Multiple sequence alignment - TraesCS2B01G498400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G498400 chr2B 100.000 4086 0 0 1 4086 694989391 694993476 0.000000e+00 7546.0
1 TraesCS2B01G498400 chr2D 93.370 2760 131 22 882 3608 577603382 577600642 0.000000e+00 4036.0
2 TraesCS2B01G498400 chr2D 89.873 316 28 2 154 469 577606310 577605999 1.770000e-108 403.0
3 TraesCS2B01G498400 chr2D 76.113 494 74 26 2386 2850 582493030 582493508 6.880000e-53 219.0
4 TraesCS2B01G498400 chr2D 81.633 147 20 7 883 1026 477064998 477064856 9.280000e-22 115.0
5 TraesCS2B01G498400 chr2A 95.857 1231 45 3 1596 2822 715813324 715814552 0.000000e+00 1986.0
6 TraesCS2B01G498400 chr2A 92.895 563 18 9 934 1476 715812525 715813085 0.000000e+00 798.0
7 TraesCS2B01G498400 chr2A 92.424 528 24 8 3091 3608 715814572 715815093 0.000000e+00 739.0
8 TraesCS2B01G498400 chr2A 88.162 321 36 2 482 801 715812134 715812453 8.290000e-102 381.0
9 TraesCS2B01G498400 chr2A 91.364 220 19 0 250 469 715811077 715811296 6.640000e-78 302.0
10 TraesCS2B01G498400 chr2A 91.852 135 11 0 1463 1597 715813098 715813232 5.390000e-44 189.0
11 TraesCS2B01G498400 chrUn 98.945 474 4 1 3613 4086 36531939 36531467 0.000000e+00 846.0
12 TraesCS2B01G498400 chr7A 98.812 421 3 2 3613 4032 628652539 628652120 0.000000e+00 749.0
13 TraesCS2B01G498400 chr7A 100.000 228 0 0 3859 4086 628651982 628651755 4.880000e-114 422.0
14 TraesCS2B01G498400 chr7A 92.000 150 12 0 4 153 339589235 339589384 1.150000e-50 211.0
15 TraesCS2B01G498400 chr4B 99.670 303 0 1 3784 4086 601298619 601298920 1.660000e-153 553.0
16 TraesCS2B01G498400 chr4B 98.726 157 2 0 3632 3788 601298266 601298422 3.110000e-71 279.0
17 TraesCS2B01G498400 chr4B 93.548 93 6 0 799 891 2431980 2431888 5.510000e-29 139.0
18 TraesCS2B01G498400 chr4B 87.013 77 9 1 3899 3975 552025034 552024959 7.280000e-13 86.1
19 TraesCS2B01G498400 chr3D 81.276 486 76 13 1596 2077 297677659 297678133 2.980000e-101 379.0
20 TraesCS2B01G498400 chr3D 82.102 352 32 20 2198 2543 297678198 297678524 5.200000e-69 272.0
21 TraesCS2B01G498400 chr3D 92.667 150 11 0 4 153 505432984 505433133 2.470000e-52 217.0
22 TraesCS2B01G498400 chr3A 81.474 475 73 12 1596 2066 394648727 394649190 3.860000e-100 375.0
23 TraesCS2B01G498400 chr3A 81.250 352 34 21 2198 2543 394649264 394649589 5.240000e-64 255.0
24 TraesCS2B01G498400 chr3A 94.444 90 4 1 795 884 208070022 208069934 1.980000e-28 137.0
25 TraesCS2B01G498400 chr3A 90.476 63 4 2 3870 3930 164276037 164276099 9.410000e-12 82.4
26 TraesCS2B01G498400 chr3B 80.361 443 72 13 1596 2034 392797764 392798195 5.090000e-84 322.0
27 TraesCS2B01G498400 chr3B 81.586 353 31 22 2198 2543 392809545 392809870 1.130000e-65 261.0
28 TraesCS2B01G498400 chr5D 91.558 154 13 0 4 157 421764709 421764862 3.200000e-51 213.0
29 TraesCS2B01G498400 chr7D 91.558 154 12 1 4 156 330558403 330558250 1.150000e-50 211.0
30 TraesCS2B01G498400 chr7B 92.053 151 10 2 4 153 220339260 220339111 1.150000e-50 211.0
31 TraesCS2B01G498400 chr6D 92.000 150 12 0 4 153 190683804 190683953 1.150000e-50 211.0
32 TraesCS2B01G498400 chr5B 92.000 150 12 0 4 153 217704144 217703995 1.150000e-50 211.0
33 TraesCS2B01G498400 chr5B 94.382 89 5 0 799 887 103572054 103572142 1.980000e-28 137.0
34 TraesCS2B01G498400 chr5B 94.382 89 5 0 799 887 559465933 559465845 1.980000e-28 137.0
35 TraesCS2B01G498400 chr5B 94.382 89 5 0 799 887 616906787 616906875 1.980000e-28 137.0
36 TraesCS2B01G498400 chr5B 85.057 87 13 0 707 793 450837159 450837073 5.630000e-14 89.8
37 TraesCS2B01G498400 chr5A 91.503 153 12 1 4 155 115886805 115886653 4.140000e-50 209.0
38 TraesCS2B01G498400 chr5A 95.402 87 4 0 800 886 398722210 398722124 5.510000e-29 139.0
39 TraesCS2B01G498400 chr5A 88.679 106 10 2 788 891 496022111 496022216 1.190000e-25 128.0
40 TraesCS2B01G498400 chr4D 91.447 152 13 0 5 156 34727735 34727584 4.140000e-50 209.0
41 TraesCS2B01G498400 chr1D 93.333 90 6 0 798 887 447863806 447863717 2.560000e-27 134.0
42 TraesCS2B01G498400 chr1D 92.308 52 4 0 730 781 323917116 323917167 1.580000e-09 75.0
43 TraesCS2B01G498400 chr1B 87.179 117 11 3 799 911 7067202 7067318 3.310000e-26 130.0
44 TraesCS2B01G498400 chr4A 79.104 134 27 1 895 1028 642558508 642558640 1.560000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G498400 chr2B 694989391 694993476 4085 False 7546.0 7546 100.000000 1 4086 1 chr2B.!!$F1 4085
1 TraesCS2B01G498400 chr2D 577600642 577606310 5668 True 2219.5 4036 91.621500 154 3608 2 chr2D.!!$R2 3454
2 TraesCS2B01G498400 chr2A 715811077 715815093 4016 False 732.5 1986 92.092333 250 3608 6 chr2A.!!$F1 3358
3 TraesCS2B01G498400 chr7A 628651755 628652539 784 True 585.5 749 99.406000 3613 4086 2 chr7A.!!$R1 473
4 TraesCS2B01G498400 chr4B 601298266 601298920 654 False 416.0 553 99.198000 3632 4086 2 chr4B.!!$F1 454
5 TraesCS2B01G498400 chr3D 297677659 297678524 865 False 325.5 379 81.689000 1596 2543 2 chr3D.!!$F2 947
6 TraesCS2B01G498400 chr3A 394648727 394649589 862 False 315.0 375 81.362000 1596 2543 2 chr3A.!!$F2 947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.038892 TAGGCGACGGTTCAGAACAC 60.039 55.0 15.36 3.95 0.00 3.32 F
1022 3367 0.037697 ACGTTCGCCAGTTATGAGCA 60.038 50.0 0.00 0.00 0.00 4.26 F
1488 3878 0.036388 TTCCCTCGTGGATGCTCAAC 60.036 55.0 4.76 0.00 44.66 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1288 3652 0.598680 CCAATCAGATCTCCGCCGTC 60.599 60.0 0.0 0.0 0.00 4.79 R
2948 5442 0.244994 GCCTGAGCAGAAACTCTCGA 59.755 55.0 0.0 0.0 39.53 4.04 R
3154 5648 1.034838 ACAAGACAAAGGTTGCCGCA 61.035 50.0 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.633657 GTTGAGCGTGTGTGCCAG 59.366 61.111 0.00 0.00 34.65 4.85
18 19 2.591429 TTGAGCGTGTGTGCCAGG 60.591 61.111 0.00 0.00 34.65 4.45
19 20 3.100503 TTGAGCGTGTGTGCCAGGA 62.101 57.895 0.00 0.00 34.65 3.86
20 21 2.740055 GAGCGTGTGTGCCAGGAG 60.740 66.667 0.00 0.00 34.65 3.69
21 22 4.320456 AGCGTGTGTGCCAGGAGG 62.320 66.667 0.00 0.00 34.65 4.30
31 32 4.224105 CCAGGAGGGCCTATCCTC 57.776 66.667 22.71 11.87 44.05 3.71
35 36 3.356837 GAGGGCCTATCCTCGACG 58.643 66.667 5.73 0.00 43.19 5.12
36 37 2.203509 AGGGCCTATCCTCGACGG 60.204 66.667 2.82 0.00 29.56 4.79
37 38 2.521224 GGGCCTATCCTCGACGGT 60.521 66.667 0.84 0.00 34.39 4.83
38 39 2.132352 GGGCCTATCCTCGACGGTT 61.132 63.158 0.84 0.00 34.39 4.44
39 40 1.683418 GGGCCTATCCTCGACGGTTT 61.683 60.000 0.84 0.00 34.39 3.27
40 41 0.177373 GGCCTATCCTCGACGGTTTT 59.823 55.000 0.00 0.00 0.00 2.43
41 42 1.406477 GGCCTATCCTCGACGGTTTTT 60.406 52.381 0.00 0.00 0.00 1.94
42 43 1.664151 GCCTATCCTCGACGGTTTTTG 59.336 52.381 0.00 0.00 0.00 2.44
43 44 2.277084 CCTATCCTCGACGGTTTTTGG 58.723 52.381 0.00 0.00 0.00 3.28
44 45 2.277084 CTATCCTCGACGGTTTTTGGG 58.723 52.381 0.00 0.00 0.00 4.12
45 46 0.399075 ATCCTCGACGGTTTTTGGGT 59.601 50.000 0.00 0.00 0.00 4.51
46 47 0.249996 TCCTCGACGGTTTTTGGGTC 60.250 55.000 0.00 0.00 0.00 4.46
48 49 3.721851 CGACGGTTTTTGGGTCGT 58.278 55.556 4.78 0.00 46.07 4.34
49 50 1.277440 CGACGGTTTTTGGGTCGTG 59.723 57.895 4.78 0.00 46.07 4.35
50 51 1.430707 CGACGGTTTTTGGGTCGTGT 61.431 55.000 4.78 0.00 46.07 4.49
51 52 1.580815 GACGGTTTTTGGGTCGTGTA 58.419 50.000 0.00 0.00 35.91 2.90
52 53 1.528161 GACGGTTTTTGGGTCGTGTAG 59.472 52.381 0.00 0.00 35.91 2.74
53 54 0.869730 CGGTTTTTGGGTCGTGTAGG 59.130 55.000 0.00 0.00 0.00 3.18
54 55 1.540797 CGGTTTTTGGGTCGTGTAGGA 60.541 52.381 0.00 0.00 0.00 2.94
55 56 2.574450 GGTTTTTGGGTCGTGTAGGAA 58.426 47.619 0.00 0.00 0.00 3.36
56 57 2.551032 GGTTTTTGGGTCGTGTAGGAAG 59.449 50.000 0.00 0.00 0.00 3.46
57 58 2.551032 GTTTTTGGGTCGTGTAGGAAGG 59.449 50.000 0.00 0.00 0.00 3.46
58 59 1.719529 TTTGGGTCGTGTAGGAAGGA 58.280 50.000 0.00 0.00 0.00 3.36
59 60 0.971386 TTGGGTCGTGTAGGAAGGAC 59.029 55.000 0.00 0.00 34.86 3.85
61 62 1.895966 GGTCGTGTAGGAAGGACCC 59.104 63.158 5.03 0.00 45.35 4.46
62 63 1.611474 GGTCGTGTAGGAAGGACCCC 61.611 65.000 5.03 0.00 45.35 4.95
63 64 1.305549 TCGTGTAGGAAGGACCCCC 60.306 63.158 0.00 0.00 40.05 5.40
77 78 2.042843 CCCCCTACCGCAGTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
78 79 2.128507 CCCCCTACCGCAGTCTCTC 61.129 68.421 0.00 0.00 0.00 3.20
79 80 1.379977 CCCCTACCGCAGTCTCTCA 60.380 63.158 0.00 0.00 0.00 3.27
80 81 1.668101 CCCCTACCGCAGTCTCTCAC 61.668 65.000 0.00 0.00 0.00 3.51
81 82 0.681564 CCCTACCGCAGTCTCTCACT 60.682 60.000 0.00 0.00 34.67 3.41
82 83 1.408405 CCCTACCGCAGTCTCTCACTA 60.408 57.143 0.00 0.00 32.21 2.74
83 84 1.944024 CCTACCGCAGTCTCTCACTAG 59.056 57.143 0.00 0.00 32.21 2.57
84 85 1.944024 CTACCGCAGTCTCTCACTAGG 59.056 57.143 0.00 0.00 37.84 3.02
85 86 1.316706 ACCGCAGTCTCTCACTAGGC 61.317 60.000 0.00 0.00 36.16 3.93
86 87 1.063327 CGCAGTCTCTCACTAGGCG 59.937 63.158 0.00 0.00 40.10 5.52
87 88 1.369839 CGCAGTCTCTCACTAGGCGA 61.370 60.000 0.00 0.00 45.84 5.54
88 89 0.099791 GCAGTCTCTCACTAGGCGAC 59.900 60.000 0.00 0.00 32.21 5.19
89 90 0.375454 CAGTCTCTCACTAGGCGACG 59.625 60.000 0.00 0.00 32.21 5.12
90 91 0.745128 AGTCTCTCACTAGGCGACGG 60.745 60.000 0.00 0.00 31.37 4.79
91 92 1.025647 GTCTCTCACTAGGCGACGGT 61.026 60.000 0.00 0.00 0.00 4.83
92 93 0.322277 TCTCTCACTAGGCGACGGTT 60.322 55.000 0.00 0.00 0.00 4.44
93 94 0.099082 CTCTCACTAGGCGACGGTTC 59.901 60.000 0.00 0.00 0.00 3.62
94 95 0.607217 TCTCACTAGGCGACGGTTCA 60.607 55.000 0.00 0.00 0.00 3.18
95 96 0.179161 CTCACTAGGCGACGGTTCAG 60.179 60.000 0.00 0.00 0.00 3.02
96 97 0.607217 TCACTAGGCGACGGTTCAGA 60.607 55.000 0.00 0.00 0.00 3.27
97 98 0.242825 CACTAGGCGACGGTTCAGAA 59.757 55.000 0.00 0.00 0.00 3.02
98 99 0.243095 ACTAGGCGACGGTTCAGAAC 59.757 55.000 4.52 4.52 0.00 3.01
99 100 0.242825 CTAGGCGACGGTTCAGAACA 59.757 55.000 15.36 0.00 0.00 3.18
100 101 0.038892 TAGGCGACGGTTCAGAACAC 60.039 55.000 15.36 3.95 0.00 3.32
101 102 1.300697 GGCGACGGTTCAGAACACT 60.301 57.895 15.36 0.00 0.00 3.55
102 103 1.557443 GGCGACGGTTCAGAACACTG 61.557 60.000 15.36 6.74 0.00 3.66
103 104 0.874607 GCGACGGTTCAGAACACTGT 60.875 55.000 15.36 9.79 36.40 3.55
104 105 1.129326 CGACGGTTCAGAACACTGTC 58.871 55.000 15.36 16.20 44.18 3.51
105 106 1.129326 GACGGTTCAGAACACTGTCG 58.871 55.000 15.36 10.84 40.00 4.35
106 107 0.874607 ACGGTTCAGAACACTGTCGC 60.875 55.000 15.36 0.00 33.82 5.19
107 108 1.853319 GGTTCAGAACACTGTCGCG 59.147 57.895 15.36 0.00 33.82 5.87
108 109 1.557443 GGTTCAGAACACTGTCGCGG 61.557 60.000 15.36 0.00 33.82 6.46
109 110 0.596600 GTTCAGAACACTGTCGCGGA 60.597 55.000 6.13 0.00 33.82 5.54
110 111 0.103390 TTCAGAACACTGTCGCGGAA 59.897 50.000 6.13 0.00 33.82 4.30
111 112 0.103390 TCAGAACACTGTCGCGGAAA 59.897 50.000 6.13 0.00 33.82 3.13
112 113 0.508641 CAGAACACTGTCGCGGAAAG 59.491 55.000 6.13 3.99 0.00 2.62
113 114 0.600255 AGAACACTGTCGCGGAAAGG 60.600 55.000 6.13 0.00 0.00 3.11
114 115 1.566018 GAACACTGTCGCGGAAAGGG 61.566 60.000 6.13 5.19 0.00 3.95
115 116 2.742372 CACTGTCGCGGAAAGGGG 60.742 66.667 6.13 0.00 0.00 4.79
116 117 3.239253 ACTGTCGCGGAAAGGGGT 61.239 61.111 6.13 0.00 0.00 4.95
117 118 2.032071 CTGTCGCGGAAAGGGGTT 59.968 61.111 6.13 0.00 0.00 4.11
118 119 1.294138 CTGTCGCGGAAAGGGGTTA 59.706 57.895 6.13 0.00 0.00 2.85
119 120 0.320946 CTGTCGCGGAAAGGGGTTAA 60.321 55.000 6.13 0.00 0.00 2.01
120 121 0.108207 TGTCGCGGAAAGGGGTTAAA 59.892 50.000 6.13 0.00 0.00 1.52
121 122 1.237533 GTCGCGGAAAGGGGTTAAAA 58.762 50.000 6.13 0.00 0.00 1.52
122 123 1.608109 GTCGCGGAAAGGGGTTAAAAA 59.392 47.619 6.13 0.00 0.00 1.94
123 124 1.608109 TCGCGGAAAGGGGTTAAAAAC 59.392 47.619 6.13 0.00 0.00 2.43
137 138 6.916401 GGTTAAAAACCGTTTGTATAGCAC 57.084 37.500 0.00 0.00 42.62 4.40
138 139 5.858049 GGTTAAAAACCGTTTGTATAGCACC 59.142 40.000 0.00 0.00 42.62 5.01
139 140 6.294120 GGTTAAAAACCGTTTGTATAGCACCT 60.294 38.462 0.00 0.00 42.62 4.00
140 141 5.366829 AAAAACCGTTTGTATAGCACCTC 57.633 39.130 0.00 0.00 0.00 3.85
141 142 2.288961 ACCGTTTGTATAGCACCTCG 57.711 50.000 0.00 0.00 0.00 4.63
142 143 1.820519 ACCGTTTGTATAGCACCTCGA 59.179 47.619 0.00 0.00 0.00 4.04
143 144 2.429610 ACCGTTTGTATAGCACCTCGAT 59.570 45.455 0.00 0.00 0.00 3.59
144 145 2.794910 CCGTTTGTATAGCACCTCGATG 59.205 50.000 0.00 0.00 0.00 3.84
145 146 3.444916 CGTTTGTATAGCACCTCGATGT 58.555 45.455 0.00 0.00 0.00 3.06
146 147 4.498513 CCGTTTGTATAGCACCTCGATGTA 60.499 45.833 0.00 0.00 0.00 2.29
147 148 4.440103 CGTTTGTATAGCACCTCGATGTAC 59.560 45.833 0.00 0.00 0.00 2.90
148 149 4.579454 TTGTATAGCACCTCGATGTACC 57.421 45.455 0.00 0.00 0.00 3.34
149 150 3.558033 TGTATAGCACCTCGATGTACCA 58.442 45.455 0.00 0.00 0.00 3.25
150 151 3.568430 TGTATAGCACCTCGATGTACCAG 59.432 47.826 0.00 0.00 0.00 4.00
151 152 2.139323 TAGCACCTCGATGTACCAGT 57.861 50.000 0.00 0.00 0.00 4.00
152 153 0.532573 AGCACCTCGATGTACCAGTG 59.467 55.000 0.00 0.00 0.00 3.66
153 154 0.530744 GCACCTCGATGTACCAGTGA 59.469 55.000 0.00 0.00 0.00 3.41
154 155 1.736032 GCACCTCGATGTACCAGTGAC 60.736 57.143 0.00 0.00 0.00 3.67
155 156 1.544246 CACCTCGATGTACCAGTGACA 59.456 52.381 0.00 0.00 0.00 3.58
156 157 1.544691 ACCTCGATGTACCAGTGACAC 59.455 52.381 0.00 0.00 0.00 3.67
167 168 3.309296 ACCAGTGACACCCCTATATCTG 58.691 50.000 0.84 0.00 0.00 2.90
177 178 5.733154 ACACCCCTATATCTGCCATATTCAT 59.267 40.000 0.00 0.00 0.00 2.57
189 190 2.549754 CCATATTCATGACCAACCGAGC 59.450 50.000 0.00 0.00 33.67 5.03
201 202 3.237741 CCGAGCTCCCCTCCCATC 61.238 72.222 8.47 0.00 37.27 3.51
204 205 3.381049 AGCTCCCCTCCCATCCCT 61.381 66.667 0.00 0.00 0.00 4.20
212 213 1.534235 CTCCCATCCCTACTCCGGG 60.534 68.421 0.00 0.00 46.13 5.73
228 229 0.378962 CGGGCAACAAAGTTGTCGAA 59.621 50.000 16.43 0.00 41.31 3.71
229 230 1.596954 CGGGCAACAAAGTTGTCGAAG 60.597 52.381 16.43 5.74 41.31 3.79
230 231 1.269051 GGGCAACAAAGTTGTCGAAGG 60.269 52.381 11.09 0.00 41.31 3.46
243 244 2.041350 TGTCGAAGGAGTAGAGGGAGTT 59.959 50.000 0.00 0.00 0.00 3.01
294 295 3.797269 AGGGGAGGAGTAGAGAGAAAGAT 59.203 47.826 0.00 0.00 0.00 2.40
350 351 7.732140 TCATACCATCTTCTTCTAGTGATCCAT 59.268 37.037 0.00 0.00 0.00 3.41
357 358 7.560368 TCTTCTTCTAGTGATCCATCCTTTTC 58.440 38.462 0.00 0.00 0.00 2.29
367 368 2.238144 TCCATCCTTTTCCTCTGCTCAG 59.762 50.000 0.00 0.00 0.00 3.35
380 381 2.355193 GCTCAGTCGCCCCTCTCTT 61.355 63.158 0.00 0.00 0.00 2.85
424 425 3.505680 GCCACCTTGTATTGACACAATGA 59.494 43.478 7.16 0.00 37.75 2.57
427 428 5.009510 CCACCTTGTATTGACACAATGACAA 59.990 40.000 7.16 10.95 37.75 3.18
429 430 7.147312 CACCTTGTATTGACACAATGACAATT 58.853 34.615 10.84 0.00 39.07 2.32
460 461 2.425312 CCTCTAGTCACGAGCATGAGTT 59.575 50.000 0.00 0.00 34.10 3.01
534 2856 7.519032 TGACATATATACTTGATCGGTGTCA 57.481 36.000 6.11 6.11 40.51 3.58
535 2857 8.122472 TGACATATATACTTGATCGGTGTCAT 57.878 34.615 6.11 0.00 38.64 3.06
536 2858 8.028938 TGACATATATACTTGATCGGTGTCATG 58.971 37.037 6.11 0.00 38.64 3.07
557 2879 3.074412 GACTGGATTTGTTCATGACCGT 58.926 45.455 0.00 0.00 0.00 4.83
560 2882 3.750371 TGGATTTGTTCATGACCGTCTT 58.250 40.909 0.00 0.00 0.00 3.01
562 2884 3.181520 GGATTTGTTCATGACCGTCTTCG 60.182 47.826 0.00 0.00 0.00 3.79
571 2893 0.165944 GACCGTCTTCGCAATTGTGG 59.834 55.000 18.51 5.78 35.54 4.17
572 2894 0.534203 ACCGTCTTCGCAATTGTGGT 60.534 50.000 18.51 4.96 35.54 4.16
591 2913 2.029380 GGTCCCTTTGCATTGTAACCAC 60.029 50.000 0.00 0.00 0.00 4.16
593 2915 2.158385 TCCCTTTGCATTGTAACCACCT 60.158 45.455 0.00 0.00 0.00 4.00
596 2918 3.191371 CCTTTGCATTGTAACCACCTCTC 59.809 47.826 0.00 0.00 0.00 3.20
617 2939 3.705579 TCCCCCTTAATGTTTACGATCGA 59.294 43.478 24.34 2.23 0.00 3.59
625 2947 4.585955 ATGTTTACGATCGACCATAGCT 57.414 40.909 24.34 0.00 0.00 3.32
643 2965 6.037610 CCATAGCTCATAGGTTTCAAGTCAAC 59.962 42.308 0.00 0.00 0.00 3.18
651 2973 3.632145 AGGTTTCAAGTCAACTGCGAAAT 59.368 39.130 9.79 0.00 33.56 2.17
657 2979 3.626028 AGTCAACTGCGAAATGAAACC 57.374 42.857 0.00 0.00 0.00 3.27
679 3002 7.526142 ACCGTCACATGTCATCTAATAGTAT 57.474 36.000 0.00 0.00 0.00 2.12
688 3011 7.103745 TGTCATCTAATAGTATCCCCTCTGA 57.896 40.000 0.00 0.00 0.00 3.27
698 3021 5.685728 AGTATCCCCTCTGAAAACTAATGC 58.314 41.667 0.00 0.00 0.00 3.56
705 3028 4.761739 CCTCTGAAAACTAATGCAAGACCA 59.238 41.667 0.00 0.00 0.00 4.02
717 3040 8.714906 ACTAATGCAAGACCAGTAATATTACCT 58.285 33.333 19.74 8.71 34.19 3.08
721 3044 5.932883 GCAAGACCAGTAATATTACCTAGCC 59.067 44.000 19.74 7.88 34.19 3.93
732 3055 1.971481 TACCTAGCCGACATTCGCTA 58.029 50.000 0.00 0.00 38.82 4.26
738 3061 0.318275 GCCGACATTCGCTAGGAGAG 60.318 60.000 0.00 0.00 38.82 3.20
761 3084 1.195900 GTGGCAAGCGAACGTCATTTA 59.804 47.619 0.00 0.00 0.00 1.40
805 3128 4.374843 AAAAACAAACAACGGTACTCCC 57.625 40.909 0.00 0.00 0.00 4.30
806 3129 3.286329 AAACAAACAACGGTACTCCCT 57.714 42.857 0.00 0.00 0.00 4.20
807 3130 2.538512 ACAAACAACGGTACTCCCTC 57.461 50.000 0.00 0.00 0.00 4.30
808 3131 2.044758 ACAAACAACGGTACTCCCTCT 58.955 47.619 0.00 0.00 0.00 3.69
809 3132 3.233507 ACAAACAACGGTACTCCCTCTA 58.766 45.455 0.00 0.00 0.00 2.43
810 3133 3.836562 ACAAACAACGGTACTCCCTCTAT 59.163 43.478 0.00 0.00 0.00 1.98
811 3134 5.018809 ACAAACAACGGTACTCCCTCTATA 58.981 41.667 0.00 0.00 0.00 1.31
812 3135 5.481473 ACAAACAACGGTACTCCCTCTATAA 59.519 40.000 0.00 0.00 0.00 0.98
813 3136 6.014327 ACAAACAACGGTACTCCCTCTATAAA 60.014 38.462 0.00 0.00 0.00 1.40
814 3137 5.588958 ACAACGGTACTCCCTCTATAAAC 57.411 43.478 0.00 0.00 0.00 2.01
815 3138 5.267587 ACAACGGTACTCCCTCTATAAACT 58.732 41.667 0.00 0.00 0.00 2.66
816 3139 6.426587 ACAACGGTACTCCCTCTATAAACTA 58.573 40.000 0.00 0.00 0.00 2.24
817 3140 6.891908 ACAACGGTACTCCCTCTATAAACTAA 59.108 38.462 0.00 0.00 0.00 2.24
818 3141 7.562821 ACAACGGTACTCCCTCTATAAACTAAT 59.437 37.037 0.00 0.00 0.00 1.73
819 3142 7.521871 ACGGTACTCCCTCTATAAACTAATG 57.478 40.000 0.00 0.00 0.00 1.90
820 3143 7.065504 ACGGTACTCCCTCTATAAACTAATGT 58.934 38.462 0.00 0.00 0.00 2.71
821 3144 8.220559 ACGGTACTCCCTCTATAAACTAATGTA 58.779 37.037 0.00 0.00 0.00 2.29
822 3145 9.071276 CGGTACTCCCTCTATAAACTAATGTAA 57.929 37.037 0.00 0.00 0.00 2.41
826 3149 8.862085 ACTCCCTCTATAAACTAATGTAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
827 3150 7.883217 TCCCTCTATAAACTAATGTAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
828 3151 7.504911 TCCCTCTATAAACTAATGTAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
829 3152 8.142551 CCCTCTATAAACTAATGTAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
830 3153 9.530633 CCTCTATAAACTAATGTAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
836 3159 8.997621 AAACTAATGTAAGAGCGTTTAGATCA 57.002 30.769 0.00 0.00 37.82 2.92
837 3160 7.988904 ACTAATGTAAGAGCGTTTAGATCAC 57.011 36.000 0.00 0.00 37.82 3.06
838 3161 7.773149 ACTAATGTAAGAGCGTTTAGATCACT 58.227 34.615 0.00 0.00 37.82 3.41
839 3162 8.900781 ACTAATGTAAGAGCGTTTAGATCACTA 58.099 33.333 0.00 0.00 37.82 2.74
840 3163 9.731819 CTAATGTAAGAGCGTTTAGATCACTAA 57.268 33.333 0.00 0.00 37.82 2.24
841 3164 8.997621 AATGTAAGAGCGTTTAGATCACTAAA 57.002 30.769 0.00 0.00 43.52 1.85
842 3165 8.635877 ATGTAAGAGCGTTTAGATCACTAAAG 57.364 34.615 0.00 0.00 45.42 1.85
843 3166 7.600065 TGTAAGAGCGTTTAGATCACTAAAGT 58.400 34.615 0.00 0.00 45.42 2.66
844 3167 8.733458 TGTAAGAGCGTTTAGATCACTAAAGTA 58.267 33.333 0.00 0.00 45.42 2.24
845 3168 9.224058 GTAAGAGCGTTTAGATCACTAAAGTAG 57.776 37.037 0.00 0.00 45.42 2.57
846 3169 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
881 3204 9.793259 TGCTTTTATATTAGTTTATGGAGGGAG 57.207 33.333 0.00 0.00 0.00 4.30
882 3205 9.794719 GCTTTTATATTAGTTTATGGAGGGAGT 57.205 33.333 0.00 0.00 0.00 3.85
893 3216 9.293404 AGTTTATGGAGGGAGTAGTTTTTAAAC 57.707 33.333 0.00 0.00 39.17 2.01
906 3229 9.884636 AGTAGTTTTTAAACAAAAATGCCTTCT 57.115 25.926 7.97 0.00 41.30 2.85
911 3234 9.612066 TTTTTAAACAAAAATGCCTTCTCTGAT 57.388 25.926 0.00 0.00 36.94 2.90
922 3245 3.434984 GCCTTCTCTGATGAAACTGACAC 59.565 47.826 0.00 0.00 0.00 3.67
924 3247 4.302455 CTTCTCTGATGAAACTGACACGT 58.698 43.478 0.00 0.00 0.00 4.49
925 3248 4.322080 TCTCTGATGAAACTGACACGTT 57.678 40.909 0.00 0.00 0.00 3.99
926 3249 4.051237 TCTCTGATGAAACTGACACGTTG 58.949 43.478 0.00 0.00 0.00 4.10
929 3252 4.634004 TCTGATGAAACTGACACGTTGTTT 59.366 37.500 5.72 5.72 36.73 2.83
934 3257 4.023107 TGAAACTGACACGTTGTTTGGAAA 60.023 37.500 9.46 0.00 34.55 3.13
935 3258 4.506886 AACTGACACGTTGTTTGGAAAA 57.493 36.364 0.00 0.00 0.00 2.29
978 3323 8.601845 AAACTAAAAATGCCACCTAAAATGTC 57.398 30.769 0.00 0.00 0.00 3.06
980 3325 4.551702 AAAATGCCACCTAAAATGTCCC 57.448 40.909 0.00 0.00 0.00 4.46
982 3327 2.214376 TGCCACCTAAAATGTCCCAG 57.786 50.000 0.00 0.00 0.00 4.45
998 3343 1.278985 CCCAGTGTGTCATCCTTGCTA 59.721 52.381 0.00 0.00 0.00 3.49
1001 3346 1.002366 GTGTGTCATCCTTGCTAGCG 58.998 55.000 10.77 0.00 0.00 4.26
1022 3367 0.037697 ACGTTCGCCAGTTATGAGCA 60.038 50.000 0.00 0.00 0.00 4.26
1247 3611 1.713830 GTCCGCGATTACAAGGTGC 59.286 57.895 8.23 0.00 0.00 5.01
1276 3640 0.818040 CGCCGGAAAAATCCCCCTAG 60.818 60.000 5.05 0.00 0.00 3.02
1288 3652 2.790791 CCCCTAGTCTGCGCTGGAG 61.791 68.421 14.70 9.19 0.00 3.86
1488 3878 0.036388 TTCCCTCGTGGATGCTCAAC 60.036 55.000 4.76 0.00 44.66 3.18
1490 3880 0.742281 CCCTCGTGGATGCTCAACAG 60.742 60.000 4.76 0.00 35.39 3.16
1509 3899 3.002656 ACAGTCTGAACTTGCATTGTTCG 59.997 43.478 20.63 16.70 44.67 3.95
1511 3901 3.002656 AGTCTGAACTTGCATTGTTCGTG 59.997 43.478 20.63 17.06 44.67 4.35
1521 3912 2.650297 GCATTGTTCGTGCTCGTTTAAC 59.350 45.455 8.17 6.21 39.45 2.01
1545 3936 0.447801 CAAGCCTATGTGGACGCAAC 59.552 55.000 0.00 0.00 38.35 4.17
1564 3955 4.990426 GCAACATGTTTTTGCCTTCTGTAT 59.010 37.500 8.77 0.00 43.02 2.29
1709 4194 3.312421 TGACTGCTTAGAACTGTGTTTGC 59.688 43.478 0.00 0.00 0.00 3.68
1710 4195 2.618709 ACTGCTTAGAACTGTGTTTGCC 59.381 45.455 0.00 0.00 0.00 4.52
1732 4217 3.055891 CCCCCAACTGATTTGTCATTTCC 60.056 47.826 0.00 0.00 32.71 3.13
1834 4319 2.292267 CTGGCGTCTTATGCTGGATTT 58.708 47.619 0.00 0.00 0.00 2.17
1846 4331 8.632679 TCTTATGCTGGATTTTATTCATTCACC 58.367 33.333 0.00 0.00 0.00 4.02
1903 4388 0.612732 TCCCTGCTGAATTGCCCTTG 60.613 55.000 0.00 0.00 0.00 3.61
2077 4562 4.865776 TGCAAAGGTATGAAAACCGAAAG 58.134 39.130 0.00 0.00 44.77 2.62
2627 5113 0.179084 CCTGTTACGACGGATGGCAT 60.179 55.000 0.00 0.00 33.82 4.40
2639 5125 2.224079 CGGATGGCATAGTCAAAATCGG 59.776 50.000 0.00 0.00 0.00 4.18
2640 5126 3.214328 GGATGGCATAGTCAAAATCGGT 58.786 45.455 0.00 0.00 0.00 4.69
2735 5221 1.815003 GCACCTAGTTGAAGCAAGCAT 59.185 47.619 0.00 0.00 0.00 3.79
2822 5312 5.626955 GCAGAATTAGTTTGTGTTCTCTTGC 59.373 40.000 0.00 0.00 31.37 4.01
2870 5360 2.359900 CAGTGACCTTAATCCTGCACC 58.640 52.381 0.00 0.00 0.00 5.01
2872 5362 2.026822 AGTGACCTTAATCCTGCACCTG 60.027 50.000 0.00 0.00 0.00 4.00
2880 5370 1.656587 ATCCTGCACCTGGAGTTGTA 58.343 50.000 0.00 0.00 35.07 2.41
2889 5383 1.278985 CCTGGAGTTGTAGGTGCATGA 59.721 52.381 0.00 0.00 0.00 3.07
2892 5386 3.346315 TGGAGTTGTAGGTGCATGAATG 58.654 45.455 0.00 0.00 0.00 2.67
2894 5388 2.094675 AGTTGTAGGTGCATGAATGGC 58.905 47.619 0.00 0.00 0.00 4.40
2913 5407 1.030488 CAGATGCTGGTTGGCTCCTG 61.030 60.000 0.00 2.32 0.00 3.86
2921 5415 2.503356 CTGGTTGGCTCCTGAACTAGAT 59.497 50.000 0.00 0.00 33.69 1.98
2932 5426 4.997395 TCCTGAACTAGATGTTTTCAGTGC 59.003 41.667 15.19 0.00 43.16 4.40
3018 5512 5.041951 GTTGTCACGAGCCATTTTATTGA 57.958 39.130 0.00 0.00 0.00 2.57
3032 5526 9.160496 GCCATTTTATTGAACACAATATTTCCA 57.840 29.630 0.00 0.00 36.69 3.53
3056 5550 9.372369 CCAGTAGACTTTTAAATACCTTCTCAG 57.628 37.037 0.00 0.00 0.00 3.35
3065 5559 4.744795 AATACCTTCTCAGTGCTGGTAG 57.255 45.455 0.00 0.00 36.81 3.18
3066 5560 2.016905 ACCTTCTCAGTGCTGGTAGT 57.983 50.000 0.00 0.00 0.00 2.73
3154 5648 2.037772 TGTTTTTGCAAGTGGGTGTTGT 59.962 40.909 0.00 0.00 0.00 3.32
3187 5681 2.370849 TGTCTTGTAAGGAGGAACCCAC 59.629 50.000 0.00 0.00 40.05 4.61
3216 5710 6.600822 CAGGGTTGATGATTGTTCTATGTTCT 59.399 38.462 0.00 0.00 0.00 3.01
3227 5721 4.700692 TGTTCTATGTTCTGCGAGTAGTCT 59.299 41.667 0.00 0.00 0.00 3.24
3290 5785 6.390721 TCCAACGAAAGCTAGATATATCTGC 58.609 40.000 23.03 21.57 37.76 4.26
3314 5809 7.437862 TGCAAATAAAAGCGTGATTTCTTCTTT 59.562 29.630 0.00 0.00 0.00 2.52
3336 5831 9.077885 TCTTTACAAAAAGGCATAGAACAGAAT 57.922 29.630 0.00 0.00 42.09 2.40
3443 5938 6.361481 CACAATGAAAGCAACACATTAGACAG 59.639 38.462 0.00 0.00 33.73 3.51
3488 5985 5.059833 AGGTTAAGAAAGACTTCACAGCAG 58.940 41.667 0.00 0.00 39.72 4.24
3560 6065 5.982890 AATTAACCCAGAAACACCATCTG 57.017 39.130 0.00 0.00 43.15 2.90
3565 6070 4.285863 ACCCAGAAACACCATCTGAAAAA 58.714 39.130 5.16 0.00 45.74 1.94
3608 6113 9.216117 GTCTTTGGCTTAAAGTATGTCTAGAAA 57.784 33.333 0.00 0.00 44.88 2.52
3609 6114 9.436957 TCTTTGGCTTAAAGTATGTCTAGAAAG 57.563 33.333 0.00 0.00 44.88 2.62
3610 6115 8.561738 TTTGGCTTAAAGTATGTCTAGAAAGG 57.438 34.615 0.00 0.00 0.00 3.11
3611 6116 7.253905 TGGCTTAAAGTATGTCTAGAAAGGT 57.746 36.000 0.00 0.00 0.00 3.50
3638 6143 0.797249 GCGATAGAACACACGAGCGT 60.797 55.000 0.00 0.00 39.76 5.07
3729 6234 4.497516 AGCTGGGGAGTATACAGATCATT 58.502 43.478 5.50 0.00 34.21 2.57
3824 6530 2.365582 GTACATGAACCATGGGTCCAC 58.634 52.381 27.12 15.02 45.16 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.633657 CTGGCACACACGCTCAAC 59.366 61.111 0.00 0.00 0.00 3.18
1 2 2.591429 CCTGGCACACACGCTCAA 60.591 61.111 0.00 0.00 0.00 3.02
2 3 3.519973 CTCCTGGCACACACGCTCA 62.520 63.158 0.00 0.00 0.00 4.26
3 4 2.740055 CTCCTGGCACACACGCTC 60.740 66.667 0.00 0.00 0.00 5.03
4 5 4.320456 CCTCCTGGCACACACGCT 62.320 66.667 0.00 0.00 0.00 5.07
14 15 4.224105 GAGGATAGGCCCTCCTGG 57.776 66.667 25.43 0.00 45.44 4.45
19 20 2.203509 CCGTCGAGGATAGGCCCT 60.204 66.667 6.70 0.00 45.00 5.19
20 21 1.683418 AAACCGTCGAGGATAGGCCC 61.683 60.000 6.70 0.00 45.00 5.80
21 22 0.177373 AAAACCGTCGAGGATAGGCC 59.823 55.000 6.70 0.00 45.00 5.19
22 23 1.664151 CAAAAACCGTCGAGGATAGGC 59.336 52.381 6.70 0.00 45.00 3.93
23 24 2.277084 CCAAAAACCGTCGAGGATAGG 58.723 52.381 6.70 0.00 45.00 2.57
24 25 2.277084 CCCAAAAACCGTCGAGGATAG 58.723 52.381 6.70 0.00 45.00 2.08
25 26 1.624813 ACCCAAAAACCGTCGAGGATA 59.375 47.619 6.70 0.00 45.00 2.59
26 27 0.399075 ACCCAAAAACCGTCGAGGAT 59.601 50.000 6.70 0.00 45.00 3.24
27 28 0.249996 GACCCAAAAACCGTCGAGGA 60.250 55.000 6.70 0.00 45.00 3.71
32 33 1.528161 CTACACGACCCAAAAACCGTC 59.472 52.381 0.00 0.00 32.50 4.79
33 34 1.585297 CTACACGACCCAAAAACCGT 58.415 50.000 0.00 0.00 35.46 4.83
34 35 0.869730 CCTACACGACCCAAAAACCG 59.130 55.000 0.00 0.00 0.00 4.44
35 36 2.259266 TCCTACACGACCCAAAAACC 57.741 50.000 0.00 0.00 0.00 3.27
36 37 2.551032 CCTTCCTACACGACCCAAAAAC 59.449 50.000 0.00 0.00 0.00 2.43
37 38 2.438763 TCCTTCCTACACGACCCAAAAA 59.561 45.455 0.00 0.00 0.00 1.94
38 39 2.048601 TCCTTCCTACACGACCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
39 40 1.345415 GTCCTTCCTACACGACCCAAA 59.655 52.381 0.00 0.00 0.00 3.28
40 41 0.971386 GTCCTTCCTACACGACCCAA 59.029 55.000 0.00 0.00 0.00 4.12
41 42 0.901580 GGTCCTTCCTACACGACCCA 60.902 60.000 0.00 0.00 39.13 4.51
42 43 1.895966 GGTCCTTCCTACACGACCC 59.104 63.158 0.00 0.00 39.13 4.46
43 44 1.611474 GGGGTCCTTCCTACACGACC 61.611 65.000 0.00 0.00 43.42 4.79
44 45 1.611474 GGGGGTCCTTCCTACACGAC 61.611 65.000 0.00 0.00 36.25 4.34
45 46 1.305549 GGGGGTCCTTCCTACACGA 60.306 63.158 0.00 0.00 36.25 4.35
46 47 3.306379 GGGGGTCCTTCCTACACG 58.694 66.667 0.00 0.00 36.25 4.49
60 61 2.042843 AGAGACTGCGGTAGGGGG 60.043 66.667 0.00 0.00 0.00 5.40
61 62 1.379977 TGAGAGACTGCGGTAGGGG 60.380 63.158 0.00 0.00 0.00 4.79
62 63 0.681564 AGTGAGAGACTGCGGTAGGG 60.682 60.000 0.00 0.00 31.75 3.53
63 64 1.944024 CTAGTGAGAGACTGCGGTAGG 59.056 57.143 0.00 0.00 35.96 3.18
64 65 1.944024 CCTAGTGAGAGACTGCGGTAG 59.056 57.143 0.00 0.00 35.96 3.18
65 66 2.017623 GCCTAGTGAGAGACTGCGGTA 61.018 57.143 0.00 0.00 35.96 4.02
66 67 1.316706 GCCTAGTGAGAGACTGCGGT 61.317 60.000 0.00 0.00 35.96 5.68
67 68 1.435515 GCCTAGTGAGAGACTGCGG 59.564 63.158 0.00 0.00 35.96 5.69
68 69 1.063327 CGCCTAGTGAGAGACTGCG 59.937 63.158 0.00 0.00 39.76 5.18
69 70 0.099791 GTCGCCTAGTGAGAGACTGC 59.900 60.000 0.00 0.00 35.96 4.40
70 71 0.375454 CGTCGCCTAGTGAGAGACTG 59.625 60.000 0.00 0.00 35.96 3.51
71 72 0.745128 CCGTCGCCTAGTGAGAGACT 60.745 60.000 0.00 0.00 38.88 3.24
72 73 1.025647 ACCGTCGCCTAGTGAGAGAC 61.026 60.000 0.00 0.00 0.00 3.36
73 74 0.322277 AACCGTCGCCTAGTGAGAGA 60.322 55.000 0.00 0.00 0.00 3.10
74 75 0.099082 GAACCGTCGCCTAGTGAGAG 59.901 60.000 0.00 0.00 0.00 3.20
75 76 0.607217 TGAACCGTCGCCTAGTGAGA 60.607 55.000 0.00 0.00 0.00 3.27
76 77 0.179161 CTGAACCGTCGCCTAGTGAG 60.179 60.000 0.00 0.00 0.00 3.51
77 78 0.607217 TCTGAACCGTCGCCTAGTGA 60.607 55.000 0.00 0.00 0.00 3.41
78 79 0.242825 TTCTGAACCGTCGCCTAGTG 59.757 55.000 0.00 0.00 0.00 2.74
79 80 0.243095 GTTCTGAACCGTCGCCTAGT 59.757 55.000 9.38 0.00 0.00 2.57
80 81 0.242825 TGTTCTGAACCGTCGCCTAG 59.757 55.000 17.26 0.00 0.00 3.02
81 82 0.038892 GTGTTCTGAACCGTCGCCTA 60.039 55.000 17.26 0.00 0.00 3.93
82 83 1.300697 GTGTTCTGAACCGTCGCCT 60.301 57.895 17.26 0.00 0.00 5.52
83 84 1.300697 AGTGTTCTGAACCGTCGCC 60.301 57.895 17.26 0.00 0.00 5.54
84 85 0.874607 ACAGTGTTCTGAACCGTCGC 60.875 55.000 17.26 0.00 43.76 5.19
85 86 1.129326 GACAGTGTTCTGAACCGTCG 58.871 55.000 17.26 6.47 43.76 5.12
86 87 1.129326 CGACAGTGTTCTGAACCGTC 58.871 55.000 17.26 17.58 43.76 4.79
87 88 0.874607 GCGACAGTGTTCTGAACCGT 60.875 55.000 17.26 11.65 43.76 4.83
88 89 1.853319 GCGACAGTGTTCTGAACCG 59.147 57.895 17.26 13.47 43.76 4.44
89 90 1.557443 CCGCGACAGTGTTCTGAACC 61.557 60.000 17.26 9.07 43.76 3.62
90 91 0.596600 TCCGCGACAGTGTTCTGAAC 60.597 55.000 8.23 13.49 43.76 3.18
91 92 0.103390 TTCCGCGACAGTGTTCTGAA 59.897 50.000 8.23 0.00 43.76 3.02
92 93 0.103390 TTTCCGCGACAGTGTTCTGA 59.897 50.000 8.23 0.00 43.76 3.27
93 94 0.508641 CTTTCCGCGACAGTGTTCTG 59.491 55.000 8.23 0.00 46.18 3.02
94 95 0.600255 CCTTTCCGCGACAGTGTTCT 60.600 55.000 8.23 0.00 0.00 3.01
95 96 1.566018 CCCTTTCCGCGACAGTGTTC 61.566 60.000 8.23 0.00 0.00 3.18
96 97 1.597027 CCCTTTCCGCGACAGTGTT 60.597 57.895 8.23 0.00 0.00 3.32
97 98 2.030562 CCCTTTCCGCGACAGTGT 59.969 61.111 8.23 0.00 0.00 3.55
98 99 2.742372 CCCCTTTCCGCGACAGTG 60.742 66.667 8.23 0.00 0.00 3.66
99 100 1.474332 TAACCCCTTTCCGCGACAGT 61.474 55.000 8.23 0.00 0.00 3.55
100 101 0.320946 TTAACCCCTTTCCGCGACAG 60.321 55.000 8.23 0.00 0.00 3.51
101 102 0.108207 TTTAACCCCTTTCCGCGACA 59.892 50.000 8.23 0.00 0.00 4.35
102 103 1.237533 TTTTAACCCCTTTCCGCGAC 58.762 50.000 8.23 0.00 0.00 5.19
103 104 1.608109 GTTTTTAACCCCTTTCCGCGA 59.392 47.619 8.23 0.00 0.00 5.87
104 105 1.336148 GGTTTTTAACCCCTTTCCGCG 60.336 52.381 0.00 0.00 46.12 6.46
105 106 2.443887 GGTTTTTAACCCCTTTCCGC 57.556 50.000 0.00 0.00 46.12 5.54
115 116 6.671190 AGGTGCTATACAAACGGTTTTTAAC 58.329 36.000 2.79 0.00 0.00 2.01
116 117 6.347563 CGAGGTGCTATACAAACGGTTTTTAA 60.348 38.462 2.79 0.00 0.00 1.52
117 118 5.120519 CGAGGTGCTATACAAACGGTTTTTA 59.879 40.000 2.79 2.51 0.00 1.52
118 119 4.083696 CGAGGTGCTATACAAACGGTTTTT 60.084 41.667 2.79 0.00 0.00 1.94
119 120 3.434299 CGAGGTGCTATACAAACGGTTTT 59.566 43.478 2.79 0.00 0.00 2.43
120 121 2.997986 CGAGGTGCTATACAAACGGTTT 59.002 45.455 0.00 0.00 0.00 3.27
121 122 2.231964 TCGAGGTGCTATACAAACGGTT 59.768 45.455 0.00 0.00 0.00 4.44
122 123 1.820519 TCGAGGTGCTATACAAACGGT 59.179 47.619 0.00 0.00 0.00 4.83
123 124 2.572191 TCGAGGTGCTATACAAACGG 57.428 50.000 0.00 0.00 0.00 4.44
124 125 3.444916 ACATCGAGGTGCTATACAAACG 58.555 45.455 0.00 0.00 0.00 3.60
125 126 4.743644 GGTACATCGAGGTGCTATACAAAC 59.256 45.833 17.47 2.05 0.00 2.93
126 127 4.403113 TGGTACATCGAGGTGCTATACAAA 59.597 41.667 17.47 0.00 0.00 2.83
127 128 3.955551 TGGTACATCGAGGTGCTATACAA 59.044 43.478 17.47 0.00 0.00 2.41
128 129 3.558033 TGGTACATCGAGGTGCTATACA 58.442 45.455 17.47 4.72 0.00 2.29
129 130 3.568853 ACTGGTACATCGAGGTGCTATAC 59.431 47.826 17.47 4.95 38.20 1.47
130 131 3.568430 CACTGGTACATCGAGGTGCTATA 59.432 47.826 17.47 4.61 38.20 1.31
131 132 2.362397 CACTGGTACATCGAGGTGCTAT 59.638 50.000 17.47 1.44 38.20 2.97
132 133 1.749063 CACTGGTACATCGAGGTGCTA 59.251 52.381 17.47 11.08 38.20 3.49
133 134 0.532573 CACTGGTACATCGAGGTGCT 59.467 55.000 17.47 0.00 38.20 4.40
134 135 0.530744 TCACTGGTACATCGAGGTGC 59.469 55.000 13.92 11.85 38.20 5.01
135 136 1.544246 TGTCACTGGTACATCGAGGTG 59.456 52.381 13.92 0.00 38.20 4.00
136 137 1.544691 GTGTCACTGGTACATCGAGGT 59.455 52.381 8.21 8.21 38.20 3.85
137 138 1.135083 GGTGTCACTGGTACATCGAGG 60.135 57.143 2.35 0.00 38.20 4.63
138 139 1.135083 GGGTGTCACTGGTACATCGAG 60.135 57.143 2.35 0.00 38.20 4.04
139 140 0.892755 GGGTGTCACTGGTACATCGA 59.107 55.000 2.35 0.00 38.20 3.59
140 141 0.108329 GGGGTGTCACTGGTACATCG 60.108 60.000 2.35 0.00 38.20 3.84
141 142 1.276622 AGGGGTGTCACTGGTACATC 58.723 55.000 2.35 0.00 38.20 3.06
142 143 2.634639 TAGGGGTGTCACTGGTACAT 57.365 50.000 2.35 0.00 38.20 2.29
143 144 2.634639 ATAGGGGTGTCACTGGTACA 57.365 50.000 2.35 0.00 0.00 2.90
144 145 4.281182 CAGATATAGGGGTGTCACTGGTAC 59.719 50.000 2.35 0.00 0.00 3.34
145 146 4.480115 CAGATATAGGGGTGTCACTGGTA 58.520 47.826 2.35 0.00 0.00 3.25
146 147 3.309296 CAGATATAGGGGTGTCACTGGT 58.691 50.000 2.35 0.00 0.00 4.00
147 148 2.037772 GCAGATATAGGGGTGTCACTGG 59.962 54.545 2.35 0.00 0.00 4.00
148 149 2.037772 GGCAGATATAGGGGTGTCACTG 59.962 54.545 2.35 0.00 0.00 3.66
149 150 2.330216 GGCAGATATAGGGGTGTCACT 58.670 52.381 2.35 0.00 0.00 3.41
150 151 2.047061 TGGCAGATATAGGGGTGTCAC 58.953 52.381 0.00 0.00 0.00 3.67
151 152 2.487746 TGGCAGATATAGGGGTGTCA 57.512 50.000 0.00 0.00 0.00 3.58
152 153 5.189736 TGAATATGGCAGATATAGGGGTGTC 59.810 44.000 0.00 0.00 0.00 3.67
153 154 5.100811 TGAATATGGCAGATATAGGGGTGT 58.899 41.667 0.00 0.00 0.00 4.16
154 155 5.698741 TGAATATGGCAGATATAGGGGTG 57.301 43.478 0.00 0.00 0.00 4.61
155 156 5.972502 TCATGAATATGGCAGATATAGGGGT 59.027 40.000 0.00 0.00 34.97 4.95
156 157 6.294473 GTCATGAATATGGCAGATATAGGGG 58.706 44.000 0.00 0.00 38.77 4.79
167 168 2.549754 CTCGGTTGGTCATGAATATGGC 59.450 50.000 0.00 0.00 38.20 4.40
177 178 3.319198 GGGGAGCTCGGTTGGTCA 61.319 66.667 7.83 0.00 36.30 4.02
189 190 0.178918 GAGTAGGGATGGGAGGGGAG 60.179 65.000 0.00 0.00 0.00 4.30
204 205 1.134037 ACAACTTTGTTGCCCGGAGTA 60.134 47.619 0.73 0.00 38.47 2.59
212 213 2.354821 ACTCCTTCGACAACTTTGTTGC 59.645 45.455 9.96 3.39 42.43 4.17
228 229 2.787035 CTCCCTAACTCCCTCTACTCCT 59.213 54.545 0.00 0.00 0.00 3.69
229 230 2.784682 TCTCCCTAACTCCCTCTACTCC 59.215 54.545 0.00 0.00 0.00 3.85
230 231 4.466827 CTTCTCCCTAACTCCCTCTACTC 58.533 52.174 0.00 0.00 0.00 2.59
243 244 2.781174 GAGAGTCTCCTCCTTCTCCCTA 59.219 54.545 9.15 0.00 38.58 3.53
270 271 3.673543 TTCTCTCTACTCCTCCCCTTC 57.326 52.381 0.00 0.00 0.00 3.46
294 295 0.043183 TGAGGGGGCTCTCATTCTCA 59.957 55.000 6.93 0.00 38.70 3.27
350 351 1.273606 CGACTGAGCAGAGGAAAAGGA 59.726 52.381 4.21 0.00 0.00 3.36
357 358 4.154347 GGGGCGACTGAGCAGAGG 62.154 72.222 4.21 0.00 39.27 3.69
394 395 3.084039 CAATACAAGGTGGCATGACTGT 58.916 45.455 0.00 0.00 0.00 3.55
424 425 8.353684 CGTGACTAGAGGAATGATAGTAATTGT 58.646 37.037 0.00 0.00 30.04 2.71
427 428 7.094549 GCTCGTGACTAGAGGAATGATAGTAAT 60.095 40.741 0.00 0.00 36.31 1.89
429 430 5.701750 GCTCGTGACTAGAGGAATGATAGTA 59.298 44.000 0.00 0.00 36.31 1.82
434 435 2.723273 TGCTCGTGACTAGAGGAATGA 58.277 47.619 0.00 0.00 36.31 2.57
460 461 6.489361 GGAGTTGGATATAACGTAGGAGAGAA 59.511 42.308 0.00 0.00 35.73 2.87
519 2841 3.119137 CCAGTCATGACACCGATCAAGTA 60.119 47.826 27.02 0.00 30.82 2.24
534 2856 3.691118 CGGTCATGAACAAATCCAGTCAT 59.309 43.478 12.13 0.00 0.00 3.06
535 2857 3.073678 CGGTCATGAACAAATCCAGTCA 58.926 45.455 12.13 0.00 0.00 3.41
536 2858 3.074412 ACGGTCATGAACAAATCCAGTC 58.926 45.455 12.13 0.00 0.00 3.51
557 2879 0.400213 AGGGACCACAATTGCGAAGA 59.600 50.000 5.05 0.00 0.00 2.87
560 2882 0.958091 CAAAGGGACCACAATTGCGA 59.042 50.000 5.05 0.00 0.00 5.10
562 2884 0.392336 TGCAAAGGGACCACAATTGC 59.608 50.000 5.05 12.97 44.93 3.56
571 2893 2.029380 GGTGGTTACAATGCAAAGGGAC 60.029 50.000 0.00 0.00 0.00 4.46
572 2894 2.158385 AGGTGGTTACAATGCAAAGGGA 60.158 45.455 0.00 0.00 0.00 4.20
591 2913 3.453353 TCGTAAACATTAAGGGGGAGAGG 59.547 47.826 0.00 0.00 0.00 3.69
593 2915 4.202182 CGATCGTAAACATTAAGGGGGAGA 60.202 45.833 7.03 0.00 0.00 3.71
596 2918 3.805971 GTCGATCGTAAACATTAAGGGGG 59.194 47.826 15.94 0.00 0.00 5.40
617 2939 5.189736 TGACTTGAAACCTATGAGCTATGGT 59.810 40.000 0.00 0.00 0.00 3.55
625 2947 3.745975 CGCAGTTGACTTGAAACCTATGA 59.254 43.478 0.00 0.00 0.00 2.15
643 2965 1.262950 TGTGACGGTTTCATTTCGCAG 59.737 47.619 0.00 0.00 36.32 5.18
651 2973 3.401033 AGATGACATGTGACGGTTTCA 57.599 42.857 1.15 0.00 0.00 2.69
657 2979 7.030165 GGGATACTATTAGATGACATGTGACG 58.970 42.308 1.15 0.00 0.00 4.35
679 3002 4.042809 TCTTGCATTAGTTTTCAGAGGGGA 59.957 41.667 0.00 0.00 0.00 4.81
697 3020 5.932883 GGCTAGGTAATATTACTGGTCTTGC 59.067 44.000 21.86 19.88 34.16 4.01
698 3021 6.015688 TCGGCTAGGTAATATTACTGGTCTTG 60.016 42.308 21.86 13.37 34.16 3.02
705 3028 6.618811 CGAATGTCGGCTAGGTAATATTACT 58.381 40.000 21.86 12.28 36.00 2.24
717 3040 0.952280 CTCCTAGCGAATGTCGGCTA 59.048 55.000 0.00 1.63 40.84 3.93
721 3044 0.312416 CCCTCTCCTAGCGAATGTCG 59.688 60.000 0.00 0.00 43.89 4.35
732 3055 3.334054 GCTTGCCACCCCTCTCCT 61.334 66.667 0.00 0.00 0.00 3.69
761 3084 8.973835 TTTTCTTCACAACTAAAATTGTCGTT 57.026 26.923 0.00 0.00 40.89 3.85
794 3117 7.562821 ACATTAGTTTATAGAGGGAGTACCGTT 59.437 37.037 0.00 0.00 46.96 4.44
801 3124 8.024285 CGCTCTTACATTAGTTTATAGAGGGAG 58.976 40.741 0.00 0.00 41.16 4.30
803 3126 7.659186 ACGCTCTTACATTAGTTTATAGAGGG 58.341 38.462 0.00 0.00 43.02 4.30
804 3127 9.530633 AAACGCTCTTACATTAGTTTATAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
811 3134 8.870879 GTGATCTAAACGCTCTTACATTAGTTT 58.129 33.333 0.00 0.00 36.11 2.66
812 3135 8.251721 AGTGATCTAAACGCTCTTACATTAGTT 58.748 33.333 0.00 0.00 0.00 2.24
813 3136 7.773149 AGTGATCTAAACGCTCTTACATTAGT 58.227 34.615 0.00 0.00 0.00 2.24
814 3137 9.731819 TTAGTGATCTAAACGCTCTTACATTAG 57.268 33.333 0.00 0.00 33.79 1.73
816 3139 8.997621 TTTAGTGATCTAAACGCTCTTACATT 57.002 30.769 0.00 0.00 40.05 2.71
817 3140 8.251721 ACTTTAGTGATCTAAACGCTCTTACAT 58.748 33.333 0.00 0.00 40.05 2.29
818 3141 7.600065 ACTTTAGTGATCTAAACGCTCTTACA 58.400 34.615 0.00 0.00 40.05 2.41
819 3142 9.224058 CTACTTTAGTGATCTAAACGCTCTTAC 57.776 37.037 0.00 0.00 40.05 2.34
820 3143 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
821 3144 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
822 3145 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
855 3178 9.793259 CTCCCTCCATAAACTAATATAAAAGCA 57.207 33.333 0.00 0.00 0.00 3.91
856 3179 9.794719 ACTCCCTCCATAAACTAATATAAAAGC 57.205 33.333 0.00 0.00 0.00 3.51
867 3190 9.293404 GTTTAAAAACTACTCCCTCCATAAACT 57.707 33.333 0.00 0.00 36.03 2.66
868 3191 9.070179 TGTTTAAAAACTACTCCCTCCATAAAC 57.930 33.333 7.09 0.00 39.59 2.01
869 3192 9.643735 TTGTTTAAAAACTACTCCCTCCATAAA 57.356 29.630 7.09 0.00 39.59 1.40
870 3193 9.643735 TTTGTTTAAAAACTACTCCCTCCATAA 57.356 29.630 7.09 0.00 39.59 1.90
871 3194 9.643735 TTTTGTTTAAAAACTACTCCCTCCATA 57.356 29.630 7.09 0.00 39.59 2.74
872 3195 8.541899 TTTTGTTTAAAAACTACTCCCTCCAT 57.458 30.769 7.09 0.00 39.59 3.41
873 3196 7.957992 TTTTGTTTAAAAACTACTCCCTCCA 57.042 32.000 7.09 0.00 39.59 3.86
874 3197 9.256477 CATTTTTGTTTAAAAACTACTCCCTCC 57.744 33.333 7.09 0.00 45.53 4.30
875 3198 8.761497 GCATTTTTGTTTAAAAACTACTCCCTC 58.239 33.333 7.09 0.00 45.53 4.30
876 3199 7.713507 GGCATTTTTGTTTAAAAACTACTCCCT 59.286 33.333 7.09 0.00 45.53 4.20
877 3200 7.713507 AGGCATTTTTGTTTAAAAACTACTCCC 59.286 33.333 7.09 0.56 45.53 4.30
878 3201 8.657074 AGGCATTTTTGTTTAAAAACTACTCC 57.343 30.769 7.09 0.81 45.53 3.85
880 3203 9.884636 AGAAGGCATTTTTGTTTAAAAACTACT 57.115 25.926 7.09 0.00 45.53 2.57
883 3206 8.882736 CAGAGAAGGCATTTTTGTTTAAAAACT 58.117 29.630 7.09 0.00 45.53 2.66
884 3207 8.878769 TCAGAGAAGGCATTTTTGTTTAAAAAC 58.121 29.630 0.00 0.00 45.53 2.43
889 3212 7.523293 TCATCAGAGAAGGCATTTTTGTTTA 57.477 32.000 0.00 0.00 0.00 2.01
892 3215 6.041296 AGTTTCATCAGAGAAGGCATTTTTGT 59.959 34.615 0.00 0.00 0.00 2.83
893 3216 6.365247 CAGTTTCATCAGAGAAGGCATTTTTG 59.635 38.462 0.00 0.00 0.00 2.44
906 3229 3.792401 ACAACGTGTCAGTTTCATCAGA 58.208 40.909 0.00 0.00 30.96 3.27
911 3234 3.075148 TCCAAACAACGTGTCAGTTTCA 58.925 40.909 0.00 0.00 33.54 2.69
934 3257 2.452600 TTGAGGGAGTGGCAGTTTTT 57.547 45.000 0.00 0.00 0.00 1.94
935 3258 2.430694 GTTTTGAGGGAGTGGCAGTTTT 59.569 45.455 0.00 0.00 0.00 2.43
978 3323 0.037303 AGCAAGGATGACACACTGGG 59.963 55.000 0.00 0.00 0.00 4.45
980 3325 2.005451 GCTAGCAAGGATGACACACTG 58.995 52.381 10.63 0.00 0.00 3.66
982 3327 1.002366 CGCTAGCAAGGATGACACAC 58.998 55.000 16.45 0.00 0.00 3.82
1001 3346 1.060698 GCTCATAACTGGCGAACGTTC 59.939 52.381 18.47 18.47 0.00 3.95
1181 3533 4.882396 GAGGAGGGAAGCGCTCGC 62.882 72.222 12.06 12.97 43.09 5.03
1182 3534 2.621371 GAAGAGGAGGGAAGCGCTCG 62.621 65.000 12.06 0.00 43.09 5.03
1288 3652 0.598680 CCAATCAGATCTCCGCCGTC 60.599 60.000 0.00 0.00 0.00 4.79
1343 3707 5.464168 CAGCAAACAATCAGGGAAAAGTAG 58.536 41.667 0.00 0.00 0.00 2.57
1488 3878 3.002656 ACGAACAATGCAAGTTCAGACTG 59.997 43.478 25.54 15.78 44.22 3.51
1490 3880 3.291585 CACGAACAATGCAAGTTCAGAC 58.708 45.455 25.54 8.28 44.22 3.51
1509 3899 3.226347 GCTTGACATGTTAAACGAGCAC 58.774 45.455 16.04 0.00 38.96 4.40
1511 3901 2.484264 AGGCTTGACATGTTAAACGAGC 59.516 45.455 13.62 13.62 38.56 5.03
1521 3912 1.935873 CGTCCACATAGGCTTGACATG 59.064 52.381 0.00 0.00 37.29 3.21
1545 3936 7.092716 AGCTAAATACAGAAGGCAAAAACATG 58.907 34.615 0.00 0.00 0.00 3.21
1621 4105 4.640201 TGCTTCTGCATACTACAAATTCCC 59.360 41.667 0.00 0.00 45.31 3.97
1710 4195 3.055891 GGAAATGACAAATCAGTTGGGGG 60.056 47.826 0.00 0.00 42.98 5.40
1732 4217 0.693049 AGCTTGACCCTGGTGTTAGG 59.307 55.000 0.00 0.00 37.59 2.69
1834 4319 3.992943 ACGAGGGTGGTGAATGAATAA 57.007 42.857 0.00 0.00 0.00 1.40
1846 4331 2.981859 AAGCATAGGTAACGAGGGTG 57.018 50.000 0.00 0.00 46.39 4.61
1903 4388 3.113260 AGACACTGCAGGTCTGTAAAC 57.887 47.619 27.00 9.89 43.65 2.01
2077 4562 3.758554 ACATGATTAACCACAAGTGCTCC 59.241 43.478 0.00 0.00 0.00 4.70
2120 4605 5.873179 TGTTACATTTACTGCTTACTGCC 57.127 39.130 0.00 0.00 42.00 4.85
2183 4668 2.474112 TCAGGTACCGCTTCCCTTAAT 58.526 47.619 6.18 0.00 0.00 1.40
2331 4817 9.601217 AGTATTAAGAAACTTACAGCATGGTAG 57.399 33.333 0.00 0.00 43.62 3.18
2627 5113 4.183865 CTCAGCATCACCGATTTTGACTA 58.816 43.478 0.00 0.00 0.00 2.59
2639 5125 0.594602 TTGCAACAGCTCAGCATCAC 59.405 50.000 0.00 0.00 38.19 3.06
2640 5126 1.541379 ATTGCAACAGCTCAGCATCA 58.459 45.000 0.00 0.00 38.19 3.07
2735 5221 5.634118 ACAAAAAGGATGAGAGATCACCAA 58.366 37.500 0.00 0.00 0.00 3.67
2739 5225 7.613022 AGCAATAACAAAAAGGATGAGAGATCA 59.387 33.333 0.00 0.00 0.00 2.92
2747 5233 7.894376 ACATTCAGCAATAACAAAAAGGATG 57.106 32.000 0.00 0.00 0.00 3.51
2822 5312 0.389817 TGGTGAAACGGCAGATCGAG 60.390 55.000 0.00 0.00 38.12 4.04
2870 5360 2.768253 TCATGCACCTACAACTCCAG 57.232 50.000 0.00 0.00 0.00 3.86
2872 5362 2.684881 CCATTCATGCACCTACAACTCC 59.315 50.000 0.00 0.00 0.00 3.85
2880 5370 1.399714 CATCTGCCATTCATGCACCT 58.600 50.000 0.00 0.00 34.46 4.00
2889 5383 1.610554 GCCAACCAGCATCTGCCATT 61.611 55.000 0.00 0.00 43.38 3.16
2892 5386 2.362120 AGCCAACCAGCATCTGCC 60.362 61.111 0.00 0.00 43.38 4.85
2894 5388 1.030488 CAGGAGCCAACCAGCATCTG 61.030 60.000 0.00 0.00 34.23 2.90
2913 5407 3.125316 CCGGCACTGAAAACATCTAGTTC 59.875 47.826 0.00 0.00 40.26 3.01
2921 5415 1.021202 CTGAACCGGCACTGAAAACA 58.979 50.000 0.00 0.00 0.00 2.83
2948 5442 0.244994 GCCTGAGCAGAAACTCTCGA 59.755 55.000 0.00 0.00 39.53 4.04
3003 5497 8.633075 AATATTGTGTTCAATAAAATGGCTCG 57.367 30.769 5.06 0.00 45.66 5.03
3032 5526 9.930693 CACTGAGAAGGTATTTAAAAGTCTACT 57.069 33.333 0.00 0.00 0.00 2.57
3056 5550 6.207810 AGCTCTACATAGATTACTACCAGCAC 59.792 42.308 0.00 0.00 0.00 4.40
3154 5648 1.034838 ACAAGACAAAGGTTGCCGCA 61.035 50.000 0.00 0.00 0.00 5.69
3187 5681 1.843368 ACAATCATCAACCCTGCCTG 58.157 50.000 0.00 0.00 0.00 4.85
3216 5710 2.779506 TCAGAGTTCAGACTACTCGCA 58.220 47.619 0.00 0.00 45.22 5.10
3227 5721 1.203237 AGGCTCCTCCTTCAGAGTTCA 60.203 52.381 0.00 0.00 44.75 3.18
3249 5743 4.083802 CGTTGGAAAACAAAGCAAAAACCA 60.084 37.500 0.00 0.00 41.58 3.67
3300 5795 6.695278 TGCCTTTTTGTAAAGAAGAAATCACG 59.305 34.615 0.00 0.00 42.78 4.35
3314 5809 8.177119 ACAATTCTGTTCTATGCCTTTTTGTA 57.823 30.769 0.00 0.00 28.57 2.41
3472 5969 3.623060 TGTGTTCTGCTGTGAAGTCTTTC 59.377 43.478 0.00 0.00 0.00 2.62
3488 5985 4.697352 ACCAAGCTGTTGATAGATGTGTTC 59.303 41.667 0.00 0.00 35.46 3.18
3565 6070 9.205513 AGCCAAAGACCAGATATGATTTTATTT 57.794 29.630 0.00 0.00 0.00 1.40
3566 6071 8.773033 AGCCAAAGACCAGATATGATTTTATT 57.227 30.769 0.00 0.00 0.00 1.40
3567 6072 8.773033 AAGCCAAAGACCAGATATGATTTTAT 57.227 30.769 0.00 0.00 0.00 1.40
3568 6073 9.693739 TTAAGCCAAAGACCAGATATGATTTTA 57.306 29.630 0.00 0.00 0.00 1.52
3608 6113 1.407258 GTTCTATCGCTGCTCTCACCT 59.593 52.381 0.00 0.00 0.00 4.00
3609 6114 1.135139 TGTTCTATCGCTGCTCTCACC 59.865 52.381 0.00 0.00 0.00 4.02
3610 6115 2.189342 GTGTTCTATCGCTGCTCTCAC 58.811 52.381 0.00 0.00 0.00 3.51
3611 6116 1.818674 TGTGTTCTATCGCTGCTCTCA 59.181 47.619 0.00 0.00 0.00 3.27
3638 6143 3.506455 GGTCTATATACCGAGAGCAAGCA 59.494 47.826 0.00 0.00 39.48 3.91
3729 6234 4.734402 GCCGTCAACGTATAATACTGTCCA 60.734 45.833 1.48 0.00 37.74 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.