AutoCloner

Multiple sequence alignment - TraesCS2B01G492400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G492400	chr2B	100.000	2445	0	0	1	2445	690678243	690675799	0.000000e+00	4516.0
1	TraesCS2B01G492400	chr2B	91.591	1439	83	15	1	1430	690603123	690601714	0.000000e+00	1953.0
2	TraesCS2B01G492400	chr2B	91.815	281	18	4	2166	2445	690597911	690597635	1.060000e-103	387.0
3	TraesCS2B01G492400	chr2B	97.661	171	4	0	1520	1690	690601565	690601395	6.610000e-76	294.0
4	TraesCS2B01G492400	chr2B	88.060	201	22	2	207	405	45729800	45729600	1.130000e-58	237.0
5	TraesCS2B01G492400	chr2B	86.070	201	27	1	207	406	438743921	438744121	5.300000e-52	215.0
6	TraesCS2B01G492400	chr2B	89.116	147	14	2	2299	2445	690600518	690600374	5.370000e-42	182.0
7	TraesCS2B01G492400	chr2B	94.737	76	4	0	1615	1690	690600046	690599971	4.270000e-23	119.0
8	TraesCS2B01G492400	chr2B	94.545	55	3	0	1471	1525	690601645	690601591	4.330000e-13	86.1
9	TraesCS2B01G492400	chr2D	90.136	1328	95	18	10	1332	574437125	574435829	0.000000e+00	1694.0
10	TraesCS2B01G492400	chr2D	85.897	312	31	6	1957	2255	574434458	574434147	1.090000e-83	320.0
11	TraesCS2B01G492400	chr2D	86.538	104	5	3	1588	1690	574431819	574431724	3.320000e-19	106.0
12	TraesCS2B01G492400	chr2D	94.444	54	0	2	1700	1750	574431440	574431387	2.020000e-11	80.5
13	TraesCS2B01G492400	chr2A	86.504	1356	110	18	183	1521	712805671	712804372	0.000000e+00	1423.0
14	TraesCS2B01G492400	chr2A	86.461	746	38	29	1757	2445	712801979	712801240	0.000000e+00	760.0
15	TraesCS2B01G492400	chr2A	91.515	165	14	0	1	165	712807055	712806891	6.800000e-56	228.0
16	TraesCS2B01G492400	chr2A	83.333	258	24	11	2017	2255	712803923	712803666	1.140000e-53	220.0
17	TraesCS2B01G492400	chr2A	87.435	191	23	1	216	405	69311207	69311017	4.090000e-53	219.0
18	TraesCS2B01G492400	chr2A	85.366	205	22	5	207	405	194713400	194713198	3.190000e-49	206.0
19	TraesCS2B01G492400	chr2A	85.955	178	18	3	1520	1690	712804342	712804165	1.490000e-42	183.0
20	TraesCS2B01G492400	chr2A	88.435	147	17	0	2299	2445	712803147	712803001	6.950000e-41	178.0
21	TraesCS2B01G492400	chr2A	92.784	97	7	0	1592	1688	712802684	712802588	9.110000e-30	141.0
22	TraesCS2B01G492400	chr6B	86.755	604	56	18	765	1358	78151563	78150974	0.000000e+00	651.0
23	TraesCS2B01G492400	chr6B	85.906	596	54	19	779	1359	58320000	58319420	2.080000e-170	608.0
24	TraesCS2B01G492400	chr6B	84.469	631	57	25	799	1402	50459250	50459866	3.500000e-163	584.0
25	TraesCS2B01G492400	chr6B	84.526	601	67	20	765	1358	77958161	77957580	2.730000e-159	571.0
26	TraesCS2B01G492400	chrUn	83.459	665	70	23	797	1435	137920058	137920708	1.260000e-162	582.0
27	TraesCS2B01G492400	chr6A	83.775	641	71	28	797	1418	45347523	45346897	5.860000e-161	577.0
28	TraesCS2B01G492400	chr5D	86.000	200	27	1	207	405	449691211	449691410	1.900000e-51	213.0
29	TraesCS2B01G492400	chr7B	85.714	203	24	4	206	405	540063460	540063260	2.460000e-50	209.0
30	TraesCS2B01G492400	chr7D	85.644	202	24	4	207	405	199606876	199607075	8.860000e-50	207.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G492400	chr2B	690675799	690678243	2444	True	4516.000000	4516	100.000000	1	2445	1	chr2B.!!$R2	2444
1	TraesCS2B01G492400	chr2B	690597635	690603123	5488	True	503.516667	1953	93.244167	1	2445	6	chr2B.!!$R3	2444
2	TraesCS2B01G492400	chr2D	574431387	574437125	5738	True	550.125000	1694	89.253750	10	2255	4	chr2D.!!$R1	2245
3	TraesCS2B01G492400	chr2A	712801240	712807055	5815	True	447.571429	1423	87.855286	1	2445	7	chr2A.!!$R3	2444
4	TraesCS2B01G492400	chr6B	78150974	78151563	589	True	651.000000	651	86.755000	765	1358	1	chr6B.!!$R3	593
5	TraesCS2B01G492400	chr6B	58319420	58320000	580	True	608.000000	608	85.906000	779	1359	1	chr6B.!!$R1	580
6	TraesCS2B01G492400	chr6B	50459250	50459866	616	False	584.000000	584	84.469000	799	1402	1	chr6B.!!$F1	603
7	TraesCS2B01G492400	chr6B	77957580	77958161	581	True	571.000000	571	84.526000	765	1358	1	chr6B.!!$R2	593
8	TraesCS2B01G492400	chrUn	137920058	137920708	650	False	582.000000	582	83.459000	797	1435	1	chrUn.!!$F1	638
9	TraesCS2B01G492400	chr6A	45346897	45347523	626	True	577.000000	577	83.775000	797	1418	1	chr6A.!!$R1	621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
667	1870	0.179116	CATCCTCAGAGTGCCGAGTG	60.179	60.0	0.0	0.0	0.0	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1790	7539	0.984961	CATTGAGGCTGGAGGAGGGA	60.985	60.0	0.0	0.0	0.0	4.2	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
114	115	1.555477	TAATCCGCCCCAAAGGACGT	61.555	55.000	0.00	0.00	39.66	4.34
129	130	2.042162	AGGACGTACTTAAGGAGGACCA	59.958	50.000	24.43	0.00	35.63	4.02
130	131	3.029570	GGACGTACTTAAGGAGGACCAT	58.970	50.000	19.78	0.00	35.63	3.55
160	161	6.934561	AAAATTGACTCAAAGATAAAGCGC	57.065	33.333	0.00	0.00	0.00	5.92
168	169	1.166531	AAGATAAAGCGCCGCCATCC	61.167	55.000	4.98	0.00	0.00	3.51
236	1439	9.672086	CCTTTCGTTTTCATTTACTTGACATAA	57.328	29.630	0.00	0.00	0.00	1.90
265	1468	8.443937	GCTTTGTCTCGAGTCAAACTTATAAAT	58.556	33.333	26.74	0.00	31.74	1.40
410	1613	6.613755	TCACTAAACTTGGTCAAAGCTAAC	57.386	37.500	0.00	0.00	39.76	2.34
448	1651	9.614792	ATGAAAACAGAGGGAGTATGTATTTAC	57.385	33.333	0.00	0.00	27.65	2.01
467	1670	4.785453	GGAGCCGAGGCACAAGGG	62.785	72.222	17.18	0.00	44.88	3.95
470	1673	2.597510	GCCGAGGCACAAGGGTTT	60.598	61.111	9.58	0.00	41.49	3.27
483	1686	2.037847	GGTTTCCCTGCCTGCCAT	59.962	61.111	0.00	0.00	0.00	4.40
499	1702	1.813753	CATCACCCGCCGAAACGAT	60.814	57.895	0.00	0.00	34.06	3.73
502	1705	1.881252	CACCCGCCGAAACGATAGG	60.881	63.158	0.00	0.00	43.77	2.57
503	1706	2.965462	CCCGCCGAAACGATAGGC	60.965	66.667	6.95	6.95	46.88	3.93
533	1736	1.209127	GAATCCACGTGTTTGCCGG	59.791	57.895	15.65	0.00	0.00	6.13
543	1746	2.038269	GTTTGCCGGCGGAGATCAA	61.038	57.895	33.44	21.17	0.00	2.57
580	1783	0.811616	GTTTGCCAGCGGAGATCGAT	60.812	55.000	0.00	0.00	42.43	3.59
609	1812	1.478105	GCTTTGCCCTAATCACCTTGG	59.522	52.381	0.00	0.00	0.00	3.61
611	1814	3.430453	CTTTGCCCTAATCACCTTGGAA	58.570	45.455	0.00	0.00	0.00	3.53
618	1821	2.797177	AATCACCTTGGAAGAGAGGC	57.203	50.000	0.00	0.00	36.48	4.70
664	1867	1.683707	AGCATCCTCAGAGTGCCGA	60.684	57.895	8.98	0.00	39.62	5.54
665	1868	1.227205	GCATCCTCAGAGTGCCGAG	60.227	63.158	2.17	0.00	32.88	4.63
666	1869	1.954362	GCATCCTCAGAGTGCCGAGT	61.954	60.000	2.17	0.00	32.88	4.18
667	1870	0.179116	CATCCTCAGAGTGCCGAGTG	60.179	60.000	0.00	0.00	0.00	3.51
668	1871	0.323816	ATCCTCAGAGTGCCGAGTGA	60.324	55.000	0.00	0.00	0.00	3.41
712	1917	9.890629	ATAATTTCCTTAGAAAAAGAAATGCCC	57.109	29.630	0.00	0.00	44.91	5.36
713	1918	6.994421	TTTCCTTAGAAAAAGAAATGCCCT	57.006	33.333	0.00	0.00	39.05	5.19
714	1919	6.994421	TTCCTTAGAAAAAGAAATGCCCTT	57.006	33.333	0.00	0.00	0.00	3.95
715	1920	6.345096	TCCTTAGAAAAAGAAATGCCCTTG	57.655	37.500	0.00	0.00	0.00	3.61
716	1921	4.931601	CCTTAGAAAAAGAAATGCCCTTGC	59.068	41.667	0.00	0.00	38.26	4.01
723	1928	2.318908	AGAAATGCCCTTGCTTGTCAA	58.681	42.857	0.00	0.00	38.71	3.18
731	1936	3.152341	CCCTTGCTTGTCAATTCTCAGT	58.848	45.455	0.00	0.00	33.57	3.41
733	1938	4.320788	CCCTTGCTTGTCAATTCTCAGTTC	60.321	45.833	0.00	0.00	33.57	3.01
734	1939	4.518211	CCTTGCTTGTCAATTCTCAGTTCT	59.482	41.667	0.00	0.00	33.57	3.01
735	1940	5.334724	CCTTGCTTGTCAATTCTCAGTTCTC	60.335	44.000	0.00	0.00	33.57	2.87
736	1941	4.707105	TGCTTGTCAATTCTCAGTTCTCA	58.293	39.130	0.00	0.00	0.00	3.27
773	1978	3.182972	CGAATTTTGTGGCAAGAAAGCAG	59.817	43.478	0.00	0.00	35.83	4.24
815	2022	5.295045	GGCAAAATCCAATATTTTGAGCTGG	59.705	40.000	21.34	0.00	46.36	4.85
843	2052	2.351726	CCTCACCGGACGATGAAATTTC	59.648	50.000	9.46	11.41	33.16	2.17
844	2053	2.351726	CTCACCGGACGATGAAATTTCC	59.648	50.000	9.46	0.00	0.00	3.13
873	2084	2.730733	GATCCGCGCCATCTCTCA	59.269	61.111	0.00	0.00	0.00	3.27
962	2180	2.622064	AAATTCCCCTTCGATCCTCG	57.378	50.000	0.00	0.00	42.10	4.63
1386	3109	1.217779	GTCCAGTCTCTGCCAGCTC	59.782	63.158	0.00	0.00	0.00	4.09
1399	3122	0.747283	CCAGCTCCTGTTCCATCTGC	60.747	60.000	0.00	0.00	0.00	4.26
1401	3124	1.817099	GCTCCTGTTCCATCTGCCG	60.817	63.158	0.00	0.00	0.00	5.69
1419	3142	2.244651	GGAGTGCGCGTGTTGTTCT	61.245	57.895	8.43	0.00	0.00	3.01
1431	3154	1.129624	TGTTGTTCTGTCGTTGTGTGC	59.870	47.619	0.00	0.00	0.00	4.57
1435	3158	2.198406	GTTCTGTCGTTGTGTGCAGTA	58.802	47.619	0.00	0.00	0.00	2.74
1437	3160	1.139989	CTGTCGTTGTGTGCAGTAGG	58.860	55.000	0.00	0.00	0.00	3.18
1438	3161	0.249699	TGTCGTTGTGTGCAGTAGGG	60.250	55.000	0.00	0.00	0.00	3.53
1439	3162	0.249741	GTCGTTGTGTGCAGTAGGGT	60.250	55.000	0.00	0.00	0.00	4.34
1441	3164	0.033504	CGTTGTGTGCAGTAGGGTCT	59.966	55.000	0.00	0.00	0.00	3.85
1442	3165	1.540363	CGTTGTGTGCAGTAGGGTCTT	60.540	52.381	0.00	0.00	0.00	3.01
1443	3166	2.143925	GTTGTGTGCAGTAGGGTCTTC	58.856	52.381	0.00	0.00	0.00	2.87
1444	3167	0.685097	TGTGTGCAGTAGGGTCTTCC	59.315	55.000	0.00	0.00	0.00	3.46
1501	3267	3.511540	AGCTTGTTAAATTCTTCCCAGCC	59.488	43.478	0.00	0.00	0.00	4.85
1781	7530	8.333908	CAACTCACAATCATCTTATGCTACTTC	58.666	37.037	0.00	0.00	0.00	3.01
1790	7539	3.773119	TCTTATGCTACTTCGTCCCCTTT	59.227	43.478	0.00	0.00	0.00	3.11
1803	7552	2.684499	CCCTTTCCCTCCTCCAGCC	61.684	68.421	0.00	0.00	0.00	4.85
1821	7570	1.612726	GCCTCAATGAGTTGGCTGACT	60.613	52.381	9.63	0.00	41.92	3.41
1822	7571	2.355108	GCCTCAATGAGTTGGCTGACTA	60.355	50.000	9.63	0.00	41.92	2.59
1823	7572	3.529533	CCTCAATGAGTTGGCTGACTAG	58.470	50.000	9.63	0.00	35.99	2.57
1931	7690	9.529325	GGATAGGCCAAATTAAAGTCAAATTAC	57.471	33.333	5.01	0.00	36.34	1.89
1983	7765	3.573229	ACCTGCTGCTGCCTGGAA	61.573	61.111	24.12	2.63	38.71	3.53
2033	7822	0.813184	CAATGGTGGCTGCTTTCGAT	59.187	50.000	0.00	0.00	0.00	3.59
2085	7874	2.676076	CCAACCATGGCTTCTTTTTCG	58.324	47.619	13.04	0.00	40.58	3.46
2095	7884	5.801380	TGGCTTCTTTTTCGGTAGAACTAT	58.199	37.500	0.00	0.00	35.86	2.12
2144	7948	1.686587	GGGGCCTTATATGTTGTTGGC	59.313	52.381	0.84	0.00	39.61	4.52
2149	7953	5.022282	GCCTTATATGTTGTTGGCCAATT	57.978	39.130	23.66	7.22	35.02	2.32
2169	9255	6.881065	CCAATTTGGACTTCTGACTTAGATGA	59.119	38.462	10.03	0.00	40.96	2.92
2220	9306	2.257894	CGTTTCACTGTTTTTGCAGCA	58.742	42.857	0.00	0.00	39.96	4.41
2366	9453	0.521291	GCACAGGCTCGCAACATAAA	59.479	50.000	0.63	0.00	36.96	1.40
2381	9468	3.472652	ACATAAAGGCACTCGTGTTTGA	58.527	40.909	0.00	0.00	38.49	2.69
2382	9469	3.880490	ACATAAAGGCACTCGTGTTTGAA	59.120	39.130	0.00	0.00	38.49	2.69
2417	9508	6.317391	TGTGTGTGAGTGTGACATTGATAAAA	59.683	34.615	0.00	0.00	0.00	1.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
114	115	5.138758	TGAGCTATGGTCCTCCTTAAGTA	57.861	43.478	0.97	0.00	34.23	2.24
160	161	3.266964	CACTTGTGTGGATGGCGG	58.733	61.111	0.00	0.00	40.33	6.13
168	169	5.566927	CCTCTTAGAGGCAACACTTGTGTG	61.567	50.000	16.01	3.58	43.29	3.82
236	1439	5.140747	AGTTTGACTCGAGACAAAGCTAT	57.859	39.130	33.03	20.62	39.51	2.97
293	1496	9.537192	AATATTGATTTGCTATTGTGGATGTTG	57.463	29.630	0.00	0.00	0.00	3.33
390	1593	7.202016	TCATGTTAGCTTTGACCAAGTTTAG	57.798	36.000	0.00	0.00	34.56	1.85
410	1613	6.047870	CCTCTGTTTTCATCTACTCCTCATG	58.952	44.000	0.00	0.00	0.00	3.07
467	1670	1.304381	TGATGGCAGGCAGGGAAAC	60.304	57.895	1.89	0.00	0.00	2.78
470	1673	3.731728	GGTGATGGCAGGCAGGGA	61.732	66.667	1.89	0.00	0.00	4.20
483	1686	1.140161	CTATCGTTTCGGCGGGTGA	59.860	57.895	7.21	0.26	0.00	4.02
491	1694	2.398498	CATCCTCTGCCTATCGTTTCG	58.602	52.381	0.00	0.00	0.00	3.46
499	1702	0.764369	ATTCGCCCATCCTCTGCCTA	60.764	55.000	0.00	0.00	0.00	3.93
502	1705	1.599240	GGATTCGCCCATCCTCTGC	60.599	63.158	2.08	0.00	39.93	4.26
503	1706	0.533755	GTGGATTCGCCCATCCTCTG	60.534	60.000	9.66	0.00	43.12	3.35
533	1736	2.514824	GCCCACCTTGATCTCCGC	60.515	66.667	0.00	0.00	0.00	5.54
580	1783	4.227300	TGATTAGGGCAAAGCTTCCTTCTA	59.773	41.667	10.24	3.55	32.46	2.10
609	1812	4.991687	CGTAGGGATTTATTGCCTCTCTTC	59.008	45.833	0.00	0.00	44.08	2.87
611	1814	3.325135	CCGTAGGGATTTATTGCCTCTCT	59.675	47.826	0.00	0.00	44.08	3.10
699	1904	4.129380	GACAAGCAAGGGCATTTCTTTTT	58.871	39.130	0.00	0.00	44.61	1.94
700	1905	3.134442	TGACAAGCAAGGGCATTTCTTTT	59.866	39.130	0.00	0.00	44.61	2.27
701	1906	2.699846	TGACAAGCAAGGGCATTTCTTT	59.300	40.909	0.00	0.00	44.61	2.52
702	1907	2.318908	TGACAAGCAAGGGCATTTCTT	58.681	42.857	0.00	0.00	44.61	2.52
703	1908	1.999648	TGACAAGCAAGGGCATTTCT	58.000	45.000	0.00	0.00	44.61	2.52
704	1909	2.818130	TTGACAAGCAAGGGCATTTC	57.182	45.000	0.00	0.00	44.61	2.17
705	1910	3.325716	AGAATTGACAAGCAAGGGCATTT	59.674	39.130	0.00	0.00	44.61	2.32
706	1911	2.901839	AGAATTGACAAGCAAGGGCATT	59.098	40.909	0.00	0.00	44.61	3.56
707	1912	2.494870	GAGAATTGACAAGCAAGGGCAT	59.505	45.455	0.00	0.00	44.61	4.40
708	1913	1.888512	GAGAATTGACAAGCAAGGGCA	59.111	47.619	0.00	0.00	44.61	5.36
709	1914	1.888512	TGAGAATTGACAAGCAAGGGC	59.111	47.619	0.00	0.00	40.42	5.19
710	1915	3.152341	ACTGAGAATTGACAAGCAAGGG	58.848	45.455	0.00	0.00	40.42	3.95
711	1916	4.518211	AGAACTGAGAATTGACAAGCAAGG	59.482	41.667	0.00	0.00	40.42	3.61
712	1917	5.237996	TGAGAACTGAGAATTGACAAGCAAG	59.762	40.000	0.00	0.00	40.42	4.01
713	1918	5.125356	TGAGAACTGAGAATTGACAAGCAA	58.875	37.500	0.00	0.00	41.53	3.91
714	1919	4.707105	TGAGAACTGAGAATTGACAAGCA	58.293	39.130	0.00	0.00	0.00	3.91
715	1920	4.993584	TCTGAGAACTGAGAATTGACAAGC	59.006	41.667	0.00	0.00	0.00	4.01
716	1921	6.872547	TCATCTGAGAACTGAGAATTGACAAG	59.127	38.462	0.00	0.00	0.00	3.16
723	1928	5.651387	TCGTTCATCTGAGAACTGAGAAT	57.349	39.130	13.94	0.00	44.37	2.40
731	1936	3.049912	CGTGTGTTCGTTCATCTGAGAA	58.950	45.455	0.00	0.00	0.00	2.87
733	1938	2.661594	TCGTGTGTTCGTTCATCTGAG	58.338	47.619	0.00	0.00	0.00	3.35
734	1939	2.785713	TCGTGTGTTCGTTCATCTGA	57.214	45.000	0.00	0.00	0.00	3.27
735	1940	4.389664	AATTCGTGTGTTCGTTCATCTG	57.610	40.909	0.00	0.00	0.00	2.90
736	1941	5.204833	CAAAATTCGTGTGTTCGTTCATCT	58.795	37.500	0.00	0.00	0.00	2.90
773	1978	3.502572	GGTTCCAAGCGAGCCATC	58.497	61.111	0.00	0.00	41.43	3.51
931	2142	3.187112	AGGGGAATTTAACGAGGGAGAA	58.813	45.455	0.00	0.00	0.00	2.87
932	2143	2.841795	AGGGGAATTTAACGAGGGAGA	58.158	47.619	0.00	0.00	0.00	3.71
993	2219	1.488705	AATTGGGTGGAGACGCTGGA	61.489	55.000	0.00	0.00	41.78	3.86
997	2230	0.394352	ATGGAATTGGGTGGAGACGC	60.394	55.000	0.00	0.00	41.20	5.19
1104	2365	1.672356	GATGTTGTCCCGCAGCACT	60.672	57.895	0.00	0.00	41.03	4.40
1362	3079	2.487428	CAGAGACTGGACGGAGCG	59.513	66.667	0.00	0.00	0.00	5.03
1401	3124	2.244651	AGAACAACACGCGCACTCC	61.245	57.895	5.73	0.00	0.00	3.85
1409	3132	1.392168	ACACAACGACAGAACAACACG	59.608	47.619	0.00	0.00	0.00	4.49
1419	3142	0.249699	CCCTACTGCACACAACGACA	60.250	55.000	0.00	0.00	0.00	4.35
1431	3154	4.901849	TCCATATTCAGGAAGACCCTACTG	59.098	45.833	0.00	0.00	45.60	2.74
1437	3160	4.090761	TGCATCCATATTCAGGAAGACC	57.909	45.455	0.00	0.00	38.93	3.85
1438	3161	5.558818	AGATGCATCCATATTCAGGAAGAC	58.441	41.667	23.06	0.00	38.93	3.01
1439	3162	5.546887	AGAGATGCATCCATATTCAGGAAGA	59.453	40.000	23.06	0.00	38.93	2.87
1441	3164	5.568223	CGAGAGATGCATCCATATTCAGGAA	60.568	44.000	23.06	0.00	38.93	3.36
1442	3165	4.081807	CGAGAGATGCATCCATATTCAGGA	60.082	45.833	23.06	0.00	39.97	3.86
1443	3166	4.081807	TCGAGAGATGCATCCATATTCAGG	60.082	45.833	23.06	9.35	33.31	3.86
1444	3167	5.069501	TCGAGAGATGCATCCATATTCAG	57.930	43.478	23.06	11.37	33.31	3.02
1501	3267	9.618890	TTGGTTCATTATCTCCTAATCTTTCTG	57.381	33.333	0.00	0.00	0.00	3.02
1605	3412	4.572795	TGAAGTAATGCAACAACGTCTGAA	59.427	37.500	11.51	0.00	0.00	3.02
1690	3497	9.725019	AACATCACAGATAACTTTCACAGATAA	57.275	29.630	0.00	0.00	0.00	1.75
1691	3498	9.725019	AAACATCACAGATAACTTTCACAGATA	57.275	29.630	0.00	0.00	0.00	1.98
1692	3499	8.509690	CAAACATCACAGATAACTTTCACAGAT	58.490	33.333	0.00	0.00	0.00	2.90
1694	3501	7.588854	CACAAACATCACAGATAACTTTCACAG	59.411	37.037	0.00	0.00	0.00	3.66
1695	3502	7.066887	ACACAAACATCACAGATAACTTTCACA	59.933	33.333	0.00	0.00	0.00	3.58
1751	7461	6.656270	AGCATAAGATGATTGTGAGTTGTTGA	59.344	34.615	0.00	0.00	0.00	3.18
1781	7530	2.368011	GGAGGAGGGAAAGGGGACG	61.368	68.421	0.00	0.00	0.00	4.79
1790	7539	0.984961	CATTGAGGCTGGAGGAGGGA	60.985	60.000	0.00	0.00	0.00	4.20
1803	7552	2.935201	GCTAGTCAGCCAACTCATTGAG	59.065	50.000	12.17	12.17	42.37	3.02
1847	7596	8.506168	TTTGCGAGGTATCTCATTTTAATCTT	57.494	30.769	3.42	0.00	39.95	2.40
1931	7690	9.234827	TGATTATGCCTGATCCACAATAAATAG	57.765	33.333	0.00	0.00	0.00	1.73
1932	7691	9.758021	ATGATTATGCCTGATCCACAATAAATA	57.242	29.630	0.00	0.00	0.00	1.40
1934	7693	7.039574	CCATGATTATGCCTGATCCACAATAAA	60.040	37.037	0.00	0.00	32.79	1.40
1939	7699	3.758425	CCATGATTATGCCTGATCCACA	58.242	45.455	0.00	0.00	32.79	4.17
1979	7761	3.762407	TTCCTCGTCTGATGTTTTCCA	57.238	42.857	0.00	0.00	0.00	3.53
1983	7765	3.820467	TGCATTTTCCTCGTCTGATGTTT	59.180	39.130	0.00	0.00	0.00	2.83
2085	7874	2.603560	GTCGCAGCACAATAGTTCTACC	59.396	50.000	0.00	0.00	0.00	3.18
2095	7884	1.451207	ACCAACAGTCGCAGCACAA	60.451	52.632	0.00	0.00	0.00	3.33
2144	7948	6.881065	TCATCTAAGTCAGAAGTCCAAATTGG	59.119	38.462	5.48	5.48	36.67	3.16
2149	7953	5.106118	CGAGTCATCTAAGTCAGAAGTCCAA	60.106	44.000	0.00	0.00	36.67	3.53
2155	7959	7.867305	AGATTACGAGTCATCTAAGTCAGAA	57.133	36.000	0.00	0.00	36.67	3.02
2157	7961	7.295201	GCTAGATTACGAGTCATCTAAGTCAG	58.705	42.308	8.08	1.19	32.70	3.51
2169	9255	2.814919	CTCCATCGGCTAGATTACGAGT	59.185	50.000	0.00	0.00	40.21	4.18
2362	9449	4.134563	ACTTCAAACACGAGTGCCTTTAT	58.865	39.130	2.76	0.00	0.00	1.40
2366	9453	2.102588	ACTACTTCAAACACGAGTGCCT	59.897	45.455	2.76	0.00	0.00	4.75
2381	9468	3.932710	CACTCACACACACACAACTACTT	59.067	43.478	0.00	0.00	0.00	2.24
2382	9469	3.056107	ACACTCACACACACACAACTACT	60.056	43.478	0.00	0.00	0.00	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.