Multiple sequence alignment - TraesCS2B01G494900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G494900 chr2B 100.000 2761 0 0 1 2761 691811779 691809019 0.000000e+00 5099
1 TraesCS2B01G494900 chr2B 86.538 572 65 9 2195 2761 631607678 631608242 1.090000e-173 619
2 TraesCS2B01G494900 chr2D 91.709 2774 133 36 37 2761 575771564 575768839 0.000000e+00 3759
3 TraesCS2B01G494900 chr2D 88.803 518 53 4 2245 2761 531768810 531769323 5.020000e-177 630
4 TraesCS2B01G494900 chr2A 89.953 2140 114 46 71 2174 713937281 713935207 0.000000e+00 2667
5 TraesCS2B01G494900 chr2A 88.224 518 55 5 2245 2761 676374810 676375322 5.050000e-172 614
6 TraesCS2B01G494900 chr6B 87.674 576 58 11 2194 2761 688752578 688753148 0.000000e+00 658
7 TraesCS2B01G494900 chr4A 87.831 567 62 4 2195 2761 736822603 736822044 0.000000e+00 658
8 TraesCS2B01G494900 chr4A 86.292 569 68 7 2195 2761 735742131 735741571 6.540000e-171 610
9 TraesCS2B01G494900 chr4A 86.496 548 62 7 2217 2761 736425661 736426199 2.370000e-165 592
10 TraesCS2B01G494900 chr1D 86.372 565 70 6 2196 2759 475867904 475867346 6.540000e-171 610
11 TraesCS2B01G494900 chr5B 77.522 347 44 15 1249 1593 423225524 423225838 7.860000e-41 178
12 TraesCS2B01G494900 chr5B 89.011 91 10 0 1050 1140 423225352 423225442 2.250000e-21 113
13 TraesCS2B01G494900 chr5D 91.304 92 8 0 1050 1141 358010362 358010453 2.890000e-25 126
14 TraesCS2B01G494900 chr5A 90.110 91 9 0 1050 1140 458966879 458966969 4.830000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G494900 chr2B 691809019 691811779 2760 True 5099 5099 100.000 1 2761 1 chr2B.!!$R1 2760
1 TraesCS2B01G494900 chr2B 631607678 631608242 564 False 619 619 86.538 2195 2761 1 chr2B.!!$F1 566
2 TraesCS2B01G494900 chr2D 575768839 575771564 2725 True 3759 3759 91.709 37 2761 1 chr2D.!!$R1 2724
3 TraesCS2B01G494900 chr2D 531768810 531769323 513 False 630 630 88.803 2245 2761 1 chr2D.!!$F1 516
4 TraesCS2B01G494900 chr2A 713935207 713937281 2074 True 2667 2667 89.953 71 2174 1 chr2A.!!$R1 2103
5 TraesCS2B01G494900 chr2A 676374810 676375322 512 False 614 614 88.224 2245 2761 1 chr2A.!!$F1 516
6 TraesCS2B01G494900 chr6B 688752578 688753148 570 False 658 658 87.674 2194 2761 1 chr6B.!!$F1 567
7 TraesCS2B01G494900 chr4A 736822044 736822603 559 True 658 658 87.831 2195 2761 1 chr4A.!!$R2 566
8 TraesCS2B01G494900 chr4A 735741571 735742131 560 True 610 610 86.292 2195 2761 1 chr4A.!!$R1 566
9 TraesCS2B01G494900 chr4A 736425661 736426199 538 False 592 592 86.496 2217 2761 1 chr4A.!!$F1 544
10 TraesCS2B01G494900 chr1D 475867346 475867904 558 True 610 610 86.372 2196 2759 1 chr1D.!!$R1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.105964 ACGGAGTGTGTAGCAAAGCA 59.894 50.0 0.0 0.0 42.51 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 1939 0.248336 CGTACGCAGATTCGCCTGTA 60.248 55.0 0.52 0.0 36.57 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.100404 ATACTCTAAGTAGATCGACGGAGT 57.900 41.667 23.22 23.22 37.58 3.85
24 25 5.927689 ATACTCTAAGTAGATCGACGGAGTG 59.072 44.000 25.61 18.13 35.50 3.51
25 26 6.462768 ATACTCTAAGTAGATCGACGGAGTGT 60.463 42.308 25.61 20.91 35.50 3.55
26 27 8.424834 ATACTCTAAGTAGATCGACGGAGTGTG 61.425 44.444 25.61 14.26 35.50 3.82
35 36 2.914379 ACGGAGTGTGTAGCAAAGC 58.086 52.632 0.00 0.00 42.51 3.51
36 37 0.105964 ACGGAGTGTGTAGCAAAGCA 59.894 50.000 0.00 0.00 42.51 3.91
37 38 1.225855 CGGAGTGTGTAGCAAAGCAA 58.774 50.000 0.00 0.00 0.00 3.91
38 39 1.601903 CGGAGTGTGTAGCAAAGCAAA 59.398 47.619 0.00 0.00 0.00 3.68
39 40 2.032799 CGGAGTGTGTAGCAAAGCAAAA 59.967 45.455 0.00 0.00 0.00 2.44
40 41 3.488384 CGGAGTGTGTAGCAAAGCAAAAA 60.488 43.478 0.00 0.00 0.00 1.94
41 42 4.044426 GGAGTGTGTAGCAAAGCAAAAAG 58.956 43.478 0.00 0.00 0.00 2.27
42 43 4.202010 GGAGTGTGTAGCAAAGCAAAAAGA 60.202 41.667 0.00 0.00 0.00 2.52
43 44 5.323371 AGTGTGTAGCAAAGCAAAAAGAA 57.677 34.783 0.00 0.00 0.00 2.52
44 45 5.719173 AGTGTGTAGCAAAGCAAAAAGAAA 58.281 33.333 0.00 0.00 0.00 2.52
45 46 6.162777 AGTGTGTAGCAAAGCAAAAAGAAAA 58.837 32.000 0.00 0.00 0.00 2.29
46 47 6.648725 AGTGTGTAGCAAAGCAAAAAGAAAAA 59.351 30.769 0.00 0.00 0.00 1.94
66 67 3.741476 GGTGCCTTTGCCGAGCAG 61.741 66.667 0.00 0.00 40.61 4.24
67 68 3.741476 GTGCCTTTGCCGAGCAGG 61.741 66.667 0.00 0.00 40.61 4.85
182 186 4.148825 GCACAGATCCCGGCGACT 62.149 66.667 9.30 0.00 0.00 4.18
296 314 3.563808 TCGAGGAATTTTGACCACTGTTG 59.436 43.478 0.00 0.00 0.00 3.33
363 381 3.541632 TCGACAAAAGCCACTCTCTTTT 58.458 40.909 0.00 0.00 42.53 2.27
367 385 2.071778 AAAGCCACTCTCTTTTGCCA 57.928 45.000 0.00 0.00 30.21 4.92
374 392 1.349357 ACTCTCTTTTGCCAGTCCTCC 59.651 52.381 0.00 0.00 0.00 4.30
541 559 3.933332 GCTAGTTAATGAAGTTGGCGAGT 59.067 43.478 0.00 0.00 0.00 4.18
566 584 4.771356 CGACGCTCCGAAGCCGAA 62.771 66.667 0.00 0.00 46.34 4.30
897 921 3.039526 CCCTCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
898 922 2.612251 CCTCTCCCTCCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
899 923 2.612251 CTCTCCCTCCCTCCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
900 924 3.036959 TCTCCCTCCCTCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
901 925 3.368501 CTCCCTCCCTCCCTCCCA 61.369 72.222 0.00 0.00 0.00 4.37
902 926 2.628465 TCCCTCCCTCCCTCCCAT 60.628 66.667 0.00 0.00 0.00 4.00
903 927 2.272170 TCCCTCCCTCCCTCCCATT 61.272 63.158 0.00 0.00 0.00 3.16
904 928 2.081161 CCCTCCCTCCCTCCCATTG 61.081 68.421 0.00 0.00 0.00 2.82
938 962 4.724602 GCCAGCAGAGCACGACGA 62.725 66.667 0.00 0.00 0.00 4.20
939 963 2.807045 CCAGCAGAGCACGACGAC 60.807 66.667 0.00 0.00 0.00 4.34
940 964 3.168604 CAGCAGAGCACGACGACG 61.169 66.667 5.58 5.58 45.75 5.12
945 969 2.428569 GAGCACGACGACGCTTCA 60.429 61.111 15.63 0.00 43.96 3.02
982 1006 1.239296 CCGATAGCCCGATACCACGA 61.239 60.000 0.00 0.00 35.09 4.35
983 1007 0.168348 CGATAGCCCGATACCACGAG 59.832 60.000 0.00 0.00 35.09 4.18
984 1008 1.245732 GATAGCCCGATACCACGAGT 58.754 55.000 0.00 0.00 35.09 4.18
985 1009 0.959553 ATAGCCCGATACCACGAGTG 59.040 55.000 0.00 0.00 35.09 3.51
986 1010 0.107066 TAGCCCGATACCACGAGTGA 60.107 55.000 4.59 0.00 35.09 3.41
987 1011 1.226888 GCCCGATACCACGAGTGAC 60.227 63.158 4.59 0.00 35.09 3.67
988 1012 1.664321 GCCCGATACCACGAGTGACT 61.664 60.000 4.59 0.00 35.09 3.41
1145 1169 2.759560 GGCCTCCCGGGTACGTAA 60.760 66.667 22.86 0.00 38.78 3.18
1147 1171 2.800736 CCTCCCGGGTACGTAACG 59.199 66.667 22.86 9.11 38.78 3.18
1148 1172 1.748879 CCTCCCGGGTACGTAACGA 60.749 63.158 22.86 4.79 38.78 3.85
1149 1173 1.312371 CCTCCCGGGTACGTAACGAA 61.312 60.000 22.86 0.00 38.78 3.85
1150 1174 0.179163 CTCCCGGGTACGTAACGAAC 60.179 60.000 22.86 0.00 38.78 3.95
1205 1244 1.324736 GTAGCTCTTGTTCGATTGGCG 59.675 52.381 0.00 0.00 42.69 5.69
1207 1246 0.095417 GCTCTTGTTCGATTGGCGTC 59.905 55.000 0.00 0.00 41.80 5.19
1227 1266 1.322538 GGCGCAGATGGACCCATTTT 61.323 55.000 10.83 0.00 36.70 1.82
1228 1267 1.388547 GCGCAGATGGACCCATTTTA 58.611 50.000 0.30 0.00 36.70 1.52
1229 1268 1.334869 GCGCAGATGGACCCATTTTAG 59.665 52.381 0.30 0.00 36.70 1.85
1230 1269 2.643551 CGCAGATGGACCCATTTTAGT 58.356 47.619 2.68 0.00 36.70 2.24
1231 1270 2.355756 CGCAGATGGACCCATTTTAGTG 59.644 50.000 2.68 0.00 36.70 2.74
1232 1271 3.620488 GCAGATGGACCCATTTTAGTGA 58.380 45.455 2.68 0.00 36.70 3.41
1233 1272 3.629398 GCAGATGGACCCATTTTAGTGAG 59.371 47.826 2.68 0.00 36.70 3.51
1234 1273 4.626287 GCAGATGGACCCATTTTAGTGAGA 60.626 45.833 2.68 0.00 36.70 3.27
1235 1274 5.688807 CAGATGGACCCATTTTAGTGAGAT 58.311 41.667 2.68 0.00 36.70 2.75
1236 1275 5.530171 CAGATGGACCCATTTTAGTGAGATG 59.470 44.000 2.68 0.00 36.70 2.90
1411 1451 0.179169 GACGACTACCTCCTCAACGC 60.179 60.000 0.00 0.00 0.00 4.84
1415 1455 3.072468 TACCTCCTCAACGCCGGG 61.072 66.667 2.18 0.00 0.00 5.73
1497 1549 3.461773 CGGGGCTCATGTCGGACT 61.462 66.667 9.88 0.00 0.00 3.85
1592 1644 1.754621 TAGCGTCCTGGAGCTGGAG 60.755 63.158 22.68 3.78 44.32 3.86
1761 1819 1.814586 GTGCAGCAGCTCAGCTAGG 60.815 63.158 0.00 0.00 44.54 3.02
1863 1934 0.941542 TGCCTGTTTCGTGTTGCTAC 59.058 50.000 0.00 0.00 0.00 3.58
1864 1935 1.226746 GCCTGTTTCGTGTTGCTACT 58.773 50.000 0.00 0.00 0.00 2.57
1865 1936 1.602377 GCCTGTTTCGTGTTGCTACTT 59.398 47.619 0.00 0.00 0.00 2.24
1866 1937 2.602217 GCCTGTTTCGTGTTGCTACTTG 60.602 50.000 0.00 0.00 0.00 3.16
1867 1938 2.602217 CCTGTTTCGTGTTGCTACTTGC 60.602 50.000 0.00 0.00 43.25 4.01
1868 1939 2.285083 TGTTTCGTGTTGCTACTTGCT 58.715 42.857 0.00 0.00 43.37 3.91
1869 1940 3.459145 TGTTTCGTGTTGCTACTTGCTA 58.541 40.909 0.00 0.00 43.37 3.49
1875 1946 0.721718 GTTGCTACTTGCTACAGGCG 59.278 55.000 0.00 0.00 44.64 5.52
1878 1949 1.207089 TGCTACTTGCTACAGGCGAAT 59.793 47.619 0.00 0.00 45.43 3.34
1920 1995 3.499737 CTGCCATGGTCGGTTCGC 61.500 66.667 14.67 0.00 0.00 4.70
1990 2065 2.032636 GTGGTTGAATTTTGCAGCTTGC 60.033 45.455 0.00 1.70 45.29 4.01
2006 2081 3.044305 GCCTCGTGTGGTGCACTC 61.044 66.667 17.98 10.93 45.57 3.51
2104 2188 2.622064 ATTCTTCTGCCCATCGGTAC 57.378 50.000 0.00 0.00 0.00 3.34
2146 2230 2.074547 TCGATCGTTCCAACTGGTTC 57.925 50.000 15.94 0.00 36.34 3.62
2180 2264 6.638873 CCGCAATGTTTTGTCTTAATAACACA 59.361 34.615 0.00 0.00 33.77 3.72
2181 2265 7.358023 CCGCAATGTTTTGTCTTAATAACACAC 60.358 37.037 0.00 0.00 33.77 3.82
2186 2270 3.688694 TGTCTTAATAACACACGGCCT 57.311 42.857 0.00 0.00 0.00 5.19
2295 2380 1.340893 TGATTCCACGTGCATCCCATT 60.341 47.619 10.91 0.00 0.00 3.16
2357 2442 1.198637 GCTTCAGTGCTCACAATCACC 59.801 52.381 2.63 0.00 33.90 4.02
2460 2547 2.401583 TTTACCGAGTCATGCATGCT 57.598 45.000 22.25 20.55 0.00 3.79
2479 2566 6.476706 GCATGCTTGGTTATAGATGGTTTTTC 59.523 38.462 11.37 0.00 0.00 2.29
2488 2575 8.268605 GGTTATAGATGGTTTTTCTCTTCTCCT 58.731 37.037 0.00 0.00 0.00 3.69
2523 2610 4.651778 TGAGGTGTTGATTTCTAACCTGG 58.348 43.478 0.00 0.00 41.33 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.163468 ACACTCCGTCGATCTACTTAGAGTA 60.163 44.000 11.60 0.00 35.50 2.59
3 4 4.025563 CACACTCCGTCGATCTACTTAGAG 60.026 50.000 0.00 2.48 35.50 2.43
4 5 3.869832 CACACTCCGTCGATCTACTTAGA 59.130 47.826 0.00 0.00 36.65 2.10
6 7 3.603532 ACACACTCCGTCGATCTACTTA 58.396 45.455 0.00 0.00 0.00 2.24
9 10 2.286301 GCTACACACTCCGTCGATCTAC 60.286 54.545 0.00 0.00 0.00 2.59
10 11 1.938577 GCTACACACTCCGTCGATCTA 59.061 52.381 0.00 0.00 0.00 1.98
11 12 0.733729 GCTACACACTCCGTCGATCT 59.266 55.000 0.00 0.00 0.00 2.75
12 13 0.450583 TGCTACACACTCCGTCGATC 59.549 55.000 0.00 0.00 0.00 3.69
13 14 0.885879 TTGCTACACACTCCGTCGAT 59.114 50.000 0.00 0.00 0.00 3.59
14 15 0.669619 TTTGCTACACACTCCGTCGA 59.330 50.000 0.00 0.00 0.00 4.20
15 16 1.060713 CTTTGCTACACACTCCGTCG 58.939 55.000 0.00 0.00 0.00 5.12
16 17 0.790814 GCTTTGCTACACACTCCGTC 59.209 55.000 0.00 0.00 0.00 4.79
17 18 0.105964 TGCTTTGCTACACACTCCGT 59.894 50.000 0.00 0.00 0.00 4.69
18 19 1.225855 TTGCTTTGCTACACACTCCG 58.774 50.000 0.00 0.00 0.00 4.63
19 20 3.708563 TTTTGCTTTGCTACACACTCC 57.291 42.857 0.00 0.00 0.00 3.85
20 21 4.920376 TCTTTTTGCTTTGCTACACACTC 58.080 39.130 0.00 0.00 0.00 3.51
21 22 4.981806 TCTTTTTGCTTTGCTACACACT 57.018 36.364 0.00 0.00 0.00 3.55
22 23 6.401955 TTTTCTTTTTGCTTTGCTACACAC 57.598 33.333 0.00 0.00 0.00 3.82
61 62 0.370273 CATTCGTACGTTGCCTGCTC 59.630 55.000 16.05 0.00 0.00 4.26
66 67 1.730064 ACATGTCATTCGTACGTTGCC 59.270 47.619 16.05 5.18 0.00 4.52
67 68 2.222729 GGACATGTCATTCGTACGTTGC 60.223 50.000 26.47 10.64 0.00 4.17
68 69 2.347452 GGGACATGTCATTCGTACGTTG 59.653 50.000 26.47 14.03 0.00 4.10
69 70 2.613691 GGGACATGTCATTCGTACGTT 58.386 47.619 26.47 1.09 0.00 3.99
182 186 1.124780 TGAACCAAGACGAGGGACAA 58.875 50.000 0.00 0.00 0.00 3.18
296 314 2.355956 GCGCGCTGTATACTCCCC 60.356 66.667 26.67 0.00 0.00 4.81
826 850 2.100216 CGGTGGCGTATGCTTTGC 59.900 61.111 6.92 0.00 42.25 3.68
904 928 2.753043 CTGCTGCCACCATGGGAC 60.753 66.667 18.09 5.28 38.19 4.46
938 962 0.027586 GAAGCGTTGTGTTGAAGCGT 59.972 50.000 0.00 0.00 0.00 5.07
939 963 0.657368 GGAAGCGTTGTGTTGAAGCG 60.657 55.000 0.00 0.00 0.00 4.68
940 964 0.657368 CGGAAGCGTTGTGTTGAAGC 60.657 55.000 0.00 0.00 0.00 3.86
982 1006 2.370349 CATCGACCCTCACTAGTCACT 58.630 52.381 0.00 0.00 33.08 3.41
983 1007 1.405821 CCATCGACCCTCACTAGTCAC 59.594 57.143 0.00 0.00 33.08 3.67
984 1008 1.763968 CCATCGACCCTCACTAGTCA 58.236 55.000 0.00 0.00 33.08 3.41
985 1009 0.386113 GCCATCGACCCTCACTAGTC 59.614 60.000 0.00 0.00 0.00 2.59
986 1010 1.384989 CGCCATCGACCCTCACTAGT 61.385 60.000 0.00 0.00 38.10 2.57
987 1011 1.101635 TCGCCATCGACCCTCACTAG 61.102 60.000 0.00 0.00 40.21 2.57
988 1012 1.077285 TCGCCATCGACCCTCACTA 60.077 57.895 0.00 0.00 40.21 2.74
1173 1204 1.045911 AGAGCTACCACTAGCCTGGC 61.046 60.000 11.65 11.65 46.01 4.85
1184 1215 1.666189 GCCAATCGAACAAGAGCTACC 59.334 52.381 0.00 0.00 0.00 3.18
1193 1224 3.115892 GCCGACGCCAATCGAACA 61.116 61.111 0.00 0.00 45.13 3.18
1207 1246 4.552365 ATGGGTCCATCTGCGCCG 62.552 66.667 4.18 0.00 29.42 6.46
1216 1255 3.010027 TGCATCTCACTAAAATGGGTCCA 59.990 43.478 0.00 0.00 0.00 4.02
1221 1260 5.345702 CAACCATGCATCTCACTAAAATGG 58.654 41.667 0.00 0.00 39.20 3.16
1248 1287 2.094539 CATCTGCACGCACGAACG 59.905 61.111 0.00 0.00 39.50 3.95
1249 1288 2.027073 TCCATCTGCACGCACGAAC 61.027 57.895 0.00 0.00 0.00 3.95
1250 1289 2.027073 GTCCATCTGCACGCACGAA 61.027 57.895 0.00 0.00 0.00 3.85
1415 1455 3.408851 GGTTCGTTGTCCGTCGGC 61.409 66.667 6.34 2.31 37.94 5.54
1418 1458 2.735857 CGGGGTTCGTTGTCCGTC 60.736 66.667 0.00 0.00 37.92 4.79
1574 1626 1.754621 CTCCAGCTCCAGGACGCTA 60.755 63.158 11.74 0.00 34.58 4.26
1674 1726 2.291043 GGAGCTCCTCCCGGTTGAA 61.291 63.158 26.25 0.00 44.36 2.69
1789 1855 3.605664 GTTTTGCTGCCCTGGCGT 61.606 61.111 3.32 0.00 45.51 5.68
1790 1856 4.705519 CGTTTTGCTGCCCTGGCG 62.706 66.667 3.32 0.00 45.51 5.69
1791 1857 4.362476 CCGTTTTGCTGCCCTGGC 62.362 66.667 0.00 0.00 42.35 4.85
1863 1934 0.654683 GCAGATTCGCCTGTAGCAAG 59.345 55.000 0.00 0.00 44.04 4.01
1864 1935 1.083806 CGCAGATTCGCCTGTAGCAA 61.084 55.000 0.00 0.00 44.04 3.91
1865 1936 1.519234 CGCAGATTCGCCTGTAGCA 60.519 57.895 0.00 0.00 44.04 3.49
1866 1937 0.248907 TACGCAGATTCGCCTGTAGC 60.249 55.000 0.00 0.00 36.57 3.58
1867 1938 1.478137 GTACGCAGATTCGCCTGTAG 58.522 55.000 0.00 0.00 36.57 2.74
1868 1939 0.248336 CGTACGCAGATTCGCCTGTA 60.248 55.000 0.52 0.00 36.57 2.74
1869 1940 1.516386 CGTACGCAGATTCGCCTGT 60.516 57.895 0.52 0.00 36.57 4.00
2084 2165 2.505819 AGTACCGATGGGCAGAAGAATT 59.494 45.455 0.00 0.00 36.48 2.17
2085 2166 2.119495 AGTACCGATGGGCAGAAGAAT 58.881 47.619 0.00 0.00 36.48 2.40
2086 2167 1.568504 AGTACCGATGGGCAGAAGAA 58.431 50.000 0.00 0.00 36.48 2.52
2087 2168 1.480954 GAAGTACCGATGGGCAGAAGA 59.519 52.381 0.00 0.00 36.48 2.87
2088 2169 1.207089 TGAAGTACCGATGGGCAGAAG 59.793 52.381 0.00 0.00 36.48 2.85
2104 2188 1.888215 TTGCTCAGCCTGTTCTGAAG 58.112 50.000 0.00 0.00 41.99 3.02
2180 2264 3.681593 TGCTAGTTGAAATTAAGGCCGT 58.318 40.909 0.00 0.00 0.00 5.68
2181 2265 4.695217 TTGCTAGTTGAAATTAAGGCCG 57.305 40.909 0.00 0.00 0.00 6.13
2241 2326 7.333528 TCAGTCATGATTATTTTGTTAGGGC 57.666 36.000 0.00 0.00 0.00 5.19
2277 2362 1.851304 AAATGGGATGCACGTGGAAT 58.149 45.000 15.51 0.00 0.00 3.01
2295 2380 7.110155 GGGAAGAAGGATAAGTGACAACATAA 58.890 38.462 0.00 0.00 0.00 1.90
2357 2442 4.584029 ATTCGTAACATTCAAGCGAGTG 57.416 40.909 0.00 0.00 35.12 3.51
2434 2521 2.354805 GCATGACTCGGTAAAACCTCCT 60.355 50.000 0.00 0.00 35.66 3.69
2460 2547 9.449719 GAGAAGAGAAAAACCATCTATAACCAA 57.550 33.333 0.00 0.00 0.00 3.67
2479 2566 8.940952 CCTCAACAAAATTAGTTAGGAGAAGAG 58.059 37.037 10.27 0.00 0.00 2.85
2523 2610 5.766222 TCTTTCTTTCGTACCAGTGTAGAC 58.234 41.667 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.