Multiple sequence alignment - TraesCS2B01G496400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G496400 chr2B 100.000 3146 0 0 1 3146 693156004 693152859 0.000000e+00 5810.0
1 TraesCS2B01G496400 chr2B 90.824 534 49 0 785 1318 693181099 693180566 0.000000e+00 715.0
2 TraesCS2B01G496400 chr2B 78.531 177 30 6 1086 1255 692128566 692128741 3.320000e-20 110.0
3 TraesCS2B01G496400 chr2A 92.715 2361 120 30 191 2531 715211214 715208886 0.000000e+00 3360.0
4 TraesCS2B01G496400 chr2A 91.405 605 27 6 2551 3145 715206823 715206234 0.000000e+00 806.0
5 TraesCS2B01G496400 chr2A 95.431 197 8 1 1 197 746637501 746637696 2.360000e-81 313.0
6 TraesCS2B01G496400 chr2A 84.194 310 41 6 1094 1401 715249054 715248751 8.530000e-76 294.0
7 TraesCS2B01G496400 chr2A 82.114 123 8 9 647 767 13123562 13123672 3.340000e-15 93.5
8 TraesCS2B01G496400 chr3A 83.673 392 52 9 293 679 493097978 493097594 2.980000e-95 359.0
9 TraesCS2B01G496400 chr3A 95.408 196 8 1 1 196 438475447 438475641 8.470000e-81 311.0
10 TraesCS2B01G496400 chr6D 83.123 397 53 10 197 589 106047199 106047585 1.800000e-92 350.0
11 TraesCS2B01G496400 chr5B 87.153 288 31 4 293 579 129727675 129727393 3.910000e-84 322.0
12 TraesCS2B01G496400 chr5B 86.316 95 12 1 648 742 12580093 12580186 5.550000e-18 102.0
13 TraesCS2B01G496400 chr5D 83.673 343 44 8 250 589 439639686 439640019 2.360000e-81 313.0
14 TraesCS2B01G496400 chr1A 95.408 196 8 1 1 196 487510548 487510354 8.470000e-81 311.0
15 TraesCS2B01G496400 chr1A 94.924 197 9 1 1 197 534800936 534800741 1.100000e-79 307.0
16 TraesCS2B01G496400 chr1A 85.088 228 20 9 224 446 63745779 63745561 1.470000e-53 220.0
17 TraesCS2B01G496400 chr6A 94.924 197 10 0 1 197 887534 887338 3.050000e-80 309.0
18 TraesCS2B01G496400 chr6A 94.924 197 9 1 1 197 396593253 396593058 1.100000e-79 307.0
19 TraesCS2B01G496400 chr6A 93.596 203 11 2 1 203 535439847 535440047 5.100000e-78 302.0
20 TraesCS2B01G496400 chr4A 94.924 197 9 1 1 197 116835689 116835884 1.100000e-79 307.0
21 TraesCS2B01G496400 chr4A 94.924 197 9 1 1 197 214648368 214648563 1.100000e-79 307.0
22 TraesCS2B01G496400 chr4A 82.400 250 36 6 192 441 27192129 27191888 8.840000e-51 211.0
23 TraesCS2B01G496400 chr7B 81.127 355 54 9 239 589 740517577 740517922 4.000000e-69 272.0
24 TraesCS2B01G496400 chr7A 83.267 251 33 6 199 447 636699249 636699006 4.080000e-54 222.0
25 TraesCS2B01G496400 chr3B 80.634 284 43 5 479 750 822201870 822202153 3.180000e-50 209.0
26 TraesCS2B01G496400 chr2D 81.159 138 24 2 1119 1255 575831274 575831410 3.320000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G496400 chr2B 693152859 693156004 3145 True 5810 5810 100.000 1 3146 1 chr2B.!!$R1 3145
1 TraesCS2B01G496400 chr2B 693180566 693181099 533 True 715 715 90.824 785 1318 1 chr2B.!!$R2 533
2 TraesCS2B01G496400 chr2A 715206234 715211214 4980 True 2083 3360 92.060 191 3145 2 chr2A.!!$R2 2954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
858 875 0.03392 GTGGAAGGCAAAGGCAAAGG 59.966 55.0 0.0 0.0 43.71 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2814 4875 0.106708 TAGTTGGATCTGGCGATGGC 59.893 55.0 0.0 0.0 38.9 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.831742 TCCGTTCGGCGCTAGGAT 60.832 61.111 7.64 0.00 39.71 3.24
18 19 2.354773 CCGTTCGGCGCTAGGATC 60.355 66.667 7.64 1.16 39.71 3.36
19 20 2.411701 CGTTCGGCGCTAGGATCA 59.588 61.111 7.64 0.00 0.00 2.92
20 21 1.226859 CGTTCGGCGCTAGGATCAA 60.227 57.895 7.64 0.00 0.00 2.57
21 22 1.480219 CGTTCGGCGCTAGGATCAAC 61.480 60.000 7.64 0.00 0.00 3.18
22 23 1.226859 TTCGGCGCTAGGATCAACG 60.227 57.895 7.64 0.00 0.00 4.10
23 24 2.622903 TTCGGCGCTAGGATCAACGG 62.623 60.000 7.64 0.00 0.00 4.44
24 25 2.499685 GGCGCTAGGATCAACGGT 59.500 61.111 7.64 0.00 0.00 4.83
25 26 1.883084 GGCGCTAGGATCAACGGTG 60.883 63.158 7.64 0.00 0.00 4.94
26 27 1.141019 GCGCTAGGATCAACGGTGA 59.859 57.895 5.17 5.17 38.41 4.02
28 29 1.806623 GCGCTAGGATCAACGGTGATT 60.807 52.381 18.76 5.00 44.83 2.57
29 30 2.550978 CGCTAGGATCAACGGTGATTT 58.449 47.619 18.76 11.71 44.83 2.17
30 31 2.285220 CGCTAGGATCAACGGTGATTTG 59.715 50.000 18.76 9.18 44.83 2.32
31 32 2.614057 GCTAGGATCAACGGTGATTTGG 59.386 50.000 18.76 12.06 44.83 3.28
32 33 3.681594 GCTAGGATCAACGGTGATTTGGA 60.682 47.826 18.76 2.88 44.83 3.53
33 34 3.652057 AGGATCAACGGTGATTTGGAT 57.348 42.857 18.76 0.00 44.83 3.41
34 35 3.545703 AGGATCAACGGTGATTTGGATC 58.454 45.455 18.76 3.97 44.83 3.36
35 36 2.287915 GGATCAACGGTGATTTGGATCG 59.712 50.000 18.76 0.00 44.83 3.69
36 37 1.083489 TCAACGGTGATTTGGATCGC 58.917 50.000 0.00 0.00 41.13 4.58
37 38 0.247655 CAACGGTGATTTGGATCGCG 60.248 55.000 0.00 0.00 42.45 5.87
38 39 0.390603 AACGGTGATTTGGATCGCGA 60.391 50.000 13.09 13.09 42.45 5.87
39 40 1.082117 ACGGTGATTTGGATCGCGAC 61.082 55.000 12.93 5.43 42.45 5.19
40 41 1.636340 GGTGATTTGGATCGCGACG 59.364 57.895 12.93 0.00 42.45 5.12
41 42 0.804544 GGTGATTTGGATCGCGACGA 60.805 55.000 12.93 0.00 42.45 4.20
42 43 0.572590 GTGATTTGGATCGCGACGAG 59.427 55.000 12.93 0.00 39.91 4.18
43 44 0.172578 TGATTTGGATCGCGACGAGT 59.827 50.000 12.93 0.00 39.91 4.18
44 45 1.402613 TGATTTGGATCGCGACGAGTA 59.597 47.619 12.93 0.00 39.91 2.59
45 46 1.779724 GATTTGGATCGCGACGAGTAC 59.220 52.381 12.93 0.00 39.91 2.73
46 47 0.521867 TTTGGATCGCGACGAGTACG 60.522 55.000 12.93 0.00 39.91 3.67
47 48 1.360931 TTGGATCGCGACGAGTACGA 61.361 55.000 12.93 0.00 39.91 3.43
48 49 1.367429 GGATCGCGACGAGTACGAC 60.367 63.158 12.93 0.00 39.91 4.34
49 50 1.635281 GATCGCGACGAGTACGACT 59.365 57.895 12.93 0.00 39.91 4.18
50 51 0.381668 GATCGCGACGAGTACGACTC 60.382 60.000 12.93 0.00 39.91 3.36
51 52 1.760268 ATCGCGACGAGTACGACTCC 61.760 60.000 12.93 0.00 42.12 3.85
52 53 2.733671 CGCGACGAGTACGACTCCA 61.734 63.158 0.00 0.00 42.12 3.86
53 54 1.720301 GCGACGAGTACGACTCCAT 59.280 57.895 0.00 0.00 42.12 3.41
54 55 0.316032 GCGACGAGTACGACTCCATC 60.316 60.000 0.00 6.63 42.12 3.51
55 56 1.004595 CGACGAGTACGACTCCATCA 58.995 55.000 8.73 0.00 42.12 3.07
56 57 1.395954 CGACGAGTACGACTCCATCAA 59.604 52.381 8.73 0.00 42.12 2.57
57 58 2.783333 GACGAGTACGACTCCATCAAC 58.217 52.381 8.73 0.00 42.12 3.18
58 59 1.471684 ACGAGTACGACTCCATCAACC 59.528 52.381 8.73 0.00 42.12 3.77
59 60 1.202268 CGAGTACGACTCCATCAACCC 60.202 57.143 8.73 0.00 42.12 4.11
60 61 1.136500 GAGTACGACTCCATCAACCCC 59.864 57.143 0.00 0.00 39.28 4.95
61 62 0.179119 GTACGACTCCATCAACCCCG 60.179 60.000 0.00 0.00 0.00 5.73
62 63 0.612732 TACGACTCCATCAACCCCGT 60.613 55.000 0.00 0.00 0.00 5.28
63 64 1.295423 CGACTCCATCAACCCCGTT 59.705 57.895 0.00 0.00 0.00 4.44
64 65 0.739813 CGACTCCATCAACCCCGTTC 60.740 60.000 0.00 0.00 0.00 3.95
65 66 0.613777 GACTCCATCAACCCCGTTCT 59.386 55.000 0.00 0.00 0.00 3.01
66 67 0.613777 ACTCCATCAACCCCGTTCTC 59.386 55.000 0.00 0.00 0.00 2.87
67 68 0.905357 CTCCATCAACCCCGTTCTCT 59.095 55.000 0.00 0.00 0.00 3.10
68 69 1.279271 CTCCATCAACCCCGTTCTCTT 59.721 52.381 0.00 0.00 0.00 2.85
69 70 2.500098 CTCCATCAACCCCGTTCTCTTA 59.500 50.000 0.00 0.00 0.00 2.10
70 71 2.907696 TCCATCAACCCCGTTCTCTTAA 59.092 45.455 0.00 0.00 0.00 1.85
71 72 3.328343 TCCATCAACCCCGTTCTCTTAAA 59.672 43.478 0.00 0.00 0.00 1.52
72 73 3.439129 CCATCAACCCCGTTCTCTTAAAC 59.561 47.826 0.00 0.00 0.00 2.01
84 85 5.848786 GTTCTCTTAAACGATTCTGCTCAC 58.151 41.667 0.00 0.00 0.00 3.51
85 86 4.166523 TCTCTTAAACGATTCTGCTCACG 58.833 43.478 0.00 0.00 0.00 4.35
86 87 4.082949 TCTCTTAAACGATTCTGCTCACGA 60.083 41.667 0.00 0.00 0.00 4.35
87 88 4.744570 TCTTAAACGATTCTGCTCACGAT 58.255 39.130 0.00 0.00 0.00 3.73
88 89 4.798907 TCTTAAACGATTCTGCTCACGATC 59.201 41.667 0.00 0.00 0.00 3.69
89 90 2.949451 AACGATTCTGCTCACGATCT 57.051 45.000 0.00 0.00 0.00 2.75
90 91 4.371855 AAACGATTCTGCTCACGATCTA 57.628 40.909 0.00 0.00 0.00 1.98
91 92 3.341857 ACGATTCTGCTCACGATCTAC 57.658 47.619 0.00 0.00 0.00 2.59
92 93 2.683362 ACGATTCTGCTCACGATCTACA 59.317 45.455 0.00 0.00 0.00 2.74
93 94 3.128764 ACGATTCTGCTCACGATCTACAA 59.871 43.478 0.00 0.00 0.00 2.41
94 95 3.728221 CGATTCTGCTCACGATCTACAAG 59.272 47.826 0.00 0.00 0.00 3.16
95 96 3.510388 TTCTGCTCACGATCTACAAGG 57.490 47.619 0.00 0.00 0.00 3.61
96 97 1.751351 TCTGCTCACGATCTACAAGGG 59.249 52.381 0.00 0.00 0.00 3.95
97 98 1.478510 CTGCTCACGATCTACAAGGGT 59.521 52.381 0.00 0.00 0.00 4.34
98 99 2.688446 CTGCTCACGATCTACAAGGGTA 59.312 50.000 0.00 0.00 0.00 3.69
99 100 3.296854 TGCTCACGATCTACAAGGGTAT 58.703 45.455 0.00 0.00 0.00 2.73
100 101 3.068165 TGCTCACGATCTACAAGGGTATG 59.932 47.826 0.00 0.00 0.00 2.39
101 102 3.068307 GCTCACGATCTACAAGGGTATGT 59.932 47.826 0.00 0.00 37.32 2.29
102 103 4.277672 GCTCACGATCTACAAGGGTATGTA 59.722 45.833 0.00 0.00 34.75 2.29
111 112 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
112 113 3.134804 ACAAGGGTATGTAGATGCACTCC 59.865 47.826 0.00 0.00 25.83 3.85
113 114 2.330216 AGGGTATGTAGATGCACTCCC 58.670 52.381 0.00 0.00 35.94 4.30
114 115 1.348036 GGGTATGTAGATGCACTCCCC 59.652 57.143 0.00 0.00 32.31 4.81
115 116 2.330216 GGTATGTAGATGCACTCCCCT 58.670 52.381 0.00 0.00 0.00 4.79
116 117 2.300437 GGTATGTAGATGCACTCCCCTC 59.700 54.545 0.00 0.00 0.00 4.30
117 118 2.485966 ATGTAGATGCACTCCCCTCT 57.514 50.000 0.00 0.00 0.00 3.69
118 119 1.781786 TGTAGATGCACTCCCCTCTC 58.218 55.000 0.00 0.00 0.00 3.20
119 120 1.044611 GTAGATGCACTCCCCTCTCC 58.955 60.000 0.00 0.00 0.00 3.71
120 121 0.468214 TAGATGCACTCCCCTCTCCG 60.468 60.000 0.00 0.00 0.00 4.63
121 122 2.039624 ATGCACTCCCCTCTCCGT 59.960 61.111 0.00 0.00 0.00 4.69
122 123 2.022240 GATGCACTCCCCTCTCCGTC 62.022 65.000 0.00 0.00 0.00 4.79
123 124 3.827898 GCACTCCCCTCTCCGTCG 61.828 72.222 0.00 0.00 0.00 5.12
124 125 2.361357 CACTCCCCTCTCCGTCGT 60.361 66.667 0.00 0.00 0.00 4.34
125 126 1.977544 CACTCCCCTCTCCGTCGTT 60.978 63.158 0.00 0.00 0.00 3.85
126 127 1.977544 ACTCCCCTCTCCGTCGTTG 60.978 63.158 0.00 0.00 0.00 4.10
127 128 3.358076 CTCCCCTCTCCGTCGTTGC 62.358 68.421 0.00 0.00 0.00 4.17
128 129 3.382832 CCCCTCTCCGTCGTTGCT 61.383 66.667 0.00 0.00 0.00 3.91
129 130 2.050350 CCCCTCTCCGTCGTTGCTA 61.050 63.158 0.00 0.00 0.00 3.49
130 131 1.433879 CCCTCTCCGTCGTTGCTAG 59.566 63.158 0.00 0.00 0.00 3.42
131 132 1.030488 CCCTCTCCGTCGTTGCTAGA 61.030 60.000 0.00 0.00 0.00 2.43
132 133 1.025812 CCTCTCCGTCGTTGCTAGAT 58.974 55.000 0.00 0.00 0.00 1.98
133 134 1.268794 CCTCTCCGTCGTTGCTAGATG 60.269 57.143 0.00 0.00 0.00 2.90
134 135 1.671328 CTCTCCGTCGTTGCTAGATGA 59.329 52.381 0.00 0.00 0.00 2.92
135 136 1.400846 TCTCCGTCGTTGCTAGATGAC 59.599 52.381 0.00 0.00 33.25 3.06
136 137 1.402259 CTCCGTCGTTGCTAGATGACT 59.598 52.381 0.00 0.00 34.20 3.41
137 138 1.400846 TCCGTCGTTGCTAGATGACTC 59.599 52.381 0.00 0.00 34.20 3.36
138 139 1.534175 CCGTCGTTGCTAGATGACTCC 60.534 57.143 0.00 0.00 34.20 3.85
139 140 1.132453 CGTCGTTGCTAGATGACTCCA 59.868 52.381 0.00 0.00 34.20 3.86
140 141 2.223595 CGTCGTTGCTAGATGACTCCAT 60.224 50.000 0.00 0.00 34.20 3.41
141 142 3.003378 CGTCGTTGCTAGATGACTCCATA 59.997 47.826 0.00 0.00 34.20 2.74
142 143 4.541779 GTCGTTGCTAGATGACTCCATAG 58.458 47.826 0.00 0.00 33.70 2.23
143 144 4.276183 GTCGTTGCTAGATGACTCCATAGA 59.724 45.833 0.00 0.00 33.70 1.98
144 145 5.048364 GTCGTTGCTAGATGACTCCATAGAT 60.048 44.000 0.00 0.00 33.70 1.98
145 146 5.536538 TCGTTGCTAGATGACTCCATAGATT 59.463 40.000 0.00 0.00 32.09 2.40
146 147 5.632764 CGTTGCTAGATGACTCCATAGATTG 59.367 44.000 0.00 0.00 32.09 2.67
147 148 6.515696 CGTTGCTAGATGACTCCATAGATTGA 60.516 42.308 0.00 0.00 32.09 2.57
148 149 7.385267 GTTGCTAGATGACTCCATAGATTGAT 58.615 38.462 0.00 0.00 32.09 2.57
149 150 7.167924 TGCTAGATGACTCCATAGATTGATC 57.832 40.000 0.00 0.00 32.09 2.92
150 151 6.952938 TGCTAGATGACTCCATAGATTGATCT 59.047 38.462 0.00 0.00 40.86 2.75
151 152 7.454066 TGCTAGATGACTCCATAGATTGATCTT 59.546 37.037 0.00 0.00 38.32 2.40
152 153 7.760794 GCTAGATGACTCCATAGATTGATCTTG 59.239 40.741 0.00 0.00 38.32 3.02
153 154 7.006865 AGATGACTCCATAGATTGATCTTGG 57.993 40.000 0.00 7.19 38.32 3.61
154 155 6.558014 AGATGACTCCATAGATTGATCTTGGT 59.442 38.462 15.48 4.75 38.32 3.67
155 156 5.922053 TGACTCCATAGATTGATCTTGGTG 58.078 41.667 15.48 15.28 38.32 4.17
156 157 5.662657 TGACTCCATAGATTGATCTTGGTGA 59.337 40.000 19.38 6.63 38.32 4.02
157 158 6.328410 TGACTCCATAGATTGATCTTGGTGAT 59.672 38.462 19.38 10.95 38.32 3.06
158 159 6.531923 ACTCCATAGATTGATCTTGGTGATG 58.468 40.000 19.38 10.22 38.32 3.07
159 160 5.311265 TCCATAGATTGATCTTGGTGATGC 58.689 41.667 15.48 0.00 38.32 3.91
160 161 5.072736 TCCATAGATTGATCTTGGTGATGCT 59.927 40.000 15.48 0.00 38.32 3.79
161 162 5.768662 CCATAGATTGATCTTGGTGATGCTT 59.231 40.000 0.00 0.00 38.32 3.91
162 163 6.938596 CCATAGATTGATCTTGGTGATGCTTA 59.061 38.462 0.00 0.00 38.32 3.09
163 164 7.119407 CCATAGATTGATCTTGGTGATGCTTAG 59.881 40.741 0.00 0.00 38.32 2.18
164 165 6.244552 AGATTGATCTTGGTGATGCTTAGA 57.755 37.500 0.00 0.00 35.14 2.10
165 166 6.656902 AGATTGATCTTGGTGATGCTTAGAA 58.343 36.000 0.00 0.00 35.14 2.10
166 167 7.114754 AGATTGATCTTGGTGATGCTTAGAAA 58.885 34.615 0.00 0.00 35.14 2.52
167 168 7.613022 AGATTGATCTTGGTGATGCTTAGAAAA 59.387 33.333 0.00 0.00 35.14 2.29
168 169 7.707624 TTGATCTTGGTGATGCTTAGAAAAT 57.292 32.000 0.00 0.00 35.14 1.82
169 170 7.707624 TGATCTTGGTGATGCTTAGAAAATT 57.292 32.000 0.00 0.00 35.14 1.82
170 171 8.125978 TGATCTTGGTGATGCTTAGAAAATTT 57.874 30.769 0.00 0.00 35.14 1.82
171 172 8.587608 TGATCTTGGTGATGCTTAGAAAATTTT 58.412 29.630 2.28 2.28 35.14 1.82
191 192 9.448438 AAATTTTAAAATTCTGCTACATTCCCC 57.552 29.630 22.96 0.00 37.62 4.81
192 193 7.546250 TTTTAAAATTCTGCTACATTCCCCA 57.454 32.000 0.00 0.00 0.00 4.96
193 194 7.546250 TTTAAAATTCTGCTACATTCCCCAA 57.454 32.000 0.00 0.00 0.00 4.12
194 195 5.405935 AAAATTCTGCTACATTCCCCAAC 57.594 39.130 0.00 0.00 0.00 3.77
195 196 3.737559 ATTCTGCTACATTCCCCAACA 57.262 42.857 0.00 0.00 0.00 3.33
203 204 0.604578 CATTCCCCAACAGGTTGCAG 59.395 55.000 6.64 0.69 39.16 4.41
206 207 2.730094 CCCAACAGGTTGCAGCAC 59.270 61.111 2.05 0.00 39.16 4.40
209 210 0.038892 CCAACAGGTTGCAGCACATC 60.039 55.000 2.05 0.00 39.16 3.06
210 211 0.956633 CAACAGGTTGCAGCACATCT 59.043 50.000 2.05 0.00 33.45 2.90
220 221 2.506217 GCACATCTTCGTCGCCGA 60.506 61.111 0.00 0.00 42.41 5.54
233 234 4.415332 GCCGAAGTCGCGAGGTCA 62.415 66.667 10.24 0.00 38.18 4.02
257 258 1.414181 CTCCGCCTTGATGGATGTAGT 59.586 52.381 0.00 0.00 38.35 2.73
283 284 3.454371 AACTTCGCCGATAGTAGCAAT 57.546 42.857 0.00 0.00 0.00 3.56
289 290 3.508402 TCGCCGATAGTAGCAATATCCAA 59.492 43.478 0.00 0.00 0.00 3.53
310 311 3.500343 ACTATGGTTGCAGCTTTTCCTT 58.500 40.909 0.00 0.00 0.00 3.36
315 316 2.204237 GTTGCAGCTTTTCCTTGTTGG 58.796 47.619 0.00 0.00 37.10 3.77
319 320 1.138661 CAGCTTTTCCTTGTTGGGCAA 59.861 47.619 0.00 0.00 36.20 4.52
321 322 3.006752 CAGCTTTTCCTTGTTGGGCAATA 59.993 43.478 0.00 0.00 36.36 1.90
322 323 3.645687 AGCTTTTCCTTGTTGGGCAATAA 59.354 39.130 0.00 0.00 36.36 1.40
323 324 4.286808 AGCTTTTCCTTGTTGGGCAATAAT 59.713 37.500 0.00 0.00 36.36 1.28
324 325 4.392754 GCTTTTCCTTGTTGGGCAATAATG 59.607 41.667 0.00 0.00 36.36 1.90
341 342 1.168714 ATGCCGGTTGAAGCTTTCTC 58.831 50.000 1.90 0.00 0.00 2.87
362 363 9.520515 TTTCTCTATCTATGGTTGAAGCTTTTT 57.479 29.630 0.00 0.00 0.00 1.94
388 389 6.260050 TCAACAACTACTGAAGCTGTTTTAGG 59.740 38.462 0.00 0.00 40.77 2.69
392 393 6.115448 ACTACTGAAGCTGTTTTAGGTGAT 57.885 37.500 0.00 0.00 37.17 3.06
393 394 5.934625 ACTACTGAAGCTGTTTTAGGTGATG 59.065 40.000 0.00 0.00 37.17 3.07
397 398 5.626142 TGAAGCTGTTTTAGGTGATGGTTA 58.374 37.500 0.00 0.00 37.17 2.85
411 412 6.877322 AGGTGATGGTTACAACACTTGTATAC 59.123 38.462 7.81 0.00 46.17 1.47
412 413 6.651643 GGTGATGGTTACAACACTTGTATACA 59.348 38.462 0.08 0.08 46.17 2.29
413 414 7.335924 GGTGATGGTTACAACACTTGTATACAT 59.664 37.037 6.36 9.83 46.17 2.29
449 450 3.755434 GCAGGCAGCCATGGTATC 58.245 61.111 15.80 2.11 37.23 2.24
465 466 2.420687 GGTATCTCCTTGCTGGTTCCAG 60.421 54.545 13.88 13.88 37.07 3.86
474 475 3.181526 CTGGTTCCAGCATTCTCCC 57.818 57.895 5.89 0.00 0.00 4.30
475 476 0.329261 CTGGTTCCAGCATTCTCCCA 59.671 55.000 5.89 0.00 0.00 4.37
476 477 0.776810 TGGTTCCAGCATTCTCCCAA 59.223 50.000 0.00 0.00 0.00 4.12
477 478 1.177401 GGTTCCAGCATTCTCCCAAC 58.823 55.000 0.00 0.00 0.00 3.77
478 479 1.547675 GGTTCCAGCATTCTCCCAACA 60.548 52.381 0.00 0.00 0.00 3.33
479 480 1.541588 GTTCCAGCATTCTCCCAACAC 59.458 52.381 0.00 0.00 0.00 3.32
480 481 0.321564 TCCAGCATTCTCCCAACACG 60.322 55.000 0.00 0.00 0.00 4.49
483 484 1.608590 CAGCATTCTCCCAACACGTTT 59.391 47.619 0.00 0.00 0.00 3.60
484 485 1.608590 AGCATTCTCCCAACACGTTTG 59.391 47.619 0.00 0.00 0.00 2.93
485 486 1.930371 GCATTCTCCCAACACGTTTGC 60.930 52.381 0.00 0.00 0.00 3.68
486 487 1.608590 CATTCTCCCAACACGTTTGCT 59.391 47.619 0.00 0.00 0.00 3.91
492 493 2.593436 AACACGTTTGCTCCCCCG 60.593 61.111 0.00 0.00 0.00 5.73
546 547 4.424566 CCGCCATGGTTGCAGCAC 62.425 66.667 14.67 0.00 0.00 4.40
565 566 4.028490 TGGTCACCGCCATGGGAC 62.028 66.667 15.13 11.92 44.64 4.46
622 623 4.785453 GCAGCACGGGGGAAGGAG 62.785 72.222 0.00 0.00 0.00 3.69
626 627 2.366972 CACGGGGGAAGGAGGGAT 60.367 66.667 0.00 0.00 0.00 3.85
627 628 2.366972 ACGGGGGAAGGAGGGATG 60.367 66.667 0.00 0.00 0.00 3.51
628 629 3.878667 CGGGGGAAGGAGGGATGC 61.879 72.222 0.00 0.00 0.00 3.91
629 630 2.696125 GGGGGAAGGAGGGATGCA 60.696 66.667 0.00 0.00 0.00 3.96
630 631 2.761465 GGGGGAAGGAGGGATGCAG 61.761 68.421 0.00 0.00 0.00 4.41
631 632 2.194326 GGGAAGGAGGGATGCAGC 59.806 66.667 0.00 0.00 0.00 5.25
670 675 3.942439 GGTAGGGGATGGAGGCGC 61.942 72.222 0.00 0.00 0.00 6.53
679 684 2.701163 GATGGAGGCGCGTAGGGAAG 62.701 65.000 8.43 0.00 46.37 3.46
707 713 2.189521 CGCGGGGCCACTTTCTAT 59.810 61.111 1.96 0.00 0.00 1.98
711 717 1.823899 GGGGCCACTTTCTATGCCG 60.824 63.158 4.39 0.00 44.96 5.69
715 721 1.095807 GCCACTTTCTATGCCGGTCC 61.096 60.000 1.90 0.00 0.00 4.46
716 722 0.810031 CCACTTTCTATGCCGGTCCG 60.810 60.000 3.60 3.60 0.00 4.79
755 761 3.793144 GTGCGAGCCGGCTGAAAG 61.793 66.667 38.41 22.54 0.00 2.62
757 763 3.050275 GCGAGCCGGCTGAAAGTT 61.050 61.111 38.41 8.09 35.30 2.66
758 764 2.617274 GCGAGCCGGCTGAAAGTTT 61.617 57.895 38.41 7.08 35.30 2.66
759 765 1.207593 CGAGCCGGCTGAAAGTTTG 59.792 57.895 38.41 8.29 35.30 2.93
761 767 2.049156 GCCGGCTGAAAGTTTGGC 60.049 61.111 22.15 0.00 39.59 4.52
762 768 2.650778 CCGGCTGAAAGTTTGGCC 59.349 61.111 15.43 15.43 41.02 5.36
765 771 2.049156 GCTGAAAGTTTGGCCGGC 60.049 61.111 21.18 21.18 35.30 6.13
769 775 4.279043 AAAGTTTGGCCGGCGTGC 62.279 61.111 22.54 7.39 0.00 5.34
813 830 2.816087 TCGTGCTAAACTAGAACTCCGT 59.184 45.455 0.00 0.00 31.81 4.69
858 875 0.033920 GTGGAAGGCAAAGGCAAAGG 59.966 55.000 0.00 0.00 43.71 3.11
1020 1037 4.681978 AGCAGGAACACCCGCGTC 62.682 66.667 4.92 0.00 40.87 5.19
1148 1165 3.660865 GATTTCGTGGTGACCAACTACT 58.339 45.455 5.57 0.00 38.09 2.57
1297 1314 3.380004 CCTACTTGTGTTGTCTTTGCCAA 59.620 43.478 0.00 0.00 0.00 4.52
1615 1632 4.787999 GACGTCACCATCCTCGTC 57.212 61.111 11.55 0.00 43.81 4.20
1618 1635 2.202756 GTCACCATCCTCGTCGGC 60.203 66.667 0.00 0.00 0.00 5.54
1711 1728 3.471244 GACGATGGAGGTCGCCGAG 62.471 68.421 0.00 0.00 45.12 4.63
1932 1949 1.337260 GGCACTGGCGGATCAGTATAG 60.337 57.143 0.00 0.00 45.24 1.31
1967 1984 0.178068 GGATGCCTGCCTCGAGTTTA 59.822 55.000 12.31 0.00 0.00 2.01
1976 1993 1.918609 GCCTCGAGTTTATGTCGTCAC 59.081 52.381 12.31 0.00 38.60 3.67
2026 2043 2.224079 CGACAGGTTCAAACACCTCATG 59.776 50.000 0.00 0.00 44.63 3.07
2050 2067 6.042552 TGAAAAGTTTCCCCATGCTTGATTTA 59.957 34.615 0.22 0.00 36.36 1.40
2068 2085 1.486211 TAGAAAAGAGCCCCGAGGAG 58.514 55.000 0.00 0.00 33.47 3.69
2069 2086 0.252284 AGAAAAGAGCCCCGAGGAGA 60.252 55.000 0.00 0.00 33.47 3.71
2070 2087 0.613777 GAAAAGAGCCCCGAGGAGAA 59.386 55.000 0.00 0.00 33.47 2.87
2071 2088 0.615850 AAAAGAGCCCCGAGGAGAAG 59.384 55.000 0.00 0.00 33.47 2.85
2072 2089 1.268283 AAAGAGCCCCGAGGAGAAGG 61.268 60.000 0.00 0.00 33.47 3.46
2073 2090 2.364448 GAGCCCCGAGGAGAAGGT 60.364 66.667 0.00 0.00 33.47 3.50
2074 2091 1.076192 GAGCCCCGAGGAGAAGGTA 60.076 63.158 0.00 0.00 33.47 3.08
2075 2092 1.381463 AGCCCCGAGGAGAAGGTAC 60.381 63.158 0.00 0.00 33.47 3.34
2076 2093 2.433146 GCCCCGAGGAGAAGGTACC 61.433 68.421 2.73 2.73 33.47 3.34
2077 2094 1.761271 CCCCGAGGAGAAGGTACCC 60.761 68.421 8.74 0.00 33.47 3.69
2078 2095 2.125961 CCCGAGGAGAAGGTACCCG 61.126 68.421 8.74 2.64 0.00 5.28
2108 2125 6.655003 CAGGAAGTAATCAAAGCCAGAAGTAA 59.345 38.462 0.00 0.00 0.00 2.24
2188 2206 5.252586 TGGTTGACAGGTAGAGTACTAGT 57.747 43.478 0.00 0.00 0.00 2.57
2189 2207 5.008331 TGGTTGACAGGTAGAGTACTAGTG 58.992 45.833 5.39 0.00 0.00 2.74
2190 2208 5.008980 GGTTGACAGGTAGAGTACTAGTGT 58.991 45.833 5.39 0.00 32.77 3.55
2191 2209 6.176183 GGTTGACAGGTAGAGTACTAGTGTA 58.824 44.000 5.39 0.00 31.26 2.90
2192 2210 6.315891 GGTTGACAGGTAGAGTACTAGTGTAG 59.684 46.154 5.39 0.00 31.26 2.74
2282 2300 9.452065 GTCCTAAGAAAATGAAGAAAGTTGAAC 57.548 33.333 0.00 0.00 0.00 3.18
2338 2356 8.788813 CAAACAGAACAAATGATTTACGATAGC 58.211 33.333 0.00 0.00 42.67 2.97
2500 2518 5.408604 CCTTGGTACAGTTCTTGTCACATAC 59.591 44.000 0.00 0.00 42.39 2.39
2508 2526 6.425114 ACAGTTCTTGTCACATACTTGCTTAG 59.575 38.462 0.00 0.00 33.87 2.18
2519 2537 9.502091 TCACATACTTGCTTAGATTTTACTGTT 57.498 29.630 0.00 0.00 0.00 3.16
2548 2566 6.827586 AATTTATAGTCAAACTTTCGCCCA 57.172 33.333 0.00 0.00 0.00 5.36
2549 2567 6.827586 ATTTATAGTCAAACTTTCGCCCAA 57.172 33.333 0.00 0.00 0.00 4.12
2550 2568 6.636562 TTTATAGTCAAACTTTCGCCCAAA 57.363 33.333 0.00 0.00 0.00 3.28
2551 2569 6.636562 TTATAGTCAAACTTTCGCCCAAAA 57.363 33.333 0.00 0.00 0.00 2.44
2552 2570 3.159353 AGTCAAACTTTCGCCCAAAAC 57.841 42.857 0.00 0.00 0.00 2.43
2553 2571 2.494073 AGTCAAACTTTCGCCCAAAACA 59.506 40.909 0.00 0.00 0.00 2.83
2554 2572 3.056465 AGTCAAACTTTCGCCCAAAACAA 60.056 39.130 0.00 0.00 0.00 2.83
2555 2573 3.305897 GTCAAACTTTCGCCCAAAACAAG 59.694 43.478 0.00 0.00 0.00 3.16
2556 2574 3.193691 TCAAACTTTCGCCCAAAACAAGA 59.806 39.130 0.00 0.00 0.00 3.02
2557 2575 3.436700 AACTTTCGCCCAAAACAAGAG 57.563 42.857 0.00 0.00 0.00 2.85
2568 4628 4.325030 CCCAAAACAAGAGAGGGCCTATTA 60.325 45.833 5.73 0.00 31.81 0.98
2597 4657 6.578163 AGCGAAGGGAGTAGAATATAACTC 57.422 41.667 0.00 4.84 41.16 3.01
2606 4666 6.086785 AGTAGAATATAACTCCAACCGAGC 57.913 41.667 0.00 0.00 43.01 5.03
2607 4667 3.978687 AGAATATAACTCCAACCGAGCG 58.021 45.455 0.00 0.00 43.01 5.03
2653 4713 7.941795 AATAATTTGCAGATTGAAGCTATGC 57.058 32.000 12.50 0.00 37.40 3.14
2687 4747 4.568152 AAAACAAACTCCAACCTGATCG 57.432 40.909 0.00 0.00 0.00 3.69
2723 4783 1.156736 GCTACAACAGCGACCATGTT 58.843 50.000 0.00 0.00 41.37 2.71
2741 4801 5.882000 CCATGTTCACACCAATGATCTCTTA 59.118 40.000 0.00 0.00 0.00 2.10
2742 4802 6.183360 CCATGTTCACACCAATGATCTCTTAC 60.183 42.308 0.00 0.00 0.00 2.34
2765 4826 6.153067 ACATGAAAAGTACAACGAGAGAGAG 58.847 40.000 0.00 0.00 0.00 3.20
2766 4827 6.016192 ACATGAAAAGTACAACGAGAGAGAGA 60.016 38.462 0.00 0.00 0.00 3.10
2767 4828 6.576662 TGAAAAGTACAACGAGAGAGAGAT 57.423 37.500 0.00 0.00 0.00 2.75
2768 4829 7.683437 TGAAAAGTACAACGAGAGAGAGATA 57.317 36.000 0.00 0.00 0.00 1.98
2796 4857 6.899613 GTTCAACAACAACACCTTAGAAAGGG 60.900 42.308 10.33 2.40 41.61 3.95
2814 4875 1.398390 GGGAAATACGCTCAAGTGCTG 59.602 52.381 0.00 0.00 0.00 4.41
2826 4887 2.515523 GTGCTGCCATCGCCAGAT 60.516 61.111 0.00 0.00 37.65 2.90
2832 4893 1.153086 GCCATCGCCAGATCCAACT 60.153 57.895 0.00 0.00 34.23 3.16
2835 4896 1.138859 CCATCGCCAGATCCAACTACA 59.861 52.381 0.00 0.00 34.23 2.74
2905 4966 6.149633 GGCAATGTCTTTAACAAGGTAACAG 58.850 40.000 0.00 0.00 42.37 3.16
2939 5000 5.708736 TTCCCATTGCTAGATAGAACCAA 57.291 39.130 0.00 0.00 0.00 3.67
2944 5005 6.656693 CCCATTGCTAGATAGAACCAATTAGG 59.343 42.308 0.00 0.00 45.67 2.69
2964 5025 2.681344 GGGTCATACATCGGGTTTTCAC 59.319 50.000 0.00 0.00 0.00 3.18
3006 5076 2.422127 CACAACCAAAACGAAGTCACCT 59.578 45.455 0.00 0.00 45.00 4.00
3010 5080 2.422127 ACCAAAACGAAGTCACCTTGTG 59.578 45.455 0.00 0.00 45.00 3.33
3019 5089 0.751643 GTCACCTTGTGTTGCCACCT 60.752 55.000 0.00 0.00 41.09 4.00
3043 5113 4.034048 CCACTTGTGTAGAACAGTCACAAC 59.966 45.833 5.97 0.00 43.82 3.32
3074 5144 4.012374 CCATGTAAGTGAAGACCATGCTT 58.988 43.478 0.00 0.00 33.29 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.831742 ATCCTAGCGCCGAACGGA 60.832 61.111 17.63 3.21 43.93 4.69
3 4 1.480219 CGTTGATCCTAGCGCCGAAC 61.480 60.000 2.29 0.00 0.00 3.95
4 5 1.226859 CGTTGATCCTAGCGCCGAA 60.227 57.895 2.29 0.00 0.00 4.30
6 7 2.658593 CCGTTGATCCTAGCGCCG 60.659 66.667 2.29 0.00 0.00 6.46
7 8 1.883084 CACCGTTGATCCTAGCGCC 60.883 63.158 2.29 0.00 0.00 6.53
8 9 0.249489 ATCACCGTTGATCCTAGCGC 60.249 55.000 0.00 0.00 38.08 5.92
9 10 2.225068 AATCACCGTTGATCCTAGCG 57.775 50.000 0.00 0.00 42.00 4.26
10 11 2.614057 CCAAATCACCGTTGATCCTAGC 59.386 50.000 0.00 0.00 42.00 3.42
11 12 4.137116 TCCAAATCACCGTTGATCCTAG 57.863 45.455 0.00 0.00 42.00 3.02
12 13 4.703897 GATCCAAATCACCGTTGATCCTA 58.296 43.478 0.00 0.00 42.00 2.94
13 14 3.545703 GATCCAAATCACCGTTGATCCT 58.454 45.455 0.00 0.00 42.00 3.24
14 15 2.287915 CGATCCAAATCACCGTTGATCC 59.712 50.000 0.00 0.00 42.00 3.36
15 16 2.286418 GCGATCCAAATCACCGTTGATC 60.286 50.000 0.00 0.00 42.00 2.92
16 17 1.670811 GCGATCCAAATCACCGTTGAT 59.329 47.619 0.00 0.00 44.98 2.57
17 18 1.083489 GCGATCCAAATCACCGTTGA 58.917 50.000 0.00 0.00 35.73 3.18
18 19 0.247655 CGCGATCCAAATCACCGTTG 60.248 55.000 0.00 0.00 31.76 4.10
19 20 0.390603 TCGCGATCCAAATCACCGTT 60.391 50.000 3.71 0.00 31.75 4.44
20 21 1.082117 GTCGCGATCCAAATCACCGT 61.082 55.000 14.06 0.00 31.75 4.83
21 22 1.636340 GTCGCGATCCAAATCACCG 59.364 57.895 14.06 0.00 31.76 4.94
22 23 0.804544 TCGTCGCGATCCAAATCACC 60.805 55.000 14.06 0.00 31.76 4.02
23 24 0.572590 CTCGTCGCGATCCAAATCAC 59.427 55.000 14.06 0.00 34.61 3.06
24 25 0.172578 ACTCGTCGCGATCCAAATCA 59.827 50.000 14.06 0.00 34.61 2.57
25 26 1.779724 GTACTCGTCGCGATCCAAATC 59.220 52.381 14.06 0.00 34.61 2.17
26 27 1.836383 GTACTCGTCGCGATCCAAAT 58.164 50.000 14.06 0.00 34.61 2.32
27 28 0.521867 CGTACTCGTCGCGATCCAAA 60.522 55.000 14.06 0.00 34.61 3.28
28 29 1.061411 CGTACTCGTCGCGATCCAA 59.939 57.895 14.06 0.00 34.61 3.53
29 30 1.810853 TCGTACTCGTCGCGATCCA 60.811 57.895 14.06 0.00 34.61 3.41
30 31 1.367429 GTCGTACTCGTCGCGATCC 60.367 63.158 14.06 0.00 37.00 3.36
31 32 0.381668 GAGTCGTACTCGTCGCGATC 60.382 60.000 14.06 5.25 35.28 3.69
32 33 1.635281 GAGTCGTACTCGTCGCGAT 59.365 57.895 14.06 0.00 35.28 4.58
33 34 2.447887 GGAGTCGTACTCGTCGCGA 61.448 63.158 3.71 3.71 45.96 5.87
34 35 2.021106 GGAGTCGTACTCGTCGCG 59.979 66.667 0.00 0.00 45.96 5.87
35 36 0.316032 GATGGAGTCGTACTCGTCGC 60.316 60.000 8.33 0.00 45.96 5.19
36 37 1.004595 TGATGGAGTCGTACTCGTCG 58.995 55.000 8.33 0.00 45.96 5.12
37 38 2.477525 GGTTGATGGAGTCGTACTCGTC 60.478 54.545 8.33 9.13 45.96 4.20
38 39 1.471684 GGTTGATGGAGTCGTACTCGT 59.528 52.381 8.33 1.85 45.96 4.18
39 40 1.202268 GGGTTGATGGAGTCGTACTCG 60.202 57.143 8.33 0.00 45.96 4.18
40 41 1.136500 GGGGTTGATGGAGTCGTACTC 59.864 57.143 6.50 6.50 44.32 2.59
41 42 1.192428 GGGGTTGATGGAGTCGTACT 58.808 55.000 0.00 0.00 0.00 2.73
42 43 0.179119 CGGGGTTGATGGAGTCGTAC 60.179 60.000 0.00 0.00 0.00 3.67
43 44 0.612732 ACGGGGTTGATGGAGTCGTA 60.613 55.000 0.00 0.00 0.00 3.43
44 45 1.477685 AACGGGGTTGATGGAGTCGT 61.478 55.000 0.00 0.00 0.00 4.34
45 46 0.739813 GAACGGGGTTGATGGAGTCG 60.740 60.000 0.00 0.00 0.00 4.18
46 47 0.613777 AGAACGGGGTTGATGGAGTC 59.386 55.000 0.00 0.00 0.00 3.36
47 48 0.613777 GAGAACGGGGTTGATGGAGT 59.386 55.000 0.00 0.00 0.00 3.85
48 49 0.905357 AGAGAACGGGGTTGATGGAG 59.095 55.000 0.00 0.00 0.00 3.86
49 50 1.358152 AAGAGAACGGGGTTGATGGA 58.642 50.000 0.00 0.00 0.00 3.41
50 51 3.343941 TTAAGAGAACGGGGTTGATGG 57.656 47.619 0.00 0.00 0.00 3.51
51 52 3.124636 CGTTTAAGAGAACGGGGTTGATG 59.875 47.826 2.48 0.00 46.29 3.07
52 53 3.332034 CGTTTAAGAGAACGGGGTTGAT 58.668 45.455 2.48 0.00 46.29 2.57
53 54 2.758009 CGTTTAAGAGAACGGGGTTGA 58.242 47.619 2.48 0.00 46.29 3.18
61 62 5.443431 CGTGAGCAGAATCGTTTAAGAGAAC 60.443 44.000 0.00 0.00 0.00 3.01
62 63 4.621460 CGTGAGCAGAATCGTTTAAGAGAA 59.379 41.667 0.00 0.00 0.00 2.87
63 64 4.082949 TCGTGAGCAGAATCGTTTAAGAGA 60.083 41.667 0.00 0.00 0.00 3.10
64 65 4.166523 TCGTGAGCAGAATCGTTTAAGAG 58.833 43.478 0.00 0.00 0.00 2.85
65 66 4.168922 TCGTGAGCAGAATCGTTTAAGA 57.831 40.909 0.00 0.00 0.00 2.10
66 67 4.800993 AGATCGTGAGCAGAATCGTTTAAG 59.199 41.667 0.00 0.00 0.00 1.85
67 68 4.744570 AGATCGTGAGCAGAATCGTTTAA 58.255 39.130 0.00 0.00 0.00 1.52
68 69 4.371855 AGATCGTGAGCAGAATCGTTTA 57.628 40.909 0.00 0.00 0.00 2.01
69 70 3.238108 AGATCGTGAGCAGAATCGTTT 57.762 42.857 0.00 0.00 0.00 3.60
70 71 2.949451 AGATCGTGAGCAGAATCGTT 57.051 45.000 0.00 0.00 0.00 3.85
71 72 2.683362 TGTAGATCGTGAGCAGAATCGT 59.317 45.455 0.00 0.00 0.00 3.73
72 73 3.340337 TGTAGATCGTGAGCAGAATCG 57.660 47.619 0.00 0.00 0.00 3.34
73 74 4.047822 CCTTGTAGATCGTGAGCAGAATC 58.952 47.826 0.00 0.00 0.00 2.52
74 75 3.181471 CCCTTGTAGATCGTGAGCAGAAT 60.181 47.826 0.00 0.00 0.00 2.40
75 76 2.166459 CCCTTGTAGATCGTGAGCAGAA 59.834 50.000 0.00 0.00 0.00 3.02
76 77 1.751351 CCCTTGTAGATCGTGAGCAGA 59.249 52.381 0.00 0.00 0.00 4.26
77 78 1.478510 ACCCTTGTAGATCGTGAGCAG 59.521 52.381 0.00 0.00 0.00 4.24
78 79 1.557099 ACCCTTGTAGATCGTGAGCA 58.443 50.000 0.00 0.00 0.00 4.26
79 80 3.068307 ACATACCCTTGTAGATCGTGAGC 59.932 47.826 0.00 0.00 0.00 4.26
80 81 4.920640 ACATACCCTTGTAGATCGTGAG 57.079 45.455 0.00 0.00 0.00 3.51
88 89 5.509840 GGAGTGCATCTACATACCCTTGTAG 60.510 48.000 5.47 5.47 46.85 2.74
89 90 4.344102 GGAGTGCATCTACATACCCTTGTA 59.656 45.833 0.00 0.00 0.00 2.41
90 91 3.134804 GGAGTGCATCTACATACCCTTGT 59.865 47.826 0.00 0.00 0.00 3.16
91 92 3.495100 GGGAGTGCATCTACATACCCTTG 60.495 52.174 0.00 0.00 35.93 3.61
92 93 2.706190 GGGAGTGCATCTACATACCCTT 59.294 50.000 0.00 0.00 35.93 3.95
93 94 2.330216 GGGAGTGCATCTACATACCCT 58.670 52.381 0.00 0.00 35.93 4.34
94 95 1.348036 GGGGAGTGCATCTACATACCC 59.652 57.143 0.00 0.00 37.17 3.69
95 96 2.300437 GAGGGGAGTGCATCTACATACC 59.700 54.545 0.00 0.00 0.00 2.73
96 97 3.235200 AGAGGGGAGTGCATCTACATAC 58.765 50.000 0.00 0.00 0.00 2.39
97 98 3.501349 GAGAGGGGAGTGCATCTACATA 58.499 50.000 0.00 0.00 0.00 2.29
98 99 2.324541 GAGAGGGGAGTGCATCTACAT 58.675 52.381 0.00 0.00 0.00 2.29
99 100 1.689575 GGAGAGGGGAGTGCATCTACA 60.690 57.143 0.00 0.00 0.00 2.74
100 101 1.044611 GGAGAGGGGAGTGCATCTAC 58.955 60.000 0.00 0.00 0.00 2.59
101 102 0.468214 CGGAGAGGGGAGTGCATCTA 60.468 60.000 0.00 0.00 0.00 1.98
102 103 1.760086 CGGAGAGGGGAGTGCATCT 60.760 63.158 0.00 0.00 0.00 2.90
103 104 2.022240 GACGGAGAGGGGAGTGCATC 62.022 65.000 0.00 0.00 0.00 3.91
104 105 2.039624 ACGGAGAGGGGAGTGCAT 59.960 61.111 0.00 0.00 0.00 3.96
105 106 2.680352 GACGGAGAGGGGAGTGCA 60.680 66.667 0.00 0.00 0.00 4.57
106 107 3.827898 CGACGGAGAGGGGAGTGC 61.828 72.222 0.00 0.00 0.00 4.40
107 108 1.977544 AACGACGGAGAGGGGAGTG 60.978 63.158 0.00 0.00 0.00 3.51
108 109 1.977544 CAACGACGGAGAGGGGAGT 60.978 63.158 0.00 0.00 0.00 3.85
109 110 2.885861 CAACGACGGAGAGGGGAG 59.114 66.667 0.00 0.00 0.00 4.30
110 111 2.488771 TAGCAACGACGGAGAGGGGA 62.489 60.000 0.00 0.00 0.00 4.81
111 112 2.005960 CTAGCAACGACGGAGAGGGG 62.006 65.000 0.00 0.00 0.00 4.79
112 113 1.030488 TCTAGCAACGACGGAGAGGG 61.030 60.000 0.00 0.00 0.00 4.30
113 114 1.025812 ATCTAGCAACGACGGAGAGG 58.974 55.000 0.00 0.00 0.00 3.69
114 115 1.671328 TCATCTAGCAACGACGGAGAG 59.329 52.381 0.00 0.00 0.00 3.20
115 116 1.400846 GTCATCTAGCAACGACGGAGA 59.599 52.381 0.00 0.00 0.00 3.71
116 117 1.402259 AGTCATCTAGCAACGACGGAG 59.598 52.381 0.00 0.00 33.56 4.63
117 118 1.400846 GAGTCATCTAGCAACGACGGA 59.599 52.381 0.00 0.00 33.56 4.69
118 119 1.534175 GGAGTCATCTAGCAACGACGG 60.534 57.143 0.00 0.00 33.56 4.79
119 120 1.132453 TGGAGTCATCTAGCAACGACG 59.868 52.381 0.00 0.00 33.56 5.12
120 121 2.941453 TGGAGTCATCTAGCAACGAC 57.059 50.000 0.00 0.00 0.00 4.34
121 122 4.461198 TCTATGGAGTCATCTAGCAACGA 58.539 43.478 0.00 0.00 34.96 3.85
122 123 4.837896 TCTATGGAGTCATCTAGCAACG 57.162 45.455 0.00 0.00 34.96 4.10
123 124 6.753180 TCAATCTATGGAGTCATCTAGCAAC 58.247 40.000 0.00 0.00 34.96 4.17
124 125 6.983906 TCAATCTATGGAGTCATCTAGCAA 57.016 37.500 0.00 0.00 34.96 3.91
125 126 6.952938 AGATCAATCTATGGAGTCATCTAGCA 59.047 38.462 0.00 0.00 34.85 3.49
126 127 7.408756 AGATCAATCTATGGAGTCATCTAGC 57.591 40.000 0.00 0.00 34.85 3.42
127 128 8.252417 CCAAGATCAATCTATGGAGTCATCTAG 58.748 40.741 0.00 0.00 37.31 2.43
128 129 7.732140 ACCAAGATCAATCTATGGAGTCATCTA 59.268 37.037 19.34 0.00 37.92 1.98
129 130 6.558014 ACCAAGATCAATCTATGGAGTCATCT 59.442 38.462 19.34 0.00 37.92 2.90
130 131 6.649973 CACCAAGATCAATCTATGGAGTCATC 59.350 42.308 19.34 0.00 37.92 2.92
131 132 6.328410 TCACCAAGATCAATCTATGGAGTCAT 59.672 38.462 19.34 0.00 37.92 3.06
132 133 5.662657 TCACCAAGATCAATCTATGGAGTCA 59.337 40.000 19.34 3.88 37.92 3.41
133 134 6.166984 TCACCAAGATCAATCTATGGAGTC 57.833 41.667 19.34 0.00 37.92 3.36
134 135 6.531923 CATCACCAAGATCAATCTATGGAGT 58.468 40.000 19.34 8.56 37.92 3.85
135 136 5.411977 GCATCACCAAGATCAATCTATGGAG 59.588 44.000 19.34 14.57 37.92 3.86
136 137 5.072736 AGCATCACCAAGATCAATCTATGGA 59.927 40.000 19.34 6.96 37.92 3.41
137 138 5.314529 AGCATCACCAAGATCAATCTATGG 58.685 41.667 14.46 14.46 39.18 2.74
138 139 6.879276 AAGCATCACCAAGATCAATCTATG 57.121 37.500 0.00 0.00 35.76 2.23
139 140 7.971201 TCTAAGCATCACCAAGATCAATCTAT 58.029 34.615 0.00 0.00 35.76 1.98
140 141 7.365497 TCTAAGCATCACCAAGATCAATCTA 57.635 36.000 0.00 0.00 35.76 1.98
141 142 6.244552 TCTAAGCATCACCAAGATCAATCT 57.755 37.500 0.00 0.00 39.22 2.40
142 143 6.932356 TTCTAAGCATCACCAAGATCAATC 57.068 37.500 0.00 0.00 33.72 2.67
143 144 7.707624 TTTTCTAAGCATCACCAAGATCAAT 57.292 32.000 0.00 0.00 33.72 2.57
144 145 7.707624 ATTTTCTAAGCATCACCAAGATCAA 57.292 32.000 0.00 0.00 33.72 2.57
145 146 7.707624 AATTTTCTAAGCATCACCAAGATCA 57.292 32.000 0.00 0.00 33.72 2.92
146 147 8.992835 AAAATTTTCTAAGCATCACCAAGATC 57.007 30.769 0.00 0.00 33.72 2.75
165 166 9.448438 GGGGAATGTAGCAGAATTTTAAAATTT 57.552 29.630 23.44 12.55 38.64 1.82
166 167 8.601546 TGGGGAATGTAGCAGAATTTTAAAATT 58.398 29.630 22.95 22.95 41.06 1.82
167 168 8.144862 TGGGGAATGTAGCAGAATTTTAAAAT 57.855 30.769 7.64 7.64 0.00 1.82
168 169 7.546250 TGGGGAATGTAGCAGAATTTTAAAA 57.454 32.000 2.51 2.51 0.00 1.52
169 170 7.015682 TGTTGGGGAATGTAGCAGAATTTTAAA 59.984 33.333 0.00 0.00 0.00 1.52
170 171 6.495181 TGTTGGGGAATGTAGCAGAATTTTAA 59.505 34.615 0.00 0.00 0.00 1.52
171 172 6.013379 TGTTGGGGAATGTAGCAGAATTTTA 58.987 36.000 0.00 0.00 0.00 1.52
172 173 4.837860 TGTTGGGGAATGTAGCAGAATTTT 59.162 37.500 0.00 0.00 0.00 1.82
173 174 4.415596 TGTTGGGGAATGTAGCAGAATTT 58.584 39.130 0.00 0.00 0.00 1.82
174 175 4.019174 CTGTTGGGGAATGTAGCAGAATT 58.981 43.478 0.00 0.00 0.00 2.17
175 176 3.624777 CTGTTGGGGAATGTAGCAGAAT 58.375 45.455 0.00 0.00 0.00 2.40
176 177 2.290896 CCTGTTGGGGAATGTAGCAGAA 60.291 50.000 0.00 0.00 0.00 3.02
177 178 1.281867 CCTGTTGGGGAATGTAGCAGA 59.718 52.381 0.00 0.00 0.00 4.26
178 179 1.004745 ACCTGTTGGGGAATGTAGCAG 59.995 52.381 0.00 0.00 40.03 4.24
179 180 1.072266 ACCTGTTGGGGAATGTAGCA 58.928 50.000 0.00 0.00 40.03 3.49
180 181 1.818674 CAACCTGTTGGGGAATGTAGC 59.181 52.381 2.03 0.00 40.03 3.58
181 182 1.818674 GCAACCTGTTGGGGAATGTAG 59.181 52.381 11.66 0.00 40.74 2.74
182 183 1.145945 TGCAACCTGTTGGGGAATGTA 59.854 47.619 11.66 0.00 40.74 2.29
183 184 0.105760 TGCAACCTGTTGGGGAATGT 60.106 50.000 11.66 0.00 40.74 2.71
184 185 0.604578 CTGCAACCTGTTGGGGAATG 59.395 55.000 11.66 0.00 40.74 2.67
185 186 1.187567 GCTGCAACCTGTTGGGGAAT 61.188 55.000 11.66 0.00 40.74 3.01
186 187 1.832167 GCTGCAACCTGTTGGGGAA 60.832 57.895 11.66 0.00 40.74 3.97
187 188 2.203480 GCTGCAACCTGTTGGGGA 60.203 61.111 11.66 0.00 40.74 4.81
188 189 2.521465 TGCTGCAACCTGTTGGGG 60.521 61.111 11.66 0.00 40.74 4.96
189 190 1.466025 ATGTGCTGCAACCTGTTGGG 61.466 55.000 2.77 0.00 40.74 4.12
190 191 0.038892 GATGTGCTGCAACCTGTTGG 60.039 55.000 2.77 0.00 40.74 3.77
191 192 0.956633 AGATGTGCTGCAACCTGTTG 59.043 50.000 2.77 5.66 43.14 3.33
192 193 1.610522 GAAGATGTGCTGCAACCTGTT 59.389 47.619 2.77 0.00 0.00 3.16
193 194 1.242076 GAAGATGTGCTGCAACCTGT 58.758 50.000 2.77 0.00 0.00 4.00
194 195 0.167470 CGAAGATGTGCTGCAACCTG 59.833 55.000 2.77 0.00 0.00 4.00
195 196 0.250467 ACGAAGATGTGCTGCAACCT 60.250 50.000 2.77 0.00 0.00 3.50
220 221 2.049063 GCTGTGACCTCGCGACTT 60.049 61.111 3.71 0.00 0.00 3.01
221 222 2.983930 GAGCTGTGACCTCGCGACT 61.984 63.158 3.71 0.00 0.00 4.18
222 223 2.505118 GAGCTGTGACCTCGCGAC 60.505 66.667 3.71 0.00 0.00 5.19
264 265 4.380655 GGATATTGCTACTATCGGCGAAGT 60.381 45.833 15.93 19.86 0.00 3.01
265 266 4.106197 GGATATTGCTACTATCGGCGAAG 58.894 47.826 15.93 15.05 0.00 3.79
267 268 3.086282 TGGATATTGCTACTATCGGCGA 58.914 45.455 13.87 13.87 0.00 5.54
268 269 3.503827 TGGATATTGCTACTATCGGCG 57.496 47.619 0.00 0.00 0.00 6.46
269 270 4.822026 AGTTGGATATTGCTACTATCGGC 58.178 43.478 0.00 0.00 0.00 5.54
270 271 6.980978 CCATAGTTGGATATTGCTACTATCGG 59.019 42.308 0.00 0.00 46.92 4.18
271 272 7.548097 ACCATAGTTGGATATTGCTACTATCG 58.452 38.462 0.00 0.00 46.92 2.92
289 290 3.160679 AGGAAAAGCTGCAACCATAGT 57.839 42.857 1.02 0.00 0.00 2.12
319 320 3.356290 AGAAAGCTTCAACCGGCATTAT 58.644 40.909 0.00 0.00 0.00 1.28
321 322 1.541588 GAGAAAGCTTCAACCGGCATT 59.458 47.619 0.00 0.00 0.00 3.56
322 323 1.168714 GAGAAAGCTTCAACCGGCAT 58.831 50.000 0.00 0.00 0.00 4.40
323 324 0.108585 AGAGAAAGCTTCAACCGGCA 59.891 50.000 0.00 0.00 0.00 5.69
324 325 2.094762 TAGAGAAAGCTTCAACCGGC 57.905 50.000 0.00 0.00 0.00 6.13
325 326 4.130286 AGATAGAGAAAGCTTCAACCGG 57.870 45.455 0.00 0.00 0.00 5.28
326 327 5.694006 CCATAGATAGAGAAAGCTTCAACCG 59.306 44.000 0.00 0.00 0.00 4.44
327 328 6.587273 ACCATAGATAGAGAAAGCTTCAACC 58.413 40.000 0.00 0.00 0.00 3.77
328 329 7.766278 TCAACCATAGATAGAGAAAGCTTCAAC 59.234 37.037 0.00 0.00 0.00 3.18
329 330 7.851228 TCAACCATAGATAGAGAAAGCTTCAA 58.149 34.615 0.00 0.00 0.00 2.69
330 331 7.423844 TCAACCATAGATAGAGAAAGCTTCA 57.576 36.000 0.00 0.00 0.00 3.02
331 332 7.042119 GCTTCAACCATAGATAGAGAAAGCTTC 60.042 40.741 0.00 0.00 0.00 3.86
372 373 4.074970 CCATCACCTAAAACAGCTTCAGT 58.925 43.478 0.00 0.00 0.00 3.41
373 374 4.074970 ACCATCACCTAAAACAGCTTCAG 58.925 43.478 0.00 0.00 0.00 3.02
436 437 1.602311 CAAGGAGATACCATGGCTGC 58.398 55.000 13.04 6.45 42.04 5.25
440 441 1.492176 ACCAGCAAGGAGATACCATGG 59.508 52.381 11.19 11.19 41.22 3.66
465 466 1.930371 GCAAACGTGTTGGGAGAATGC 60.930 52.381 10.89 0.00 0.00 3.56
466 467 1.608590 AGCAAACGTGTTGGGAGAATG 59.391 47.619 10.89 0.00 0.00 2.67
470 471 1.515521 GGGAGCAAACGTGTTGGGAG 61.516 60.000 10.89 0.00 0.00 4.30
471 472 1.527380 GGGAGCAAACGTGTTGGGA 60.527 57.895 10.89 0.00 0.00 4.37
474 475 2.903547 CGGGGGAGCAAACGTGTTG 61.904 63.158 0.00 0.00 0.00 3.33
475 476 2.593436 CGGGGGAGCAAACGTGTT 60.593 61.111 0.00 0.00 0.00 3.32
476 477 3.868985 ACGGGGGAGCAAACGTGT 61.869 61.111 0.00 0.00 38.24 4.49
478 479 4.636435 CCACGGGGGAGCAAACGT 62.636 66.667 0.00 0.00 40.01 3.99
479 480 4.636435 ACCACGGGGGAGCAAACG 62.636 66.667 9.50 0.00 41.15 3.60
480 481 2.671963 GACCACGGGGGAGCAAAC 60.672 66.667 9.50 0.00 41.15 2.93
485 486 2.928396 AAGGTGACCACGGGGGAG 60.928 66.667 9.50 0.00 41.15 4.30
486 487 2.926242 GAAGGTGACCACGGGGGA 60.926 66.667 9.50 0.00 41.15 4.81
526 527 4.124351 CTGCAACCATGGCGGCTG 62.124 66.667 23.89 20.36 39.03 4.85
534 535 2.203337 ACCACGTGCTGCAACCAT 60.203 55.556 10.91 0.00 0.00 3.55
581 582 4.459089 GCCACCACGAGCTCCCTC 62.459 72.222 8.47 0.00 34.66 4.30
616 617 2.899339 GCGCTGCATCCCTCCTTC 60.899 66.667 0.00 0.00 0.00 3.46
622 623 3.869272 CTCAACGCGCTGCATCCC 61.869 66.667 5.73 0.00 0.00 3.85
625 626 1.062587 GTATTTCTCAACGCGCTGCAT 59.937 47.619 5.73 0.00 0.00 3.96
626 627 0.442310 GTATTTCTCAACGCGCTGCA 59.558 50.000 5.73 0.00 0.00 4.41
627 628 0.584054 CGTATTTCTCAACGCGCTGC 60.584 55.000 5.73 0.00 31.66 5.25
628 629 0.025001 CCGTATTTCTCAACGCGCTG 59.975 55.000 5.73 3.88 37.78 5.18
629 630 1.693083 GCCGTATTTCTCAACGCGCT 61.693 55.000 5.73 0.00 37.78 5.92
630 631 1.296649 GCCGTATTTCTCAACGCGC 60.297 57.895 5.73 0.00 37.78 6.86
631 632 0.025001 CAGCCGTATTTCTCAACGCG 59.975 55.000 3.53 3.53 37.78 6.01
635 636 1.906574 ACCTCCAGCCGTATTTCTCAA 59.093 47.619 0.00 0.00 0.00 3.02
636 637 1.568504 ACCTCCAGCCGTATTTCTCA 58.431 50.000 0.00 0.00 0.00 3.27
670 675 2.758737 ACCGCCTCCTTCCCTACG 60.759 66.667 0.00 0.00 0.00 3.51
699 704 1.520666 CCGGACCGGCATAGAAAGT 59.479 57.895 22.37 0.00 41.17 2.66
700 705 4.438346 CCGGACCGGCATAGAAAG 57.562 61.111 22.37 0.00 41.17 2.62
711 717 3.723348 GCTTCAACGTGCCGGACC 61.723 66.667 5.05 0.00 0.00 4.46
742 748 1.581447 CCAAACTTTCAGCCGGCTC 59.419 57.895 30.29 0.00 0.00 4.70
743 749 2.564721 GCCAAACTTTCAGCCGGCT 61.565 57.895 27.08 27.08 36.58 5.52
744 750 2.049156 GCCAAACTTTCAGCCGGC 60.049 61.111 21.89 21.89 0.00 6.13
745 751 2.650778 GGCCAAACTTTCAGCCGG 59.349 61.111 0.00 0.00 35.30 6.13
748 754 2.049156 GCCGGCCAAACTTTCAGC 60.049 61.111 18.11 0.00 0.00 4.26
749 755 2.255252 CGCCGGCCAAACTTTCAG 59.745 61.111 23.46 0.00 0.00 3.02
750 756 2.517402 ACGCCGGCCAAACTTTCA 60.517 55.556 23.46 0.00 0.00 2.69
751 757 2.050442 CACGCCGGCCAAACTTTC 60.050 61.111 23.46 0.00 0.00 2.62
752 758 4.279043 GCACGCCGGCCAAACTTT 62.279 61.111 23.46 0.00 0.00 2.66
776 782 2.400408 GCACGATTGTTTAGCACGTTTG 59.600 45.455 0.00 0.00 35.05 2.93
777 783 2.289547 AGCACGATTGTTTAGCACGTTT 59.710 40.909 0.00 0.00 35.05 3.60
778 784 1.871039 AGCACGATTGTTTAGCACGTT 59.129 42.857 0.00 0.00 35.05 3.99
779 785 1.508632 AGCACGATTGTTTAGCACGT 58.491 45.000 0.00 0.00 37.68 4.49
781 787 5.030874 AGTTTAGCACGATTGTTTAGCAC 57.969 39.130 0.00 0.00 0.00 4.40
782 788 6.160684 TCTAGTTTAGCACGATTGTTTAGCA 58.839 36.000 0.00 0.00 0.00 3.49
813 830 4.227982 TGGATCTTGGACATTGATTCCTCA 59.772 41.667 0.00 0.00 33.84 3.86
822 839 2.505407 TCCACGATGGATCTTGGACATT 59.495 45.455 10.10 0.00 46.44 2.71
824 841 1.567357 TCCACGATGGATCTTGGACA 58.433 50.000 10.10 0.00 46.44 4.02
858 875 0.035739 TCGTAACCTTCCCCAACTGC 59.964 55.000 0.00 0.00 0.00 4.40
983 1000 5.000591 TGCTGTTGATCAACGATCCTTTTA 58.999 37.500 28.55 10.83 43.94 1.52
1020 1037 1.490693 CTGCGCCATGGCTAACGTAG 61.491 60.000 33.07 21.62 39.32 3.51
1297 1314 0.830444 TCACCTCGTACTTGGCCAGT 60.830 55.000 5.11 9.35 39.87 4.00
1711 1728 0.250081 GGAAGATGTCCGGCTCCATC 60.250 60.000 16.34 16.34 36.40 3.51
1855 1872 2.875672 GCACAACTCTCCTTGGCACATA 60.876 50.000 0.00 0.00 39.30 2.29
1932 1949 0.179062 ATCCTTGAGCCGCTCACATC 60.179 55.000 22.82 0.00 40.46 3.06
1967 1984 4.206477 TCATTGATTCCTGTGACGACAT 57.794 40.909 0.00 0.00 0.00 3.06
1976 1993 4.976224 TGACTGCAATCATTGATTCCTG 57.024 40.909 8.95 7.22 28.87 3.86
2026 2043 4.541973 ATCAAGCATGGGGAAACTTTTC 57.458 40.909 0.00 0.00 36.46 2.29
2050 2067 0.252284 TCTCCTCGGGGCTCTTTTCT 60.252 55.000 0.00 0.00 0.00 2.52
2076 2093 0.174845 TGATTACTTCCTGGCGACGG 59.825 55.000 0.00 0.00 0.00 4.79
2077 2094 2.004583 TTGATTACTTCCTGGCGACG 57.995 50.000 0.00 0.00 0.00 5.12
2078 2095 2.096013 GCTTTGATTACTTCCTGGCGAC 59.904 50.000 0.00 0.00 0.00 5.19
2159 2177 2.897969 TCTACCTGTCAACCAACCTCTC 59.102 50.000 0.00 0.00 0.00 3.20
2160 2178 2.900546 CTCTACCTGTCAACCAACCTCT 59.099 50.000 0.00 0.00 0.00 3.69
2161 2179 2.633481 ACTCTACCTGTCAACCAACCTC 59.367 50.000 0.00 0.00 0.00 3.85
2282 2300 5.036737 CGGGAATTGCAAGCTAAAAGTATG 58.963 41.667 4.94 0.00 0.00 2.39
2338 2356 1.474478 ACATGGAGTGCGAGAGTAGTG 59.526 52.381 0.00 0.00 0.00 2.74
2462 2480 9.588096 AACTGTACCAAGGAAAATCTCTTTTAT 57.412 29.630 0.00 0.00 34.73 1.40
2486 2504 7.602517 ATCTAAGCAAGTATGTGACAAGAAC 57.397 36.000 0.00 0.00 0.00 3.01
2521 2539 9.797556 GGGCGAAAGTTTGACTATAAATTTAAT 57.202 29.630 1.21 0.00 0.00 1.40
2531 2549 3.695060 TGTTTTGGGCGAAAGTTTGACTA 59.305 39.130 0.00 0.00 0.00 2.59
2533 2551 2.882324 TGTTTTGGGCGAAAGTTTGAC 58.118 42.857 0.00 0.00 0.00 3.18
2534 2552 3.193691 TCTTGTTTTGGGCGAAAGTTTGA 59.806 39.130 0.00 0.00 0.00 2.69
2535 2553 3.516615 TCTTGTTTTGGGCGAAAGTTTG 58.483 40.909 0.00 0.00 0.00 2.93
2536 2554 3.445805 TCTCTTGTTTTGGGCGAAAGTTT 59.554 39.130 0.00 0.00 0.00 2.66
2537 2555 3.020984 TCTCTTGTTTTGGGCGAAAGTT 58.979 40.909 0.00 0.00 0.00 2.66
2538 2556 2.618709 CTCTCTTGTTTTGGGCGAAAGT 59.381 45.455 0.00 0.00 0.00 2.66
2539 2557 2.030805 CCTCTCTTGTTTTGGGCGAAAG 60.031 50.000 0.00 0.00 0.00 2.62
2541 2559 1.604604 CCTCTCTTGTTTTGGGCGAA 58.395 50.000 0.00 0.00 0.00 4.70
2542 2560 0.250727 CCCTCTCTTGTTTTGGGCGA 60.251 55.000 0.00 0.00 0.00 5.54
2543 2561 2.257353 CCCTCTCTTGTTTTGGGCG 58.743 57.895 0.00 0.00 0.00 6.13
2545 2563 0.113190 AGGCCCTCTCTTGTTTTGGG 59.887 55.000 0.00 0.00 40.74 4.12
2546 2564 2.879103 TAGGCCCTCTCTTGTTTTGG 57.121 50.000 0.00 0.00 0.00 3.28
2548 2566 5.715279 GGTTTAATAGGCCCTCTCTTGTTTT 59.285 40.000 0.00 0.00 0.00 2.43
2549 2567 5.262009 GGTTTAATAGGCCCTCTCTTGTTT 58.738 41.667 0.00 0.00 0.00 2.83
2550 2568 4.625564 CGGTTTAATAGGCCCTCTCTTGTT 60.626 45.833 0.00 0.00 0.00 2.83
2551 2569 3.118371 CGGTTTAATAGGCCCTCTCTTGT 60.118 47.826 0.00 0.00 0.00 3.16
2552 2570 3.134081 TCGGTTTAATAGGCCCTCTCTTG 59.866 47.826 0.00 0.00 0.00 3.02
2553 2571 3.381335 TCGGTTTAATAGGCCCTCTCTT 58.619 45.455 0.00 0.00 0.00 2.85
2554 2572 2.966516 CTCGGTTTAATAGGCCCTCTCT 59.033 50.000 0.00 0.00 0.00 3.10
2555 2573 2.548280 GCTCGGTTTAATAGGCCCTCTC 60.548 54.545 0.00 0.00 0.00 3.20
2556 2574 1.416772 GCTCGGTTTAATAGGCCCTCT 59.583 52.381 0.00 0.00 0.00 3.69
2557 2575 1.872653 CGCTCGGTTTAATAGGCCCTC 60.873 57.143 0.00 0.00 0.00 4.30
2568 4628 0.531200 CTACTCCCTTCGCTCGGTTT 59.469 55.000 0.00 0.00 0.00 3.27
2597 4657 3.197790 CTGCCATCGCTCGGTTGG 61.198 66.667 7.49 7.49 35.36 3.77
2598 4658 2.434884 ACTGCCATCGCTCGGTTG 60.435 61.111 0.00 0.00 35.36 3.77
2599 4659 2.434884 CACTGCCATCGCTCGGTT 60.435 61.111 0.00 0.00 35.36 4.44
2600 4660 4.457496 CCACTGCCATCGCTCGGT 62.457 66.667 0.00 0.00 35.36 4.69
2601 4661 2.930385 ATTCCACTGCCATCGCTCGG 62.930 60.000 0.00 0.00 35.36 4.63
2602 4662 1.493950 GATTCCACTGCCATCGCTCG 61.494 60.000 0.00 0.00 35.36 5.03
2603 4663 0.462581 TGATTCCACTGCCATCGCTC 60.463 55.000 0.00 0.00 35.36 5.03
2604 4664 0.182061 ATGATTCCACTGCCATCGCT 59.818 50.000 0.00 0.00 35.36 4.93
2605 4665 1.027357 AATGATTCCACTGCCATCGC 58.973 50.000 0.00 0.00 0.00 4.58
2606 4666 4.898829 TTAAATGATTCCACTGCCATCG 57.101 40.909 0.00 0.00 0.00 3.84
2607 4667 9.598517 TTATTTTTAAATGATTCCACTGCCATC 57.401 29.630 0.00 0.00 0.00 3.51
2653 4713 6.555812 GAGTTTGTTTTTACTCCACCTAGG 57.444 41.667 7.41 7.41 35.78 3.02
2687 4747 8.256611 TGTTGTAGCTTGAAGATCACTATTTC 57.743 34.615 0.00 0.00 0.00 2.17
2723 4783 6.298441 TCATGTAAGAGATCATTGGTGTGA 57.702 37.500 0.00 0.00 0.00 3.58
2741 4801 6.016192 TCTCTCTCTCGTTGTACTTTTCATGT 60.016 38.462 0.00 0.00 0.00 3.21
2742 4802 6.382608 TCTCTCTCTCGTTGTACTTTTCATG 58.617 40.000 0.00 0.00 0.00 3.07
2796 4857 1.202076 GGCAGCACTTGAGCGTATTTC 60.202 52.381 0.00 0.00 40.15 2.17
2814 4875 0.106708 TAGTTGGATCTGGCGATGGC 59.893 55.000 0.00 0.00 38.90 4.40
2876 4937 3.907894 TGTTAAAGACATTGCCCGAAC 57.092 42.857 0.00 0.00 32.00 3.95
2879 4940 2.556622 ACCTTGTTAAAGACATTGCCCG 59.443 45.455 0.00 0.00 38.26 6.13
2881 4942 6.079424 TGTTACCTTGTTAAAGACATTGCC 57.921 37.500 0.00 0.00 38.26 4.52
2919 4980 6.656693 CCTAATTGGTTCTATCTAGCAATGGG 59.343 42.308 0.00 0.00 41.40 4.00
2927 4988 9.615660 ATGTATGACCCTAATTGGTTCTATCTA 57.384 33.333 0.00 0.00 39.24 1.98
2939 5000 5.104277 TGAAAACCCGATGTATGACCCTAAT 60.104 40.000 0.00 0.00 0.00 1.73
2944 5005 2.681344 GGTGAAAACCCGATGTATGACC 59.319 50.000 0.00 0.00 0.00 4.02
2964 5025 4.034510 GTGCTTCTCAAATACCATTCTCGG 59.965 45.833 0.00 0.00 0.00 4.63
2973 5043 5.173131 CGTTTTGGTTGTGCTTCTCAAATAC 59.827 40.000 0.00 0.00 0.00 1.89
3010 5080 0.751643 ACACAAGTGGAGGTGGCAAC 60.752 55.000 0.00 0.00 39.31 4.17
3019 5089 3.449377 TGTGACTGTTCTACACAAGTGGA 59.551 43.478 5.08 0.00 40.72 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.