGTTCCCAAAACCG 58.183 47.619 1.52 0.00 46.18 4.44
68 69 6.336842 AGACAATCAACAGAAAATCCCTTG 57.663 37.500 0.00 0.00 0.00 3.61
84 85 9.232473 AGAAACTGGAAAACCTAATAGACAATC 57.768 33.333 0.00 0.00 0.00 2.67
111 112 8.729805 ATGAACAGCAGAATAAAAACCAAAAA 57.270 26.923 0.00 0.00 0.00 1.94
494 505 4.554292 ACTGTAGCTTCGCATCATATGAG 58.446 43.478 11.78 4.86 0.00 2.90
495 506 4.590850 ACTGTAGCTTCGCATCATATGA 57.409 40.909 8.10 8.10 0.00 2.15
496 507 6.587608 TGATTACTGTAGCTTCGCATCATATG 59.412 38.462 0.00 0.00 0.00 1.78
501 512 5.920840 TGTATGATTACTGTAGCTTCGCATC 59.079 40.000 0.00 0.00 0.00 3.91
502 513 5.842907 TGTATGATTACTGTAGCTTCGCAT 58.157 37.500 0.00 0.00 0.00 4.73
505 516 7.913821 TGTTACTGTATGATTACTGTAGCTTCG 59.086 37.037 0.00 0.00 41.14 3.79
533 544 4.394920 ACTGTAGCAATTATTGTTGTCCGG 59.605 41.667 6.81 0.00 0.00 5.14
534 545 5.121611 TCACTGTAGCAATTATTGTTGTCCG 59.878 40.000 6.81 0.00 0.00 4.79
548 559 0.179127 GCAGCGAGATCACTGTAGCA 60.179 55.000 10.83 0.00 36.26 3.49
558 569 1.736126 CAATGTTCAGTGCAGCGAGAT 59.264 47.619 0.00 0.00 0.00 2.75
560 571 0.870393 ACAATGTTCAGTGCAGCGAG 59.130 50.000 0.13 0.00 0.00 5.03
574 585 7.416817 TCAAACAATCACTGACTGTAACAATG 58.583 34.615 0.00 0.00 0.00 2.82
577 588 8.846943 ATATCAAACAATCACTGACTGTAACA 57.153 30.769 0.00 0.00 0.00 2.41
602 613 2.508928 GCCGGCCCATTAGTGCTA 59.491 61.111 18.11 0.00 0.00 3.49
635 646 1.077787 TGCTTATTGCGTCCAGGGG 60.078 57.895 0.00 0.00 46.63 4.79
655 725 2.680352 GACGAGGAGTGAGGGGCA 60.680 66.667 0.00 0.00 0.00 5.36
770 840 1.328680 GTGTTGATGATGGCTAGCGTG 59.671 52.381 9.00 0.00 0.00 5.34
772 842 0.940126 GGTGTTGATGATGGCTAGCG 59.060 55.000 9.00 0.00 0.00 4.26
785 855 1.226831 GGTTGCGGTGTTGGTGTTG 60.227 57.895 0.00 0.00 0.00 3.33
786 856 1.379309 AGGTTGCGGTGTTGGTGTT 60.379 52.632 0.00 0.00 0.00 3.32
825 895 0.896019 CGAGGCTCCGATCCCATACT 60.896 60.000 9.32 0.00 0.00 2.12
827 897 1.606601 CCGAGGCTCCGATCCCATA 60.607 63.158 9.32 0.00 0.00 2.74
871 944 2.342650 CGCCTGGGTTGGTCAATGG 61.343 63.158 0.00 0.00 0.00 3.16
874 947 4.966787 GCCGCCTGGGTTGGTCAA 62.967 66.667 0.00 0.00 38.44 3.18
924 997 3.496331 GGCTAGGAAGAGCTCAGTCTAT 58.504 50.000 17.77 8.37 42.43 1.98
944 1017 2.966309 GAACAGCTTTGCGTCCGGG 61.966 63.158 0.00 0.00 0.00 5.73
950 1023 2.483877 TGTGGAATAGAACAGCTTTGCG 59.516 45.455 0.00 0.00 0.00 4.85
959 1032 3.243907 CCCTCCGAGATGTGGAATAGAAC 60.244 52.174 0.00 0.00 34.44 3.01
960 1033 2.965831 CCCTCCGAGATGTGGAATAGAA 59.034 50.000 0.00 0.00 34.44 2.10
1026 1100 1.335882 CCATGCAGCTCTGGAGGAGA 61.336 60.000 8.49 0.00 44.45 3.71
1169 1243 0.037697 CATTCCGTCGAACACCCTGA 60.038 55.000 0.00 0.00 0.00 3.86
1380 1454 3.682885 CCTTTGGCCGTGCATGCA 61.683 61.111 18.46 18.46 0.00 3.96
1383 1457 2.361610 CTCCCTTTGGCCGTGCAT 60.362 61.111 0.00 0.00 0.00 3.96
1387 1461 1.530655 CAAACCTCCCTTTGGCCGT 60.531 57.895 0.00 0.00 0.00 5.68
1395 1469 2.121506 TCCCCAGCAAACCTCCCT 60.122 61.111 0.00 0.00 0.00 4.20
1404 1478 1.302431 CACGAACATGTCCCCAGCA 60.302 57.895 0.00 0.00 0.00 4.41
1407 1481 1.302431 CTGCACGAACATGTCCCCA 60.302 57.895 0.00 0.00 0.00 4.96
1602 1676 0.318955 GCAGGTTTTGTTGCGAGCAT 60.319 50.000 0.00 0.00 0.00 3.79
1607 1681 1.601903 TGAGTAGCAGGTTTTGTTGCG 59.398 47.619 0.00 0.00 44.80 4.85
1617 1691 1.018226 GCAGTGCAGTGAGTAGCAGG 61.018 60.000 25.76 0.00 42.14 4.85
1628 1702 2.060326 CACATTTCAAGGCAGTGCAG 57.940 50.000 18.61 6.27 0.00 4.41
1661 1742 5.106277 GGATTTGAGGTTTTGGTAGCAGTAC 60.106 44.000 0.00 0.00 0.00 2.73
1670 1751 2.355007 GGGCATGGATTTGAGGTTTTGG 60.355 50.000 0.00 0.00 0.00 3.28
1671 1752 2.568509 AGGGCATGGATTTGAGGTTTTG 59.431 45.455 0.00 0.00 0.00 2.44
1674 1755 2.225343 TGAAGGGCATGGATTTGAGGTT 60.225 45.455 0.00 0.00 0.00 3.50
1708 1789 5.252547 TGGTATGCATGACACACTACAAAT 58.747 37.500 10.16 0.00 0.00 2.32
1709 1790 4.646572 TGGTATGCATGACACACTACAAA 58.353 39.130 10.16 0.00 0.00 2.83
1710 1791 4.278975 TGGTATGCATGACACACTACAA 57.721 40.909 10.16 0.00 0.00 2.41
1711 1792 3.971245 TGGTATGCATGACACACTACA 57.029 42.857 10.16 0.00 0.00 2.74
1712 1793 7.496529 AAATATGGTATGCATGACACACTAC 57.503 36.000 10.16 0.00 0.00 2.73
1713 1794 9.791801 ATAAAATATGGTATGCATGACACACTA 57.208 29.630 10.16 0.00 0.00 2.74
1714 1795 8.696043 ATAAAATATGGTATGCATGACACACT 57.304 30.769 10.16 0.00 0.00 3.55
1715 1796 9.748708 AAATAAAATATGGTATGCATGACACAC 57.251 29.630 10.16 0.00 0.00 3.82
1802 1883 4.783227 ACCCTGTCTGGTACATTTCTATGT 59.217 41.667 0.00 0.00 46.49 2.29
1860 1942 8.586570 TTGGTTGAAAGTGCTAATTTTATGTG 57.413 30.769 0.00 0.00 0.00 3.21
1890 1972 9.320295 ACAGAAATTGAACAGGGGATTTATTTA 57.680 29.630 0.00 0.00 0.00 1.40
1901 1983 4.326504 AGGCAAACAGAAATTGAACAGG 57.673 40.909 0.00 0.00 0.00 4.00
2195 2279 5.907207 AGTCATATATCACTCGTGCACTTT 58.093 37.500 16.19 0.00 0.00 2.66
2371 2455 5.706833 TGAGACATGACACATTAGCACAAAT 59.293 36.000 0.00 0.00 0.00 2.32
2547 2631 4.569966 GCAGTAATGAGTGAAGTCCATGAG 59.430 45.833 0.00 0.00 0.00 2.90
2731 2815 2.132762 CGGATCAATACCGTACTTGCC 58.867 52.381 0.00 0.00 44.57 4.52
2853 2937 2.430465 AGCATAGCGCCCAATATTGAG 58.570 47.619 17.23 4.64 44.04 3.02
2934 3018 4.101741 ACAGAACTCTCAGCACCTTTACTT 59.898 41.667 0.00 0.00 0.00 2.24
2968 3052 1.269174 TGCGTACATGTTTGCAAGCAT 59.731 42.857 21.53 21.53 33.80 3.79
2985 3069 5.551233 TCCTCCCATAAATTAGATTCTGCG 58.449 41.667 0.00 0.00 0.00 5.18
3019 3103 5.237048 TGTTTCAGCCATTAATTTCCTTGC 58.763 37.500 0.00 0.00 0.00 4.01
3095 3179 9.894783 CATTATCTGAATATCTTGGAAAGCAAG 57.105 33.333 0.00 0.00 45.70 4.01
3127 3211 1.142936 TGGTGCATCTATCAGGGCAT 58.857 50.000 0.00 0.00 38.68 4.40
3194 3279 5.158141 TCTGGAGGCTCTACATATTGGATT 58.842 41.667 15.23 0.00 0.00 3.01
3201 3286 5.211973 ACAAAGATCTGGAGGCTCTACATA 58.788 41.667 15.23 0.00 0.00 2.29
3452 3538 9.025041 TGAGAATACTGACAAGACTTTATCAGA 57.975 33.333 23.93 13.11 40.92 3.27
3489 3575 4.133820 CTGTGACTGTCCAACCAATACAA 58.866 43.478 5.17 0.00 0.00 2.41
3497 3583 2.543777 TAAGCCTGTGACTGTCCAAC 57.456 50.000 5.17 0.00 0.00 3.77
3537 3623 6.274157 TCAGATAGAGACAACTTGGAAGTC 57.726 41.667 0.00 0.00 38.57 3.01
3588 3677 6.657541 GGAATCACAAACTGGTTTATCCACTA 59.342 38.462 0.00 0.00 41.93 2.74
3608 3697 9.915629 CACTATAGTTATGTACAGAAGGGAATC 57.084 37.037 2.50 0.00 0.00 2.52
3625 3714 5.609533 AAACAGGGTATCGCACTATAGTT 57.390 39.130 1.56 0.00 0.00 2.24
3632 3721 2.095415 GTGGAAAAACAGGGTATCGCAC 60.095 50.000 0.00 0.00 0.00 5.34
3633 3722 2.156098 GTGGAAAAACAGGGTATCGCA 58.844 47.619 0.00 0.00 0.00 5.10
3660 3749 8.868522 ACTCACATCAAAAGAGAAATGGATAA 57.131 30.769 0.00 0.00 33.69 1.75
3898 3988 3.620488 ACAGCACATGGGTTCGAATAAT 58.380 40.909 0.00 0.00 0.00 1.28
3902 3992 0.950836 CAACAGCACATGGGTTCGAA 59.049 50.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.