Multiple sequence alignment - TraesCS2B01G492500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G492500 chr2B 100.000 2894 0 0 1 2894 690684084 690681191 0.000000e+00 5345.0
1 TraesCS2B01G492500 chr2B 92.994 2341 155 7 555 2893 690662519 690660186 0.000000e+00 3406.0
2 TraesCS2B01G492500 chr2B 94.212 2177 85 11 741 2894 690715506 690713348 0.000000e+00 3284.0
3 TraesCS2B01G492500 chr2B 98.611 144 2 0 241 384 391164537 391164394 3.700000e-64 255.0
4 TraesCS2B01G492500 chr2B 90.476 42 4 0 1 42 771489449 771489408 4.030000e-04 56.5
5 TraesCS2B01G492500 chr2A 93.378 2522 145 16 391 2894 712821209 712818692 0.000000e+00 3712.0
6 TraesCS2B01G492500 chr2A 93.275 2528 147 17 385 2894 712832468 712829946 0.000000e+00 3705.0
7 TraesCS2B01G492500 chr2A 93.447 2167 120 14 739 2894 712843112 712840957 0.000000e+00 3195.0
8 TraesCS2B01G492500 chr2A 94.993 1418 66 3 852 2268 712838109 712836696 0.000000e+00 2220.0
9 TraesCS2B01G492500 chr2A 94.922 1418 67 3 852 2268 712826859 712825446 0.000000e+00 2215.0
10 TraesCS2B01G492500 chr2A 86.769 650 60 6 2260 2894 712825403 712824765 0.000000e+00 701.0
11 TraesCS2B01G492500 chr2A 91.566 83 7 0 474 556 698694293 698694211 6.550000e-22 115.0
12 TraesCS2B01G492500 chr2D 93.149 2058 110 15 831 2883 574442130 574440099 0.000000e+00 2990.0
13 TraesCS2B01G492500 chr2D 92.677 1898 90 18 383 2268 574448629 574446769 0.000000e+00 2689.0
14 TraesCS2B01G492500 chr2D 87.403 643 56 6 2267 2894 574446720 574446088 0.000000e+00 715.0
15 TraesCS2B01G492500 chr2D 87.654 486 44 6 383 852 574443258 574442773 4.210000e-153 551.0
16 TraesCS2B01G492500 chrUn 94.169 1492 80 7 1404 2891 392993248 392994736 0.000000e+00 2266.0
17 TraesCS2B01G492500 chrUn 93.670 1169 67 7 1727 2891 427623288 427624453 0.000000e+00 1742.0
18 TraesCS2B01G492500 chrUn 99.291 141 1 0 102 242 86494255 86494115 3.700000e-64 255.0
19 TraesCS2B01G492500 chrUn 99.291 141 1 0 102 242 186175216 186175356 3.700000e-64 255.0
20 TraesCS2B01G492500 chrUn 99.291 141 1 0 241 381 186204892 186205032 3.700000e-64 255.0
21 TraesCS2B01G492500 chrUn 99.291 141 1 0 102 242 389751022 389751162 3.700000e-64 255.0
22 TraesCS2B01G492500 chrUn 99.291 141 1 0 102 242 400145770 400145910 3.700000e-64 255.0
23 TraesCS2B01G492500 chr7B 84.859 284 39 3 989 1268 7311561 7311278 1.700000e-72 283.0
24 TraesCS2B01G492500 chr7B 90.588 85 8 0 474 558 711234236 711234320 2.360000e-21 113.0
25 TraesCS2B01G492500 chr7B 75.776 161 25 7 407 556 398096065 398096222 5.170000e-08 69.4
26 TraesCS2B01G492500 chr7D 98.611 144 2 0 241 384 203503531 203503388 3.700000e-64 255.0
27 TraesCS2B01G492500 chr7A 98.611 144 2 0 241 384 60282841 60282698 3.700000e-64 255.0
28 TraesCS2B01G492500 chr6B 99.291 141 1 0 241 381 202290070 202290210 3.700000e-64 255.0
29 TraesCS2B01G492500 chr5B 99.291 141 1 0 102 242 130553216 130553076 3.700000e-64 255.0
30 TraesCS2B01G492500 chr5B 99.291 141 1 0 102 242 533080451 533080311 3.700000e-64 255.0
31 TraesCS2B01G492500 chr5A 99.291 141 1 0 241 381 238819276 238819416 3.700000e-64 255.0
32 TraesCS2B01G492500 chr5A 90.909 88 6 2 474 559 422030556 422030643 1.820000e-22 117.0
33 TraesCS2B01G492500 chr3D 99.291 141 1 0 102 242 202618147 202618007 3.700000e-64 255.0
34 TraesCS2B01G492500 chr3B 99.291 141 1 0 102 242 92245115 92245255 3.700000e-64 255.0
35 TraesCS2B01G492500 chr3B 100.000 30 0 0 1 30 39533287 39533258 4.030000e-04 56.5
36 TraesCS2B01G492500 chr3B 100.000 30 0 0 1 30 39534026 39533997 4.030000e-04 56.5
37 TraesCS2B01G492500 chr3B 100.000 30 0 0 1 30 39534763 39534734 4.030000e-04 56.5
38 TraesCS2B01G492500 chr3B 100.000 30 0 0 1 30 39535502 39535473 4.030000e-04 56.5
39 TraesCS2B01G492500 chr3B 100.000 30 0 0 1 30 39537685 39537656 4.030000e-04 56.5
40 TraesCS2B01G492500 chr3B 100.000 30 0 0 1 30 39538424 39538395 4.030000e-04 56.5
41 TraesCS2B01G492500 chr3B 100.000 30 0 0 1 30 39540035 39540006 4.030000e-04 56.5
42 TraesCS2B01G492500 chr1D 99.291 141 1 0 241 381 43233183 43233323 3.700000e-64 255.0
43 TraesCS2B01G492500 chr1D 99.291 141 1 0 102 242 493805254 493805394 3.700000e-64 255.0
44 TraesCS2B01G492500 chr1A 99.291 141 1 0 241 381 498687699 498687839 3.700000e-64 255.0
45 TraesCS2B01G492500 chr4A 99.281 139 1 0 243 381 246655097 246655235 4.790000e-63 252.0
46 TraesCS2B01G492500 chr5D 80.473 169 20 5 407 563 377988163 377987996 1.820000e-22 117.0
47 TraesCS2B01G492500 chr6A 91.566 83 7 0 474 556 4869123 4869205 6.550000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G492500 chr2B 690681191 690684084 2893 True 5345.00 5345 100.00000 1 2894 1 chr2B.!!$R3 2893
1 TraesCS2B01G492500 chr2B 690660186 690662519 2333 True 3406.00 3406 92.99400 555 2893 1 chr2B.!!$R2 2338
2 TraesCS2B01G492500 chr2B 690713348 690715506 2158 True 3284.00 3284 94.21200 741 2894 1 chr2B.!!$R4 2153
3 TraesCS2B01G492500 chr2A 712836696 712843112 6416 True 2707.50 3195 94.22000 739 2894 2 chr2A.!!$R3 2155
4 TraesCS2B01G492500 chr2A 712818692 712832468 13776 True 2583.25 3712 92.08600 385 2894 4 chr2A.!!$R2 2509
5 TraesCS2B01G492500 chr2D 574440099 574448629 8530 True 1736.25 2990 90.22075 383 2894 4 chr2D.!!$R1 2511
6 TraesCS2B01G492500 chrUn 392993248 392994736 1488 False 2266.00 2266 94.16900 1404 2891 1 chrUn.!!$F4 1487
7 TraesCS2B01G492500 chrUn 427623288 427624453 1165 False 1742.00 1742 93.67000 1727 2891 1 chrUn.!!$F6 1164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.091678 CGTACACGCGCATACGTTTT 59.908 50.0 25.98 0.0 45.75 2.43 F
333 334 0.107410 TATACCTGGGTGGCAAAGCG 60.107 55.0 2.07 0.0 40.22 4.68 F
348 349 0.182775 AAGCGAAGTTTCTGGTGGGT 59.817 50.0 0.00 0.0 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1164 1194 0.324943 CGAAGGAGGAAAGGAAGGCA 59.675 55.000 0.0 0.0 0.00 4.75 R
1396 1426 2.125512 AGGCCGTGAAGATGACGC 60.126 61.111 0.0 0.0 35.45 5.19 R
2499 14488 5.368145 TCATGTTAGCCACCATCATACTTC 58.632 41.667 0.0 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.878086 ATGCGTGCGTTTATAAGGATG 57.122 42.857 0.00 0.00 0.00 3.51
21 22 2.894902 TGCGTGCGTTTATAAGGATGA 58.105 42.857 0.00 0.00 0.00 2.92
22 23 2.863740 TGCGTGCGTTTATAAGGATGAG 59.136 45.455 0.00 0.00 0.00 2.90
23 24 2.864343 GCGTGCGTTTATAAGGATGAGT 59.136 45.455 0.00 0.00 0.00 3.41
24 25 3.302480 GCGTGCGTTTATAAGGATGAGTG 60.302 47.826 0.00 0.00 0.00 3.51
25 26 3.863424 CGTGCGTTTATAAGGATGAGTGT 59.137 43.478 0.00 0.00 0.00 3.55
26 27 5.038683 CGTGCGTTTATAAGGATGAGTGTA 58.961 41.667 0.00 0.00 0.00 2.90
27 28 5.690409 CGTGCGTTTATAAGGATGAGTGTAT 59.310 40.000 0.00 0.00 0.00 2.29
28 29 6.859508 CGTGCGTTTATAAGGATGAGTGTATA 59.140 38.462 0.00 0.00 0.00 1.47
29 30 7.541091 CGTGCGTTTATAAGGATGAGTGTATAT 59.459 37.037 0.00 0.00 0.00 0.86
30 31 8.648097 GTGCGTTTATAAGGATGAGTGTATATG 58.352 37.037 0.00 0.00 0.00 1.78
31 32 7.330946 TGCGTTTATAAGGATGAGTGTATATGC 59.669 37.037 0.00 0.00 0.00 3.14
32 33 7.462856 GCGTTTATAAGGATGAGTGTATATGCG 60.463 40.741 0.00 0.00 0.00 4.73
33 34 7.541091 CGTTTATAAGGATGAGTGTATATGCGT 59.459 37.037 0.00 0.00 0.00 5.24
34 35 9.850628 GTTTATAAGGATGAGTGTATATGCGTA 57.149 33.333 0.00 0.00 0.00 4.42
35 36 9.850628 TTTATAAGGATGAGTGTATATGCGTAC 57.149 33.333 0.00 0.00 0.00 3.67
36 37 5.784578 AAGGATGAGTGTATATGCGTACA 57.215 39.130 0.00 0.00 32.43 2.90
37 38 5.984695 AGGATGAGTGTATATGCGTACAT 57.015 39.130 0.00 0.00 36.98 2.29
38 39 7.462571 AAGGATGAGTGTATATGCGTACATA 57.537 36.000 0.00 0.00 42.85 2.29
40 41 7.484140 AGGATGAGTGTATATGCGTACATATG 58.516 38.462 0.00 0.00 46.65 1.78
41 42 7.339466 AGGATGAGTGTATATGCGTACATATGA 59.661 37.037 10.38 0.00 46.65 2.15
42 43 7.973944 GGATGAGTGTATATGCGTACATATGAA 59.026 37.037 10.38 0.00 46.65 2.57
43 44 9.521503 GATGAGTGTATATGCGTACATATGAAT 57.478 33.333 10.38 0.00 46.65 2.57
44 45 8.687824 TGAGTGTATATGCGTACATATGAATG 57.312 34.615 10.38 0.00 46.65 2.67
45 46 8.303876 TGAGTGTATATGCGTACATATGAATGT 58.696 33.333 10.38 0.00 46.65 2.71
46 47 8.689251 AGTGTATATGCGTACATATGAATGTC 57.311 34.615 10.38 0.00 46.65 3.06
47 48 8.523658 AGTGTATATGCGTACATATGAATGTCT 58.476 33.333 10.38 0.00 46.65 3.41
48 49 8.587111 GTGTATATGCGTACATATGAATGTCTG 58.413 37.037 10.38 0.00 46.65 3.51
49 50 4.997905 ATGCGTACATATGAATGTCTGC 57.002 40.909 10.38 4.10 42.92 4.26
50 51 3.130633 TGCGTACATATGAATGTCTGCC 58.869 45.455 10.38 0.00 42.92 4.85
51 52 3.181466 TGCGTACATATGAATGTCTGCCT 60.181 43.478 10.38 0.00 42.92 4.75
52 53 3.430218 GCGTACATATGAATGTCTGCCTC 59.570 47.826 10.38 0.00 42.92 4.70
53 54 4.797604 GCGTACATATGAATGTCTGCCTCT 60.798 45.833 10.38 0.00 42.92 3.69
54 55 5.564848 GCGTACATATGAATGTCTGCCTCTA 60.565 44.000 10.38 0.00 42.92 2.43
55 56 6.625362 CGTACATATGAATGTCTGCCTCTAT 58.375 40.000 10.38 0.00 42.92 1.98
56 57 7.628580 GCGTACATATGAATGTCTGCCTCTATA 60.629 40.741 10.38 0.00 42.92 1.31
57 58 7.698550 CGTACATATGAATGTCTGCCTCTATAC 59.301 40.741 10.38 0.00 42.92 1.47
58 59 7.789202 ACATATGAATGTCTGCCTCTATACT 57.211 36.000 10.38 0.00 42.92 2.12
59 60 8.885693 ACATATGAATGTCTGCCTCTATACTA 57.114 34.615 10.38 0.00 42.92 1.82
60 61 9.314133 ACATATGAATGTCTGCCTCTATACTAA 57.686 33.333 10.38 0.00 42.92 2.24
63 64 7.898014 TGAATGTCTGCCTCTATACTAAAGA 57.102 36.000 0.00 0.00 0.00 2.52
64 65 8.306313 TGAATGTCTGCCTCTATACTAAAGAA 57.694 34.615 0.00 0.00 0.00 2.52
65 66 8.758829 TGAATGTCTGCCTCTATACTAAAGAAA 58.241 33.333 0.00 0.00 0.00 2.52
66 67 9.255304 GAATGTCTGCCTCTATACTAAAGAAAG 57.745 37.037 0.00 0.00 0.00 2.62
67 68 7.956328 TGTCTGCCTCTATACTAAAGAAAGA 57.044 36.000 0.00 0.00 0.00 2.52
68 69 7.773149 TGTCTGCCTCTATACTAAAGAAAGAC 58.227 38.462 0.00 0.00 33.17 3.01
69 70 6.913673 GTCTGCCTCTATACTAAAGAAAGACG 59.086 42.308 0.00 0.00 0.00 4.18
70 71 6.827251 TCTGCCTCTATACTAAAGAAAGACGA 59.173 38.462 0.00 0.00 0.00 4.20
71 72 7.338703 TCTGCCTCTATACTAAAGAAAGACGAA 59.661 37.037 0.00 0.00 0.00 3.85
72 73 7.481642 TGCCTCTATACTAAAGAAAGACGAAG 58.518 38.462 0.00 0.00 0.00 3.79
73 74 7.338703 TGCCTCTATACTAAAGAAAGACGAAGA 59.661 37.037 0.00 0.00 0.00 2.87
74 75 7.858879 GCCTCTATACTAAAGAAAGACGAAGAG 59.141 40.741 0.00 0.00 0.00 2.85
75 76 8.347035 CCTCTATACTAAAGAAAGACGAAGAGG 58.653 40.741 0.00 0.00 39.30 3.69
76 77 7.705214 TCTATACTAAAGAAAGACGAAGAGGC 58.295 38.462 0.00 0.00 0.00 4.70
77 78 3.576648 ACTAAAGAAAGACGAAGAGGCG 58.423 45.455 0.00 0.00 37.29 5.52
78 79 2.814280 AAAGAAAGACGAAGAGGCGA 57.186 45.000 0.00 0.00 34.83 5.54
79 80 2.814280 AAGAAAGACGAAGAGGCGAA 57.186 45.000 0.00 0.00 34.83 4.70
80 81 2.814280 AGAAAGACGAAGAGGCGAAA 57.186 45.000 0.00 0.00 34.83 3.46
81 82 3.107642 AGAAAGACGAAGAGGCGAAAA 57.892 42.857 0.00 0.00 34.83 2.29
82 83 3.665190 AGAAAGACGAAGAGGCGAAAAT 58.335 40.909 0.00 0.00 34.83 1.82
83 84 4.817517 AGAAAGACGAAGAGGCGAAAATA 58.182 39.130 0.00 0.00 34.83 1.40
84 85 5.235516 AGAAAGACGAAGAGGCGAAAATAA 58.764 37.500 0.00 0.00 34.83 1.40
85 86 5.699458 AGAAAGACGAAGAGGCGAAAATAAA 59.301 36.000 0.00 0.00 34.83 1.40
86 87 4.923264 AGACGAAGAGGCGAAAATAAAC 57.077 40.909 0.00 0.00 34.83 2.01
87 88 3.683340 AGACGAAGAGGCGAAAATAAACC 59.317 43.478 0.00 0.00 34.83 3.27
88 89 2.745821 ACGAAGAGGCGAAAATAAACCC 59.254 45.455 0.00 0.00 34.83 4.11
89 90 2.096980 CGAAGAGGCGAAAATAAACCCC 59.903 50.000 0.00 0.00 0.00 4.95
90 91 3.353557 GAAGAGGCGAAAATAAACCCCT 58.646 45.455 0.00 0.00 0.00 4.79
91 92 4.520179 GAAGAGGCGAAAATAAACCCCTA 58.480 43.478 0.00 0.00 0.00 3.53
92 93 4.579647 AGAGGCGAAAATAAACCCCTAA 57.420 40.909 0.00 0.00 0.00 2.69
93 94 4.524053 AGAGGCGAAAATAAACCCCTAAG 58.476 43.478 0.00 0.00 0.00 2.18
94 95 4.226620 AGAGGCGAAAATAAACCCCTAAGA 59.773 41.667 0.00 0.00 0.00 2.10
95 96 4.925836 AGGCGAAAATAAACCCCTAAGAA 58.074 39.130 0.00 0.00 0.00 2.52
96 97 5.326900 AGGCGAAAATAAACCCCTAAGAAA 58.673 37.500 0.00 0.00 0.00 2.52
97 98 5.184479 AGGCGAAAATAAACCCCTAAGAAAC 59.816 40.000 0.00 0.00 0.00 2.78
98 99 5.047872 GGCGAAAATAAACCCCTAAGAAACA 60.048 40.000 0.00 0.00 0.00 2.83
99 100 5.860182 GCGAAAATAAACCCCTAAGAAACAC 59.140 40.000 0.00 0.00 0.00 3.32
100 101 6.081693 CGAAAATAAACCCCTAAGAAACACG 58.918 40.000 0.00 0.00 0.00 4.49
101 102 5.970317 AAATAAACCCCTAAGAAACACGG 57.030 39.130 0.00 0.00 0.00 4.94
102 103 1.612676 AAACCCCTAAGAAACACGGC 58.387 50.000 0.00 0.00 0.00 5.68
103 104 0.604511 AACCCCTAAGAAACACGGCG 60.605 55.000 4.80 4.80 0.00 6.46
104 105 2.396157 CCCCTAAGAAACACGGCGC 61.396 63.158 6.90 0.00 0.00 6.53
105 106 2.736682 CCCTAAGAAACACGGCGCG 61.737 63.158 6.90 0.00 0.00 6.86
106 107 1.735198 CCTAAGAAACACGGCGCGA 60.735 57.895 12.10 0.00 0.00 5.87
107 108 1.286354 CCTAAGAAACACGGCGCGAA 61.286 55.000 12.10 0.00 0.00 4.70
108 109 0.509499 CTAAGAAACACGGCGCGAAA 59.491 50.000 12.10 0.00 0.00 3.46
109 110 0.509499 TAAGAAACACGGCGCGAAAG 59.491 50.000 12.10 1.52 0.00 2.62
125 126 3.869473 AAGCCGTTGCGCTTCCGTA 62.869 57.895 9.73 0.00 46.06 4.02
126 127 4.143363 GCCGTTGCGCTTCCGTAC 62.143 66.667 9.73 0.00 36.67 3.67
127 128 2.735478 CCGTTGCGCTTCCGTACA 60.735 61.111 9.73 0.00 36.67 2.90
128 129 2.468532 CGTTGCGCTTCCGTACAC 59.531 61.111 9.73 0.00 36.67 2.90
129 130 2.468532 GTTGCGCTTCCGTACACG 59.531 61.111 9.73 0.00 36.67 4.49
134 135 3.186047 GCTTCCGTACACGCGCAT 61.186 61.111 5.73 0.00 38.18 4.73
135 136 1.874915 GCTTCCGTACACGCGCATA 60.875 57.895 5.73 0.00 38.18 3.14
136 137 1.915093 CTTCCGTACACGCGCATAC 59.085 57.895 5.73 8.27 38.18 2.39
137 138 1.794455 CTTCCGTACACGCGCATACG 61.794 60.000 26.86 26.86 42.97 3.06
139 140 2.153945 CCGTACACGCGCATACGTT 61.154 57.895 29.43 0.00 45.75 3.99
140 141 1.676438 CCGTACACGCGCATACGTTT 61.676 55.000 29.43 6.18 45.75 3.60
141 142 0.091678 CGTACACGCGCATACGTTTT 59.908 50.000 25.98 0.00 45.75 2.43
142 143 1.777510 GTACACGCGCATACGTTTTC 58.222 50.000 5.73 0.00 45.75 2.29
143 144 1.387756 GTACACGCGCATACGTTTTCT 59.612 47.619 5.73 0.00 45.75 2.52
144 145 0.863144 ACACGCGCATACGTTTTCTT 59.137 45.000 5.73 0.00 45.75 2.52
145 146 1.238281 CACGCGCATACGTTTTCTTG 58.762 50.000 5.73 0.00 45.75 3.02
146 147 0.452122 ACGCGCATACGTTTTCTTGC 60.452 50.000 5.73 0.00 45.75 4.01
147 148 0.179225 CGCGCATACGTTTTCTTGCT 60.179 50.000 8.75 0.00 42.83 3.91
148 149 1.250476 GCGCATACGTTTTCTTGCTG 58.750 50.000 0.30 0.00 42.83 4.41
149 150 1.882198 CGCATACGTTTTCTTGCTGG 58.118 50.000 0.00 0.00 32.97 4.85
150 151 1.465689 CGCATACGTTTTCTTGCTGGG 60.466 52.381 0.00 0.00 32.97 4.45
151 152 1.135402 GCATACGTTTTCTTGCTGGGG 60.135 52.381 0.00 0.00 32.41 4.96
152 153 1.135402 CATACGTTTTCTTGCTGGGGC 60.135 52.381 0.00 0.00 39.26 5.80
153 154 1.231958 TACGTTTTCTTGCTGGGGCG 61.232 55.000 0.00 0.00 42.25 6.13
154 155 2.650778 GTTTTCTTGCTGGGGCGG 59.349 61.111 0.00 0.00 42.25 6.13
155 156 1.901464 GTTTTCTTGCTGGGGCGGA 60.901 57.895 0.00 0.00 42.25 5.54
156 157 1.901464 TTTTCTTGCTGGGGCGGAC 60.901 57.895 0.00 0.00 42.25 4.79
157 158 2.632602 TTTTCTTGCTGGGGCGGACA 62.633 55.000 0.00 0.00 42.25 4.02
158 159 3.842925 TTCTTGCTGGGGCGGACAC 62.843 63.158 0.00 0.00 42.25 3.67
163 164 4.096003 CTGGGGCGGACACGGATT 62.096 66.667 0.00 0.00 41.36 3.01
164 165 3.622060 CTGGGGCGGACACGGATTT 62.622 63.158 0.00 0.00 41.36 2.17
165 166 2.822701 GGGGCGGACACGGATTTC 60.823 66.667 0.00 0.00 41.36 2.17
166 167 2.267961 GGGCGGACACGGATTTCT 59.732 61.111 0.00 0.00 41.36 2.52
167 168 1.814169 GGGCGGACACGGATTTCTC 60.814 63.158 0.00 0.00 41.36 2.87
168 169 1.218316 GGCGGACACGGATTTCTCT 59.782 57.895 0.00 0.00 41.36 3.10
169 170 0.806492 GGCGGACACGGATTTCTCTC 60.806 60.000 0.00 0.00 41.36 3.20
170 171 0.173708 GCGGACACGGATTTCTCTCT 59.826 55.000 0.00 0.00 41.36 3.10
171 172 1.404391 GCGGACACGGATTTCTCTCTA 59.596 52.381 0.00 0.00 41.36 2.43
172 173 2.159282 GCGGACACGGATTTCTCTCTAA 60.159 50.000 0.00 0.00 41.36 2.10
173 174 3.675228 GCGGACACGGATTTCTCTCTAAA 60.675 47.826 0.00 0.00 41.36 1.85
174 175 4.106197 CGGACACGGATTTCTCTCTAAAG 58.894 47.826 0.00 0.00 36.18 1.85
175 176 4.142447 CGGACACGGATTTCTCTCTAAAGA 60.142 45.833 0.00 0.00 36.18 2.52
176 177 5.103687 GGACACGGATTTCTCTCTAAAGAC 58.896 45.833 0.00 0.00 0.00 3.01
177 178 4.734917 ACACGGATTTCTCTCTAAAGACG 58.265 43.478 0.00 0.00 0.00 4.18
178 179 4.458295 ACACGGATTTCTCTCTAAAGACGA 59.542 41.667 0.00 0.00 0.00 4.20
179 180 5.048224 ACACGGATTTCTCTCTAAAGACGAA 60.048 40.000 0.00 0.00 0.00 3.85
180 181 5.513495 CACGGATTTCTCTCTAAAGACGAAG 59.487 44.000 0.00 0.00 0.00 3.79
181 182 5.415077 ACGGATTTCTCTCTAAAGACGAAGA 59.585 40.000 0.00 0.00 0.00 2.87
182 183 6.072064 ACGGATTTCTCTCTAAAGACGAAGAA 60.072 38.462 0.00 0.00 0.00 2.52
183 184 6.807230 CGGATTTCTCTCTAAAGACGAAGAAA 59.193 38.462 0.00 0.00 30.87 2.52
184 185 7.328737 CGGATTTCTCTCTAAAGACGAAGAAAA 59.671 37.037 0.00 0.00 30.40 2.29
185 186 8.989980 GGATTTCTCTCTAAAGACGAAGAAAAA 58.010 33.333 0.00 0.00 30.40 1.94
187 188 9.765795 ATTTCTCTCTAAAGACGAAGAAAAAGA 57.234 29.630 0.00 0.00 30.40 2.52
188 189 9.595823 TTTCTCTCTAAAGACGAAGAAAAAGAA 57.404 29.630 0.00 0.00 0.00 2.52
189 190 8.804688 TCTCTCTAAAGACGAAGAAAAAGAAG 57.195 34.615 0.00 0.00 0.00 2.85
190 191 8.414778 TCTCTCTAAAGACGAAGAAAAAGAAGT 58.585 33.333 0.00 0.00 0.00 3.01
191 192 8.354011 TCTCTAAAGACGAAGAAAAAGAAGTG 57.646 34.615 0.00 0.00 0.00 3.16
192 193 7.438459 TCTCTAAAGACGAAGAAAAAGAAGTGG 59.562 37.037 0.00 0.00 0.00 4.00
193 194 5.500645 AAAGACGAAGAAAAAGAAGTGGG 57.499 39.130 0.00 0.00 0.00 4.61
194 195 2.879026 AGACGAAGAAAAAGAAGTGGGC 59.121 45.455 0.00 0.00 0.00 5.36
195 196 1.602377 ACGAAGAAAAAGAAGTGGGCG 59.398 47.619 0.00 0.00 0.00 6.13
196 197 1.871039 CGAAGAAAAAGAAGTGGGCGA 59.129 47.619 0.00 0.00 0.00 5.54
197 198 2.289547 CGAAGAAAAAGAAGTGGGCGAA 59.710 45.455 0.00 0.00 0.00 4.70
198 199 3.629058 GAAGAAAAAGAAGTGGGCGAAC 58.371 45.455 0.00 0.00 0.00 3.95
199 200 2.650322 AGAAAAAGAAGTGGGCGAACA 58.350 42.857 0.00 0.00 0.00 3.18
200 201 2.357952 AGAAAAAGAAGTGGGCGAACAC 59.642 45.455 2.11 2.11 41.63 3.32
262 263 3.006672 CAAGGGATGCACCGGTATC 57.993 57.895 6.87 7.96 40.11 2.24
263 264 0.469917 CAAGGGATGCACCGGTATCT 59.530 55.000 6.87 0.00 40.11 1.98
264 265 0.469917 AAGGGATGCACCGGTATCTG 59.530 55.000 6.87 0.00 40.11 2.90
265 266 1.071471 GGGATGCACCGGTATCTGG 59.929 63.158 6.87 0.00 40.11 3.86
266 267 1.407656 GGGATGCACCGGTATCTGGA 61.408 60.000 6.87 0.00 40.11 3.86
267 268 0.249911 GGATGCACCGGTATCTGGAC 60.250 60.000 6.87 0.00 36.49 4.02
268 269 0.464036 GATGCACCGGTATCTGGACA 59.536 55.000 6.87 0.00 33.80 4.02
269 270 0.178068 ATGCACCGGTATCTGGACAC 59.822 55.000 6.87 0.00 0.00 3.67
270 271 1.518572 GCACCGGTATCTGGACACG 60.519 63.158 6.87 0.00 0.00 4.49
271 272 1.888018 CACCGGTATCTGGACACGT 59.112 57.895 6.87 0.00 0.00 4.49
272 273 0.457853 CACCGGTATCTGGACACGTG 60.458 60.000 15.48 15.48 0.00 4.49
273 274 0.609957 ACCGGTATCTGGACACGTGA 60.610 55.000 25.01 0.00 0.00 4.35
274 275 0.744874 CCGGTATCTGGACACGTGAT 59.255 55.000 25.01 7.28 0.00 3.06
275 276 1.536072 CCGGTATCTGGACACGTGATG 60.536 57.143 25.01 8.89 0.00 3.07
276 277 1.536072 CGGTATCTGGACACGTGATGG 60.536 57.143 25.01 9.22 0.00 3.51
277 278 1.754803 GGTATCTGGACACGTGATGGA 59.245 52.381 25.01 14.22 0.00 3.41
278 279 2.481449 GGTATCTGGACACGTGATGGAC 60.481 54.545 25.01 9.94 0.00 4.02
279 280 0.537188 ATCTGGACACGTGATGGACC 59.463 55.000 25.01 16.19 0.00 4.46
280 281 1.079127 CTGGACACGTGATGGACCC 60.079 63.158 25.01 12.73 0.00 4.46
281 282 1.826340 CTGGACACGTGATGGACCCA 61.826 60.000 25.01 16.25 0.00 4.51
282 283 1.079127 GGACACGTGATGGACCCAG 60.079 63.158 25.01 0.00 0.00 4.45
283 284 1.671742 GACACGTGATGGACCCAGT 59.328 57.895 25.01 0.00 0.00 4.00
284 285 0.892755 GACACGTGATGGACCCAGTA 59.107 55.000 25.01 0.00 0.00 2.74
285 286 0.895530 ACACGTGATGGACCCAGTAG 59.104 55.000 25.01 0.00 0.00 2.57
286 287 0.895530 CACGTGATGGACCCAGTAGT 59.104 55.000 10.90 0.00 0.00 2.73
287 288 2.097036 CACGTGATGGACCCAGTAGTA 58.903 52.381 10.90 0.00 0.00 1.82
288 289 2.494471 CACGTGATGGACCCAGTAGTAA 59.506 50.000 10.90 0.00 0.00 2.24
289 290 3.056393 CACGTGATGGACCCAGTAGTAAA 60.056 47.826 10.90 0.00 0.00 2.01
290 291 3.773119 ACGTGATGGACCCAGTAGTAAAT 59.227 43.478 0.00 0.00 0.00 1.40
291 292 4.957954 ACGTGATGGACCCAGTAGTAAATA 59.042 41.667 0.00 0.00 0.00 1.40
292 293 5.601313 ACGTGATGGACCCAGTAGTAAATAT 59.399 40.000 0.00 0.00 0.00 1.28
293 294 6.099269 ACGTGATGGACCCAGTAGTAAATATT 59.901 38.462 0.00 0.00 0.00 1.28
294 295 6.645415 CGTGATGGACCCAGTAGTAAATATTC 59.355 42.308 0.00 0.00 0.00 1.75
295 296 6.935208 GTGATGGACCCAGTAGTAAATATTCC 59.065 42.308 0.00 0.00 0.00 3.01
296 297 6.849697 TGATGGACCCAGTAGTAAATATTCCT 59.150 38.462 0.00 0.00 0.00 3.36
297 298 7.349859 TGATGGACCCAGTAGTAAATATTCCTT 59.650 37.037 0.00 0.00 0.00 3.36
298 299 7.519347 TGGACCCAGTAGTAAATATTCCTTT 57.481 36.000 0.00 0.00 0.00 3.11
299 300 7.343357 TGGACCCAGTAGTAAATATTCCTTTG 58.657 38.462 0.00 0.00 0.00 2.77
300 301 7.037153 TGGACCCAGTAGTAAATATTCCTTTGT 60.037 37.037 0.00 0.00 0.00 2.83
301 302 7.282450 GGACCCAGTAGTAAATATTCCTTTGTG 59.718 40.741 0.00 0.00 0.00 3.33
302 303 7.116736 ACCCAGTAGTAAATATTCCTTTGTGG 58.883 38.462 0.00 0.00 37.10 4.17
303 304 7.037153 ACCCAGTAGTAAATATTCCTTTGTGGA 60.037 37.037 0.00 0.00 44.51 4.02
319 320 6.524101 TTTGTGGAAGGCTTTGATTATACC 57.476 37.500 0.00 0.00 0.00 2.73
320 321 5.450818 TGTGGAAGGCTTTGATTATACCT 57.549 39.130 0.00 0.00 0.00 3.08
321 322 5.192927 TGTGGAAGGCTTTGATTATACCTG 58.807 41.667 0.00 0.00 0.00 4.00
322 323 4.580580 GTGGAAGGCTTTGATTATACCTGG 59.419 45.833 0.00 0.00 0.00 4.45
323 324 4.145052 GGAAGGCTTTGATTATACCTGGG 58.855 47.826 0.00 0.00 0.00 4.45
324 325 4.386424 GGAAGGCTTTGATTATACCTGGGT 60.386 45.833 0.00 0.00 0.00 4.51
325 326 4.170468 AGGCTTTGATTATACCTGGGTG 57.830 45.455 2.07 0.00 0.00 4.61
326 327 3.117512 AGGCTTTGATTATACCTGGGTGG 60.118 47.826 2.07 0.00 42.93 4.61
327 328 2.623416 GCTTTGATTATACCTGGGTGGC 59.377 50.000 2.07 0.00 40.22 5.01
328 329 3.897239 CTTTGATTATACCTGGGTGGCA 58.103 45.455 2.07 0.00 40.22 4.92
329 330 4.277476 CTTTGATTATACCTGGGTGGCAA 58.723 43.478 2.07 0.00 40.22 4.52
330 331 4.323569 TTGATTATACCTGGGTGGCAAA 57.676 40.909 2.07 0.00 40.22 3.68
331 332 3.897239 TGATTATACCTGGGTGGCAAAG 58.103 45.455 2.07 0.00 40.22 2.77
332 333 2.137810 TTATACCTGGGTGGCAAAGC 57.862 50.000 2.07 0.00 40.22 3.51
333 334 0.107410 TATACCTGGGTGGCAAAGCG 60.107 55.000 2.07 0.00 40.22 4.68
334 335 1.847798 ATACCTGGGTGGCAAAGCGA 61.848 55.000 2.07 0.00 40.22 4.93
335 336 2.058125 TACCTGGGTGGCAAAGCGAA 62.058 55.000 2.07 0.00 40.22 4.70
336 337 2.629656 CCTGGGTGGCAAAGCGAAG 61.630 63.158 0.00 0.00 0.00 3.79
337 338 1.898574 CTGGGTGGCAAAGCGAAGT 60.899 57.895 0.00 0.00 0.00 3.01
338 339 1.454847 TGGGTGGCAAAGCGAAGTT 60.455 52.632 0.00 0.00 0.00 2.66
339 340 1.040339 TGGGTGGCAAAGCGAAGTTT 61.040 50.000 0.00 0.00 0.00 2.66
340 341 0.318699 GGGTGGCAAAGCGAAGTTTC 60.319 55.000 0.00 0.00 0.00 2.78
341 342 0.668535 GGTGGCAAAGCGAAGTTTCT 59.331 50.000 0.00 0.00 0.00 2.52
342 343 1.600413 GGTGGCAAAGCGAAGTTTCTG 60.600 52.381 0.00 0.00 0.00 3.02
343 344 0.667993 TGGCAAAGCGAAGTTTCTGG 59.332 50.000 0.00 0.00 0.00 3.86
344 345 0.668535 GGCAAAGCGAAGTTTCTGGT 59.331 50.000 0.00 0.00 0.00 4.00
345 346 1.600413 GGCAAAGCGAAGTTTCTGGTG 60.600 52.381 0.00 0.00 0.00 4.17
346 347 1.600413 GCAAAGCGAAGTTTCTGGTGG 60.600 52.381 0.00 0.00 0.00 4.61
347 348 1.001378 CAAAGCGAAGTTTCTGGTGGG 60.001 52.381 0.00 0.00 0.00 4.61
348 349 0.182775 AAGCGAAGTTTCTGGTGGGT 59.817 50.000 0.00 0.00 0.00 4.51
349 350 1.053424 AGCGAAGTTTCTGGTGGGTA 58.947 50.000 0.00 0.00 0.00 3.69
350 351 1.002087 AGCGAAGTTTCTGGTGGGTAG 59.998 52.381 0.00 0.00 0.00 3.18
351 352 1.944430 GCGAAGTTTCTGGTGGGTAGG 60.944 57.143 0.00 0.00 0.00 3.18
352 353 1.346722 CGAAGTTTCTGGTGGGTAGGT 59.653 52.381 0.00 0.00 0.00 3.08
353 354 2.779506 GAAGTTTCTGGTGGGTAGGTG 58.220 52.381 0.00 0.00 0.00 4.00
354 355 1.815757 AGTTTCTGGTGGGTAGGTGT 58.184 50.000 0.00 0.00 0.00 4.16
355 356 1.697982 AGTTTCTGGTGGGTAGGTGTC 59.302 52.381 0.00 0.00 0.00 3.67
356 357 1.697982 GTTTCTGGTGGGTAGGTGTCT 59.302 52.381 0.00 0.00 0.00 3.41
357 358 2.901839 GTTTCTGGTGGGTAGGTGTCTA 59.098 50.000 0.00 0.00 0.00 2.59
358 359 3.263369 TTCTGGTGGGTAGGTGTCTAA 57.737 47.619 0.00 0.00 0.00 2.10
359 360 3.263369 TCTGGTGGGTAGGTGTCTAAA 57.737 47.619 0.00 0.00 0.00 1.85
360 361 3.589641 TCTGGTGGGTAGGTGTCTAAAA 58.410 45.455 0.00 0.00 0.00 1.52
361 362 3.325716 TCTGGTGGGTAGGTGTCTAAAAC 59.674 47.826 0.00 0.00 0.00 2.43
362 363 3.047115 TGGTGGGTAGGTGTCTAAAACA 58.953 45.455 0.00 0.00 34.78 2.83
363 364 3.458857 TGGTGGGTAGGTGTCTAAAACAA 59.541 43.478 0.00 0.00 40.31 2.83
364 365 3.817084 GGTGGGTAGGTGTCTAAAACAAC 59.183 47.826 0.00 0.00 46.65 3.32
371 372 2.552743 GGTGTCTAAAACAACCCTCTGC 59.447 50.000 0.00 0.00 39.89 4.26
372 373 3.211045 GTGTCTAAAACAACCCTCTGCA 58.789 45.455 0.00 0.00 40.31 4.41
373 374 3.630312 GTGTCTAAAACAACCCTCTGCAA 59.370 43.478 0.00 0.00 40.31 4.08
374 375 3.882888 TGTCTAAAACAACCCTCTGCAAG 59.117 43.478 0.00 0.00 34.03 4.01
375 376 3.253432 GTCTAAAACAACCCTCTGCAAGG 59.747 47.826 7.69 7.69 45.77 3.61
376 377 7.389626 TGTCTAAAACAACCCTCTGCAAGGA 62.390 44.000 14.33 0.00 40.60 3.36
377 378 8.774326 TGTCTAAAACAACCCTCTGCAAGGAA 62.774 42.308 14.33 0.00 40.60 3.36
413 414 9.804758 CGTTACAAGATTTATCTCTTACTTCCT 57.195 33.333 0.00 0.00 35.76 3.36
476 485 8.466798 ACAGAGTACAAACAAAGCAAAATACTT 58.533 29.630 0.00 0.00 0.00 2.24
569 591 5.124138 CAGAGGGAGTATATAGTACGCCTTG 59.876 48.000 7.69 2.31 37.51 3.61
586 608 9.257651 GTACGCCTTGTATTATTCAGTTCTTAT 57.742 33.333 0.00 0.00 35.02 1.73
588 610 9.174166 ACGCCTTGTATTATTCAGTTCTTATTT 57.826 29.630 0.00 0.00 0.00 1.40
656 678 2.288666 CCAACACACAGCTGTTGTACT 58.711 47.619 24.97 14.04 46.56 2.73
719 742 9.227490 CTGTTCAACTAGTACAAGATAATCTCG 57.773 37.037 0.00 0.00 0.00 4.04
737 760 4.801891 TCTCGTACAAGTTGATGGTGTAC 58.198 43.478 10.54 0.01 42.65 2.90
838 868 3.691118 ACAAGTCACGCATGAGCATAAAT 59.309 39.130 0.00 0.00 42.27 1.40
942 972 4.929146 AAACCAAAGGCATACTCCTACT 57.071 40.909 0.00 0.00 34.82 2.57
979 1009 5.087323 ACAGTGGAGAGAAGAGTCCAATAA 58.913 41.667 0.00 0.00 44.58 1.40
1164 1194 6.344500 TGGCAACTACAAATTTGTCAACATT 58.656 32.000 26.46 12.10 42.35 2.71
1396 1426 4.065789 GTGGAACAACTTCTTAGGAGGTG 58.934 47.826 3.61 3.61 44.16 4.00
1407 1437 1.847328 TAGGAGGTGCGTCATCTTCA 58.153 50.000 1.98 0.00 0.00 3.02
2580 14569 5.368145 TCTACATATCTTGCCACAATGTCC 58.632 41.667 0.00 0.00 33.15 4.02
2690 14680 6.924060 CCTTATATGTAGGTGTTCTACTGTGC 59.076 42.308 5.03 0.00 46.45 4.57
2837 14827 2.027561 CACATGTCGGAAGGGAAGGTTA 60.028 50.000 0.00 0.00 0.00 2.85
2843 14833 3.703052 GTCGGAAGGGAAGGTTACATAGA 59.297 47.826 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.462982 TCATCCTTATAAACGCACGCAT 58.537 40.909 0.00 0.00 0.00 4.73
1 2 2.863740 CTCATCCTTATAAACGCACGCA 59.136 45.455 0.00 0.00 0.00 5.24
2 3 2.864343 ACTCATCCTTATAAACGCACGC 59.136 45.455 0.00 0.00 0.00 5.34
5 6 7.330946 GCATATACACTCATCCTTATAAACGCA 59.669 37.037 0.00 0.00 0.00 5.24
6 7 7.462856 CGCATATACACTCATCCTTATAAACGC 60.463 40.741 0.00 0.00 0.00 4.84
7 8 7.541091 ACGCATATACACTCATCCTTATAAACG 59.459 37.037 0.00 0.00 0.00 3.60
8 9 8.758633 ACGCATATACACTCATCCTTATAAAC 57.241 34.615 0.00 0.00 0.00 2.01
9 10 9.850628 GTACGCATATACACTCATCCTTATAAA 57.149 33.333 0.00 0.00 0.00 1.40
10 11 9.016438 TGTACGCATATACACTCATCCTTATAA 57.984 33.333 0.00 0.00 29.97 0.98
11 12 8.570068 TGTACGCATATACACTCATCCTTATA 57.430 34.615 0.00 0.00 29.97 0.98
12 13 7.462571 TGTACGCATATACACTCATCCTTAT 57.537 36.000 0.00 0.00 29.97 1.73
13 14 6.887626 TGTACGCATATACACTCATCCTTA 57.112 37.500 0.00 0.00 29.97 2.69
14 15 5.784578 TGTACGCATATACACTCATCCTT 57.215 39.130 0.00 0.00 29.97 3.36
15 16 5.984695 ATGTACGCATATACACTCATCCT 57.015 39.130 0.00 0.00 37.88 3.24
16 17 7.480810 TCATATGTACGCATATACACTCATCC 58.519 38.462 1.90 0.00 44.12 3.51
17 18 8.911247 TTCATATGTACGCATATACACTCATC 57.089 34.615 1.90 0.00 44.12 2.92
18 19 9.305925 CATTCATATGTACGCATATACACTCAT 57.694 33.333 1.90 0.00 44.12 2.90
19 20 8.303876 ACATTCATATGTACGCATATACACTCA 58.696 33.333 1.90 0.00 44.12 3.41
20 21 8.689251 ACATTCATATGTACGCATATACACTC 57.311 34.615 1.90 0.00 44.12 3.51
21 22 8.523658 AGACATTCATATGTACGCATATACACT 58.476 33.333 1.90 0.00 44.90 3.55
22 23 8.587111 CAGACATTCATATGTACGCATATACAC 58.413 37.037 1.90 0.00 44.90 2.90
23 24 7.275560 GCAGACATTCATATGTACGCATATACA 59.724 37.037 1.90 0.00 44.90 2.29
24 25 7.254117 GGCAGACATTCATATGTACGCATATAC 60.254 40.741 1.90 0.00 44.90 1.47
25 26 6.756542 GGCAGACATTCATATGTACGCATATA 59.243 38.462 1.90 0.00 44.90 0.86
26 27 5.582269 GGCAGACATTCATATGTACGCATAT 59.418 40.000 1.90 0.00 44.90 1.78
27 28 4.929211 GGCAGACATTCATATGTACGCATA 59.071 41.667 1.90 0.00 44.90 3.14
28 29 3.748048 GGCAGACATTCATATGTACGCAT 59.252 43.478 1.90 0.00 44.90 4.73
29 30 3.130633 GGCAGACATTCATATGTACGCA 58.869 45.455 1.90 0.00 44.90 5.24
30 31 3.393800 AGGCAGACATTCATATGTACGC 58.606 45.455 1.90 0.00 44.90 4.42
31 32 4.876125 AGAGGCAGACATTCATATGTACG 58.124 43.478 1.90 0.00 44.90 3.67
32 33 8.744652 AGTATAGAGGCAGACATTCATATGTAC 58.255 37.037 1.90 0.00 44.90 2.90
33 34 8.885693 AGTATAGAGGCAGACATTCATATGTA 57.114 34.615 1.90 0.00 44.90 2.29
37 38 9.588096 TCTTTAGTATAGAGGCAGACATTCATA 57.412 33.333 0.00 0.00 0.00 2.15
38 39 8.484214 TCTTTAGTATAGAGGCAGACATTCAT 57.516 34.615 0.00 0.00 0.00 2.57
39 40 7.898014 TCTTTAGTATAGAGGCAGACATTCA 57.102 36.000 0.00 0.00 0.00 2.57
40 41 9.255304 CTTTCTTTAGTATAGAGGCAGACATTC 57.745 37.037 0.00 0.00 0.00 2.67
41 42 8.982723 TCTTTCTTTAGTATAGAGGCAGACATT 58.017 33.333 0.00 0.00 0.00 2.71
42 43 8.417884 GTCTTTCTTTAGTATAGAGGCAGACAT 58.582 37.037 14.82 0.00 34.88 3.06
43 44 7.415318 CGTCTTTCTTTAGTATAGAGGCAGACA 60.415 40.741 17.31 0.00 34.66 3.41
44 45 6.913673 CGTCTTTCTTTAGTATAGAGGCAGAC 59.086 42.308 12.13 12.13 33.16 3.51
45 46 6.827251 TCGTCTTTCTTTAGTATAGAGGCAGA 59.173 38.462 0.00 0.00 0.00 4.26
46 47 7.028926 TCGTCTTTCTTTAGTATAGAGGCAG 57.971 40.000 0.00 0.00 0.00 4.85
47 48 7.338703 TCTTCGTCTTTCTTTAGTATAGAGGCA 59.661 37.037 0.00 0.00 0.00 4.75
48 49 7.705214 TCTTCGTCTTTCTTTAGTATAGAGGC 58.295 38.462 0.00 0.00 0.00 4.70
49 50 8.347035 CCTCTTCGTCTTTCTTTAGTATAGAGG 58.653 40.741 0.00 0.00 38.30 3.69
50 51 7.858879 GCCTCTTCGTCTTTCTTTAGTATAGAG 59.141 40.741 0.00 0.00 0.00 2.43
51 52 7.466996 CGCCTCTTCGTCTTTCTTTAGTATAGA 60.467 40.741 0.00 0.00 0.00 1.98
52 53 6.633634 CGCCTCTTCGTCTTTCTTTAGTATAG 59.366 42.308 0.00 0.00 0.00 1.31
53 54 6.317140 TCGCCTCTTCGTCTTTCTTTAGTATA 59.683 38.462 0.00 0.00 0.00 1.47
54 55 5.125097 TCGCCTCTTCGTCTTTCTTTAGTAT 59.875 40.000 0.00 0.00 0.00 2.12
55 56 4.456911 TCGCCTCTTCGTCTTTCTTTAGTA 59.543 41.667 0.00 0.00 0.00 1.82
56 57 3.255149 TCGCCTCTTCGTCTTTCTTTAGT 59.745 43.478 0.00 0.00 0.00 2.24
57 58 3.834610 TCGCCTCTTCGTCTTTCTTTAG 58.165 45.455 0.00 0.00 0.00 1.85
58 59 3.928727 TCGCCTCTTCGTCTTTCTTTA 57.071 42.857 0.00 0.00 0.00 1.85
59 60 2.814280 TCGCCTCTTCGTCTTTCTTT 57.186 45.000 0.00 0.00 0.00 2.52
60 61 2.814280 TTCGCCTCTTCGTCTTTCTT 57.186 45.000 0.00 0.00 0.00 2.52
61 62 2.814280 TTTCGCCTCTTCGTCTTTCT 57.186 45.000 0.00 0.00 0.00 2.52
62 63 5.526010 TTATTTTCGCCTCTTCGTCTTTC 57.474 39.130 0.00 0.00 0.00 2.62
63 64 5.334646 GGTTTATTTTCGCCTCTTCGTCTTT 60.335 40.000 0.00 0.00 0.00 2.52
64 65 4.153655 GGTTTATTTTCGCCTCTTCGTCTT 59.846 41.667 0.00 0.00 0.00 3.01
65 66 3.683340 GGTTTATTTTCGCCTCTTCGTCT 59.317 43.478 0.00 0.00 0.00 4.18
66 67 3.181513 GGGTTTATTTTCGCCTCTTCGTC 60.182 47.826 0.00 0.00 0.00 4.20
67 68 2.745821 GGGTTTATTTTCGCCTCTTCGT 59.254 45.455 0.00 0.00 0.00 3.85
68 69 2.096980 GGGGTTTATTTTCGCCTCTTCG 59.903 50.000 0.00 0.00 34.49 3.79
69 70 3.353557 AGGGGTTTATTTTCGCCTCTTC 58.646 45.455 0.00 0.00 42.01 2.87
70 71 3.451402 AGGGGTTTATTTTCGCCTCTT 57.549 42.857 0.00 0.00 42.01 2.85
71 72 4.226620 TCTTAGGGGTTTATTTTCGCCTCT 59.773 41.667 4.17 0.00 44.03 3.69
72 73 4.520179 TCTTAGGGGTTTATTTTCGCCTC 58.480 43.478 4.17 0.00 44.03 4.70
73 74 4.579647 TCTTAGGGGTTTATTTTCGCCT 57.420 40.909 6.10 6.10 46.21 5.52
74 75 5.047872 TGTTTCTTAGGGGTTTATTTTCGCC 60.048 40.000 0.00 0.00 37.01 5.54
75 76 5.860182 GTGTTTCTTAGGGGTTTATTTTCGC 59.140 40.000 0.00 0.00 0.00 4.70
76 77 6.081693 CGTGTTTCTTAGGGGTTTATTTTCG 58.918 40.000 0.00 0.00 0.00 3.46
77 78 6.384224 CCGTGTTTCTTAGGGGTTTATTTTC 58.616 40.000 0.00 0.00 0.00 2.29
78 79 5.279106 GCCGTGTTTCTTAGGGGTTTATTTT 60.279 40.000 0.00 0.00 0.00 1.82
79 80 4.219070 GCCGTGTTTCTTAGGGGTTTATTT 59.781 41.667 0.00 0.00 0.00 1.40
80 81 3.760151 GCCGTGTTTCTTAGGGGTTTATT 59.240 43.478 0.00 0.00 0.00 1.40
81 82 3.349927 GCCGTGTTTCTTAGGGGTTTAT 58.650 45.455 0.00 0.00 0.00 1.40
82 83 2.781923 GCCGTGTTTCTTAGGGGTTTA 58.218 47.619 0.00 0.00 0.00 2.01
83 84 1.612676 GCCGTGTTTCTTAGGGGTTT 58.387 50.000 0.00 0.00 0.00 3.27
84 85 0.604511 CGCCGTGTTTCTTAGGGGTT 60.605 55.000 0.00 0.00 32.82 4.11
85 86 1.004200 CGCCGTGTTTCTTAGGGGT 60.004 57.895 0.00 0.00 32.82 4.95
86 87 2.396157 GCGCCGTGTTTCTTAGGGG 61.396 63.158 0.00 0.00 39.36 4.79
87 88 2.736682 CGCGCCGTGTTTCTTAGGG 61.737 63.158 0.00 0.00 0.00 3.53
88 89 1.286354 TTCGCGCCGTGTTTCTTAGG 61.286 55.000 0.00 0.00 0.00 2.69
89 90 0.509499 TTTCGCGCCGTGTTTCTTAG 59.491 50.000 0.00 0.00 0.00 2.18
90 91 0.509499 CTTTCGCGCCGTGTTTCTTA 59.491 50.000 0.00 0.00 0.00 2.10
91 92 1.278637 CTTTCGCGCCGTGTTTCTT 59.721 52.632 0.00 0.00 0.00 2.52
92 93 2.935955 CTTTCGCGCCGTGTTTCT 59.064 55.556 0.00 0.00 0.00 2.52
93 94 2.795389 GCTTTCGCGCCGTGTTTC 60.795 61.111 0.00 0.00 0.00 2.78
94 95 4.322385 GGCTTTCGCGCCGTGTTT 62.322 61.111 0.00 0.00 40.79 2.83
109 110 4.143363 GTACGGAAGCGCAACGGC 62.143 66.667 11.47 4.93 0.00 5.68
110 111 2.735478 TGTACGGAAGCGCAACGG 60.735 61.111 11.47 9.96 0.00 4.44
111 112 2.468532 GTGTACGGAAGCGCAACG 59.531 61.111 11.47 13.76 0.00 4.10
112 113 2.468532 CGTGTACGGAAGCGCAAC 59.531 61.111 11.47 2.10 35.37 4.17
117 118 1.874915 TATGCGCGTGTACGGAAGC 60.875 57.895 13.61 0.00 36.81 3.86
118 119 1.794455 CGTATGCGCGTGTACGGAAG 61.794 60.000 26.54 8.56 39.82 3.46
119 120 1.868692 CGTATGCGCGTGTACGGAA 60.869 57.895 26.54 0.00 39.82 4.30
120 121 2.277437 CGTATGCGCGTGTACGGA 60.277 61.111 26.54 0.00 39.82 4.69
121 122 1.676438 AAACGTATGCGCGTGTACGG 61.676 55.000 32.40 21.43 45.75 4.02
122 123 0.091678 AAAACGTATGCGCGTGTACG 59.908 50.000 29.88 29.88 45.00 3.67
123 124 1.387756 AGAAAACGTATGCGCGTGTAC 59.612 47.619 13.61 10.34 45.00 2.90
124 125 1.700523 AGAAAACGTATGCGCGTGTA 58.299 45.000 13.61 0.00 45.00 2.90
125 126 0.863144 AAGAAAACGTATGCGCGTGT 59.137 45.000 13.61 0.00 45.00 4.49
126 127 1.238281 CAAGAAAACGTATGCGCGTG 58.762 50.000 13.61 0.00 45.00 5.34
128 129 0.179225 AGCAAGAAAACGTATGCGCG 60.179 50.000 0.00 0.00 43.39 6.86
129 130 1.250476 CAGCAAGAAAACGTATGCGC 58.750 50.000 0.00 0.00 43.39 6.09
130 131 1.465689 CCCAGCAAGAAAACGTATGCG 60.466 52.381 0.19 0.19 43.39 4.73
131 132 1.135402 CCCCAGCAAGAAAACGTATGC 60.135 52.381 0.00 0.00 39.06 3.14
132 133 1.135402 GCCCCAGCAAGAAAACGTATG 60.135 52.381 0.00 0.00 39.53 2.39
133 134 1.173913 GCCCCAGCAAGAAAACGTAT 58.826 50.000 0.00 0.00 39.53 3.06
134 135 1.231958 CGCCCCAGCAAGAAAACGTA 61.232 55.000 0.00 0.00 39.83 3.57
135 136 2.551912 CGCCCCAGCAAGAAAACGT 61.552 57.895 0.00 0.00 39.83 3.99
136 137 2.255252 CGCCCCAGCAAGAAAACG 59.745 61.111 0.00 0.00 39.83 3.60
137 138 1.901464 TCCGCCCCAGCAAGAAAAC 60.901 57.895 0.00 0.00 39.83 2.43
138 139 1.901464 GTCCGCCCCAGCAAGAAAA 60.901 57.895 0.00 0.00 39.83 2.29
139 140 2.282180 GTCCGCCCCAGCAAGAAA 60.282 61.111 0.00 0.00 39.83 2.52
140 141 3.565214 TGTCCGCCCCAGCAAGAA 61.565 61.111 0.00 0.00 39.83 2.52
141 142 4.329545 GTGTCCGCCCCAGCAAGA 62.330 66.667 0.00 0.00 39.83 3.02
146 147 3.622060 AAATCCGTGTCCGCCCCAG 62.622 63.158 0.00 0.00 0.00 4.45
147 148 3.615509 GAAATCCGTGTCCGCCCCA 62.616 63.158 0.00 0.00 0.00 4.96
148 149 2.822701 GAAATCCGTGTCCGCCCC 60.823 66.667 0.00 0.00 0.00 5.80
149 150 1.814169 GAGAAATCCGTGTCCGCCC 60.814 63.158 0.00 0.00 0.00 6.13
150 151 0.806492 GAGAGAAATCCGTGTCCGCC 60.806 60.000 0.00 0.00 0.00 6.13
151 152 0.173708 AGAGAGAAATCCGTGTCCGC 59.826 55.000 0.00 0.00 0.00 5.54
152 153 3.777465 TTAGAGAGAAATCCGTGTCCG 57.223 47.619 0.00 0.00 0.00 4.79
153 154 5.103687 GTCTTTAGAGAGAAATCCGTGTCC 58.896 45.833 0.00 0.00 31.07 4.02
154 155 4.794246 CGTCTTTAGAGAGAAATCCGTGTC 59.206 45.833 0.00 0.00 31.07 3.67
155 156 4.458295 TCGTCTTTAGAGAGAAATCCGTGT 59.542 41.667 0.00 0.00 31.07 4.49
156 157 4.982999 TCGTCTTTAGAGAGAAATCCGTG 58.017 43.478 0.00 0.00 31.07 4.94
157 158 5.415077 TCTTCGTCTTTAGAGAGAAATCCGT 59.585 40.000 0.00 0.00 31.07 4.69
158 159 5.881447 TCTTCGTCTTTAGAGAGAAATCCG 58.119 41.667 0.00 0.00 31.07 4.18
159 160 8.535690 TTTTCTTCGTCTTTAGAGAGAAATCC 57.464 34.615 10.88 0.00 31.07 3.01
161 162 9.765795 TCTTTTTCTTCGTCTTTAGAGAGAAAT 57.234 29.630 10.88 0.00 31.07 2.17
162 163 9.595823 TTCTTTTTCTTCGTCTTTAGAGAGAAA 57.404 29.630 7.96 7.96 31.07 2.52
163 164 9.250624 CTTCTTTTTCTTCGTCTTTAGAGAGAA 57.749 33.333 0.00 0.00 31.07 2.87
164 165 8.414778 ACTTCTTTTTCTTCGTCTTTAGAGAGA 58.585 33.333 0.00 0.00 31.07 3.10
165 166 8.484008 CACTTCTTTTTCTTCGTCTTTAGAGAG 58.516 37.037 0.00 0.00 31.07 3.20
166 167 7.438459 CCACTTCTTTTTCTTCGTCTTTAGAGA 59.562 37.037 0.00 0.00 0.00 3.10
167 168 7.307455 CCCACTTCTTTTTCTTCGTCTTTAGAG 60.307 40.741 0.00 0.00 0.00 2.43
168 169 6.482308 CCCACTTCTTTTTCTTCGTCTTTAGA 59.518 38.462 0.00 0.00 0.00 2.10
169 170 6.659776 CCCACTTCTTTTTCTTCGTCTTTAG 58.340 40.000 0.00 0.00 0.00 1.85
170 171 5.008316 GCCCACTTCTTTTTCTTCGTCTTTA 59.992 40.000 0.00 0.00 0.00 1.85
171 172 4.202020 GCCCACTTCTTTTTCTTCGTCTTT 60.202 41.667 0.00 0.00 0.00 2.52
172 173 3.315470 GCCCACTTCTTTTTCTTCGTCTT 59.685 43.478 0.00 0.00 0.00 3.01
173 174 2.879026 GCCCACTTCTTTTTCTTCGTCT 59.121 45.455 0.00 0.00 0.00 4.18
174 175 2.349532 CGCCCACTTCTTTTTCTTCGTC 60.350 50.000 0.00 0.00 0.00 4.20
175 176 1.602377 CGCCCACTTCTTTTTCTTCGT 59.398 47.619 0.00 0.00 0.00 3.85
176 177 1.871039 TCGCCCACTTCTTTTTCTTCG 59.129 47.619 0.00 0.00 0.00 3.79
177 178 3.066203 TGTTCGCCCACTTCTTTTTCTTC 59.934 43.478 0.00 0.00 0.00 2.87
178 179 3.020984 TGTTCGCCCACTTCTTTTTCTT 58.979 40.909 0.00 0.00 0.00 2.52
179 180 2.357952 GTGTTCGCCCACTTCTTTTTCT 59.642 45.455 0.00 0.00 32.50 2.52
180 181 2.357952 AGTGTTCGCCCACTTCTTTTTC 59.642 45.455 1.49 0.00 42.99 2.29
181 182 2.357952 GAGTGTTCGCCCACTTCTTTTT 59.642 45.455 8.00 0.00 45.46 1.94
182 183 1.947456 GAGTGTTCGCCCACTTCTTTT 59.053 47.619 8.00 0.00 45.46 2.27
183 184 1.594331 GAGTGTTCGCCCACTTCTTT 58.406 50.000 8.00 0.00 45.46 2.52
184 185 0.600255 CGAGTGTTCGCCCACTTCTT 60.600 55.000 8.00 0.00 45.46 2.52
185 186 1.006102 CGAGTGTTCGCCCACTTCT 60.006 57.895 8.00 0.00 45.46 2.85
186 187 2.027625 CCGAGTGTTCGCCCACTTC 61.028 63.158 8.00 2.49 45.46 3.01
187 188 2.030562 CCGAGTGTTCGCCCACTT 59.969 61.111 8.00 0.00 45.46 3.16
244 245 0.469917 AGATACCGGTGCATCCCTTG 59.530 55.000 19.93 0.00 0.00 3.61
245 246 0.469917 CAGATACCGGTGCATCCCTT 59.530 55.000 19.93 0.00 0.00 3.95
246 247 1.410850 CCAGATACCGGTGCATCCCT 61.411 60.000 19.93 1.81 0.00 4.20
247 248 1.071471 CCAGATACCGGTGCATCCC 59.929 63.158 19.93 0.00 0.00 3.85
248 249 0.249911 GTCCAGATACCGGTGCATCC 60.250 60.000 19.93 1.16 0.00 3.51
249 250 0.464036 TGTCCAGATACCGGTGCATC 59.536 55.000 19.93 13.67 0.00 3.91
250 251 0.178068 GTGTCCAGATACCGGTGCAT 59.822 55.000 19.93 2.61 0.00 3.96
251 252 1.594833 GTGTCCAGATACCGGTGCA 59.405 57.895 19.93 0.00 0.00 4.57
252 253 1.518572 CGTGTCCAGATACCGGTGC 60.519 63.158 19.93 9.50 0.00 5.01
253 254 0.457853 CACGTGTCCAGATACCGGTG 60.458 60.000 19.93 0.00 0.00 4.94
254 255 0.609957 TCACGTGTCCAGATACCGGT 60.610 55.000 13.98 13.98 0.00 5.28
255 256 0.744874 ATCACGTGTCCAGATACCGG 59.255 55.000 16.51 0.00 0.00 5.28
256 257 1.536072 CCATCACGTGTCCAGATACCG 60.536 57.143 16.51 0.00 0.00 4.02
257 258 1.754803 TCCATCACGTGTCCAGATACC 59.245 52.381 16.51 0.00 0.00 2.73
258 259 2.481449 GGTCCATCACGTGTCCAGATAC 60.481 54.545 16.51 6.08 0.00 2.24
259 260 1.754803 GGTCCATCACGTGTCCAGATA 59.245 52.381 16.51 0.00 0.00 1.98
260 261 0.537188 GGTCCATCACGTGTCCAGAT 59.463 55.000 16.51 0.00 0.00 2.90
261 262 1.541310 GGGTCCATCACGTGTCCAGA 61.541 60.000 16.51 5.87 0.00 3.86
262 263 1.079127 GGGTCCATCACGTGTCCAG 60.079 63.158 16.51 3.44 0.00 3.86
263 264 1.826340 CTGGGTCCATCACGTGTCCA 61.826 60.000 16.51 12.85 0.00 4.02
264 265 1.079127 CTGGGTCCATCACGTGTCC 60.079 63.158 16.51 10.91 0.00 4.02
265 266 0.892755 TACTGGGTCCATCACGTGTC 59.107 55.000 16.51 2.56 0.00 3.67
266 267 0.895530 CTACTGGGTCCATCACGTGT 59.104 55.000 16.51 0.00 0.00 4.49
267 268 0.895530 ACTACTGGGTCCATCACGTG 59.104 55.000 9.94 9.94 0.00 4.49
268 269 2.519771 TACTACTGGGTCCATCACGT 57.480 50.000 0.00 0.00 0.00 4.49
269 270 3.880047 TTTACTACTGGGTCCATCACG 57.120 47.619 0.00 0.00 0.00 4.35
270 271 6.935208 GGAATATTTACTACTGGGTCCATCAC 59.065 42.308 0.00 0.00 0.00 3.06
271 272 6.849697 AGGAATATTTACTACTGGGTCCATCA 59.150 38.462 0.00 0.00 0.00 3.07
272 273 7.317722 AGGAATATTTACTACTGGGTCCATC 57.682 40.000 0.00 0.00 0.00 3.51
273 274 7.707467 AAGGAATATTTACTACTGGGTCCAT 57.293 36.000 0.00 0.00 0.00 3.41
274 275 7.037153 ACAAAGGAATATTTACTACTGGGTCCA 60.037 37.037 0.00 0.00 0.00 4.02
275 276 7.282450 CACAAAGGAATATTTACTACTGGGTCC 59.718 40.741 0.00 0.00 0.00 4.46
276 277 7.282450 CCACAAAGGAATATTTACTACTGGGTC 59.718 40.741 0.00 0.00 41.22 4.46
277 278 7.037153 TCCACAAAGGAATATTTACTACTGGGT 60.037 37.037 0.00 0.00 45.65 4.51
278 279 7.343357 TCCACAAAGGAATATTTACTACTGGG 58.657 38.462 0.00 0.00 45.65 4.45
295 296 6.378280 AGGTATAATCAAAGCCTTCCACAAAG 59.622 38.462 0.00 0.00 34.52 2.77
296 297 6.152661 CAGGTATAATCAAAGCCTTCCACAAA 59.847 38.462 0.00 0.00 0.00 2.83
297 298 5.652014 CAGGTATAATCAAAGCCTTCCACAA 59.348 40.000 0.00 0.00 0.00 3.33
298 299 5.192927 CAGGTATAATCAAAGCCTTCCACA 58.807 41.667 0.00 0.00 0.00 4.17
299 300 4.580580 CCAGGTATAATCAAAGCCTTCCAC 59.419 45.833 0.00 0.00 0.00 4.02
300 301 4.386312 CCCAGGTATAATCAAAGCCTTCCA 60.386 45.833 0.00 0.00 0.00 3.53
301 302 4.145052 CCCAGGTATAATCAAAGCCTTCC 58.855 47.826 0.00 0.00 0.00 3.46
302 303 4.580580 CACCCAGGTATAATCAAAGCCTTC 59.419 45.833 0.00 0.00 0.00 3.46
303 304 4.536765 CACCCAGGTATAATCAAAGCCTT 58.463 43.478 0.00 0.00 0.00 4.35
304 305 3.117512 CCACCCAGGTATAATCAAAGCCT 60.118 47.826 0.00 0.00 0.00 4.58
305 306 3.222603 CCACCCAGGTATAATCAAAGCC 58.777 50.000 0.00 0.00 0.00 4.35
306 307 2.623416 GCCACCCAGGTATAATCAAAGC 59.377 50.000 0.00 0.00 40.61 3.51
307 308 3.897239 TGCCACCCAGGTATAATCAAAG 58.103 45.455 0.00 0.00 40.61 2.77
308 309 4.323569 TTGCCACCCAGGTATAATCAAA 57.676 40.909 0.00 0.00 40.61 2.69
309 310 4.277476 CTTTGCCACCCAGGTATAATCAA 58.723 43.478 0.00 0.00 40.61 2.57
310 311 3.897239 CTTTGCCACCCAGGTATAATCA 58.103 45.455 0.00 0.00 40.61 2.57
311 312 2.623416 GCTTTGCCACCCAGGTATAATC 59.377 50.000 0.00 0.00 40.61 1.75
312 313 2.666317 GCTTTGCCACCCAGGTATAAT 58.334 47.619 0.00 0.00 40.61 1.28
313 314 1.680555 CGCTTTGCCACCCAGGTATAA 60.681 52.381 0.00 0.00 40.61 0.98
314 315 0.107410 CGCTTTGCCACCCAGGTATA 60.107 55.000 0.00 0.00 40.61 1.47
315 316 1.378514 CGCTTTGCCACCCAGGTAT 60.379 57.895 0.00 0.00 40.61 2.73
316 317 2.033448 CGCTTTGCCACCCAGGTA 59.967 61.111 0.00 0.00 40.61 3.08
317 318 3.429372 TTCGCTTTGCCACCCAGGT 62.429 57.895 0.00 0.00 40.61 4.00
318 319 2.597217 TTCGCTTTGCCACCCAGG 60.597 61.111 0.00 0.00 41.84 4.45
319 320 1.455383 AACTTCGCTTTGCCACCCAG 61.455 55.000 0.00 0.00 0.00 4.45
320 321 1.040339 AAACTTCGCTTTGCCACCCA 61.040 50.000 0.00 0.00 0.00 4.51
321 322 0.318699 GAAACTTCGCTTTGCCACCC 60.319 55.000 0.00 0.00 0.00 4.61
322 323 0.668535 AGAAACTTCGCTTTGCCACC 59.331 50.000 0.00 0.00 0.00 4.61
323 324 1.600413 CCAGAAACTTCGCTTTGCCAC 60.600 52.381 0.00 0.00 0.00 5.01
324 325 0.667993 CCAGAAACTTCGCTTTGCCA 59.332 50.000 0.00 0.00 0.00 4.92
325 326 0.668535 ACCAGAAACTTCGCTTTGCC 59.331 50.000 0.00 0.00 0.00 4.52
326 327 1.600413 CCACCAGAAACTTCGCTTTGC 60.600 52.381 0.00 0.00 0.00 3.68
327 328 1.001378 CCCACCAGAAACTTCGCTTTG 60.001 52.381 0.00 0.00 0.00 2.77
328 329 1.318576 CCCACCAGAAACTTCGCTTT 58.681 50.000 0.00 0.00 0.00 3.51
329 330 0.182775 ACCCACCAGAAACTTCGCTT 59.817 50.000 0.00 0.00 0.00 4.68
330 331 1.002087 CTACCCACCAGAAACTTCGCT 59.998 52.381 0.00 0.00 0.00 4.93
331 332 1.439679 CTACCCACCAGAAACTTCGC 58.560 55.000 0.00 0.00 0.00 4.70
332 333 1.346722 ACCTACCCACCAGAAACTTCG 59.653 52.381 0.00 0.00 0.00 3.79
333 334 2.105993 ACACCTACCCACCAGAAACTTC 59.894 50.000 0.00 0.00 0.00 3.01
334 335 2.105993 GACACCTACCCACCAGAAACTT 59.894 50.000 0.00 0.00 0.00 2.66
335 336 1.697982 GACACCTACCCACCAGAAACT 59.302 52.381 0.00 0.00 0.00 2.66
336 337 1.697982 AGACACCTACCCACCAGAAAC 59.302 52.381 0.00 0.00 0.00 2.78
337 338 2.112279 AGACACCTACCCACCAGAAA 57.888 50.000 0.00 0.00 0.00 2.52
338 339 3.263369 TTAGACACCTACCCACCAGAA 57.737 47.619 0.00 0.00 0.00 3.02
339 340 3.263369 TTTAGACACCTACCCACCAGA 57.737 47.619 0.00 0.00 0.00 3.86
340 341 3.071892 TGTTTTAGACACCTACCCACCAG 59.928 47.826 0.00 0.00 32.00 4.00
341 342 3.047115 TGTTTTAGACACCTACCCACCA 58.953 45.455 0.00 0.00 32.00 4.17
342 343 3.775261 TGTTTTAGACACCTACCCACC 57.225 47.619 0.00 0.00 32.00 4.61
343 344 3.817084 GGTTGTTTTAGACACCTACCCAC 59.183 47.826 0.00 0.00 38.18 4.61
344 345 4.089408 GGTTGTTTTAGACACCTACCCA 57.911 45.455 0.00 0.00 38.18 4.51
345 346 3.415212 GGGTTGTTTTAGACACCTACCC 58.585 50.000 0.00 0.00 45.10 3.69
346 347 4.041321 AGAGGGTTGTTTTAGACACCTACC 59.959 45.833 0.00 0.00 35.50 3.18
347 348 4.995487 CAGAGGGTTGTTTTAGACACCTAC 59.005 45.833 0.00 0.00 35.50 3.18
348 349 4.504340 GCAGAGGGTTGTTTTAGACACCTA 60.504 45.833 0.00 0.00 35.50 3.08
349 350 3.747708 GCAGAGGGTTGTTTTAGACACCT 60.748 47.826 0.00 0.00 37.43 4.00
350 351 2.552743 GCAGAGGGTTGTTTTAGACACC 59.447 50.000 0.00 0.00 38.18 4.16
351 352 3.211045 TGCAGAGGGTTGTTTTAGACAC 58.789 45.455 0.00 0.00 38.18 3.67
352 353 3.569194 TGCAGAGGGTTGTTTTAGACA 57.431 42.857 0.00 0.00 36.19 3.41
353 354 3.253432 CCTTGCAGAGGGTTGTTTTAGAC 59.747 47.826 6.96 0.00 42.26 2.59
354 355 3.137544 TCCTTGCAGAGGGTTGTTTTAGA 59.862 43.478 12.99 0.00 46.31 2.10
355 356 3.486383 TCCTTGCAGAGGGTTGTTTTAG 58.514 45.455 12.99 0.00 46.31 1.85
356 357 3.586470 TCCTTGCAGAGGGTTGTTTTA 57.414 42.857 12.99 0.00 46.31 1.52
357 358 2.452600 TCCTTGCAGAGGGTTGTTTT 57.547 45.000 12.99 0.00 46.31 2.43
358 359 2.310538 CTTCCTTGCAGAGGGTTGTTT 58.689 47.619 12.99 0.00 46.31 2.83
359 360 1.986882 CTTCCTTGCAGAGGGTTGTT 58.013 50.000 12.99 0.00 46.31 2.83
360 361 0.538287 GCTTCCTTGCAGAGGGTTGT 60.538 55.000 12.99 0.00 46.31 3.32
361 362 0.538057 TGCTTCCTTGCAGAGGGTTG 60.538 55.000 12.99 6.69 46.31 3.77
362 363 0.185901 TTGCTTCCTTGCAGAGGGTT 59.814 50.000 12.99 0.00 46.31 4.11
363 364 0.251077 CTTGCTTCCTTGCAGAGGGT 60.251 55.000 12.99 0.00 46.31 4.34
364 365 1.593296 GCTTGCTTCCTTGCAGAGGG 61.593 60.000 12.99 5.78 46.31 4.30
366 367 0.952497 TCGCTTGCTTCCTTGCAGAG 60.952 55.000 0.00 0.00 44.27 3.35
367 368 0.534877 TTCGCTTGCTTCCTTGCAGA 60.535 50.000 0.00 0.00 44.27 4.26
368 369 0.386478 GTTCGCTTGCTTCCTTGCAG 60.386 55.000 0.00 0.00 44.27 4.41
369 370 1.654220 GTTCGCTTGCTTCCTTGCA 59.346 52.632 0.00 0.00 41.65 4.08
370 371 1.441016 CGTTCGCTTGCTTCCTTGC 60.441 57.895 0.00 0.00 0.00 4.01
371 372 0.307760 AACGTTCGCTTGCTTCCTTG 59.692 50.000 0.00 0.00 0.00 3.61
372 373 1.529865 GTAACGTTCGCTTGCTTCCTT 59.470 47.619 2.82 0.00 0.00 3.36
373 374 1.145803 GTAACGTTCGCTTGCTTCCT 58.854 50.000 2.82 0.00 0.00 3.36
374 375 0.863144 TGTAACGTTCGCTTGCTTCC 59.137 50.000 2.82 0.00 0.00 3.46
375 376 2.220133 TCTTGTAACGTTCGCTTGCTTC 59.780 45.455 2.82 0.00 0.00 3.86
376 377 2.206750 TCTTGTAACGTTCGCTTGCTT 58.793 42.857 2.82 0.00 0.00 3.91
377 378 1.860676 TCTTGTAACGTTCGCTTGCT 58.139 45.000 2.82 0.00 0.00 3.91
378 379 2.875080 ATCTTGTAACGTTCGCTTGC 57.125 45.000 2.82 0.00 0.00 4.01
379 380 6.762108 AGATAAATCTTGTAACGTTCGCTTG 58.238 36.000 2.82 0.00 31.97 4.01
380 381 6.812160 AGAGATAAATCTTGTAACGTTCGCTT 59.188 34.615 2.82 0.00 37.25 4.68
381 382 6.331061 AGAGATAAATCTTGTAACGTTCGCT 58.669 36.000 2.82 0.00 37.25 4.93
451 460 8.856490 AAGTATTTTGCTTTGTTTGTACTCTG 57.144 30.769 0.00 0.00 0.00 3.35
537 559 9.978336 GTACTATATACTCCCTCTGTTCCTAAT 57.022 37.037 0.00 0.00 0.00 1.73
546 568 5.222089 ACAAGGCGTACTATATACTCCCTCT 60.222 44.000 0.00 0.00 0.00 3.69
588 610 9.896645 AGAATAGAGTAATTCATCAGAAAAGCA 57.103 29.630 0.00 0.00 38.16 3.91
610 632 4.634443 ACGGCAAACTAAGCGATTAAGAAT 59.366 37.500 0.00 0.00 0.00 2.40
656 678 6.215636 AGGCACCTCTATAGAAAAGAAAAGGA 59.784 38.462 3.57 0.00 0.00 3.36
719 742 7.718272 TTTGTAGTACACCATCAACTTGTAC 57.282 36.000 1.43 3.43 43.95 2.90
942 972 3.691575 TCCACTGTTGGTGTTTTCAGAA 58.308 40.909 0.00 0.00 44.35 3.02
979 1009 4.591321 TCTCTGGGGCAATATTTGTTCT 57.409 40.909 0.00 0.00 0.00 3.01
1050 1080 2.048127 GACCCGAGAAACTGCGCT 60.048 61.111 9.73 0.00 0.00 5.92
1164 1194 0.324943 CGAAGGAGGAAAGGAAGGCA 59.675 55.000 0.00 0.00 0.00 4.75
1251 1281 2.197577 GACTTGATGTCGGAGCTTAGC 58.802 52.381 0.00 0.00 35.81 3.09
1396 1426 2.125512 AGGCCGTGAAGATGACGC 60.126 61.111 0.00 0.00 35.45 5.19
2499 14488 5.368145 TCATGTTAGCCACCATCATACTTC 58.632 41.667 0.00 0.00 0.00 3.01
2547 14536 9.489084 GTGGCAAGATATGTAGATGTATTACAA 57.511 33.333 0.00 0.00 34.92 2.41
2555 14544 6.072838 GGACATTGTGGCAAGATATGTAGATG 60.073 42.308 0.00 0.00 30.14 2.90
2690 14680 4.276431 GTCTAGGTTCCTCGTCTTGGATAG 59.724 50.000 0.00 0.00 33.09 2.08
2837 14827 7.987458 CCATGTACAAGTCCTAAACATCTATGT 59.013 37.037 0.00 0.00 44.20 2.29
2843 14833 7.445402 GCATATCCATGTACAAGTCCTAAACAT 59.555 37.037 0.00 0.00 34.40 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.