Multiple sequence alignment - TraesCS2B01G499200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G499200 chr2B 100.000 4001 0 0 1 4001 695380563 695376563 0.000000e+00 7389.0
1 TraesCS2B01G499200 chr2B 86.905 1512 145 28 574 2049 695106851 695108345 0.000000e+00 1646.0
2 TraesCS2B01G499200 chr2B 85.026 1349 146 21 581 1892 695172117 695170788 0.000000e+00 1321.0
3 TraesCS2B01G499200 chr2B 88.762 614 45 10 2171 2782 695108442 695109033 0.000000e+00 730.0
4 TraesCS2B01G499200 chr2B 81.029 875 134 16 568 1419 695414340 695413475 0.000000e+00 667.0
5 TraesCS2B01G499200 chr2B 86.667 390 42 6 2817 3199 695170323 695169937 1.330000e-114 424.0
6 TraesCS2B01G499200 chr2B 86.842 380 32 4 2817 3190 695109037 695109404 3.720000e-110 409.0
7 TraesCS2B01G499200 chr2B 78.961 385 62 11 2203 2574 695438058 695437680 1.110000e-60 244.0
8 TraesCS2B01G499200 chr2B 91.489 94 6 2 3717 3809 695435522 695435430 1.170000e-25 128.0
9 TraesCS2B01G499200 chr2B 91.566 83 5 2 2040 2120 695108364 695108446 3.270000e-21 113.0
10 TraesCS2B01G499200 chr2A 91.354 1573 111 7 568 2120 715951234 715949667 0.000000e+00 2128.0
11 TraesCS2B01G499200 chr2A 85.339 1371 140 23 564 1892 715917995 715916644 0.000000e+00 1362.0
12 TraesCS2B01G499200 chr2A 87.271 1037 114 11 574 1601 715880623 715881650 0.000000e+00 1168.0
13 TraesCS2B01G499200 chr2A 80.556 1440 217 35 564 1955 716163629 716165053 0.000000e+00 1050.0
14 TraesCS2B01G499200 chr2A 85.973 827 61 23 3195 4001 715948394 715947603 0.000000e+00 833.0
15 TraesCS2B01G499200 chr2A 90.560 625 43 9 2171 2786 715949671 715949054 0.000000e+00 813.0
16 TraesCS2B01G499200 chr2A 90.414 459 32 8 1 449 715954244 715953788 9.570000e-166 593.0
17 TraesCS2B01G499200 chr2A 91.146 384 28 4 2816 3193 715890550 715890933 2.130000e-142 516.0
18 TraesCS2B01G499200 chr2A 87.133 443 35 8 1622 2049 715881644 715882079 2.160000e-132 483.0
19 TraesCS2B01G499200 chr2A 86.607 448 45 8 2171 2617 715887958 715888391 7.780000e-132 481.0
20 TraesCS2B01G499200 chr2A 86.801 447 33 9 1622 2049 715887422 715887861 3.620000e-130 475.0
21 TraesCS2B01G499200 chr2A 87.436 390 39 6 2817 3199 715916205 715915819 1.320000e-119 440.0
22 TraesCS2B01G499200 chr2A 87.131 373 31 4 2833 3199 715949048 715948687 1.340000e-109 407.0
23 TraesCS2B01G499200 chr2A 89.941 169 8 4 2619 2786 715890391 715890551 4.050000e-50 209.0
24 TraesCS2B01G499200 chr2A 88.696 115 4 4 443 548 715951415 715951301 9.020000e-27 132.0
25 TraesCS2B01G499200 chr2A 91.566 83 5 2 2040 2120 715882098 715882180 3.270000e-21 113.0
26 TraesCS2B01G499200 chr2A 91.566 83 5 2 2040 2120 715887880 715887962 3.270000e-21 113.0
27 TraesCS2B01G499200 chr2A 97.561 41 0 1 3917 3957 715962689 715962650 7.170000e-08 69.4
28 TraesCS2B01G499200 chr2D 86.595 1962 181 31 1 1912 577803429 577801500 0.000000e+00 2091.0
29 TraesCS2B01G499200 chr2D 90.578 1401 104 17 739 2120 577440816 577442207 0.000000e+00 1831.0
30 TraesCS2B01G499200 chr2D 88.248 1421 132 15 574 1975 577581919 577580515 0.000000e+00 1666.0
31 TraesCS2B01G499200 chr2D 85.893 1361 141 16 564 1892 577536203 577537544 0.000000e+00 1402.0
32 TraesCS2B01G499200 chr2D 86.380 815 65 27 3195 4001 577443493 577444269 0.000000e+00 848.0
33 TraesCS2B01G499200 chr2D 88.511 618 49 14 2171 2786 577442203 577442800 0.000000e+00 728.0
34 TraesCS2B01G499200 chr2D 87.640 623 50 16 2171 2786 577580454 577579852 0.000000e+00 699.0
35 TraesCS2B01G499200 chr2D 91.146 384 28 3 2816 3193 577442799 577443182 2.130000e-142 516.0
36 TraesCS2B01G499200 chr2D 91.146 384 28 4 2816 3193 577579853 577579470 2.130000e-142 516.0
37 TraesCS2B01G499200 chr2D 90.576 382 30 3 2816 3191 577800698 577800317 5.970000e-138 501.0
38 TraesCS2B01G499200 chr2D 81.571 624 63 15 2171 2777 577801300 577800712 6.050000e-128 468.0
39 TraesCS2B01G499200 chr2D 85.530 387 46 6 2817 3196 577538007 577538390 2.900000e-106 396.0
40 TraesCS2B01G499200 chr2D 88.793 232 20 4 3202 3429 577799908 577799679 3.040000e-71 279.0
41 TraesCS2B01G499200 chr2D 80.435 276 38 10 3432 3701 577799621 577799356 3.150000e-46 196.0
42 TraesCS2B01G499200 chr2D 79.734 301 35 15 3665 3957 577826277 577825995 1.130000e-45 195.0
43 TraesCS2B01G499200 chr2D 96.491 57 2 0 2118 2174 134642399 134642343 1.180000e-15 95.3
44 TraesCS2B01G499200 chr2D 96.552 58 1 1 2064 2120 577580507 577580450 1.180000e-15 95.3
45 TraesCS2B01G499200 chr2D 100.000 33 0 0 1969 2001 577544721 577544689 1.200000e-05 62.1
46 TraesCS2B01G499200 chr7D 96.552 58 2 0 2117 2174 551735505 551735562 3.290000e-16 97.1
47 TraesCS2B01G499200 chr7D 100.000 32 0 0 2785 2816 452702429 452702398 4.320000e-05 60.2
48 TraesCS2B01G499200 chr6D 95.000 60 3 0 2118 2177 284395006 284394947 1.180000e-15 95.3
49 TraesCS2B01G499200 chr6D 89.855 69 4 2 2109 2174 89242067 89242135 7.120000e-13 86.1
50 TraesCS2B01G499200 chr1B 96.491 57 2 0 2118 2174 656234116 656234060 1.180000e-15 95.3
51 TraesCS2B01G499200 chr1B 100.000 33 0 0 1969 2001 94558750 94558782 1.200000e-05 62.1
52 TraesCS2B01G499200 chr1D 93.651 63 2 2 2117 2177 37558011 37557949 4.260000e-15 93.5
53 TraesCS2B01G499200 chr6B 91.304 69 0 2 2114 2177 418818346 418818413 5.510000e-14 89.8
54 TraesCS2B01G499200 chr6B 89.855 69 4 2 2109 2174 171448567 171448635 7.120000e-13 86.1
55 TraesCS2B01G499200 chr3D 86.585 82 5 6 2078 2156 457400905 457400827 7.120000e-13 86.1
56 TraesCS2B01G499200 chrUn 100.000 33 0 0 1969 2001 41687642 41687674 1.200000e-05 62.1
57 TraesCS2B01G499200 chr5A 89.583 48 5 0 1969 2016 298808135 298808182 1.200000e-05 62.1
58 TraesCS2B01G499200 chr7A 94.737 38 2 0 2779 2816 7805307 7805344 4.320000e-05 60.2
59 TraesCS2B01G499200 chr3B 94.286 35 2 0 2782 2816 173110117 173110151 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G499200 chr2B 695376563 695380563 4000 True 7389.000000 7389 100.000000 1 4001 1 chr2B.!!$R1 4000
1 TraesCS2B01G499200 chr2B 695169937 695172117 2180 True 872.500000 1321 85.846500 581 3199 2 chr2B.!!$R3 2618
2 TraesCS2B01G499200 chr2B 695106851 695109404 2553 False 724.500000 1646 88.518750 574 3190 4 chr2B.!!$F1 2616
3 TraesCS2B01G499200 chr2B 695413475 695414340 865 True 667.000000 667 81.029000 568 1419 1 chr2B.!!$R2 851
4 TraesCS2B01G499200 chr2A 716163629 716165053 1424 False 1050.000000 1050 80.556000 564 1955 1 chr2A.!!$F1 1391
5 TraesCS2B01G499200 chr2A 715915819 715917995 2176 True 901.000000 1362 86.387500 564 3199 2 chr2A.!!$R2 2635
6 TraesCS2B01G499200 chr2A 715947603 715954244 6641 True 817.666667 2128 89.021333 1 4001 6 chr2A.!!$R3 4000
7 TraesCS2B01G499200 chr2A 715880623 715882180 1557 False 588.000000 1168 88.656667 574 2120 3 chr2A.!!$F2 1546
8 TraesCS2B01G499200 chr2A 715887422 715890933 3511 False 358.800000 516 89.212200 1622 3193 5 chr2A.!!$F3 1571
9 TraesCS2B01G499200 chr2D 577440816 577444269 3453 False 980.750000 1831 89.153750 739 4001 4 chr2D.!!$F1 3262
10 TraesCS2B01G499200 chr2D 577536203 577538390 2187 False 899.000000 1402 85.711500 564 3196 2 chr2D.!!$F2 2632
11 TraesCS2B01G499200 chr2D 577579470 577581919 2449 True 744.075000 1666 90.896500 574 3193 4 chr2D.!!$R4 2619
12 TraesCS2B01G499200 chr2D 577799356 577803429 4073 True 707.000000 2091 85.594000 1 3701 5 chr2D.!!$R5 3700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
246 247 0.179020 CCACACTTCACCTTGCCAGA 60.179 55.0 0.0 0.0 0.0 3.86 F
901 3390 0.666577 CCAAGACGACGACACTTCCC 60.667 60.0 0.0 0.0 0.0 3.97 F
2132 4868 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.0 0.0 0.0 0.0 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 4888 0.035458 CTCCCTCCGTCCCATAATGC 59.965 60.000 0.0 0.0 0.0 3.56 R
2157 4893 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.0 0.0 0.0 4.00 R
3826 9180 1.940613 GGAGGGCACTTGCTATTAACG 59.059 52.381 0.0 0.0 41.7 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 228 2.711922 ATGGTCGACCCGCTGACTC 61.712 63.158 31.19 3.87 35.45 3.36
246 247 0.179020 CCACACTTCACCTTGCCAGA 60.179 55.000 0.00 0.00 0.00 3.86
279 280 2.010145 GCATATGTATGGCCGATCGT 57.990 50.000 15.09 0.00 34.32 3.73
351 362 8.953313 ACTTTTTAAAATAAGACCATCCTACCG 58.047 33.333 0.55 0.00 0.00 4.02
403 415 5.540911 TCTCGGTCGTTTTTATGTTTAGGT 58.459 37.500 0.00 0.00 0.00 3.08
429 442 1.490490 ACACTGAAGCAGAAGGGAACA 59.510 47.619 0.82 0.00 35.18 3.18
514 2909 0.971447 AGGGAGGAGGCTGTTACGTC 60.971 60.000 0.00 0.00 0.00 4.34
548 2951 2.757894 TCCTTCCCTCTATCTCGCTT 57.242 50.000 0.00 0.00 0.00 4.68
553 2974 4.081917 CCTTCCCTCTATCTCGCTTAATCC 60.082 50.000 0.00 0.00 0.00 3.01
565 2986 3.751175 TCGCTTAATCCCTTCTGTTGTTG 59.249 43.478 0.00 0.00 0.00 3.33
566 2987 3.751175 CGCTTAATCCCTTCTGTTGTTGA 59.249 43.478 0.00 0.00 0.00 3.18
829 3300 3.175240 CTCGCTTCCTCGCACACG 61.175 66.667 0.00 0.00 42.01 4.49
901 3390 0.666577 CCAAGACGACGACACTTCCC 60.667 60.000 0.00 0.00 0.00 3.97
907 3402 1.746517 GACGACACTTCCCACTGGT 59.253 57.895 0.00 0.00 0.00 4.00
923 3418 3.004839 CACTGGTGGGTCGATGTCTATAG 59.995 52.174 0.00 0.00 0.00 1.31
929 3424 3.889538 TGGGTCGATGTCTATAGTCCTTG 59.110 47.826 0.00 0.00 0.00 3.61
1006 3516 1.674322 AACCCTCAAACGATGGCCG 60.674 57.895 0.00 0.00 45.44 6.13
1100 3610 1.383109 AGGATCAGATGCCGTCCCA 60.383 57.895 0.00 0.00 0.00 4.37
1281 3791 2.276201 CAATGCGAGTCCATTAACGGA 58.724 47.619 6.54 0.00 33.86 4.69
1352 3862 1.609072 CTCTCGAATGGATCTACCGCA 59.391 52.381 0.00 0.00 42.61 5.69
1364 3874 2.914777 CTACCGCAGCCCTTGAGAGC 62.915 65.000 0.00 0.00 0.00 4.09
1467 3977 1.880340 GATCTTGACAGCCGGCGAG 60.880 63.158 23.20 20.55 0.00 5.03
1533 4043 3.379452 AGCTAGCTTTATGGAGGTCACT 58.621 45.455 12.68 0.00 0.00 3.41
1566 4076 3.195610 TGGAAGATACAATCTCAGTGCGT 59.804 43.478 0.00 0.00 39.08 5.24
1569 4079 4.300189 AGATACAATCTCAGTGCGTCTC 57.700 45.455 0.00 0.00 33.42 3.36
1572 4082 5.532779 AGATACAATCTCAGTGCGTCTCATA 59.467 40.000 0.00 0.00 33.42 2.15
1703 4248 4.906423 CTGAAGCAGCATCTGAACAATAC 58.094 43.478 0.00 0.00 32.44 1.89
1725 4272 1.920835 GGCCTGTCTTCCCTGTCCT 60.921 63.158 0.00 0.00 0.00 3.85
1804 4374 6.377146 TGGTGCTAAGGATTCCTTTTTATGTC 59.623 38.462 22.63 8.18 41.69 3.06
1842 4412 5.664294 ATGCAATGATGTTTCTTAAGGCA 57.336 34.783 1.85 0.48 0.00 4.75
1915 4509 9.701098 AACATGTCTTTGAATAACTCGTAGTAA 57.299 29.630 0.00 0.00 0.00 2.24
2003 4699 3.782656 AGACAAGTAATTTGGGACCGT 57.217 42.857 0.00 0.00 41.25 4.83
2027 4725 3.917329 TGAAGTAGACAACCTCGACTG 57.083 47.619 0.00 0.00 35.21 3.51
2034 4735 2.563179 AGACAACCTCGACTGCTTGTAT 59.437 45.455 0.00 0.00 0.00 2.29
2126 4862 9.536510 ACAGAATCTATAATTAGTACTCCCTCC 57.463 37.037 0.00 0.00 0.00 4.30
2127 4863 8.679100 CAGAATCTATAATTAGTACTCCCTCCG 58.321 40.741 0.00 0.00 0.00 4.63
2128 4864 8.392479 AGAATCTATAATTAGTACTCCCTCCGT 58.608 37.037 0.00 0.00 0.00 4.69
2129 4865 8.578448 AATCTATAATTAGTACTCCCTCCGTC 57.422 38.462 0.00 0.00 0.00 4.79
2130 4866 6.479884 TCTATAATTAGTACTCCCTCCGTCC 58.520 44.000 0.00 0.00 0.00 4.79
2131 4867 2.378378 ATTAGTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
2132 4868 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2133 4869 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
2134 4870 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2135 4871 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2136 4872 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2137 4873 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2138 4874 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2139 4875 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2140 4876 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2141 4877 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2142 4878 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2143 4879 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2145 4881 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
2146 4882 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
2147 4883 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
2148 4884 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
2149 4885 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
2166 4902 2.516227 TTTTGGCATTATGGGACGGA 57.484 45.000 0.00 0.00 0.00 4.69
2167 4903 2.051334 TTTGGCATTATGGGACGGAG 57.949 50.000 0.00 0.00 0.00 4.63
2168 4904 0.182537 TTGGCATTATGGGACGGAGG 59.817 55.000 0.00 0.00 0.00 4.30
2169 4905 1.073199 GGCATTATGGGACGGAGGG 59.927 63.158 0.00 0.00 0.00 4.30
2204 4946 9.553064 AATAGCCTAGATTTATCAGAAGTGTTG 57.447 33.333 0.00 0.00 0.00 3.33
2301 5058 8.174733 AGCATATGAATAGCTAGTTTTTGCAT 57.825 30.769 6.97 9.23 36.73 3.96
2340 5106 8.798859 ATTCAGATATGGACAAGTTATATGCC 57.201 34.615 0.00 0.00 0.00 4.40
2341 5107 6.711277 TCAGATATGGACAAGTTATATGCCC 58.289 40.000 0.00 0.00 0.00 5.36
2342 5108 6.272090 TCAGATATGGACAAGTTATATGCCCA 59.728 38.462 0.00 0.00 34.69 5.36
2343 5109 6.942005 CAGATATGGACAAGTTATATGCCCAA 59.058 38.462 0.00 0.00 33.86 4.12
2344 5110 7.613022 CAGATATGGACAAGTTATATGCCCAAT 59.387 37.037 0.00 0.00 33.86 3.16
2345 5111 7.613022 AGATATGGACAAGTTATATGCCCAATG 59.387 37.037 0.00 0.00 33.86 2.82
2348 5114 5.103898 TGGACAAGTTATATGCCCAATGGTA 60.104 40.000 0.00 0.00 26.43 3.25
2412 5178 9.787532 ACATCGGTTTCAAATTTATGTCTTATG 57.212 29.630 0.00 0.00 0.00 1.90
2463 5236 4.653169 TCAGTGAGAACTGAGCATTTGCG 61.653 47.826 4.48 0.00 41.34 4.85
2515 5288 6.384224 TCAAGCTTTGATTTCAACTGCTATG 58.616 36.000 15.69 15.00 41.63 2.23
2522 5295 9.390795 CTTTGATTTCAACTGCTATGTATATGC 57.609 33.333 0.00 0.00 35.28 3.14
2523 5296 8.449251 TTGATTTCAACTGCTATGTATATGCA 57.551 30.769 0.00 0.00 35.30 3.96
2524 5297 8.625786 TGATTTCAACTGCTATGTATATGCAT 57.374 30.769 11.25 11.25 36.07 3.96
2574 5351 6.499106 AAAATCTTCCATGTTTTTGGAGGT 57.501 33.333 3.01 0.00 46.22 3.85
2617 5435 5.698545 GCTTTCTAGCTATAGGTGGAACATG 59.301 44.000 24.96 19.05 42.58 3.21
2798 7633 4.785173 AATGATATACTCCCTCCTCCCA 57.215 45.455 0.00 0.00 0.00 4.37
2799 7634 5.311554 AATGATATACTCCCTCCTCCCAT 57.688 43.478 0.00 0.00 0.00 4.00
2800 7635 6.438111 AATGATATACTCCCTCCTCCCATA 57.562 41.667 0.00 0.00 0.00 2.74
2801 7636 5.896530 TGATATACTCCCTCCTCCCATAA 57.103 43.478 0.00 0.00 0.00 1.90
2802 7637 6.438111 TGATATACTCCCTCCTCCCATAAT 57.562 41.667 0.00 0.00 0.00 1.28
2803 7638 7.554597 TGATATACTCCCTCCTCCCATAATA 57.445 40.000 0.00 0.00 0.00 0.98
2804 7639 8.143167 TGATATACTCCCTCCTCCCATAATAT 57.857 38.462 0.00 0.00 0.00 1.28
2805 7640 9.262117 TGATATACTCCCTCCTCCCATAATATA 57.738 37.037 0.00 0.00 0.00 0.86
2808 7643 6.500490 ACTCCCTCCTCCCATAATATAAGA 57.500 41.667 0.00 0.00 0.00 2.10
2809 7644 6.507568 ACTCCCTCCTCCCATAATATAAGAG 58.492 44.000 0.00 0.00 0.00 2.85
2810 7645 5.281314 TCCCTCCTCCCATAATATAAGAGC 58.719 45.833 0.00 0.00 0.00 4.09
2811 7646 4.100189 CCCTCCTCCCATAATATAAGAGCG 59.900 50.000 0.00 0.00 0.00 5.03
2812 7647 4.712337 CCTCCTCCCATAATATAAGAGCGT 59.288 45.833 0.00 0.00 0.00 5.07
2813 7648 5.187967 CCTCCTCCCATAATATAAGAGCGTT 59.812 44.000 0.00 0.00 0.00 4.84
2814 7649 6.295916 CCTCCTCCCATAATATAAGAGCGTTT 60.296 42.308 0.00 0.00 0.00 3.60
2852 7687 5.570320 AGTTTTAGATGGCAGTGGTGTATT 58.430 37.500 0.00 0.00 0.00 1.89
2940 7783 6.101997 TCTATCCGCATATTTGTCTGCATAG 58.898 40.000 0.00 0.00 38.30 2.23
2999 7842 6.373005 TGTCACAGGAGGATTCAAAATCTA 57.627 37.500 0.18 0.00 0.00 1.98
3112 7955 3.618351 AGCTTTGATCAAGGATGGTGAG 58.382 45.455 20.77 8.27 32.37 3.51
3143 7986 2.857483 CAGAGATAGAGGCCTTCTCGA 58.143 52.381 21.83 1.90 46.82 4.04
3154 7997 2.360165 GGCCTTCTCGATTTGCATTGAT 59.640 45.455 0.00 0.00 0.00 2.57
3198 8485 4.278170 TCTTGTGAGAAAAATCATGGCGTT 59.722 37.500 0.00 0.00 0.00 4.84
3209 8496 4.946784 ATCATGGCGTTGTTTTAGAGAC 57.053 40.909 0.00 0.00 0.00 3.36
3269 8556 9.620259 GGTGATTCTTTATCTCTGTTCCTAATT 57.380 33.333 0.00 0.00 34.17 1.40
3289 8576 8.925700 CCTAATTGATGGTGTTTTAAGCTTTTC 58.074 33.333 3.20 0.00 0.00 2.29
3332 8620 8.621286 TCTTTCCTTGTTGTTTTAGAAGTCATC 58.379 33.333 0.00 0.00 0.00 2.92
3410 8701 8.673711 TCTGTTGCATAATAACTGAAATGGTAC 58.326 33.333 0.00 0.00 34.47 3.34
3467 8812 9.686683 AACTAGTTAGGTTTATTCAGATTGCAT 57.313 29.630 6.26 0.00 0.00 3.96
3567 8920 8.995027 ACATATTATTATTTCCTGCACTTGGA 57.005 30.769 0.00 0.00 0.00 3.53
3568 8921 9.420118 ACATATTATTATTTCCTGCACTTGGAA 57.580 29.630 1.89 1.89 41.33 3.53
3585 8938 6.675515 CTTGGAAAGTTAAGAATCGTTTGC 57.324 37.500 0.00 0.00 39.70 3.68
3586 8939 5.116069 TGGAAAGTTAAGAATCGTTTGCC 57.884 39.130 0.00 0.00 0.00 4.52
3587 8940 4.022676 TGGAAAGTTAAGAATCGTTTGCCC 60.023 41.667 0.00 0.00 0.00 5.36
3588 8941 4.022676 GGAAAGTTAAGAATCGTTTGCCCA 60.023 41.667 0.00 0.00 0.00 5.36
3590 8943 3.751518 AGTTAAGAATCGTTTGCCCAGT 58.248 40.909 0.00 0.00 0.00 4.00
3593 8946 5.766174 AGTTAAGAATCGTTTGCCCAGTTTA 59.234 36.000 0.00 0.00 0.00 2.01
3594 8947 6.263617 AGTTAAGAATCGTTTGCCCAGTTTAA 59.736 34.615 0.00 0.00 0.00 1.52
3596 8949 6.827586 AAGAATCGTTTGCCCAGTTTAATA 57.172 33.333 0.00 0.00 0.00 0.98
3597 8950 7.404671 AAGAATCGTTTGCCCAGTTTAATAT 57.595 32.000 0.00 0.00 0.00 1.28
3598 8951 8.514330 AAGAATCGTTTGCCCAGTTTAATATA 57.486 30.769 0.00 0.00 0.00 0.86
3599 8952 8.154649 AGAATCGTTTGCCCAGTTTAATATAG 57.845 34.615 0.00 0.00 0.00 1.31
3601 8954 8.691661 AATCGTTTGCCCAGTTTAATATAGAT 57.308 30.769 0.00 0.00 0.00 1.98
3602 8955 9.787435 AATCGTTTGCCCAGTTTAATATAGATA 57.213 29.630 0.00 0.00 0.00 1.98
3603 8956 8.827177 TCGTTTGCCCAGTTTAATATAGATAG 57.173 34.615 0.00 0.00 0.00 2.08
3605 8958 9.701098 CGTTTGCCCAGTTTAATATAGATAGTA 57.299 33.333 0.00 0.00 0.00 1.82
3626 8979 4.237349 ACATAAAGAAAGTGGGCAAACG 57.763 40.909 0.00 0.00 0.00 3.60
3641 8994 5.067936 TGGGCAAACGATTCTTAACTTTTCA 59.932 36.000 0.00 0.00 0.00 2.69
3642 8995 6.156519 GGGCAAACGATTCTTAACTTTTCAT 58.843 36.000 0.00 0.00 0.00 2.57
3645 8998 6.308041 GCAAACGATTCTTAACTTTTCATCCC 59.692 38.462 0.00 0.00 0.00 3.85
3824 9178 1.618837 GACAGGGCAGTAGACAGTTCA 59.381 52.381 0.00 0.00 0.00 3.18
3826 9180 2.224305 ACAGGGCAGTAGACAGTTCAAC 60.224 50.000 0.00 0.00 0.00 3.18
3852 9206 4.410400 CAAGTGCCCTCCCGTCCC 62.410 72.222 0.00 0.00 0.00 4.46
3859 9213 2.448542 CCTCCCGTCCCCATGGAT 60.449 66.667 15.22 0.00 44.28 3.41
3890 9250 3.453424 CCATGGCATGATGTCAAATGTG 58.547 45.455 28.43 0.00 34.67 3.21
3905 9265 0.889186 ATGTGTCCTTTGACGGGTGC 60.889 55.000 0.00 0.00 44.86 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 164 0.671163 GGCGACCGTTTACATGTGGA 60.671 55.000 9.11 0.00 0.00 4.02
227 228 0.179020 TCTGGCAAGGTGAAGTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
288 289 3.063052 GCCAGTACGCGCGTTGTAC 62.063 63.158 42.10 31.56 41.94 2.90
372 384 2.000429 AAACGACCGAGATTAACCCG 58.000 50.000 0.00 0.00 0.00 5.28
374 386 6.413018 ACATAAAAACGACCGAGATTAACC 57.587 37.500 0.00 0.00 0.00 2.85
403 415 1.672363 CTTCTGCTTCAGTGTGCACAA 59.328 47.619 23.59 2.66 35.20 3.33
429 442 8.188139 CGGTTTGTTAGGCAGTGATAATTTTAT 58.812 33.333 0.00 0.00 0.00 1.40
514 2909 1.327764 GAAGGATAAGTTGCGGCTTCG 59.672 52.381 0.00 0.00 0.00 3.79
548 2951 4.562757 CCGAGTCAACAACAGAAGGGATTA 60.563 45.833 0.00 0.00 0.00 1.75
553 2974 0.868406 GCCGAGTCAACAACAGAAGG 59.132 55.000 0.00 0.00 0.00 3.46
565 2986 2.743928 CTGGTTGGCTGCCGAGTC 60.744 66.667 14.98 8.13 0.00 3.36
671 3133 0.757188 GGAGGCGGAGGAAGATCTCA 60.757 60.000 0.00 0.00 35.58 3.27
858 3335 3.782443 GTGAATCCGGCGGAGGGT 61.782 66.667 33.82 21.18 34.05 4.34
901 3390 1.182667 TAGACATCGACCCACCAGTG 58.817 55.000 0.00 0.00 0.00 3.66
907 3402 3.878237 AGGACTATAGACATCGACCCA 57.122 47.619 6.78 0.00 0.00 4.51
916 3411 2.483188 CGCCAACCCAAGGACTATAGAC 60.483 54.545 6.78 0.00 0.00 2.59
923 3418 4.660938 AGCCGCCAACCCAAGGAC 62.661 66.667 0.00 0.00 0.00 3.85
1006 3516 2.747855 CTTGGGGCGGAGAAGCAC 60.748 66.667 0.00 0.00 40.45 4.40
1056 3566 0.698818 AGGAGAATGTGTGGAACCCC 59.301 55.000 0.00 0.00 34.36 4.95
1100 3610 1.207089 CCTGACGGACACATACCACAT 59.793 52.381 0.00 0.00 0.00 3.21
1144 3654 2.037121 TGTCCGATGAGAAGACAGCAAA 59.963 45.455 0.00 0.00 35.67 3.68
1243 3753 4.751098 GCATTGCCAACATATAAACCCATG 59.249 41.667 0.00 0.00 0.00 3.66
1281 3791 1.763968 TGTACTCGCTGATAGCCACT 58.236 50.000 0.00 0.00 38.18 4.00
1352 3862 1.609501 TGTACCGCTCTCAAGGGCT 60.610 57.895 0.00 0.00 34.22 5.19
1364 3874 6.090129 CCAATCTTAAATGTTTGGTGTACCG 58.910 40.000 0.00 0.00 39.43 4.02
1467 3977 1.212616 CAAATCTCTCGATGCCGTCC 58.787 55.000 0.00 0.00 37.05 4.79
1533 4043 5.738619 TTGTATCTTCCACTGAACAGCTA 57.261 39.130 1.46 0.00 0.00 3.32
1566 4076 3.731089 ACCGTTGAAAACCGTTATGAGA 58.269 40.909 0.00 0.00 46.28 3.27
1569 4079 4.799428 ACAAAACCGTTGAAAACCGTTATG 59.201 37.500 0.00 0.00 45.14 1.90
1698 4243 1.009829 GAAGACAGGCCGCTGTATTG 58.990 55.000 9.51 0.00 38.65 1.90
1703 4248 3.710722 AGGGAAGACAGGCCGCTG 61.711 66.667 0.00 0.00 0.00 5.18
1725 4272 1.003051 GGAGGCCAGGAGTAGGGAA 59.997 63.158 5.01 0.00 0.00 3.97
1804 4374 7.041635 TCATTGCATACAATTTATGGACCAG 57.958 36.000 0.00 0.00 44.21 4.00
1915 4509 2.103941 GGAATAGCACTGCTAGCTCCTT 59.896 50.000 23.36 11.98 44.66 3.36
2034 4735 7.126726 ACCTGCATAAACCCTCTTGTAGTAATA 59.873 37.037 0.00 0.00 0.00 0.98
2115 4851 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
2116 4852 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
2117 4853 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
2118 4854 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
2119 4855 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2120 4856 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2121 4857 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2122 4858 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
2123 4859 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
2124 4860 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
2146 4882 2.757868 CTCCGTCCCATAATGCCAAAAA 59.242 45.455 0.00 0.00 0.00 1.94
2147 4883 2.374184 CTCCGTCCCATAATGCCAAAA 58.626 47.619 0.00 0.00 0.00 2.44
2148 4884 1.409521 CCTCCGTCCCATAATGCCAAA 60.410 52.381 0.00 0.00 0.00 3.28
2149 4885 0.182537 CCTCCGTCCCATAATGCCAA 59.817 55.000 0.00 0.00 0.00 4.52
2150 4886 1.705002 CCCTCCGTCCCATAATGCCA 61.705 60.000 0.00 0.00 0.00 4.92
2151 4887 1.073199 CCCTCCGTCCCATAATGCC 59.927 63.158 0.00 0.00 0.00 4.40
2152 4888 0.035458 CTCCCTCCGTCCCATAATGC 59.965 60.000 0.00 0.00 0.00 3.56
2153 4889 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2154 4890 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
2155 4891 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
2156 4892 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
2157 4893 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
2158 4894 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
2159 4895 0.396695 TCATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
2160 4896 1.481871 TTCATGTACTCCCTCCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
2161 4897 3.305471 GCTATTCATGTACTCCCTCCGTC 60.305 52.174 0.00 0.00 0.00 4.79
2162 4898 2.628657 GCTATTCATGTACTCCCTCCGT 59.371 50.000 0.00 0.00 0.00 4.69
2163 4899 2.028930 GGCTATTCATGTACTCCCTCCG 60.029 54.545 0.00 0.00 0.00 4.63
2164 4900 3.243724 AGGCTATTCATGTACTCCCTCC 58.756 50.000 0.00 0.00 0.00 4.30
2165 4901 5.326069 TCTAGGCTATTCATGTACTCCCTC 58.674 45.833 0.00 0.00 0.00 4.30
2166 4902 5.340891 TCTAGGCTATTCATGTACTCCCT 57.659 43.478 0.00 0.00 0.00 4.20
2167 4903 6.613153 AATCTAGGCTATTCATGTACTCCC 57.387 41.667 0.00 0.00 0.00 4.30
2168 4904 9.810545 GATAAATCTAGGCTATTCATGTACTCC 57.189 37.037 0.00 0.00 0.00 3.85
2328 5085 5.833131 ACCTTACCATTGGGCATATAACTTG 59.167 40.000 7.78 0.00 37.90 3.16
2337 5103 3.252554 AGAAAACCTTACCATTGGGCA 57.747 42.857 7.78 0.00 37.90 5.36
2338 5104 4.283467 AGAAAGAAAACCTTACCATTGGGC 59.717 41.667 7.78 0.00 33.32 5.36
2339 5105 5.047306 GGAGAAAGAAAACCTTACCATTGGG 60.047 44.000 7.78 0.00 35.34 4.12
2340 5106 5.775195 AGGAGAAAGAAAACCTTACCATTGG 59.225 40.000 0.00 0.00 34.00 3.16
2341 5107 6.901081 AGGAGAAAGAAAACCTTACCATTG 57.099 37.500 0.00 0.00 34.00 2.82
2342 5108 7.914427 AAAGGAGAAAGAAAACCTTACCATT 57.086 32.000 0.00 0.00 41.14 3.16
2343 5109 7.914427 AAAAGGAGAAAGAAAACCTTACCAT 57.086 32.000 0.00 0.00 41.14 3.55
2344 5110 8.826293 TTAAAAGGAGAAAGAAAACCTTACCA 57.174 30.769 0.00 0.00 41.14 3.25
2422 5188 7.397221 TCACTGACATTGAATTATGAAGGACT 58.603 34.615 0.00 0.00 0.00 3.85
2463 5236 8.432359 TCATGTTGCGTACGAATGAATATATTC 58.568 33.333 21.65 17.09 37.31 1.75
2522 5295 5.713389 AGTGCCATTGGGATAATCATGTATG 59.287 40.000 4.53 0.00 35.59 2.39
2523 5296 5.895807 AGTGCCATTGGGATAATCATGTAT 58.104 37.500 4.53 0.00 35.59 2.29
2524 5297 5.323382 AGTGCCATTGGGATAATCATGTA 57.677 39.130 4.53 0.00 35.59 2.29
2574 5351 1.933181 GCACTAGATATGTGTTGCGCA 59.067 47.619 5.66 5.66 37.70 6.09
2611 5390 8.438676 ACTTAACAGATGGCTAATACATGTTC 57.561 34.615 2.30 0.00 0.00 3.18
2613 5392 6.992715 GGACTTAACAGATGGCTAATACATGT 59.007 38.462 2.69 2.69 0.00 3.21
2614 5393 6.146184 CGGACTTAACAGATGGCTAATACATG 59.854 42.308 0.00 0.00 0.00 3.21
2617 5435 5.598769 ACGGACTTAACAGATGGCTAATAC 58.401 41.667 0.00 0.00 0.00 1.89
2784 7619 7.614473 TCTTATATTATGGGAGGAGGGAGTA 57.386 40.000 0.00 0.00 0.00 2.59
2785 7620 6.500490 TCTTATATTATGGGAGGAGGGAGT 57.500 41.667 0.00 0.00 0.00 3.85
2787 7622 5.281314 GCTCTTATATTATGGGAGGAGGGA 58.719 45.833 8.67 0.00 0.00 4.20
2788 7623 4.100189 CGCTCTTATATTATGGGAGGAGGG 59.900 50.000 0.00 0.00 0.00 4.30
2789 7624 4.712337 ACGCTCTTATATTATGGGAGGAGG 59.288 45.833 8.67 0.00 0.00 4.30
2790 7625 5.923733 ACGCTCTTATATTATGGGAGGAG 57.076 43.478 8.67 0.00 0.00 3.69
2791 7626 6.681729 AAACGCTCTTATATTATGGGAGGA 57.318 37.500 8.67 0.00 0.00 3.71
2792 7627 8.095169 ACTAAAACGCTCTTATATTATGGGAGG 58.905 37.037 8.67 4.03 0.00 4.30
2805 7640 9.708092 ACTTTCTAAATCTACTAAAACGCTCTT 57.292 29.630 0.00 0.00 0.00 2.85
2806 7641 9.708092 AACTTTCTAAATCTACTAAAACGCTCT 57.292 29.630 0.00 0.00 0.00 4.09
2921 7756 4.395581 GTCTATGCAGACAAATATGCGG 57.604 45.455 1.41 0.00 46.47 5.69
2968 7811 4.598036 ATCCTCCTGTGACAAAATGGAT 57.402 40.909 4.11 4.11 0.00 3.41
2999 7842 2.946990 CAACACCGTTTCCAGTAACCTT 59.053 45.455 0.00 0.00 0.00 3.50
3089 7932 3.760151 TCACCATCCTTGATCAAAGCTTG 59.240 43.478 9.88 4.98 34.24 4.01
3143 7986 3.758023 TCGTCCTCAACATCAATGCAAAT 59.242 39.130 0.00 0.00 0.00 2.32
3154 7997 3.223435 AGAGTTCTTCTCGTCCTCAACA 58.777 45.455 0.00 0.00 46.86 3.33
3184 8027 6.640907 GTCTCTAAAACAACGCCATGATTTTT 59.359 34.615 0.00 0.00 0.00 1.94
3198 8485 5.779529 AGGTACAAGTCGTCTCTAAAACA 57.220 39.130 0.00 0.00 0.00 2.83
3209 8496 5.034554 TGTACGTTTCTAGGTACAAGTCG 57.965 43.478 0.00 2.48 46.71 4.18
3269 8556 6.707440 TGAGAAAAGCTTAAAACACCATCA 57.293 33.333 0.00 0.00 0.00 3.07
3289 8576 7.872113 AGGAAAGATTTAATACCAAGCTGAG 57.128 36.000 0.00 0.00 0.00 3.35
3332 8620 4.686091 TCTTCAAACTCGCTCACACATAAG 59.314 41.667 0.00 0.00 0.00 1.73
3566 8919 5.116069 TGGGCAAACGATTCTTAACTTTC 57.884 39.130 0.00 0.00 0.00 2.62
3567 8920 4.583073 ACTGGGCAAACGATTCTTAACTTT 59.417 37.500 0.00 0.00 0.00 2.66
3568 8921 4.142038 ACTGGGCAAACGATTCTTAACTT 58.858 39.130 0.00 0.00 0.00 2.66
3570 8923 4.499037 AACTGGGCAAACGATTCTTAAC 57.501 40.909 0.00 0.00 0.00 2.01
3573 8926 5.722021 ATTAAACTGGGCAAACGATTCTT 57.278 34.783 0.00 0.00 0.00 2.52
3576 8929 8.691661 ATCTATATTAAACTGGGCAAACGATT 57.308 30.769 0.00 0.00 0.00 3.34
3577 8930 9.436957 CTATCTATATTAAACTGGGCAAACGAT 57.563 33.333 0.00 0.00 0.00 3.73
3579 8932 8.603242 ACTATCTATATTAAACTGGGCAAACG 57.397 34.615 0.00 0.00 0.00 3.60
3596 8949 8.934697 TGCCCACTTTCTTTATGTACTATCTAT 58.065 33.333 0.00 0.00 0.00 1.98
3597 8950 8.313944 TGCCCACTTTCTTTATGTACTATCTA 57.686 34.615 0.00 0.00 0.00 1.98
3598 8951 7.195374 TGCCCACTTTCTTTATGTACTATCT 57.805 36.000 0.00 0.00 0.00 1.98
3599 8952 7.859325 TTGCCCACTTTCTTTATGTACTATC 57.141 36.000 0.00 0.00 0.00 2.08
3601 8954 6.148150 CGTTTGCCCACTTTCTTTATGTACTA 59.852 38.462 0.00 0.00 0.00 1.82
3602 8955 5.048991 CGTTTGCCCACTTTCTTTATGTACT 60.049 40.000 0.00 0.00 0.00 2.73
3603 8956 5.049267 TCGTTTGCCCACTTTCTTTATGTAC 60.049 40.000 0.00 0.00 0.00 2.90
3605 8958 3.886505 TCGTTTGCCCACTTTCTTTATGT 59.113 39.130 0.00 0.00 0.00 2.29
3606 8959 4.497473 TCGTTTGCCCACTTTCTTTATG 57.503 40.909 0.00 0.00 0.00 1.90
3607 8960 5.476945 AGAATCGTTTGCCCACTTTCTTTAT 59.523 36.000 0.00 0.00 0.00 1.40
3608 8961 4.825085 AGAATCGTTTGCCCACTTTCTTTA 59.175 37.500 0.00 0.00 0.00 1.85
3609 8962 3.636764 AGAATCGTTTGCCCACTTTCTTT 59.363 39.130 0.00 0.00 0.00 2.52
3610 8963 3.222603 AGAATCGTTTGCCCACTTTCTT 58.777 40.909 0.00 0.00 0.00 2.52
3611 8964 2.863809 AGAATCGTTTGCCCACTTTCT 58.136 42.857 0.00 0.00 0.00 2.52
3612 8965 3.643159 AAGAATCGTTTGCCCACTTTC 57.357 42.857 0.00 0.00 0.00 2.62
3626 8979 6.813649 GGCAAAGGGATGAAAAGTTAAGAATC 59.186 38.462 0.00 0.00 0.00 2.52
3641 8994 4.026052 CTGGTAGAAAATGGCAAAGGGAT 58.974 43.478 0.00 0.00 0.00 3.85
3642 8995 3.181423 ACTGGTAGAAAATGGCAAAGGGA 60.181 43.478 0.00 0.00 0.00 4.20
3645 8998 7.865706 ATAGTACTGGTAGAAAATGGCAAAG 57.134 36.000 5.39 0.00 0.00 2.77
3678 9031 9.740710 AAGTTTAAATTAGATAGACAGCCTGTT 57.259 29.630 0.00 0.00 0.00 3.16
3710 9063 7.556844 TCCCTCAGATACTAGTTTCATTCAAC 58.443 38.462 14.67 0.00 0.00 3.18
3824 9178 3.007635 GAGGGCACTTGCTATTAACGTT 58.992 45.455 5.88 5.88 41.70 3.99
3826 9180 1.940613 GGAGGGCACTTGCTATTAACG 59.059 52.381 0.00 0.00 41.70 3.18
3868 9228 2.159014 ACATTTGACATCATGCCATGGC 60.159 45.455 30.54 30.54 42.35 4.40
3890 9250 2.112297 TGGCACCCGTCAAAGGAC 59.888 61.111 0.00 0.00 40.77 3.85
3901 9261 4.576463 CAGAATATAGGTTGAAGTGGCACC 59.424 45.833 15.27 0.00 0.00 5.01
3905 9265 8.335532 TGAAAACAGAATATAGGTTGAAGTGG 57.664 34.615 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.