Multiple sequence alignment - TraesCS2B01G494400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G494400 chr2B 100.000 3632 0 0 1 3632 691452041 691455672 0.000000e+00 6708.0
1 TraesCS2B01G494400 chr2B 95.053 283 12 2 3179 3460 104826259 104826540 9.250000e-121 444.0
2 TraesCS2B01G494400 chr2A 93.275 1933 95 7 1 1921 713542709 713544618 0.000000e+00 2817.0
3 TraesCS2B01G494400 chr2A 93.686 1362 63 11 1842 3196 713544704 713546049 0.000000e+00 2017.0
4 TraesCS2B01G494400 chr2A 96.043 278 10 1 3183 3460 745588271 745588547 5.530000e-123 451.0
5 TraesCS2B01G494400 chr2A 92.500 80 5 1 1842 1921 713544622 713544700 2.960000e-21 113.0
6 TraesCS2B01G494400 chr2A 80.189 106 14 5 2385 2490 425831545 425831643 5.030000e-09 73.1
7 TraesCS2B01G494400 chr2D 92.379 1929 114 10 1 1921 575358459 575360362 0.000000e+00 2717.0
8 TraesCS2B01G494400 chr2D 94.631 1341 56 4 1842 3182 575360366 575361690 0.000000e+00 2063.0
9 TraesCS2B01G494400 chr2D 76.254 598 70 37 1023 1590 140713134 140713689 6.020000e-63 252.0
10 TraesCS2B01G494400 chr2D 79.762 336 56 10 2385 2719 439657372 439657048 2.180000e-57 233.0
11 TraesCS2B01G494400 chr6D 86.985 922 100 10 1 902 472305573 472306494 0.000000e+00 1020.0
12 TraesCS2B01G494400 chr6D 85.714 560 57 9 2379 2927 472307539 472308086 1.460000e-158 569.0
13 TraesCS2B01G494400 chr6D 79.417 515 56 23 985 1493 472306598 472307068 5.850000e-83 318.0
14 TraesCS2B01G494400 chr6D 100.000 28 0 0 2684 2711 472312206 472312233 7.000000e-03 52.8
15 TraesCS2B01G494400 chr6A 86.990 907 100 8 4 902 617687100 617686204 0.000000e+00 1005.0
16 TraesCS2B01G494400 chr6A 83.272 813 103 20 2379 3181 617683431 617682642 0.000000e+00 717.0
17 TraesCS2B01G494400 chr6B 86.143 866 102 9 1 860 716975895 716976748 0.000000e+00 918.0
18 TraesCS2B01G494400 chr6B 88.532 218 18 5 2385 2600 716885679 716885467 1.290000e-64 257.0
19 TraesCS2B01G494400 chr6B 85.321 218 27 2 2758 2970 716821266 716821049 1.700000e-53 220.0
20 TraesCS2B01G494400 chr6B 82.819 227 27 6 2533 2756 716855577 716855360 3.700000e-45 193.0
21 TraesCS2B01G494400 chr4A 95.760 283 10 2 3178 3460 702170669 702170389 4.280000e-124 455.0
22 TraesCS2B01G494400 chr5B 96.057 279 10 1 3182 3460 643130258 643129981 1.540000e-123 453.0
23 TraesCS2B01G494400 chr5B 90.244 205 20 0 3392 3596 826114 826318 5.980000e-68 268.0
24 TraesCS2B01G494400 chr4B 95.683 278 11 1 3183 3460 285606196 285605920 2.570000e-121 446.0
25 TraesCS2B01G494400 chrUn 94.483 290 13 3 3172 3460 7911037 7910750 9.250000e-121 444.0
26 TraesCS2B01G494400 chrUn 83.113 302 27 13 1019 1316 96713525 96713244 1.670000e-63 254.0
27 TraesCS2B01G494400 chr1B 94.483 290 13 3 3172 3460 638142818 638142531 9.250000e-121 444.0
28 TraesCS2B01G494400 chr1B 94.483 290 13 3 3172 3460 638235993 638235706 9.250000e-121 444.0
29 TraesCS2B01G494400 chr1B 94.138 290 14 3 3172 3460 638325904 638325617 4.310000e-119 438.0
30 TraesCS2B01G494400 chr7D 85.324 293 28 9 1023 1307 24431928 24431643 4.590000e-74 289.0
31 TraesCS2B01G494400 chr7D 82.012 328 35 14 1019 1342 73007472 73007779 1.290000e-64 257.0
32 TraesCS2B01G494400 chr7D 81.040 327 37 16 1019 1341 190196219 190196524 1.690000e-58 237.0
33 TraesCS2B01G494400 chr1D 76.539 601 67 39 1023 1590 432955660 432956219 1.000000e-65 261.0
34 TraesCS2B01G494400 chr5D 81.873 331 32 18 1019 1342 149768670 149768361 1.670000e-63 254.0
35 TraesCS2B01G494400 chr4D 81.402 328 37 14 1019 1342 21035087 21034780 2.800000e-61 246.0
36 TraesCS2B01G494400 chr7B 80.189 106 14 5 2385 2490 104516237 104516335 5.030000e-09 73.1
37 TraesCS2B01G494400 chr1A 80.189 106 14 5 2385 2490 244553388 244553290 5.030000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G494400 chr2B 691452041 691455672 3631 False 6708.000000 6708 100.000000 1 3632 1 chr2B.!!$F2 3631
1 TraesCS2B01G494400 chr2A 713542709 713546049 3340 False 1649.000000 2817 93.153667 1 3196 3 chr2A.!!$F3 3195
2 TraesCS2B01G494400 chr2D 575358459 575361690 3231 False 2390.000000 2717 93.505000 1 3182 2 chr2D.!!$F2 3181
3 TraesCS2B01G494400 chr2D 140713134 140713689 555 False 252.000000 252 76.254000 1023 1590 1 chr2D.!!$F1 567
4 TraesCS2B01G494400 chr6D 472305573 472308086 2513 False 635.666667 1020 84.038667 1 2927 3 chr6D.!!$F2 2926
5 TraesCS2B01G494400 chr6A 617682642 617687100 4458 True 861.000000 1005 85.131000 4 3181 2 chr6A.!!$R1 3177
6 TraesCS2B01G494400 chr6B 716975895 716976748 853 False 918.000000 918 86.143000 1 860 1 chr6B.!!$F1 859
7 TraesCS2B01G494400 chr1D 432955660 432956219 559 False 261.000000 261 76.539000 1023 1590 1 chr1D.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 773 0.108233 GAGACTCTGAGCTTGCTGGG 60.108 60.0 4.19 0.0 0.0 4.45 F
1628 2778 0.034198 TGTTTTCGCCCATCTGTCGA 59.966 50.0 0.00 0.0 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2550 4330 0.038251 TCATCGTCGCCATAGCCATC 60.038 55.0 0.00 0.00 34.57 3.51 R
3465 5256 0.033894 TAACGGGAAAAGATGGGCCC 60.034 55.0 17.59 17.59 37.21 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.289109 CTCGAATTGCGGACGTGGTT 61.289 55.000 0.00 0.00 41.33 3.67
85 86 4.309950 GACGTGGTTGCCGAGGGT 62.310 66.667 0.00 0.00 0.00 4.34
151 152 1.251527 AACTCAGGCGTGACGAGGAT 61.252 55.000 10.10 0.00 0.00 3.24
229 230 4.421479 CCGCACGAGGACGAAGCT 62.421 66.667 0.00 0.00 42.66 3.74
677 678 2.283821 GGCCCCAGATTTGCCACA 60.284 61.111 0.00 0.00 44.70 4.17
761 771 0.458197 CGGAGACTCTGAGCTTGCTG 60.458 60.000 5.24 0.00 0.00 4.41
763 773 0.108233 GAGACTCTGAGCTTGCTGGG 60.108 60.000 4.19 0.00 0.00 4.45
766 776 0.913451 ACTCTGAGCTTGCTGGGGAT 60.913 55.000 4.19 0.00 0.00 3.85
997 1067 1.303317 AATCTCCACCACCAACCGC 60.303 57.895 0.00 0.00 0.00 5.68
1015 1085 2.356194 CGATGGCGATGGCGATGA 60.356 61.111 1.13 0.00 37.76 2.92
1155 1266 2.200067 CTGATCCAGTCAATCGAGTGC 58.800 52.381 8.24 3.56 40.69 4.40
1347 1476 4.336433 CGGCAAGAAAGGTACATCATTCAT 59.664 41.667 0.00 0.00 0.00 2.57
1352 1481 9.056005 GCAAGAAAGGTACATCATTCATACATA 57.944 33.333 0.00 0.00 0.00 2.29
1358 1487 9.494271 AAGGTACATCATTCATACATACATCAC 57.506 33.333 0.00 0.00 0.00 3.06
1373 1505 2.025887 ACATCACCCCCTTTCTAGCTTG 60.026 50.000 0.00 0.00 0.00 4.01
1374 1506 2.038863 TCACCCCCTTTCTAGCTTGA 57.961 50.000 0.00 0.00 0.00 3.02
1375 1507 1.909302 TCACCCCCTTTCTAGCTTGAG 59.091 52.381 0.00 0.00 0.00 3.02
1376 1508 1.909302 CACCCCCTTTCTAGCTTGAGA 59.091 52.381 0.00 0.00 0.00 3.27
1483 2495 1.197721 CGGAAGGTGCTGACAATTGAC 59.802 52.381 13.59 6.72 0.00 3.18
1488 2564 2.880890 AGGTGCTGACAATTGACAAGAC 59.119 45.455 13.59 10.78 0.00 3.01
1535 2644 3.909776 TCAGACTTTCAATTGCTGCTG 57.090 42.857 0.00 4.24 0.00 4.41
1628 2778 0.034198 TGTTTTCGCCCATCTGTCGA 59.966 50.000 0.00 0.00 0.00 4.20
1631 2781 0.527600 TTTCGCCCATCTGTCGATCG 60.528 55.000 9.36 9.36 31.96 3.69
1682 2841 5.350504 AGATAAACTGCACAGCTCTGTAT 57.649 39.130 1.79 0.00 42.83 2.29
1755 2931 3.451178 AGCCGTTTCCTGTCAGTATACAT 59.549 43.478 5.50 0.00 0.00 2.29
1765 2941 7.690256 TCCTGTCAGTATACATCTATGCTCTA 58.310 38.462 5.50 0.00 0.00 2.43
1796 3025 6.827586 TCCCTTGTAAATTCCACATGTTAC 57.172 37.500 0.00 0.00 0.00 2.50
1797 3026 6.307776 TCCCTTGTAAATTCCACATGTTACA 58.692 36.000 0.00 0.00 35.28 2.41
1855 3084 2.333581 GTTGGCGGTTTGGGTTCG 59.666 61.111 0.00 0.00 0.00 3.95
1921 3235 3.469008 TTACCTCCAAGCGACATATGG 57.531 47.619 7.80 0.00 35.49 2.74
1924 3238 0.940126 CTCCAAGCGACATATGGCAC 59.060 55.000 9.77 0.00 34.13 5.01
1925 3239 0.463654 TCCAAGCGACATATGGCACC 60.464 55.000 9.77 0.00 34.13 5.01
1928 3242 3.649986 GCGACATATGGCACCCGC 61.650 66.667 9.77 10.49 35.91 6.13
1978 3365 8.709308 GCCATCTCCACAATCCTATAGTTATAT 58.291 37.037 0.00 0.00 0.00 0.86
2007 3394 2.450160 GACAAGTCGCAGTTTTTGGTG 58.550 47.619 0.00 0.00 0.00 4.17
2011 3398 3.626028 AGTCGCAGTTTTTGGTGAATC 57.374 42.857 0.00 0.00 0.00 2.52
2019 3406 7.655328 TCGCAGTTTTTGGTGAATCATTTTATT 59.345 29.630 0.00 0.00 0.00 1.40
2088 3558 5.527214 GCTTTGCAGTTCCCTGTTAAATTTT 59.473 36.000 0.00 0.00 41.02 1.82
2368 4142 4.504097 GCTTGTGATGCGAAAGAAAGTTTT 59.496 37.500 0.00 0.00 0.00 2.43
2405 4179 9.296400 GTTTATCTGAAGATCTGTACTCTGAAC 57.704 37.037 0.00 0.00 36.05 3.18
2411 4185 4.877773 AGATCTGTACTCTGAACCCTCAT 58.122 43.478 0.00 0.00 0.00 2.90
2550 4330 2.874701 CTCCAAGAAATGCCCGTATGAG 59.125 50.000 0.00 0.00 0.00 2.90
2756 4537 4.141181 TGTTTTGGGCAGCCATAGAGATAT 60.141 41.667 15.19 0.00 0.00 1.63
2806 4587 8.058235 AGCATATAGTATCAGATCTTCTGCCTA 58.942 37.037 0.00 1.59 43.95 3.93
2906 4693 5.373222 TCATGGTATCCGTCTAATTTTGGG 58.627 41.667 0.00 0.00 0.00 4.12
3032 4820 7.067494 AGCCAAGTTGGAGATACAATGATAAAC 59.933 37.037 26.52 1.17 40.96 2.01
3183 4971 7.457024 CATATGATGCCACCAAGAAATATGA 57.543 36.000 0.00 0.00 0.00 2.15
3215 5006 8.722342 TTCAAAACTATCACGTTATTTGAAGC 57.278 30.769 7.23 0.00 32.76 3.86
3216 5007 7.866729 TCAAAACTATCACGTTATTTGAAGCA 58.133 30.769 0.00 0.00 0.00 3.91
3217 5008 8.346300 TCAAAACTATCACGTTATTTGAAGCAA 58.654 29.630 0.00 0.00 0.00 3.91
3218 5009 8.963130 CAAAACTATCACGTTATTTGAAGCAAA 58.037 29.630 0.00 0.00 37.75 3.68
3219 5010 9.691362 AAAACTATCACGTTATTTGAAGCAAAT 57.309 25.926 9.93 9.93 44.74 2.32
3220 5011 9.691362 AAACTATCACGTTATTTGAAGCAAATT 57.309 25.926 10.26 0.00 40.60 1.82
3221 5012 8.895932 ACTATCACGTTATTTGAAGCAAATTC 57.104 30.769 10.26 4.81 40.60 2.17
3222 5013 6.853279 ATCACGTTATTTGAAGCAAATTCG 57.147 33.333 10.26 15.44 40.60 3.34
3223 5014 5.150683 TCACGTTATTTGAAGCAAATTCGG 58.849 37.500 21.37 15.17 40.60 4.30
3224 5015 5.049336 TCACGTTATTTGAAGCAAATTCGGA 60.049 36.000 21.37 16.30 40.60 4.55
3225 5016 5.627367 CACGTTATTTGAAGCAAATTCGGAA 59.373 36.000 21.37 0.00 40.60 4.30
3226 5017 6.143118 CACGTTATTTGAAGCAAATTCGGAAA 59.857 34.615 21.37 7.51 40.60 3.13
3227 5018 6.143278 ACGTTATTTGAAGCAAATTCGGAAAC 59.857 34.615 21.37 14.41 40.60 2.78
3228 5019 6.362283 CGTTATTTGAAGCAAATTCGGAAACT 59.638 34.615 10.26 0.00 40.60 2.66
3229 5020 7.535940 CGTTATTTGAAGCAAATTCGGAAACTA 59.464 33.333 10.26 0.00 40.60 2.24
3230 5021 8.635983 GTTATTTGAAGCAAATTCGGAAACTAC 58.364 33.333 10.26 0.00 40.60 2.73
3231 5022 5.759506 TTGAAGCAAATTCGGAAACTACA 57.240 34.783 0.00 0.00 41.14 2.74
3232 5023 5.356882 TGAAGCAAATTCGGAAACTACAG 57.643 39.130 0.00 0.00 41.14 2.74
3233 5024 3.831715 AGCAAATTCGGAAACTACAGC 57.168 42.857 0.00 0.00 0.00 4.40
3234 5025 3.146066 AGCAAATTCGGAAACTACAGCA 58.854 40.909 0.00 0.00 0.00 4.41
3235 5026 3.758554 AGCAAATTCGGAAACTACAGCAT 59.241 39.130 0.00 0.00 0.00 3.79
3236 5027 3.853671 GCAAATTCGGAAACTACAGCATG 59.146 43.478 0.00 0.00 46.00 4.06
3254 5045 6.270815 CAGCATGTTTTGGAGAAATATCAGG 58.729 40.000 0.00 0.00 0.00 3.86
3255 5046 5.954150 AGCATGTTTTGGAGAAATATCAGGT 59.046 36.000 0.00 0.00 0.00 4.00
3256 5047 6.096001 AGCATGTTTTGGAGAAATATCAGGTC 59.904 38.462 0.00 0.00 0.00 3.85
3257 5048 6.096001 GCATGTTTTGGAGAAATATCAGGTCT 59.904 38.462 0.00 0.00 0.00 3.85
3258 5049 7.283127 GCATGTTTTGGAGAAATATCAGGTCTA 59.717 37.037 0.00 0.00 0.00 2.59
3259 5050 8.834465 CATGTTTTGGAGAAATATCAGGTCTAG 58.166 37.037 0.00 0.00 0.00 2.43
3260 5051 6.823689 TGTTTTGGAGAAATATCAGGTCTAGC 59.176 38.462 0.00 0.00 0.00 3.42
3261 5052 6.560003 TTTGGAGAAATATCAGGTCTAGCA 57.440 37.500 0.00 0.00 0.00 3.49
3262 5053 5.537300 TGGAGAAATATCAGGTCTAGCAC 57.463 43.478 0.00 0.00 0.00 4.40
3270 5061 3.834799 GGTCTAGCACCCCGTCGG 61.835 72.222 3.60 3.60 39.69 4.79
3271 5062 4.509737 GTCTAGCACCCCGTCGGC 62.510 72.222 5.50 0.00 33.26 5.54
3288 5079 4.484987 CCAGGTGTTGGCCGTAAA 57.515 55.556 0.00 0.00 40.87 2.01
3289 5080 2.253513 CCAGGTGTTGGCCGTAAAG 58.746 57.895 0.00 0.00 40.87 1.85
3290 5081 1.241315 CCAGGTGTTGGCCGTAAAGG 61.241 60.000 0.00 0.00 40.87 3.11
3291 5082 1.074248 AGGTGTTGGCCGTAAAGGG 59.926 57.895 0.00 0.00 41.48 3.95
3292 5083 1.228337 GGTGTTGGCCGTAAAGGGT 60.228 57.895 0.00 0.00 41.48 4.34
3293 5084 1.520600 GGTGTTGGCCGTAAAGGGTG 61.521 60.000 0.00 0.00 41.48 4.61
3294 5085 0.820482 GTGTTGGCCGTAAAGGGTGT 60.820 55.000 0.00 0.00 41.48 4.16
3295 5086 0.106619 TGTTGGCCGTAAAGGGTGTT 60.107 50.000 0.00 0.00 41.48 3.32
3296 5087 1.034356 GTTGGCCGTAAAGGGTGTTT 58.966 50.000 0.00 0.00 41.48 2.83
3297 5088 1.409790 GTTGGCCGTAAAGGGTGTTTT 59.590 47.619 0.00 0.00 41.48 2.43
3298 5089 1.320507 TGGCCGTAAAGGGTGTTTTC 58.679 50.000 0.00 0.00 41.48 2.29
3299 5090 0.239082 GGCCGTAAAGGGTGTTTTCG 59.761 55.000 0.00 0.00 41.48 3.46
3300 5091 0.239082 GCCGTAAAGGGTGTTTTCGG 59.761 55.000 10.21 10.21 41.48 4.30
3301 5092 0.239082 CCGTAAAGGGTGTTTTCGGC 59.761 55.000 3.14 0.00 35.97 5.54
3302 5093 0.239082 CGTAAAGGGTGTTTTCGGCC 59.761 55.000 0.00 0.00 0.00 6.13
3303 5094 1.320507 GTAAAGGGTGTTTTCGGCCA 58.679 50.000 2.24 0.00 0.00 5.36
3304 5095 1.001048 GTAAAGGGTGTTTTCGGCCAC 60.001 52.381 2.24 0.00 0.00 5.01
3307 5098 3.351450 GGTGTTTTCGGCCACCTC 58.649 61.111 2.24 0.00 46.17 3.85
3308 5099 1.228154 GGTGTTTTCGGCCACCTCT 60.228 57.895 2.24 0.00 46.17 3.69
3309 5100 0.035739 GGTGTTTTCGGCCACCTCTA 59.964 55.000 2.24 0.00 46.17 2.43
3310 5101 1.439679 GTGTTTTCGGCCACCTCTAG 58.560 55.000 2.24 0.00 0.00 2.43
3311 5102 0.323629 TGTTTTCGGCCACCTCTAGG 59.676 55.000 2.24 0.00 42.17 3.02
3317 5108 2.987125 GCCACCTCTAGGCCGAAA 59.013 61.111 0.00 0.00 46.50 3.46
3318 5109 1.527370 GCCACCTCTAGGCCGAAAT 59.473 57.895 0.00 0.00 46.50 2.17
3319 5110 0.756903 GCCACCTCTAGGCCGAAATA 59.243 55.000 0.00 0.00 46.50 1.40
3320 5111 1.270358 GCCACCTCTAGGCCGAAATAG 60.270 57.143 0.00 0.00 46.50 1.73
3321 5112 1.344763 CCACCTCTAGGCCGAAATAGG 59.655 57.143 0.00 4.02 39.32 2.57
3322 5113 1.344763 CACCTCTAGGCCGAAATAGGG 59.655 57.143 14.51 4.07 39.32 3.53
3323 5114 1.062352 ACCTCTAGGCCGAAATAGGGT 60.062 52.381 14.51 9.59 39.32 4.34
3324 5115 2.047830 CCTCTAGGCCGAAATAGGGTT 58.952 52.381 0.00 0.00 0.00 4.11
3325 5116 2.438392 CCTCTAGGCCGAAATAGGGTTT 59.562 50.000 0.00 0.00 0.00 3.27
3326 5117 3.118000 CCTCTAGGCCGAAATAGGGTTTT 60.118 47.826 0.00 0.00 0.00 2.43
3327 5118 4.127907 CTCTAGGCCGAAATAGGGTTTTC 58.872 47.826 0.00 0.00 33.24 2.29
3334 5125 3.503827 GAAATAGGGTTTTCGGCCTTG 57.496 47.619 0.00 0.00 0.00 3.61
3335 5126 1.182667 AATAGGGTTTTCGGCCTTGC 58.817 50.000 0.00 0.00 0.00 4.01
3336 5127 0.683179 ATAGGGTTTTCGGCCTTGCC 60.683 55.000 0.00 0.00 46.75 4.52
3353 5144 4.653555 CTTTGGCCGAAAAGGTGC 57.346 55.556 6.92 0.00 43.70 5.01
3354 5145 1.739049 CTTTGGCCGAAAAGGTGCA 59.261 52.632 6.92 0.00 43.70 4.57
3355 5146 0.103937 CTTTGGCCGAAAAGGTGCAA 59.896 50.000 6.92 0.00 43.70 4.08
3356 5147 0.537188 TTTGGCCGAAAAGGTGCAAA 59.463 45.000 1.75 0.00 43.70 3.68
3357 5148 0.103937 TTGGCCGAAAAGGTGCAAAG 59.896 50.000 0.00 0.00 43.70 2.77
3358 5149 1.664649 GGCCGAAAAGGTGCAAAGC 60.665 57.895 0.00 0.00 43.70 3.51
3359 5150 1.363807 GCCGAAAAGGTGCAAAGCT 59.636 52.632 0.00 0.00 43.70 3.74
3360 5151 0.940991 GCCGAAAAGGTGCAAAGCTG 60.941 55.000 0.00 0.00 43.70 4.24
3361 5152 0.318955 CCGAAAAGGTGCAAAGCTGG 60.319 55.000 0.00 0.00 34.51 4.85
3362 5153 0.940991 CGAAAAGGTGCAAAGCTGGC 60.941 55.000 3.76 3.76 0.00 4.85
3363 5154 0.601046 GAAAAGGTGCAAAGCTGGCC 60.601 55.000 8.04 0.00 0.00 5.36
3364 5155 2.367868 AAAAGGTGCAAAGCTGGCCG 62.368 55.000 8.04 0.00 0.00 6.13
3365 5156 3.790416 AAGGTGCAAAGCTGGCCGA 62.790 57.895 8.04 0.00 0.00 5.54
3366 5157 3.294493 GGTGCAAAGCTGGCCGAA 61.294 61.111 8.04 0.00 0.00 4.30
3367 5158 2.256461 GTGCAAAGCTGGCCGAAG 59.744 61.111 8.04 0.00 0.00 3.79
3368 5159 2.112928 TGCAAAGCTGGCCGAAGA 59.887 55.556 8.04 0.00 0.00 2.87
3369 5160 1.968017 TGCAAAGCTGGCCGAAGAG 60.968 57.895 8.04 0.00 0.00 2.85
3370 5161 2.694760 GCAAAGCTGGCCGAAGAGG 61.695 63.158 0.00 0.00 44.97 3.69
3371 5162 2.042831 CAAAGCTGGCCGAAGAGGG 61.043 63.158 0.00 0.00 41.48 4.30
3372 5163 3.273788 AAAGCTGGCCGAAGAGGGG 62.274 63.158 0.00 0.00 41.48 4.79
3374 5165 4.785453 GCTGGCCGAAGAGGGGTG 62.785 72.222 0.00 0.00 41.48 4.61
3375 5166 3.322466 CTGGCCGAAGAGGGGTGT 61.322 66.667 0.00 0.00 41.48 4.16
3376 5167 2.852075 TGGCCGAAGAGGGGTGTT 60.852 61.111 0.00 0.00 41.48 3.32
3377 5168 2.411765 CTGGCCGAAGAGGGGTGTTT 62.412 60.000 0.00 0.00 41.48 2.83
3378 5169 1.228459 GGCCGAAGAGGGGTGTTTT 60.228 57.895 0.00 0.00 41.48 2.43
3379 5170 1.241990 GGCCGAAGAGGGGTGTTTTC 61.242 60.000 0.00 0.00 41.48 2.29
3380 5171 1.574702 GCCGAAGAGGGGTGTTTTCG 61.575 60.000 0.00 0.00 41.35 3.46
3381 5172 2.540145 CGAAGAGGGGTGTTTTCGG 58.460 57.895 0.00 0.00 38.87 4.30
3382 5173 1.574702 CGAAGAGGGGTGTTTTCGGC 61.575 60.000 0.00 0.00 38.87 5.54
3383 5174 1.228459 AAGAGGGGTGTTTTCGGCC 60.228 57.895 0.00 0.00 0.00 6.13
3384 5175 2.002018 AAGAGGGGTGTTTTCGGCCA 62.002 55.000 2.24 0.00 0.00 5.36
3385 5176 2.203437 AGGGGTGTTTTCGGCCAC 60.203 61.111 2.24 0.00 0.00 5.01
3388 5179 2.203437 GGTGTTTTCGGCCACCCT 60.203 61.111 2.24 0.00 44.37 4.34
3389 5180 1.830847 GGTGTTTTCGGCCACCCTT 60.831 57.895 2.24 0.00 44.37 3.95
3390 5181 1.396607 GGTGTTTTCGGCCACCCTTT 61.397 55.000 2.24 0.00 44.37 3.11
3391 5182 0.249280 GTGTTTTCGGCCACCCTTTG 60.249 55.000 2.24 0.00 0.00 2.77
3399 5190 3.863606 CCACCCTTTGGCCGAAAA 58.136 55.556 6.92 0.00 39.07 2.29
3400 5191 1.665442 CCACCCTTTGGCCGAAAAG 59.335 57.895 6.92 7.72 39.07 2.27
3432 5223 3.778618 CCTAGTGTAGGCCGAAAAGTAC 58.221 50.000 0.00 0.00 39.48 2.73
3433 5224 3.446516 CCTAGTGTAGGCCGAAAAGTACT 59.553 47.826 0.00 0.00 39.48 2.73
3434 5225 4.081807 CCTAGTGTAGGCCGAAAAGTACTT 60.082 45.833 1.12 1.12 39.48 2.24
3435 5226 4.347360 AGTGTAGGCCGAAAAGTACTTT 57.653 40.909 15.22 15.22 0.00 2.66
3436 5227 4.711399 AGTGTAGGCCGAAAAGTACTTTT 58.289 39.130 29.12 29.12 44.59 2.27
3437 5228 5.128205 AGTGTAGGCCGAAAAGTACTTTTT 58.872 37.500 29.26 17.98 42.26 1.94
3438 5229 5.008316 AGTGTAGGCCGAAAAGTACTTTTTG 59.992 40.000 29.97 29.97 42.26 2.44
3449 5240 9.382244 CGAAAAGTACTTTTTGGTCAAGATTAG 57.618 33.333 29.54 7.06 42.26 1.73
3450 5241 9.678941 GAAAAGTACTTTTTGGTCAAGATTAGG 57.321 33.333 29.26 0.00 42.26 2.69
3451 5242 6.819397 AGTACTTTTTGGTCAAGATTAGGC 57.181 37.500 0.00 0.00 0.00 3.93
3452 5243 5.710567 AGTACTTTTTGGTCAAGATTAGGCC 59.289 40.000 0.00 0.00 0.00 5.19
3453 5244 3.506067 ACTTTTTGGTCAAGATTAGGCCG 59.494 43.478 0.00 0.00 0.00 6.13
3454 5245 3.426787 TTTTGGTCAAGATTAGGCCGA 57.573 42.857 0.00 0.00 0.00 5.54
3455 5246 3.426787 TTTGGTCAAGATTAGGCCGAA 57.573 42.857 0.00 0.00 0.00 4.30
3456 5247 3.426787 TTGGTCAAGATTAGGCCGAAA 57.573 42.857 1.18 0.00 0.00 3.46
3457 5248 3.426787 TGGTCAAGATTAGGCCGAAAA 57.573 42.857 1.18 0.00 0.00 2.29
3458 5249 3.343617 TGGTCAAGATTAGGCCGAAAAG 58.656 45.455 1.18 0.00 0.00 2.27
3459 5250 3.244770 TGGTCAAGATTAGGCCGAAAAGT 60.245 43.478 1.18 0.00 0.00 2.66
3460 5251 3.374367 GGTCAAGATTAGGCCGAAAAGTC 59.626 47.826 1.18 0.00 0.00 3.01
3461 5252 3.374367 GTCAAGATTAGGCCGAAAAGTCC 59.626 47.826 1.18 0.00 0.00 3.85
3462 5253 2.683362 CAAGATTAGGCCGAAAAGTCCC 59.317 50.000 1.18 0.00 0.00 4.46
3463 5254 2.197465 AGATTAGGCCGAAAAGTCCCT 58.803 47.619 1.18 0.00 0.00 4.20
3464 5255 2.576648 AGATTAGGCCGAAAAGTCCCTT 59.423 45.455 1.18 0.00 0.00 3.95
3465 5256 2.194201 TTAGGCCGAAAAGTCCCTTG 57.806 50.000 0.00 0.00 0.00 3.61
3466 5257 0.326927 TAGGCCGAAAAGTCCCTTGG 59.673 55.000 0.00 0.00 0.00 3.61
3467 5258 1.977009 GGCCGAAAAGTCCCTTGGG 60.977 63.158 0.00 0.00 0.00 4.12
3468 5259 2.636412 GCCGAAAAGTCCCTTGGGC 61.636 63.158 0.00 0.00 31.58 5.36
3469 5260 1.977009 CCGAAAAGTCCCTTGGGCC 60.977 63.158 0.00 0.00 0.00 5.80
3470 5261 1.977009 CGAAAAGTCCCTTGGGCCC 60.977 63.158 17.59 17.59 0.00 5.80
3471 5262 1.155155 GAAAAGTCCCTTGGGCCCA 59.845 57.895 24.45 24.45 0.00 5.36
3472 5263 0.252239 GAAAAGTCCCTTGGGCCCAT 60.252 55.000 29.23 6.94 0.00 4.00
3473 5264 0.252239 AAAAGTCCCTTGGGCCCATC 60.252 55.000 29.23 13.83 0.00 3.51
3474 5265 1.149133 AAAGTCCCTTGGGCCCATCT 61.149 55.000 29.23 15.90 0.00 2.90
3475 5266 1.149133 AAGTCCCTTGGGCCCATCTT 61.149 55.000 29.23 20.52 0.00 2.40
3476 5267 1.149133 AGTCCCTTGGGCCCATCTTT 61.149 55.000 29.23 6.76 0.00 2.52
3477 5268 0.252239 GTCCCTTGGGCCCATCTTTT 60.252 55.000 29.23 0.00 0.00 2.27
3478 5269 0.041090 TCCCTTGGGCCCATCTTTTC 59.959 55.000 29.23 0.00 0.00 2.29
3479 5270 0.977627 CCCTTGGGCCCATCTTTTCC 60.978 60.000 29.23 0.00 0.00 3.13
3480 5271 0.977627 CCTTGGGCCCATCTTTTCCC 60.978 60.000 29.23 0.00 39.22 3.97
3481 5272 1.304879 TTGGGCCCATCTTTTCCCG 60.305 57.895 29.23 0.00 41.65 5.14
3482 5273 2.087857 TTGGGCCCATCTTTTCCCGT 62.088 55.000 29.23 0.00 41.65 5.28
3483 5274 1.304962 GGGCCCATCTTTTCCCGTT 60.305 57.895 19.95 0.00 0.00 4.44
3484 5275 0.033894 GGGCCCATCTTTTCCCGTTA 60.034 55.000 19.95 0.00 0.00 3.18
3485 5276 1.617533 GGGCCCATCTTTTCCCGTTAA 60.618 52.381 19.95 0.00 0.00 2.01
3486 5277 2.384828 GGCCCATCTTTTCCCGTTAAT 58.615 47.619 0.00 0.00 0.00 1.40
3487 5278 2.764010 GGCCCATCTTTTCCCGTTAATT 59.236 45.455 0.00 0.00 0.00 1.40
3488 5279 3.430236 GGCCCATCTTTTCCCGTTAATTG 60.430 47.826 0.00 0.00 0.00 2.32
3489 5280 3.194755 GCCCATCTTTTCCCGTTAATTGT 59.805 43.478 0.00 0.00 0.00 2.71
3490 5281 4.322424 GCCCATCTTTTCCCGTTAATTGTT 60.322 41.667 0.00 0.00 0.00 2.83
3491 5282 5.167845 CCCATCTTTTCCCGTTAATTGTTG 58.832 41.667 0.00 0.00 0.00 3.33
3492 5283 5.167845 CCATCTTTTCCCGTTAATTGTTGG 58.832 41.667 0.00 0.00 0.00 3.77
3493 5284 4.245845 TCTTTTCCCGTTAATTGTTGGC 57.754 40.909 0.00 0.00 0.00 4.52
3494 5285 3.006003 TCTTTTCCCGTTAATTGTTGGCC 59.994 43.478 0.00 0.00 0.00 5.36
3495 5286 1.996798 TTCCCGTTAATTGTTGGCCA 58.003 45.000 0.00 0.00 0.00 5.36
3496 5287 1.540267 TCCCGTTAATTGTTGGCCAG 58.460 50.000 5.11 0.00 0.00 4.85
3497 5288 1.202952 TCCCGTTAATTGTTGGCCAGT 60.203 47.619 5.11 0.00 0.00 4.00
3498 5289 1.067915 CCCGTTAATTGTTGGCCAGTG 60.068 52.381 5.11 0.00 0.00 3.66
3499 5290 1.611491 CCGTTAATTGTTGGCCAGTGT 59.389 47.619 5.11 0.00 0.00 3.55
3500 5291 2.814919 CCGTTAATTGTTGGCCAGTGTA 59.185 45.455 5.11 0.00 0.00 2.90
3501 5292 3.442273 CCGTTAATTGTTGGCCAGTGTAT 59.558 43.478 5.11 0.00 0.00 2.29
3502 5293 4.082463 CCGTTAATTGTTGGCCAGTGTATT 60.082 41.667 5.11 7.55 0.00 1.89
3503 5294 5.465935 CGTTAATTGTTGGCCAGTGTATTT 58.534 37.500 5.11 0.00 0.00 1.40
3504 5295 5.923684 CGTTAATTGTTGGCCAGTGTATTTT 59.076 36.000 5.11 0.00 0.00 1.82
3505 5296 6.088883 CGTTAATTGTTGGCCAGTGTATTTTC 59.911 38.462 5.11 1.91 0.00 2.29
3506 5297 4.535526 ATTGTTGGCCAGTGTATTTTCC 57.464 40.909 5.11 0.00 0.00 3.13
3507 5298 2.243810 TGTTGGCCAGTGTATTTTCCC 58.756 47.619 5.11 0.00 0.00 3.97
3508 5299 1.201414 GTTGGCCAGTGTATTTTCCCG 59.799 52.381 5.11 0.00 0.00 5.14
3509 5300 0.963355 TGGCCAGTGTATTTTCCCGC 60.963 55.000 0.00 0.00 0.00 6.13
3510 5301 1.663379 GGCCAGTGTATTTTCCCGCC 61.663 60.000 0.00 0.00 0.00 6.13
3511 5302 0.963355 GCCAGTGTATTTTCCCGCCA 60.963 55.000 0.00 0.00 0.00 5.69
3512 5303 1.540267 CCAGTGTATTTTCCCGCCAA 58.460 50.000 0.00 0.00 0.00 4.52
3513 5304 1.201414 CCAGTGTATTTTCCCGCCAAC 59.799 52.381 0.00 0.00 0.00 3.77
3514 5305 1.201414 CAGTGTATTTTCCCGCCAACC 59.799 52.381 0.00 0.00 0.00 3.77
3515 5306 0.528924 GTGTATTTTCCCGCCAACCC 59.471 55.000 0.00 0.00 0.00 4.11
3516 5307 0.612453 TGTATTTTCCCGCCAACCCC 60.612 55.000 0.00 0.00 0.00 4.95
3517 5308 0.323999 GTATTTTCCCGCCAACCCCT 60.324 55.000 0.00 0.00 0.00 4.79
3518 5309 0.410270 TATTTTCCCGCCAACCCCTT 59.590 50.000 0.00 0.00 0.00 3.95
3519 5310 0.902984 ATTTTCCCGCCAACCCCTTC 60.903 55.000 0.00 0.00 0.00 3.46
3520 5311 3.516949 TTTCCCGCCAACCCCTTCC 62.517 63.158 0.00 0.00 0.00 3.46
3532 5323 4.653888 CCTTCCCGCCACCCGTTT 62.654 66.667 0.00 0.00 34.38 3.60
3533 5324 3.053896 CTTCCCGCCACCCGTTTC 61.054 66.667 0.00 0.00 34.38 2.78
3534 5325 4.646877 TTCCCGCCACCCGTTTCC 62.647 66.667 0.00 0.00 34.38 3.13
3540 5331 4.958897 CCACCCGTTTCCCGCCAA 62.959 66.667 0.00 0.00 34.38 4.52
3541 5332 3.666253 CACCCGTTTCCCGCCAAC 61.666 66.667 0.00 0.00 34.38 3.77
3542 5333 4.960866 ACCCGTTTCCCGCCAACC 62.961 66.667 0.00 0.00 34.38 3.77
3545 5336 4.653888 CGTTTCCCGCCAACCCCT 62.654 66.667 0.00 0.00 0.00 4.79
3546 5337 2.203582 GTTTCCCGCCAACCCCTT 60.204 61.111 0.00 0.00 0.00 3.95
3547 5338 1.835267 GTTTCCCGCCAACCCCTTT 60.835 57.895 0.00 0.00 0.00 3.11
3548 5339 1.532078 TTTCCCGCCAACCCCTTTC 60.532 57.895 0.00 0.00 0.00 2.62
3549 5340 3.516949 TTCCCGCCAACCCCTTTCC 62.517 63.158 0.00 0.00 0.00 3.13
3553 5344 4.986708 GCCAACCCCTTTCCGCCA 62.987 66.667 0.00 0.00 0.00 5.69
3554 5345 2.989253 CCAACCCCTTTCCGCCAC 60.989 66.667 0.00 0.00 0.00 5.01
3555 5346 2.989253 CAACCCCTTTCCGCCACC 60.989 66.667 0.00 0.00 0.00 4.61
3556 5347 4.295199 AACCCCTTTCCGCCACCC 62.295 66.667 0.00 0.00 0.00 4.61
3558 5349 4.060667 CCCCTTTCCGCCACCCAT 62.061 66.667 0.00 0.00 0.00 4.00
3559 5350 2.037208 CCCTTTCCGCCACCCATT 59.963 61.111 0.00 0.00 0.00 3.16
3560 5351 1.609210 CCCTTTCCGCCACCCATTT 60.609 57.895 0.00 0.00 0.00 2.32
3561 5352 1.604147 CCCTTTCCGCCACCCATTTC 61.604 60.000 0.00 0.00 0.00 2.17
3562 5353 1.604147 CCTTTCCGCCACCCATTTCC 61.604 60.000 0.00 0.00 0.00 3.13
3563 5354 1.604147 CTTTCCGCCACCCATTTCCC 61.604 60.000 0.00 0.00 0.00 3.97
3564 5355 3.929334 TTCCGCCACCCATTTCCCG 62.929 63.158 0.00 0.00 0.00 5.14
3568 5359 3.068064 CCACCCATTTCCCGCCAC 61.068 66.667 0.00 0.00 0.00 5.01
3569 5360 3.068064 CACCCATTTCCCGCCACC 61.068 66.667 0.00 0.00 0.00 4.61
3570 5361 4.376170 ACCCATTTCCCGCCACCC 62.376 66.667 0.00 0.00 0.00 4.61
3572 5363 4.733542 CCATTTCCCGCCACCCGT 62.734 66.667 0.00 0.00 34.38 5.28
3573 5364 2.675075 CATTTCCCGCCACCCGTT 60.675 61.111 0.00 0.00 34.38 4.44
3574 5365 2.116556 ATTTCCCGCCACCCGTTT 59.883 55.556 0.00 0.00 34.38 3.60
3575 5366 1.974875 ATTTCCCGCCACCCGTTTC 60.975 57.895 0.00 0.00 34.38 2.78
3576 5367 4.646877 TTCCCGCCACCCGTTTCC 62.647 66.667 0.00 0.00 34.38 3.13
3582 5373 4.958897 CCACCCGTTTCCCGCCAA 62.959 66.667 0.00 0.00 34.38 4.52
3583 5374 3.666253 CACCCGTTTCCCGCCAAC 61.666 66.667 0.00 0.00 34.38 3.77
3584 5375 4.960866 ACCCGTTTCCCGCCAACC 62.961 66.667 0.00 0.00 34.38 3.77
3587 5378 4.653888 CGTTTCCCGCCAACCCCT 62.654 66.667 0.00 0.00 0.00 4.79
3588 5379 2.203582 GTTTCCCGCCAACCCCTT 60.204 61.111 0.00 0.00 0.00 3.95
3589 5380 2.116556 TTTCCCGCCAACCCCTTC 59.883 61.111 0.00 0.00 0.00 3.46
3590 5381 3.516949 TTTCCCGCCAACCCCTTCC 62.517 63.158 0.00 0.00 0.00 3.46
3596 5387 4.060667 CCAACCCCTTCCCGCCAT 62.061 66.667 0.00 0.00 0.00 4.40
3597 5388 2.037208 CAACCCCTTCCCGCCATT 59.963 61.111 0.00 0.00 0.00 3.16
3598 5389 1.609210 CAACCCCTTCCCGCCATTT 60.609 57.895 0.00 0.00 0.00 2.32
3599 5390 1.157513 AACCCCTTCCCGCCATTTT 59.842 52.632 0.00 0.00 0.00 1.82
3600 5391 0.902984 AACCCCTTCCCGCCATTTTC 60.903 55.000 0.00 0.00 0.00 2.29
3601 5392 1.000359 CCCCTTCCCGCCATTTTCT 60.000 57.895 0.00 0.00 0.00 2.52
3602 5393 1.037579 CCCCTTCCCGCCATTTTCTC 61.038 60.000 0.00 0.00 0.00 2.87
3603 5394 1.037579 CCCTTCCCGCCATTTTCTCC 61.038 60.000 0.00 0.00 0.00 3.71
3604 5395 0.034089 CCTTCCCGCCATTTTCTCCT 60.034 55.000 0.00 0.00 0.00 3.69
3605 5396 1.383523 CTTCCCGCCATTTTCTCCTC 58.616 55.000 0.00 0.00 0.00 3.71
3606 5397 0.695924 TTCCCGCCATTTTCTCCTCA 59.304 50.000 0.00 0.00 0.00 3.86
3607 5398 0.253044 TCCCGCCATTTTCTCCTCAG 59.747 55.000 0.00 0.00 0.00 3.35
3608 5399 0.035056 CCCGCCATTTTCTCCTCAGT 60.035 55.000 0.00 0.00 0.00 3.41
3609 5400 1.209504 CCCGCCATTTTCTCCTCAGTA 59.790 52.381 0.00 0.00 0.00 2.74
3610 5401 2.280628 CCGCCATTTTCTCCTCAGTAC 58.719 52.381 0.00 0.00 0.00 2.73
3611 5402 2.354704 CCGCCATTTTCTCCTCAGTACA 60.355 50.000 0.00 0.00 0.00 2.90
3612 5403 3.535561 CGCCATTTTCTCCTCAGTACAT 58.464 45.455 0.00 0.00 0.00 2.29
3613 5404 4.442893 CCGCCATTTTCTCCTCAGTACATA 60.443 45.833 0.00 0.00 0.00 2.29
3614 5405 5.300752 CGCCATTTTCTCCTCAGTACATAT 58.699 41.667 0.00 0.00 0.00 1.78
3615 5406 6.455647 CGCCATTTTCTCCTCAGTACATATA 58.544 40.000 0.00 0.00 0.00 0.86
3616 5407 6.929049 CGCCATTTTCTCCTCAGTACATATAA 59.071 38.462 0.00 0.00 0.00 0.98
3617 5408 7.441157 CGCCATTTTCTCCTCAGTACATATAAA 59.559 37.037 0.00 0.00 0.00 1.40
3618 5409 9.120538 GCCATTTTCTCCTCAGTACATATAAAA 57.879 33.333 0.00 0.00 0.00 1.52
3622 5413 9.457436 TTTTCTCCTCAGTACATATAAAAACCC 57.543 33.333 0.00 0.00 0.00 4.11
3623 5414 7.133133 TCTCCTCAGTACATATAAAAACCCC 57.867 40.000 0.00 0.00 0.00 4.95
3624 5415 6.906901 TCTCCTCAGTACATATAAAAACCCCT 59.093 38.462 0.00 0.00 0.00 4.79
3625 5416 7.404980 TCTCCTCAGTACATATAAAAACCCCTT 59.595 37.037 0.00 0.00 0.00 3.95
3626 5417 7.571025 TCCTCAGTACATATAAAAACCCCTTC 58.429 38.462 0.00 0.00 0.00 3.46
3627 5418 7.183112 TCCTCAGTACATATAAAAACCCCTTCA 59.817 37.037 0.00 0.00 0.00 3.02
3628 5419 7.499232 CCTCAGTACATATAAAAACCCCTTCAG 59.501 40.741 0.00 0.00 0.00 3.02
3629 5420 7.343357 TCAGTACATATAAAAACCCCTTCAGG 58.657 38.462 0.00 0.00 0.00 3.86
3630 5421 6.039382 CAGTACATATAAAAACCCCTTCAGGC 59.961 42.308 0.00 0.00 0.00 4.85
3631 5422 3.951680 ACATATAAAAACCCCTTCAGGCG 59.048 43.478 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.154488 CAACCACGTCCGCAATTCG 60.154 57.895 0.00 0.00 38.08 3.34
76 77 1.841556 AAGAAGGTCACCCTCGGCA 60.842 57.895 0.00 0.00 41.56 5.69
85 86 3.170362 CCCTGCCCAAGAAGGTCA 58.830 61.111 0.00 0.00 34.66 4.02
151 152 2.659016 CACTCCGCCTCTGCTTCA 59.341 61.111 0.00 0.00 34.43 3.02
329 330 4.415332 GTGGACGCGCTCTTCGGA 62.415 66.667 5.73 0.00 38.94 4.55
534 535 3.728373 GGGCATCACCTCCCCGTT 61.728 66.667 0.00 0.00 39.10 4.44
590 591 4.295119 GACACCGTGACCGCCACT 62.295 66.667 5.28 0.00 43.53 4.00
761 771 1.524849 GCTCTCCTTTCGCATCCCC 60.525 63.158 0.00 0.00 0.00 4.81
763 773 1.435408 GCTGCTCTCCTTTCGCATCC 61.435 60.000 0.00 0.00 32.62 3.51
766 776 2.433145 CGCTGCTCTCCTTTCGCA 60.433 61.111 0.00 0.00 0.00 5.10
925 994 5.450550 CGCCTGTCAGTCACTCTTCATAATA 60.451 44.000 0.00 0.00 0.00 0.98
927 997 3.367395 CGCCTGTCAGTCACTCTTCATAA 60.367 47.826 0.00 0.00 0.00 1.90
929 999 1.067283 CGCCTGTCAGTCACTCTTCAT 60.067 52.381 0.00 0.00 0.00 2.57
973 1043 2.554032 GTTGGTGGTGGAGATTGTTCTG 59.446 50.000 0.00 0.00 30.30 3.02
997 1067 3.417224 CATCGCCATCGCCATCGG 61.417 66.667 0.00 0.00 36.13 4.18
1015 1085 3.735029 GACGACGAGCAGGACGGT 61.735 66.667 0.00 0.00 34.93 4.83
1104 1206 0.723981 GAGGCTCACAGTCGCAATTC 59.276 55.000 10.25 0.00 0.00 2.17
1107 1209 2.159819 GAGGAGGCTCACAGTCGCAA 62.160 60.000 17.69 0.00 0.00 4.85
1155 1266 4.491602 GCTCAGATCAGAAACAAATCGTCG 60.492 45.833 0.00 0.00 0.00 5.12
1164 1275 3.310227 CAGAGCATGCTCAGATCAGAAAC 59.690 47.826 40.91 16.97 44.99 2.78
1347 1476 4.347000 GCTAGAAAGGGGGTGATGTATGTA 59.653 45.833 0.00 0.00 0.00 2.29
1352 1481 1.972588 AGCTAGAAAGGGGGTGATGT 58.027 50.000 0.00 0.00 0.00 3.06
1353 1482 2.239654 TCAAGCTAGAAAGGGGGTGATG 59.760 50.000 0.00 0.00 0.00 3.07
1354 1483 2.507471 CTCAAGCTAGAAAGGGGGTGAT 59.493 50.000 0.00 0.00 0.00 3.06
1355 1484 1.909302 CTCAAGCTAGAAAGGGGGTGA 59.091 52.381 0.00 0.00 0.00 4.02
1356 1485 1.909302 TCTCAAGCTAGAAAGGGGGTG 59.091 52.381 0.00 0.00 0.00 4.61
1357 1486 2.344093 TCTCAAGCTAGAAAGGGGGT 57.656 50.000 0.00 0.00 0.00 4.95
1358 1487 2.840651 TCTTCTCAAGCTAGAAAGGGGG 59.159 50.000 0.00 0.00 35.14 5.40
1373 1505 4.214332 AGACGCCATTGTTTCTTTCTTCTC 59.786 41.667 0.00 0.00 0.00 2.87
1374 1506 4.023707 CAGACGCCATTGTTTCTTTCTTCT 60.024 41.667 0.00 0.00 0.00 2.85
1375 1507 4.222114 CAGACGCCATTGTTTCTTTCTTC 58.778 43.478 0.00 0.00 0.00 2.87
1376 1508 3.004734 CCAGACGCCATTGTTTCTTTCTT 59.995 43.478 0.00 0.00 0.00 2.52
1535 2644 1.468985 TGACAGAGCAGAGTAGAGCC 58.531 55.000 0.00 0.00 0.00 4.70
1572 2686 2.010582 TTGTGAACCAAACTGCCGCC 62.011 55.000 0.00 0.00 0.00 6.13
1628 2778 4.331968 ACCACACACAATTTATCACCGAT 58.668 39.130 0.00 0.00 0.00 4.18
1631 2781 8.825667 AAATTAACCACACACAATTTATCACC 57.174 30.769 0.00 0.00 30.80 4.02
1755 2931 4.298626 AGGGAATTGGTGTAGAGCATAGA 58.701 43.478 0.00 0.00 0.00 1.98
1765 2941 5.011635 GTGGAATTTACAAGGGAATTGGTGT 59.988 40.000 0.00 0.00 43.68 4.16
1796 3025 1.539341 CTGCACGACTCGACAGTATG 58.461 55.000 5.20 0.00 46.00 2.39
1797 3026 0.179161 GCTGCACGACTCGACAGTAT 60.179 55.000 19.95 0.00 37.10 2.12
1855 3084 0.603065 GCAATGTTGAACACCCCCTC 59.397 55.000 0.00 0.00 0.00 4.30
1911 3225 3.649986 GCGGGTGCCATATGTCGC 61.650 66.667 1.24 5.59 36.51 5.19
1928 3242 1.539560 ATCGATCTGGCGGGATCTGG 61.540 60.000 14.99 4.61 39.73 3.86
1929 3243 0.319728 AATCGATCTGGCGGGATCTG 59.680 55.000 14.99 10.25 39.73 2.90
1930 3244 1.924731 TAATCGATCTGGCGGGATCT 58.075 50.000 14.99 3.48 39.73 2.75
1931 3245 2.743636 TTAATCGATCTGGCGGGATC 57.256 50.000 0.00 9.34 38.83 3.36
1932 3246 2.936993 GCATTAATCGATCTGGCGGGAT 60.937 50.000 0.00 0.00 0.00 3.85
1933 3247 1.608025 GCATTAATCGATCTGGCGGGA 60.608 52.381 0.00 0.00 0.00 5.14
1978 3365 0.821301 TGCGACTTGTCCCAATGCAA 60.821 50.000 0.00 0.00 0.00 4.08
1995 3382 9.949174 AAAATAAAATGATTCACCAAAAACTGC 57.051 25.926 0.00 0.00 0.00 4.40
2088 3558 7.555965 AGCTGTACAATACTCAATGACACATA 58.444 34.615 0.00 0.00 0.00 2.29
2161 3779 5.482006 CCATATGAAGTCCTCGATGCAATA 58.518 41.667 3.65 0.00 0.00 1.90
2368 4142 5.625426 ATCTTCAGATAAACAGCTTGAGCGA 60.625 40.000 0.00 0.00 38.46 4.93
2374 4148 7.846066 AGTACAGATCTTCAGATAAACAGCTT 58.154 34.615 0.00 0.00 34.37 3.74
2405 4179 5.713861 AGAAAAAGAACCATGAGAATGAGGG 59.286 40.000 0.00 0.00 0.00 4.30
2411 4185 6.219417 TGCAAAGAAAAAGAACCATGAGAA 57.781 33.333 0.00 0.00 0.00 2.87
2449 4229 4.458397 CATTTGATACTCATCAGGCCTGT 58.542 43.478 31.58 16.68 42.11 4.00
2550 4330 0.038251 TCATCGTCGCCATAGCCATC 60.038 55.000 0.00 0.00 34.57 3.51
2650 4430 4.183686 CCAAGCAATGCGCCGAGG 62.184 66.667 4.18 0.00 44.04 4.63
2756 4537 1.284408 CAGCGCCGCAACCTAAAAA 59.716 52.632 13.36 0.00 0.00 1.94
2806 4587 5.049828 GCAACTCTGTTTACAAAAATGCCT 58.950 37.500 0.00 0.00 0.00 4.75
2906 4693 7.244192 ACTAGAAAAACAATAATCGAAGCAGC 58.756 34.615 0.00 0.00 0.00 5.25
2945 4733 5.016173 CCTCCAGTATTTCAATGACCCAAA 58.984 41.667 0.00 0.00 0.00 3.28
3032 4820 7.689446 TCTATGAACACCTCCTCGATATAAG 57.311 40.000 0.00 0.00 0.00 1.73
3086 4874 9.461312 TTGGTGCAATAATTATCTGTTAGTTCT 57.539 29.630 0.00 0.00 0.00 3.01
3121 4909 9.877178 ATTCAGAGTACTAACACCTCTTTTATG 57.123 33.333 0.00 0.00 33.38 1.90
3134 4922 6.036735 GCATGCGGTTTTATTCAGAGTACTAA 59.963 38.462 0.00 0.00 0.00 2.24
3196 4987 7.692291 CGAATTTGCTTCAAATAACGTGATAGT 59.308 33.333 16.01 0.00 42.32 2.12
3197 4988 7.164171 CCGAATTTGCTTCAAATAACGTGATAG 59.836 37.037 19.35 0.00 42.32 2.08
3198 4989 6.964370 CCGAATTTGCTTCAAATAACGTGATA 59.036 34.615 19.35 0.00 42.32 2.15
3199 4990 5.799936 CCGAATTTGCTTCAAATAACGTGAT 59.200 36.000 19.35 0.00 42.32 3.06
3200 4991 5.049336 TCCGAATTTGCTTCAAATAACGTGA 60.049 36.000 19.35 15.70 42.32 4.35
3201 4992 5.150683 TCCGAATTTGCTTCAAATAACGTG 58.849 37.500 19.35 14.56 42.32 4.49
3202 4993 5.365403 TCCGAATTTGCTTCAAATAACGT 57.635 34.783 19.35 0.00 42.32 3.99
3203 4994 6.362283 AGTTTCCGAATTTGCTTCAAATAACG 59.638 34.615 16.68 16.68 42.32 3.18
3204 4995 7.637709 AGTTTCCGAATTTGCTTCAAATAAC 57.362 32.000 5.35 6.14 42.32 1.89
3205 4996 8.353684 TGTAGTTTCCGAATTTGCTTCAAATAA 58.646 29.630 5.35 0.00 42.32 1.40
3206 4997 7.877003 TGTAGTTTCCGAATTTGCTTCAAATA 58.123 30.769 5.35 0.00 42.32 1.40
3207 4998 6.744112 TGTAGTTTCCGAATTTGCTTCAAAT 58.256 32.000 0.00 0.00 44.62 2.32
3208 4999 6.137794 TGTAGTTTCCGAATTTGCTTCAAA 57.862 33.333 0.00 0.00 37.75 2.69
3209 5000 5.757886 CTGTAGTTTCCGAATTTGCTTCAA 58.242 37.500 0.00 0.00 33.10 2.69
3210 5001 4.320202 GCTGTAGTTTCCGAATTTGCTTCA 60.320 41.667 0.00 0.00 33.10 3.02
3211 5002 4.159120 GCTGTAGTTTCCGAATTTGCTTC 58.841 43.478 0.00 0.00 0.00 3.86
3212 5003 3.568007 TGCTGTAGTTTCCGAATTTGCTT 59.432 39.130 0.00 0.00 0.00 3.91
3213 5004 3.146066 TGCTGTAGTTTCCGAATTTGCT 58.854 40.909 0.00 0.00 0.00 3.91
3214 5005 3.552604 TGCTGTAGTTTCCGAATTTGC 57.447 42.857 0.00 0.00 0.00 3.68
3215 5006 5.046910 ACATGCTGTAGTTTCCGAATTTG 57.953 39.130 0.00 0.00 0.00 2.32
3216 5007 5.705609 AACATGCTGTAGTTTCCGAATTT 57.294 34.783 0.00 0.00 0.00 1.82
3217 5008 5.705609 AAACATGCTGTAGTTTCCGAATT 57.294 34.783 0.00 0.00 32.90 2.17
3218 5009 5.460646 CAAAACATGCTGTAGTTTCCGAAT 58.539 37.500 0.00 0.00 36.98 3.34
3219 5010 4.261405 CCAAAACATGCTGTAGTTTCCGAA 60.261 41.667 0.00 0.00 36.98 4.30
3220 5011 3.252215 CCAAAACATGCTGTAGTTTCCGA 59.748 43.478 0.00 0.00 36.98 4.55
3221 5012 3.252215 TCCAAAACATGCTGTAGTTTCCG 59.748 43.478 0.00 0.00 36.98 4.30
3222 5013 4.518970 TCTCCAAAACATGCTGTAGTTTCC 59.481 41.667 0.00 0.00 36.98 3.13
3223 5014 5.689383 TCTCCAAAACATGCTGTAGTTTC 57.311 39.130 0.00 0.00 36.98 2.78
3224 5015 6.463995 TTTCTCCAAAACATGCTGTAGTTT 57.536 33.333 0.00 0.00 39.46 2.66
3225 5016 6.655078 ATTTCTCCAAAACATGCTGTAGTT 57.345 33.333 0.00 0.00 0.00 2.24
3226 5017 7.611467 TGATATTTCTCCAAAACATGCTGTAGT 59.389 33.333 0.00 0.00 0.00 2.73
3227 5018 7.988737 TGATATTTCTCCAAAACATGCTGTAG 58.011 34.615 0.00 0.00 0.00 2.74
3228 5019 7.067372 CCTGATATTTCTCCAAAACATGCTGTA 59.933 37.037 0.00 0.00 0.00 2.74
3229 5020 6.127535 CCTGATATTTCTCCAAAACATGCTGT 60.128 38.462 0.00 0.00 0.00 4.40
3230 5021 6.127535 ACCTGATATTTCTCCAAAACATGCTG 60.128 38.462 0.00 0.00 0.00 4.41
3231 5022 5.954150 ACCTGATATTTCTCCAAAACATGCT 59.046 36.000 0.00 0.00 0.00 3.79
3232 5023 6.096001 AGACCTGATATTTCTCCAAAACATGC 59.904 38.462 0.00 0.00 0.00 4.06
3233 5024 7.636150 AGACCTGATATTTCTCCAAAACATG 57.364 36.000 0.00 0.00 0.00 3.21
3234 5025 7.500559 GCTAGACCTGATATTTCTCCAAAACAT 59.499 37.037 0.00 0.00 0.00 2.71
3235 5026 6.823689 GCTAGACCTGATATTTCTCCAAAACA 59.176 38.462 0.00 0.00 0.00 2.83
3236 5027 6.823689 TGCTAGACCTGATATTTCTCCAAAAC 59.176 38.462 0.00 0.00 0.00 2.43
3237 5028 6.823689 GTGCTAGACCTGATATTTCTCCAAAA 59.176 38.462 0.00 0.00 0.00 2.44
3238 5029 6.349300 GTGCTAGACCTGATATTTCTCCAAA 58.651 40.000 0.00 0.00 0.00 3.28
3239 5030 5.163301 GGTGCTAGACCTGATATTTCTCCAA 60.163 44.000 0.00 0.00 42.25 3.53
3240 5031 4.345257 GGTGCTAGACCTGATATTTCTCCA 59.655 45.833 0.00 0.00 42.25 3.86
3241 5032 4.262678 GGGTGCTAGACCTGATATTTCTCC 60.263 50.000 10.11 0.00 45.33 3.71
3242 5033 4.262678 GGGGTGCTAGACCTGATATTTCTC 60.263 50.000 10.11 0.00 45.33 2.87
3243 5034 3.648545 GGGGTGCTAGACCTGATATTTCT 59.351 47.826 10.11 0.00 45.33 2.52
3244 5035 3.555168 CGGGGTGCTAGACCTGATATTTC 60.555 52.174 10.11 0.00 45.33 2.17
3245 5036 2.368875 CGGGGTGCTAGACCTGATATTT 59.631 50.000 10.11 0.00 45.33 1.40
3246 5037 1.971357 CGGGGTGCTAGACCTGATATT 59.029 52.381 10.11 0.00 45.33 1.28
3247 5038 1.133136 ACGGGGTGCTAGACCTGATAT 60.133 52.381 12.64 0.00 45.33 1.63
3248 5039 0.260816 ACGGGGTGCTAGACCTGATA 59.739 55.000 12.64 0.00 45.33 2.15
3249 5040 1.001760 ACGGGGTGCTAGACCTGAT 59.998 57.895 12.64 0.00 45.33 2.90
3250 5041 1.681327 GACGGGGTGCTAGACCTGA 60.681 63.158 12.64 0.00 45.33 3.86
3251 5042 2.893398 GACGGGGTGCTAGACCTG 59.107 66.667 10.11 8.12 45.33 4.00
3252 5043 2.754658 CGACGGGGTGCTAGACCT 60.755 66.667 10.11 0.00 45.33 3.85
3253 5044 3.834799 CCGACGGGGTGCTAGACC 61.835 72.222 5.81 0.00 45.28 3.85
3254 5045 4.509737 GCCGACGGGGTGCTAGAC 62.510 72.222 17.22 0.00 38.44 2.59
3272 5063 1.241315 CCCTTTACGGCCAACACCTG 61.241 60.000 2.24 0.00 0.00 4.00
3273 5064 1.074248 CCCTTTACGGCCAACACCT 59.926 57.895 2.24 0.00 0.00 4.00
3274 5065 1.228337 ACCCTTTACGGCCAACACC 60.228 57.895 2.24 0.00 0.00 4.16
3275 5066 0.820482 ACACCCTTTACGGCCAACAC 60.820 55.000 2.24 0.00 0.00 3.32
3276 5067 0.106619 AACACCCTTTACGGCCAACA 60.107 50.000 2.24 0.00 0.00 3.33
3277 5068 1.034356 AAACACCCTTTACGGCCAAC 58.966 50.000 2.24 0.00 0.00 3.77
3278 5069 1.682323 GAAAACACCCTTTACGGCCAA 59.318 47.619 2.24 0.00 0.00 4.52
3279 5070 1.320507 GAAAACACCCTTTACGGCCA 58.679 50.000 2.24 0.00 0.00 5.36
3280 5071 0.239082 CGAAAACACCCTTTACGGCC 59.761 55.000 0.00 0.00 0.00 6.13
3281 5072 0.239082 CCGAAAACACCCTTTACGGC 59.761 55.000 0.00 0.00 33.03 5.68
3282 5073 0.239082 GCCGAAAACACCCTTTACGG 59.761 55.000 0.00 0.00 41.44 4.02
3283 5074 0.239082 GGCCGAAAACACCCTTTACG 59.761 55.000 0.00 0.00 0.00 3.18
3284 5075 1.001048 GTGGCCGAAAACACCCTTTAC 60.001 52.381 0.00 0.00 0.00 2.01
3285 5076 1.320507 GTGGCCGAAAACACCCTTTA 58.679 50.000 0.00 0.00 0.00 1.85
3286 5077 2.120765 GTGGCCGAAAACACCCTTT 58.879 52.632 0.00 0.00 0.00 3.11
3287 5078 3.850508 GTGGCCGAAAACACCCTT 58.149 55.556 0.00 0.00 0.00 3.95
3291 5082 1.439679 CTAGAGGTGGCCGAAAACAC 58.560 55.000 0.00 0.00 36.89 3.32
3292 5083 0.323629 CCTAGAGGTGGCCGAAAACA 59.676 55.000 0.00 0.00 0.00 2.83
3293 5084 1.025113 GCCTAGAGGTGGCCGAAAAC 61.025 60.000 0.00 0.00 44.32 2.43
3294 5085 1.298667 GCCTAGAGGTGGCCGAAAA 59.701 57.895 0.00 0.00 44.32 2.29
3295 5086 2.987125 GCCTAGAGGTGGCCGAAA 59.013 61.111 0.00 0.00 44.32 3.46
3301 5092 1.344763 CCTATTTCGGCCTAGAGGTGG 59.655 57.143 0.00 0.00 37.57 4.61
3302 5093 1.344763 CCCTATTTCGGCCTAGAGGTG 59.655 57.143 0.00 0.00 37.57 4.00
3303 5094 1.062352 ACCCTATTTCGGCCTAGAGGT 60.062 52.381 0.00 2.90 37.57 3.85
3304 5095 1.718280 ACCCTATTTCGGCCTAGAGG 58.282 55.000 0.00 1.93 38.53 3.69
3305 5096 3.840124 AAACCCTATTTCGGCCTAGAG 57.160 47.619 0.00 0.00 0.00 2.43
3306 5097 4.146745 GAAAACCCTATTTCGGCCTAGA 57.853 45.455 0.00 0.00 30.37 2.43
3314 5105 2.416836 GCAAGGCCGAAAACCCTATTTC 60.417 50.000 0.00 0.00 36.24 2.17
3315 5106 1.548719 GCAAGGCCGAAAACCCTATTT 59.451 47.619 0.00 0.00 0.00 1.40
3316 5107 1.182667 GCAAGGCCGAAAACCCTATT 58.817 50.000 0.00 0.00 0.00 1.73
3317 5108 0.683179 GGCAAGGCCGAAAACCCTAT 60.683 55.000 0.00 0.00 39.62 2.57
3318 5109 1.303806 GGCAAGGCCGAAAACCCTA 60.304 57.895 0.00 0.00 39.62 3.53
3319 5110 2.600470 GGCAAGGCCGAAAACCCT 60.600 61.111 0.00 0.00 39.62 4.34
3336 5127 0.103937 TTGCACCTTTTCGGCCAAAG 59.896 50.000 2.24 6.03 35.61 2.77
3337 5128 0.537188 TTTGCACCTTTTCGGCCAAA 59.463 45.000 2.24 0.00 35.92 3.28
3338 5129 0.103937 CTTTGCACCTTTTCGGCCAA 59.896 50.000 2.24 0.00 35.61 4.52
3339 5130 1.739049 CTTTGCACCTTTTCGGCCA 59.261 52.632 2.24 0.00 35.61 5.36
3340 5131 1.664649 GCTTTGCACCTTTTCGGCC 60.665 57.895 0.00 0.00 35.61 6.13
3341 5132 0.940991 CAGCTTTGCACCTTTTCGGC 60.941 55.000 0.00 0.00 35.61 5.54
3342 5133 0.318955 CCAGCTTTGCACCTTTTCGG 60.319 55.000 0.00 0.00 39.35 4.30
3343 5134 0.940991 GCCAGCTTTGCACCTTTTCG 60.941 55.000 0.11 0.00 0.00 3.46
3344 5135 0.601046 GGCCAGCTTTGCACCTTTTC 60.601 55.000 0.00 0.00 0.00 2.29
3345 5136 1.447217 GGCCAGCTTTGCACCTTTT 59.553 52.632 0.00 0.00 0.00 2.27
3346 5137 2.859981 CGGCCAGCTTTGCACCTTT 61.860 57.895 2.24 0.00 0.00 3.11
3347 5138 3.297620 CGGCCAGCTTTGCACCTT 61.298 61.111 2.24 0.00 0.00 3.50
3348 5139 3.790416 TTCGGCCAGCTTTGCACCT 62.790 57.895 2.24 0.00 0.00 4.00
3349 5140 3.273080 CTTCGGCCAGCTTTGCACC 62.273 63.158 2.24 0.00 0.00 5.01
3350 5141 2.192608 CTCTTCGGCCAGCTTTGCAC 62.193 60.000 2.24 0.00 0.00 4.57
3351 5142 1.968017 CTCTTCGGCCAGCTTTGCA 60.968 57.895 2.24 0.00 0.00 4.08
3352 5143 2.694760 CCTCTTCGGCCAGCTTTGC 61.695 63.158 2.24 0.00 0.00 3.68
3353 5144 2.042831 CCCTCTTCGGCCAGCTTTG 61.043 63.158 2.24 0.00 0.00 2.77
3354 5145 2.352805 CCCTCTTCGGCCAGCTTT 59.647 61.111 2.24 0.00 0.00 3.51
3355 5146 3.721706 CCCCTCTTCGGCCAGCTT 61.722 66.667 2.24 0.00 0.00 3.74
3357 5148 4.785453 CACCCCTCTTCGGCCAGC 62.785 72.222 2.24 0.00 0.00 4.85
3358 5149 2.411765 AAACACCCCTCTTCGGCCAG 62.412 60.000 2.24 0.00 0.00 4.85
3359 5150 2.002018 AAAACACCCCTCTTCGGCCA 62.002 55.000 2.24 0.00 0.00 5.36
3360 5151 1.228459 AAAACACCCCTCTTCGGCC 60.228 57.895 0.00 0.00 0.00 6.13
3361 5152 1.574702 CGAAAACACCCCTCTTCGGC 61.575 60.000 0.00 0.00 37.58 5.54
3362 5153 2.540145 CGAAAACACCCCTCTTCGG 58.460 57.895 0.00 0.00 37.58 4.30
3363 5154 1.574702 GCCGAAAACACCCCTCTTCG 61.575 60.000 0.00 0.00 40.18 3.79
3364 5155 1.241990 GGCCGAAAACACCCCTCTTC 61.242 60.000 0.00 0.00 0.00 2.87
3365 5156 1.228459 GGCCGAAAACACCCCTCTT 60.228 57.895 0.00 0.00 0.00 2.85
3366 5157 2.434774 GGCCGAAAACACCCCTCT 59.565 61.111 0.00 0.00 0.00 3.69
3367 5158 2.114411 TGGCCGAAAACACCCCTC 59.886 61.111 0.00 0.00 0.00 4.30
3368 5159 2.203437 GTGGCCGAAAACACCCCT 60.203 61.111 0.00 0.00 0.00 4.79
3372 5163 0.249280 CAAAGGGTGGCCGAAAACAC 60.249 55.000 0.00 0.00 36.89 3.32
3373 5164 1.395826 CCAAAGGGTGGCCGAAAACA 61.396 55.000 0.00 0.00 41.72 2.83
3374 5165 1.365999 CCAAAGGGTGGCCGAAAAC 59.634 57.895 0.00 0.00 41.72 2.43
3375 5166 3.863606 CCAAAGGGTGGCCGAAAA 58.136 55.556 0.00 0.00 41.72 2.29
3383 5174 1.665442 CCTTTTCGGCCAAAGGGTG 59.335 57.895 21.78 2.32 46.49 4.61
3384 5175 4.191243 CCTTTTCGGCCAAAGGGT 57.809 55.556 21.78 0.00 46.49 4.34
3387 5178 3.452755 AAAAGTCCTTTTCGGCCAAAG 57.547 42.857 2.24 6.03 38.27 2.77
3388 5179 3.526534 CAAAAAGTCCTTTTCGGCCAAA 58.473 40.909 2.24 0.00 41.45 3.28
3389 5180 2.159028 CCAAAAAGTCCTTTTCGGCCAA 60.159 45.455 2.24 0.00 41.45 4.52
3390 5181 1.410882 CCAAAAAGTCCTTTTCGGCCA 59.589 47.619 2.24 0.00 41.45 5.36
3391 5182 1.872237 GCCAAAAAGTCCTTTTCGGCC 60.872 52.381 19.25 0.00 41.45 6.13
3392 5183 1.497991 GCCAAAAAGTCCTTTTCGGC 58.502 50.000 16.30 16.30 41.45 5.54
3393 5184 1.686587 AGGCCAAAAAGTCCTTTTCGG 59.313 47.619 5.01 5.32 41.45 4.30
3394 5185 3.568430 ACTAGGCCAAAAAGTCCTTTTCG 59.432 43.478 5.01 0.00 41.45 3.46
3395 5186 4.341235 ACACTAGGCCAAAAAGTCCTTTTC 59.659 41.667 5.01 0.00 41.45 2.29
3396 5187 4.286707 ACACTAGGCCAAAAAGTCCTTTT 58.713 39.130 5.01 0.00 43.88 2.27
3397 5188 3.910989 ACACTAGGCCAAAAAGTCCTTT 58.089 40.909 5.01 0.00 0.00 3.11
3398 5189 3.595190 ACACTAGGCCAAAAAGTCCTT 57.405 42.857 5.01 0.00 0.00 3.36
3399 5190 3.009143 CCTACACTAGGCCAAAAAGTCCT 59.991 47.826 5.01 0.00 39.48 3.85
3400 5191 3.344515 CCTACACTAGGCCAAAAAGTCC 58.655 50.000 5.01 0.00 39.48 3.85
3411 5202 7.017528 AAAAGTACTTTTCGGCCTACACTAGG 61.018 42.308 24.66 0.00 42.47 3.02
3412 5203 4.715527 AGTACTTTTCGGCCTACACTAG 57.284 45.455 0.00 0.00 0.00 2.57
3413 5204 5.473066 AAAGTACTTTTCGGCCTACACTA 57.527 39.130 15.22 0.00 0.00 2.74
3414 5205 4.347360 AAAGTACTTTTCGGCCTACACT 57.653 40.909 15.22 0.00 0.00 3.55
3415 5206 5.209977 CAAAAAGTACTTTTCGGCCTACAC 58.790 41.667 28.90 0.00 41.45 2.90
3416 5207 4.276431 CCAAAAAGTACTTTTCGGCCTACA 59.724 41.667 28.90 0.00 41.45 2.74
3417 5208 4.276678 ACCAAAAAGTACTTTTCGGCCTAC 59.723 41.667 29.78 0.00 41.45 3.18
3418 5209 4.463070 ACCAAAAAGTACTTTTCGGCCTA 58.537 39.130 29.78 0.00 41.45 3.93
3419 5210 3.293337 ACCAAAAAGTACTTTTCGGCCT 58.707 40.909 29.78 14.56 41.45 5.19
3420 5211 3.067040 TGACCAAAAAGTACTTTTCGGCC 59.933 43.478 29.78 22.86 41.45 6.13
3421 5212 4.295857 TGACCAAAAAGTACTTTTCGGC 57.704 40.909 29.78 24.51 41.45 5.54
3422 5213 6.126568 TCTTGACCAAAAAGTACTTTTCGG 57.873 37.500 28.72 28.72 41.45 4.30
3423 5214 9.382244 CTAATCTTGACCAAAAAGTACTTTTCG 57.618 33.333 28.90 23.48 41.45 3.46
3424 5215 9.678941 CCTAATCTTGACCAAAAAGTACTTTTC 57.321 33.333 28.90 19.00 41.45 2.29
3425 5216 8.141909 GCCTAATCTTGACCAAAAAGTACTTTT 58.858 33.333 24.66 24.66 43.88 2.27
3426 5217 7.255836 GGCCTAATCTTGACCAAAAAGTACTTT 60.256 37.037 15.22 15.22 0.00 2.66
3427 5218 6.208797 GGCCTAATCTTGACCAAAAAGTACTT 59.791 38.462 1.12 1.12 0.00 2.24
3428 5219 5.710567 GGCCTAATCTTGACCAAAAAGTACT 59.289 40.000 0.00 0.00 0.00 2.73
3429 5220 5.391629 CGGCCTAATCTTGACCAAAAAGTAC 60.392 44.000 0.00 0.00 0.00 2.73
3430 5221 4.698304 CGGCCTAATCTTGACCAAAAAGTA 59.302 41.667 0.00 0.00 0.00 2.24
3431 5222 3.506067 CGGCCTAATCTTGACCAAAAAGT 59.494 43.478 0.00 0.00 0.00 2.66
3432 5223 3.756434 TCGGCCTAATCTTGACCAAAAAG 59.244 43.478 0.00 0.00 0.00 2.27
3433 5224 3.757270 TCGGCCTAATCTTGACCAAAAA 58.243 40.909 0.00 0.00 0.00 1.94
3434 5225 3.426787 TCGGCCTAATCTTGACCAAAA 57.573 42.857 0.00 0.00 0.00 2.44
3435 5226 3.426787 TTCGGCCTAATCTTGACCAAA 57.573 42.857 0.00 0.00 0.00 3.28
3436 5227 3.426787 TTTCGGCCTAATCTTGACCAA 57.573 42.857 0.00 0.00 0.00 3.67
3437 5228 3.244770 ACTTTTCGGCCTAATCTTGACCA 60.245 43.478 0.00 0.00 0.00 4.02
3438 5229 3.344515 ACTTTTCGGCCTAATCTTGACC 58.655 45.455 0.00 0.00 0.00 4.02
3439 5230 3.374367 GGACTTTTCGGCCTAATCTTGAC 59.626 47.826 0.00 0.00 0.00 3.18
3440 5231 3.606687 GGACTTTTCGGCCTAATCTTGA 58.393 45.455 0.00 0.00 0.00 3.02
3441 5232 2.683362 GGGACTTTTCGGCCTAATCTTG 59.317 50.000 0.00 0.00 0.00 3.02
3442 5233 2.576648 AGGGACTTTTCGGCCTAATCTT 59.423 45.455 0.00 0.00 27.25 2.40
3443 5234 2.197465 AGGGACTTTTCGGCCTAATCT 58.803 47.619 0.00 0.00 27.25 2.40
3444 5235 2.711978 AGGGACTTTTCGGCCTAATC 57.288 50.000 0.00 0.00 27.25 1.75
3457 5248 1.149133 AAAGATGGGCCCAAGGGACT 61.149 55.000 32.58 19.39 44.51 3.85
3458 5249 0.252239 AAAAGATGGGCCCAAGGGAC 60.252 55.000 32.58 17.42 44.33 4.46
3459 5250 0.041090 GAAAAGATGGGCCCAAGGGA 59.959 55.000 32.58 4.35 37.50 4.20
3460 5251 0.977627 GGAAAAGATGGGCCCAAGGG 60.978 60.000 32.58 0.00 38.57 3.95
3461 5252 0.977627 GGGAAAAGATGGGCCCAAGG 60.978 60.000 32.58 0.00 40.39 3.61
3462 5253 1.322538 CGGGAAAAGATGGGCCCAAG 61.323 60.000 32.58 7.83 40.71 3.61
3463 5254 1.304879 CGGGAAAAGATGGGCCCAA 60.305 57.895 32.58 13.16 40.71 4.12
3464 5255 2.087857 AACGGGAAAAGATGGGCCCA 62.088 55.000 30.92 30.92 40.71 5.36
3465 5256 0.033894 TAACGGGAAAAGATGGGCCC 60.034 55.000 17.59 17.59 37.21 5.80
3466 5257 1.842052 TTAACGGGAAAAGATGGGCC 58.158 50.000 0.00 0.00 0.00 5.80
3467 5258 3.194755 ACAATTAACGGGAAAAGATGGGC 59.805 43.478 0.00 0.00 0.00 5.36
3468 5259 5.167845 CAACAATTAACGGGAAAAGATGGG 58.832 41.667 0.00 0.00 0.00 4.00
3469 5260 5.167845 CCAACAATTAACGGGAAAAGATGG 58.832 41.667 0.00 0.00 0.00 3.51
3470 5261 4.625311 GCCAACAATTAACGGGAAAAGATG 59.375 41.667 0.00 0.00 0.00 2.90
3471 5262 4.322424 GGCCAACAATTAACGGGAAAAGAT 60.322 41.667 0.00 0.00 0.00 2.40
3472 5263 3.006003 GGCCAACAATTAACGGGAAAAGA 59.994 43.478 0.00 0.00 0.00 2.52
3473 5264 3.243907 TGGCCAACAATTAACGGGAAAAG 60.244 43.478 0.61 0.00 0.00 2.27
3474 5265 2.698797 TGGCCAACAATTAACGGGAAAA 59.301 40.909 0.61 0.00 0.00 2.29
3475 5266 2.297597 CTGGCCAACAATTAACGGGAAA 59.702 45.455 7.01 0.00 0.00 3.13
3476 5267 1.889829 CTGGCCAACAATTAACGGGAA 59.110 47.619 7.01 0.00 0.00 3.97
3477 5268 1.202952 ACTGGCCAACAATTAACGGGA 60.203 47.619 7.01 0.00 0.00 5.14
3478 5269 1.067915 CACTGGCCAACAATTAACGGG 60.068 52.381 7.01 0.00 0.00 5.28
3479 5270 1.611491 ACACTGGCCAACAATTAACGG 59.389 47.619 7.01 0.00 0.00 4.44
3480 5271 4.695217 ATACACTGGCCAACAATTAACG 57.305 40.909 7.01 0.00 0.00 3.18
3481 5272 6.367695 GGAAAATACACTGGCCAACAATTAAC 59.632 38.462 7.01 2.98 0.00 2.01
3482 5273 6.459923 GGAAAATACACTGGCCAACAATTAA 58.540 36.000 7.01 0.00 0.00 1.40
3483 5274 5.046950 GGGAAAATACACTGGCCAACAATTA 60.047 40.000 7.01 0.00 0.00 1.40
3484 5275 4.262851 GGGAAAATACACTGGCCAACAATT 60.263 41.667 7.01 1.45 0.00 2.32
3485 5276 3.260632 GGGAAAATACACTGGCCAACAAT 59.739 43.478 7.01 0.00 0.00 2.71
3486 5277 2.630580 GGGAAAATACACTGGCCAACAA 59.369 45.455 7.01 0.00 0.00 2.83
3487 5278 2.243810 GGGAAAATACACTGGCCAACA 58.756 47.619 7.01 0.00 0.00 3.33
3488 5279 1.201414 CGGGAAAATACACTGGCCAAC 59.799 52.381 7.01 0.00 0.00 3.77
3489 5280 1.540267 CGGGAAAATACACTGGCCAA 58.460 50.000 7.01 0.00 0.00 4.52
3490 5281 0.963355 GCGGGAAAATACACTGGCCA 60.963 55.000 4.71 4.71 0.00 5.36
3491 5282 1.663379 GGCGGGAAAATACACTGGCC 61.663 60.000 0.00 0.00 0.00 5.36
3492 5283 0.963355 TGGCGGGAAAATACACTGGC 60.963 55.000 0.00 0.00 36.67 4.85
3493 5284 1.201414 GTTGGCGGGAAAATACACTGG 59.799 52.381 0.00 0.00 0.00 4.00
3494 5285 1.201414 GGTTGGCGGGAAAATACACTG 59.799 52.381 0.00 0.00 0.00 3.66
3495 5286 1.541379 GGTTGGCGGGAAAATACACT 58.459 50.000 0.00 0.00 0.00 3.55
3496 5287 0.528924 GGGTTGGCGGGAAAATACAC 59.471 55.000 0.00 0.00 0.00 2.90
3497 5288 0.612453 GGGGTTGGCGGGAAAATACA 60.612 55.000 0.00 0.00 0.00 2.29
3498 5289 0.323999 AGGGGTTGGCGGGAAAATAC 60.324 55.000 0.00 0.00 0.00 1.89
3499 5290 0.410270 AAGGGGTTGGCGGGAAAATA 59.590 50.000 0.00 0.00 0.00 1.40
3500 5291 0.902984 GAAGGGGTTGGCGGGAAAAT 60.903 55.000 0.00 0.00 0.00 1.82
3501 5292 1.532078 GAAGGGGTTGGCGGGAAAA 60.532 57.895 0.00 0.00 0.00 2.29
3502 5293 2.116556 GAAGGGGTTGGCGGGAAA 59.883 61.111 0.00 0.00 0.00 3.13
3503 5294 3.974293 GGAAGGGGTTGGCGGGAA 61.974 66.667 0.00 0.00 0.00 3.97
3515 5306 4.653888 AAACGGGTGGCGGGAAGG 62.654 66.667 0.00 0.00 0.00 3.46
3516 5307 3.053896 GAAACGGGTGGCGGGAAG 61.054 66.667 0.00 0.00 0.00 3.46
3517 5308 4.646877 GGAAACGGGTGGCGGGAA 62.647 66.667 0.00 0.00 0.00 3.97
3523 5314 4.958897 TTGGCGGGAAACGGGTGG 62.959 66.667 0.00 0.00 44.51 4.61
3524 5315 3.666253 GTTGGCGGGAAACGGGTG 61.666 66.667 0.00 0.00 44.51 4.61
3525 5316 4.960866 GGTTGGCGGGAAACGGGT 62.961 66.667 0.00 0.00 44.51 5.28
3529 5320 1.812686 GAAAGGGGTTGGCGGGAAAC 61.813 60.000 0.00 0.00 0.00 2.78
3530 5321 1.532078 GAAAGGGGTTGGCGGGAAA 60.532 57.895 0.00 0.00 0.00 3.13
3531 5322 2.116556 GAAAGGGGTTGGCGGGAA 59.883 61.111 0.00 0.00 0.00 3.97
3532 5323 3.974293 GGAAAGGGGTTGGCGGGA 61.974 66.667 0.00 0.00 0.00 5.14
3536 5327 4.986708 TGGCGGAAAGGGGTTGGC 62.987 66.667 0.00 0.00 0.00 4.52
3537 5328 2.989253 GTGGCGGAAAGGGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
3538 5329 2.989253 GGTGGCGGAAAGGGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
3539 5330 4.295199 GGGTGGCGGAAAGGGGTT 62.295 66.667 0.00 0.00 0.00 4.11
3541 5332 3.600410 AATGGGTGGCGGAAAGGGG 62.600 63.158 0.00 0.00 0.00 4.79
3542 5333 1.604147 GAAATGGGTGGCGGAAAGGG 61.604 60.000 0.00 0.00 0.00 3.95
3543 5334 1.604147 GGAAATGGGTGGCGGAAAGG 61.604 60.000 0.00 0.00 0.00 3.11
3544 5335 1.604147 GGGAAATGGGTGGCGGAAAG 61.604 60.000 0.00 0.00 0.00 2.62
3545 5336 1.608046 GGGAAATGGGTGGCGGAAA 60.608 57.895 0.00 0.00 0.00 3.13
3546 5337 2.036572 GGGAAATGGGTGGCGGAA 59.963 61.111 0.00 0.00 0.00 4.30
3547 5338 4.418328 CGGGAAATGGGTGGCGGA 62.418 66.667 0.00 0.00 0.00 5.54
3551 5342 3.068064 GTGGCGGGAAATGGGTGG 61.068 66.667 0.00 0.00 0.00 4.61
3552 5343 3.068064 GGTGGCGGGAAATGGGTG 61.068 66.667 0.00 0.00 0.00 4.61
3553 5344 4.376170 GGGTGGCGGGAAATGGGT 62.376 66.667 0.00 0.00 0.00 4.51
3555 5346 4.733542 ACGGGTGGCGGGAAATGG 62.734 66.667 0.00 0.00 0.00 3.16
3556 5347 2.207788 GAAACGGGTGGCGGGAAATG 62.208 60.000 0.00 0.00 0.00 2.32
3557 5348 1.974875 GAAACGGGTGGCGGGAAAT 60.975 57.895 0.00 0.00 0.00 2.17
3558 5349 2.595172 GAAACGGGTGGCGGGAAA 60.595 61.111 0.00 0.00 0.00 3.13
3559 5350 4.646877 GGAAACGGGTGGCGGGAA 62.647 66.667 0.00 0.00 0.00 3.97
3565 5356 4.958897 TTGGCGGGAAACGGGTGG 62.959 66.667 0.00 0.00 44.51 4.61
3566 5357 3.666253 GTTGGCGGGAAACGGGTG 61.666 66.667 0.00 0.00 44.51 4.61
3567 5358 4.960866 GGTTGGCGGGAAACGGGT 62.961 66.667 0.00 0.00 44.51 5.28
3571 5362 2.203582 AAGGGGTTGGCGGGAAAC 60.204 61.111 0.00 0.00 0.00 2.78
3572 5363 2.116556 GAAGGGGTTGGCGGGAAA 59.883 61.111 0.00 0.00 0.00 3.13
3573 5364 3.974293 GGAAGGGGTTGGCGGGAA 61.974 66.667 0.00 0.00 0.00 3.97
3579 5370 3.600410 AATGGCGGGAAGGGGTTGG 62.600 63.158 0.00 0.00 0.00 3.77
3580 5371 1.191489 AAAATGGCGGGAAGGGGTTG 61.191 55.000 0.00 0.00 0.00 3.77
3581 5372 0.902984 GAAAATGGCGGGAAGGGGTT 60.903 55.000 0.00 0.00 0.00 4.11
3582 5373 1.304962 GAAAATGGCGGGAAGGGGT 60.305 57.895 0.00 0.00 0.00 4.95
3583 5374 1.000359 AGAAAATGGCGGGAAGGGG 60.000 57.895 0.00 0.00 0.00 4.79
3584 5375 1.037579 GGAGAAAATGGCGGGAAGGG 61.038 60.000 0.00 0.00 0.00 3.95
3585 5376 0.034089 AGGAGAAAATGGCGGGAAGG 60.034 55.000 0.00 0.00 0.00 3.46
3586 5377 1.340017 TGAGGAGAAAATGGCGGGAAG 60.340 52.381 0.00 0.00 0.00 3.46
3587 5378 0.695924 TGAGGAGAAAATGGCGGGAA 59.304 50.000 0.00 0.00 0.00 3.97
3588 5379 0.253044 CTGAGGAGAAAATGGCGGGA 59.747 55.000 0.00 0.00 0.00 5.14
3589 5380 0.035056 ACTGAGGAGAAAATGGCGGG 60.035 55.000 0.00 0.00 0.00 6.13
3590 5381 2.280628 GTACTGAGGAGAAAATGGCGG 58.719 52.381 0.00 0.00 0.00 6.13
3591 5382 2.972625 TGTACTGAGGAGAAAATGGCG 58.027 47.619 0.00 0.00 0.00 5.69
3592 5383 8.677148 TTTATATGTACTGAGGAGAAAATGGC 57.323 34.615 0.00 0.00 0.00 4.40
3596 5387 9.457436 GGGTTTTTATATGTACTGAGGAGAAAA 57.543 33.333 0.00 0.00 0.00 2.29
3597 5388 8.050930 GGGGTTTTTATATGTACTGAGGAGAAA 58.949 37.037 0.00 0.00 0.00 2.52
3598 5389 7.404980 AGGGGTTTTTATATGTACTGAGGAGAA 59.595 37.037 0.00 0.00 0.00 2.87
3599 5390 6.906901 AGGGGTTTTTATATGTACTGAGGAGA 59.093 38.462 0.00 0.00 0.00 3.71
3600 5391 7.138054 AGGGGTTTTTATATGTACTGAGGAG 57.862 40.000 0.00 0.00 0.00 3.69
3601 5392 7.183112 TGAAGGGGTTTTTATATGTACTGAGGA 59.817 37.037 0.00 0.00 0.00 3.71
3602 5393 7.343357 TGAAGGGGTTTTTATATGTACTGAGG 58.657 38.462 0.00 0.00 0.00 3.86
3603 5394 7.499232 CCTGAAGGGGTTTTTATATGTACTGAG 59.501 40.741 0.00 0.00 0.00 3.35
3604 5395 7.343357 CCTGAAGGGGTTTTTATATGTACTGA 58.657 38.462 0.00 0.00 0.00 3.41
3605 5396 6.039382 GCCTGAAGGGGTTTTTATATGTACTG 59.961 42.308 0.00 0.00 35.18 2.74
3606 5397 6.127101 GCCTGAAGGGGTTTTTATATGTACT 58.873 40.000 0.00 0.00 35.18 2.73
3607 5398 5.008316 CGCCTGAAGGGGTTTTTATATGTAC 59.992 44.000 5.27 0.00 42.54 2.90
3608 5399 5.127491 CGCCTGAAGGGGTTTTTATATGTA 58.873 41.667 5.27 0.00 42.54 2.29
3609 5400 3.951680 CGCCTGAAGGGGTTTTTATATGT 59.048 43.478 5.27 0.00 42.54 2.29
3610 5401 4.568152 CGCCTGAAGGGGTTTTTATATG 57.432 45.455 5.27 0.00 42.54 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.