Multiple sequence alignment - TraesCS2B01G492200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G492200 chr2B 100.000 6294 0 0 1 6294 690588505 690594798 0.000000e+00 11623.0
1 TraesCS2B01G492200 chr2B 93.431 137 5 4 1975 2110 642814801 642814934 3.850000e-47 200.0
2 TraesCS2B01G492200 chr2B 89.524 105 10 1 6022 6125 690675137 690675241 1.420000e-26 132.0
3 TraesCS2B01G492200 chr2B 81.560 141 20 3 6154 6294 690675244 690675378 1.850000e-20 111.0
4 TraesCS2B01G492200 chr2B 93.103 58 3 1 1590 1646 690589829 690589886 4.040000e-12 84.2
5 TraesCS2B01G492200 chr2B 93.103 58 3 1 1325 1382 690590094 690590150 4.040000e-12 84.2
6 TraesCS2B01G492200 chr2A 94.948 2890 120 15 2108 4989 712795768 712798639 0.000000e+00 4505.0
7 TraesCS2B01G492200 chr2A 91.427 1458 76 22 568 1989 712794320 712795764 0.000000e+00 1954.0
8 TraesCS2B01G492200 chr2A 92.557 833 47 10 4990 5810 712799102 712799931 0.000000e+00 1181.0
9 TraesCS2B01G492200 chr2A 97.339 451 10 2 5845 6294 712800370 712800819 0.000000e+00 765.0
10 TraesCS2B01G492200 chr2A 89.753 283 10 3 1 264 712793841 712794123 1.680000e-90 344.0
11 TraesCS2B01G492200 chr2A 78.080 552 76 25 1095 1605 712794965 712795512 2.200000e-79 307.0
12 TraesCS2B01G492200 chr2A 77.982 545 74 27 1204 1738 712794843 712795351 3.690000e-77 300.0
13 TraesCS2B01G492200 chr2A 93.333 60 3 1 1590 1648 712795084 712795143 3.130000e-13 87.9
14 TraesCS2B01G492200 chr2A 92.982 57 3 1 1325 1381 712795350 712795405 1.450000e-11 82.4
15 TraesCS2B01G492200 chr2D 95.939 2758 98 8 2105 4858 574389044 574391791 0.000000e+00 4460.0
16 TraesCS2B01G492200 chr2D 90.349 1461 74 13 569 1993 574387618 574389047 0.000000e+00 1855.0
17 TraesCS2B01G492200 chr2D 91.734 496 34 5 4982 5472 574392292 574392785 0.000000e+00 682.0
18 TraesCS2B01G492200 chr2D 88.754 329 19 2 1 311 574387150 574387478 2.750000e-103 387.0
19 TraesCS2B01G492200 chr2D 79.936 314 44 11 1082 1382 574388252 574388559 4.940000e-51 213.0
20 TraesCS2B01G492200 chr2D 89.542 153 16 0 1586 1738 574388499 574388651 1.790000e-45 195.0
21 TraesCS2B01G492200 chr2D 98.077 52 1 0 4938 4989 574391789 574391840 2.420000e-14 91.6
22 TraesCS2B01G492200 chr2D 92.857 56 3 1 1590 1644 574388388 574388443 5.230000e-11 80.5
23 TraesCS2B01G492200 chr2D 91.379 58 4 1 1325 1382 574388650 574388706 1.880000e-10 78.7
24 TraesCS2B01G492200 chr6B 98.347 121 2 0 1990 2110 181705046 181705166 4.940000e-51 213.0
25 TraesCS2B01G492200 chr1B 98.361 122 1 1 1990 2111 349603060 349603180 4.940000e-51 213.0
26 TraesCS2B01G492200 chr1B 96.800 125 4 0 1986 2110 12924401 12924277 6.390000e-50 209.0
27 TraesCS2B01G492200 chr7B 94.853 136 5 2 1975 2110 692308834 692308701 1.780000e-50 211.0
28 TraesCS2B01G492200 chr7B 93.243 74 5 0 371 444 155471235 155471308 6.670000e-20 110.0
29 TraesCS2B01G492200 chr7B 93.243 74 5 0 371 444 211374112 211374185 6.670000e-20 110.0
30 TraesCS2B01G492200 chr5B 99.145 117 1 0 1990 2106 282392113 282391997 1.780000e-50 211.0
31 TraesCS2B01G492200 chr4B 96.774 124 3 1 1990 2112 598165705 598165582 8.270000e-49 206.0
32 TraesCS2B01G492200 chr4B 94.656 131 6 1 1990 2120 608968628 608968757 1.070000e-47 202.0
33 TraesCS2B01G492200 chr7D 94.656 131 6 1 1976 2106 579147170 579147041 1.070000e-47 202.0
34 TraesCS2B01G492200 chr7D 94.595 74 4 0 371 444 593035231 593035304 1.430000e-21 115.0
35 TraesCS2B01G492200 chr7D 92.208 77 6 0 371 447 197927092 197927016 6.670000e-20 110.0
36 TraesCS2B01G492200 chr7A 94.595 74 4 0 371 444 685583781 685583854 1.430000e-21 115.0
37 TraesCS2B01G492200 chr7A 92.208 77 6 0 371 447 427814935 427814859 6.670000e-20 110.0
38 TraesCS2B01G492200 chr7A 92.208 77 6 0 371 447 486930024 486929948 6.670000e-20 110.0
39 TraesCS2B01G492200 chr5D 92.208 77 6 0 371 447 93064542 93064618 6.670000e-20 110.0
40 TraesCS2B01G492200 chr4D 92.308 78 5 1 371 448 420141100 420141024 6.670000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G492200 chr2B 690588505 690594798 6293 False 11623.000000 11623 100.000000 1 6294 1 chr2B.!!$F2 6293
1 TraesCS2B01G492200 chr2A 712793841 712800819 6978 False 1058.477778 4505 89.822333 1 6294 9 chr2A.!!$F1 6293
2 TraesCS2B01G492200 chr2D 574387150 574392785 5635 False 893.644444 4460 90.951889 1 5472 9 chr2D.!!$F1 5471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 522 0.742281 CTGCCTGTTACGCAGCTCAT 60.742 55.000 0.00 0.00 46.54 2.90 F
504 524 0.804989 GCCTGTTACGCAGCTCATTT 59.195 50.000 0.00 0.00 43.71 2.32 F
1761 1878 1.074471 TATGGTGCCTCCTCCTCCC 60.074 63.158 0.00 0.00 37.07 4.30 F
2003 2135 0.030369 CGATTTACTCCCTCCGTCCG 59.970 60.000 0.00 0.00 0.00 4.79 F
2005 2137 0.032813 ATTTACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14 F
2008 2140 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17 F
2011 2143 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
3029 3168 0.179113 ACGTGGCTGCAAAAAGTTGG 60.179 50.000 0.50 0.00 35.10 3.77 F
3524 3664 1.343142 TGAACCGCAGTGTACTGATGT 59.657 47.619 15.78 8.33 46.59 3.06 F
4852 4993 0.883814 GCCATTCTGCCTGATCTCGG 60.884 60.000 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2116 0.030369 CGGACGGAGGGAGTAAATCG 59.970 60.000 0.00 0.00 0.00 3.34 R
1989 2121 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
3115 3254 0.773644 AGGATTTGCTCACAGGTGGT 59.226 50.000 0.00 0.00 0.00 4.16 R
3910 4050 0.968405 TTTTTGTCTGCTGGGATGGC 59.032 50.000 0.00 0.00 0.00 4.40 R
3990 4130 3.057033 AGTGCTTTCATGCTGGAAATGTC 60.057 43.478 4.26 0.00 36.29 3.06 R
4026 4166 2.678836 TCCGTCAGATTCTCTTCGAGTC 59.321 50.000 0.00 0.00 0.00 3.36 R
4380 4520 1.217779 GCCAGAGCCAGACTGACTC 59.782 63.158 10.57 10.57 37.54 3.36 R
4665 4805 0.391263 GGCCAGTTAACTCCTGTCCG 60.391 60.000 4.77 0.00 0.00 4.79 R
5099 5703 0.521291 CCGTACCAACAATGCAGTGG 59.479 55.000 19.57 12.48 0.00 4.00 R
5934 6954 0.996462 TCGCAGTAGTACGCAAATGC 59.004 50.000 14.47 8.93 37.78 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 174 6.490381 TGTACATGCCAACATTTACTTGGTTA 59.510 34.615 0.00 0.00 39.28 2.85
188 190 7.841915 ACTTGGTTATTTTCTTTGTGGTTTG 57.158 32.000 0.00 0.00 0.00 2.93
206 226 1.838112 TGTAAGCTGCCTGGGAATTG 58.162 50.000 0.00 0.00 0.00 2.32
213 233 2.871637 GCTGCCTGGGAATTGTTTTTCC 60.872 50.000 0.00 0.00 43.78 3.13
226 246 5.787953 TTGTTTTTCCTCATTCTGCATGA 57.212 34.783 0.00 0.00 39.82 3.07
234 254 3.924686 CCTCATTCTGCATGAAAGTTTGC 59.075 43.478 0.00 0.00 41.66 3.68
237 257 4.986034 TCATTCTGCATGAAAGTTTGCTTG 59.014 37.500 0.00 0.00 39.11 4.01
239 259 2.957680 TCTGCATGAAAGTTTGCTTGGA 59.042 40.909 0.00 0.00 39.60 3.53
260 280 9.862585 CTTGGAAATTTTCTTTAAAAATCGTGG 57.137 29.630 8.93 0.00 38.07 4.94
264 284 9.858247 GAAATTTTCTTTAAAAATCGTGGGTTC 57.142 29.630 1.79 0.00 38.07 3.62
265 285 9.607988 AAATTTTCTTTAAAAATCGTGGGTTCT 57.392 25.926 0.00 0.00 38.07 3.01
277 297 2.235016 GTGGGTTCTAAACATGCCACA 58.765 47.619 9.24 0.00 39.53 4.17
281 301 3.146066 GGTTCTAAACATGCCACAGTCA 58.854 45.455 0.00 0.00 0.00 3.41
311 331 5.904941 TGCATGCCTAGTTTCCATTTATTG 58.095 37.500 16.68 0.00 0.00 1.90
313 333 5.163416 GCATGCCTAGTTTCCATTTATTGGT 60.163 40.000 6.36 0.00 46.52 3.67
315 335 7.255942 GCATGCCTAGTTTCCATTTATTGGTAT 60.256 37.037 6.36 0.00 46.52 2.73
316 336 8.641541 CATGCCTAGTTTCCATTTATTGGTATT 58.358 33.333 0.00 0.00 46.52 1.89
326 346 9.856162 TTCCATTTATTGGTATTAAGTACTCCC 57.144 33.333 0.00 0.00 46.52 4.30
327 347 9.232882 TCCATTTATTGGTATTAAGTACTCCCT 57.767 33.333 0.00 0.00 46.52 4.20
328 348 9.862149 CCATTTATTGGTATTAAGTACTCCCTT 57.138 33.333 0.00 0.00 40.99 3.95
330 350 9.862149 ATTTATTGGTATTAAGTACTCCCTTGG 57.138 33.333 0.00 0.00 33.64 3.61
331 351 6.903340 ATTGGTATTAAGTACTCCCTTGGT 57.097 37.500 0.00 0.00 33.64 3.67
332 352 6.707273 TTGGTATTAAGTACTCCCTTGGTT 57.293 37.500 0.00 0.00 33.64 3.67
333 353 6.303903 TGGTATTAAGTACTCCCTTGGTTC 57.696 41.667 0.00 0.00 33.64 3.62
334 354 5.786457 TGGTATTAAGTACTCCCTTGGTTCA 59.214 40.000 0.00 0.00 33.64 3.18
335 355 6.111382 GGTATTAAGTACTCCCTTGGTTCAC 58.889 44.000 0.00 0.00 33.64 3.18
336 356 6.070366 GGTATTAAGTACTCCCTTGGTTCACT 60.070 42.308 0.00 0.00 33.64 3.41
337 357 7.124750 GGTATTAAGTACTCCCTTGGTTCACTA 59.875 40.741 0.00 0.00 33.64 2.74
338 358 7.750947 ATTAAGTACTCCCTTGGTTCACTAT 57.249 36.000 0.00 0.00 0.00 2.12
339 359 7.563724 TTAAGTACTCCCTTGGTTCACTATT 57.436 36.000 0.00 0.00 0.00 1.73
340 360 8.669055 TTAAGTACTCCCTTGGTTCACTATTA 57.331 34.615 0.00 0.00 0.00 0.98
341 361 7.750947 AAGTACTCCCTTGGTTCACTATTAT 57.249 36.000 0.00 0.00 0.00 1.28
342 362 7.750947 AGTACTCCCTTGGTTCACTATTATT 57.249 36.000 0.00 0.00 0.00 1.40
343 363 8.849543 AGTACTCCCTTGGTTCACTATTATTA 57.150 34.615 0.00 0.00 0.00 0.98
344 364 9.448587 AGTACTCCCTTGGTTCACTATTATTAT 57.551 33.333 0.00 0.00 0.00 1.28
380 400 4.545823 TTTTTCCGCTCTAGTGTGTTTG 57.454 40.909 4.78 0.00 0.00 2.93
381 401 2.902705 TTCCGCTCTAGTGTGTTTGT 57.097 45.000 4.78 0.00 0.00 2.83
382 402 2.902705 TCCGCTCTAGTGTGTTTGTT 57.097 45.000 4.78 0.00 0.00 2.83
383 403 2.750948 TCCGCTCTAGTGTGTTTGTTC 58.249 47.619 4.78 0.00 0.00 3.18
384 404 2.101750 TCCGCTCTAGTGTGTTTGTTCA 59.898 45.455 4.78 0.00 0.00 3.18
385 405 2.221055 CCGCTCTAGTGTGTTTGTTCAC 59.779 50.000 4.78 0.00 38.63 3.18
386 406 2.221055 CGCTCTAGTGTGTTTGTTCACC 59.779 50.000 0.00 0.00 37.51 4.02
387 407 2.548480 GCTCTAGTGTGTTTGTTCACCC 59.452 50.000 0.00 0.00 37.51 4.61
388 408 3.804036 CTCTAGTGTGTTTGTTCACCCA 58.196 45.455 0.00 0.00 37.51 4.51
389 409 4.389374 CTCTAGTGTGTTTGTTCACCCAT 58.611 43.478 0.00 0.00 37.51 4.00
390 410 4.787551 TCTAGTGTGTTTGTTCACCCATT 58.212 39.130 0.00 0.00 37.51 3.16
391 411 5.197451 TCTAGTGTGTTTGTTCACCCATTT 58.803 37.500 0.00 0.00 37.51 2.32
392 412 4.817318 AGTGTGTTTGTTCACCCATTTT 57.183 36.364 0.00 0.00 37.51 1.82
393 413 5.923733 AGTGTGTTTGTTCACCCATTTTA 57.076 34.783 0.00 0.00 37.51 1.52
394 414 6.478512 AGTGTGTTTGTTCACCCATTTTAT 57.521 33.333 0.00 0.00 37.51 1.40
395 415 6.883744 AGTGTGTTTGTTCACCCATTTTATT 58.116 32.000 0.00 0.00 37.51 1.40
396 416 6.983890 AGTGTGTTTGTTCACCCATTTTATTC 59.016 34.615 0.00 0.00 37.51 1.75
397 417 6.983890 GTGTGTTTGTTCACCCATTTTATTCT 59.016 34.615 0.00 0.00 37.51 2.40
398 418 6.983307 TGTGTTTGTTCACCCATTTTATTCTG 59.017 34.615 0.00 0.00 37.51 3.02
399 419 6.983890 GTGTTTGTTCACCCATTTTATTCTGT 59.016 34.615 0.00 0.00 32.81 3.41
400 420 8.138712 GTGTTTGTTCACCCATTTTATTCTGTA 58.861 33.333 0.00 0.00 32.81 2.74
401 421 8.865090 TGTTTGTTCACCCATTTTATTCTGTAT 58.135 29.630 0.00 0.00 0.00 2.29
402 422 9.139174 GTTTGTTCACCCATTTTATTCTGTATG 57.861 33.333 0.00 0.00 0.00 2.39
403 423 8.415950 TTGTTCACCCATTTTATTCTGTATGT 57.584 30.769 0.00 0.00 0.00 2.29
404 424 9.521841 TTGTTCACCCATTTTATTCTGTATGTA 57.478 29.630 0.00 0.00 0.00 2.29
405 425 9.173021 TGTTCACCCATTTTATTCTGTATGTAG 57.827 33.333 0.00 0.00 0.00 2.74
406 426 9.174166 GTTCACCCATTTTATTCTGTATGTAGT 57.826 33.333 0.00 0.00 0.00 2.73
407 427 8.958119 TCACCCATTTTATTCTGTATGTAGTC 57.042 34.615 0.00 0.00 0.00 2.59
408 428 7.990886 TCACCCATTTTATTCTGTATGTAGTCC 59.009 37.037 0.00 0.00 0.00 3.85
409 429 7.773224 CACCCATTTTATTCTGTATGTAGTCCA 59.227 37.037 0.00 0.00 0.00 4.02
410 430 8.502738 ACCCATTTTATTCTGTATGTAGTCCAT 58.497 33.333 0.00 0.00 37.58 3.41
449 469 9.936329 AAAACATCTTATAATAGTGAATGGGGT 57.064 29.630 0.00 0.00 0.00 4.95
452 472 9.615660 ACATCTTATAATAGTGAATGGGGTAGA 57.384 33.333 0.00 0.00 0.00 2.59
463 483 5.127682 GTGAATGGGGTAGAATCATTTTGCT 59.872 40.000 0.00 0.00 32.05 3.91
488 508 1.610379 GGGAAACAATGCCCTGCCT 60.610 57.895 0.00 0.00 41.31 4.75
492 512 1.892474 GAAACAATGCCCTGCCTGTTA 59.108 47.619 4.66 0.00 34.20 2.41
493 513 1.256812 AACAATGCCCTGCCTGTTAC 58.743 50.000 2.83 0.00 33.77 2.50
494 514 0.960364 ACAATGCCCTGCCTGTTACG 60.960 55.000 0.00 0.00 0.00 3.18
502 522 0.742281 CTGCCTGTTACGCAGCTCAT 60.742 55.000 0.00 0.00 46.54 2.90
504 524 0.804989 GCCTGTTACGCAGCTCATTT 59.195 50.000 0.00 0.00 43.71 2.32
505 525 1.200020 GCCTGTTACGCAGCTCATTTT 59.800 47.619 0.00 0.00 43.71 1.82
506 526 2.351738 GCCTGTTACGCAGCTCATTTTT 60.352 45.455 0.00 0.00 43.71 1.94
509 537 4.851558 CCTGTTACGCAGCTCATTTTTAAC 59.148 41.667 0.00 0.00 43.71 2.01
512 540 1.259316 CGCAGCTCATTTTTAACGGC 58.741 50.000 0.00 0.00 0.00 5.68
513 541 1.259316 GCAGCTCATTTTTAACGGCG 58.741 50.000 4.80 4.80 0.00 6.46
517 545 1.259316 CTCATTTTTAACGGCGCTGC 58.741 50.000 18.15 0.00 0.00 5.25
539 567 2.274437 CACCTTCTGTGTCATCGGATG 58.726 52.381 11.79 11.79 40.26 3.51
540 568 1.208052 ACCTTCTGTGTCATCGGATGG 59.792 52.381 17.42 1.82 41.14 3.51
541 569 1.482182 CCTTCTGTGTCATCGGATGGA 59.518 52.381 17.42 4.18 39.13 3.41
542 570 2.103771 CCTTCTGTGTCATCGGATGGAT 59.896 50.000 17.42 0.00 39.13 3.41
543 571 3.321968 CCTTCTGTGTCATCGGATGGATA 59.678 47.826 17.42 2.39 39.13 2.59
547 575 4.588528 TCTGTGTCATCGGATGGATATCAA 59.411 41.667 17.42 0.00 34.90 2.57
548 576 5.246883 TCTGTGTCATCGGATGGATATCAAT 59.753 40.000 17.42 0.00 34.90 2.57
549 577 6.437162 TCTGTGTCATCGGATGGATATCAATA 59.563 38.462 17.42 0.00 34.90 1.90
551 579 5.521735 GTGTCATCGGATGGATATCAATAGC 59.478 44.000 17.42 0.00 34.90 2.97
552 580 5.187576 TGTCATCGGATGGATATCAATAGCA 59.812 40.000 17.42 0.00 34.90 3.49
553 581 5.521735 GTCATCGGATGGATATCAATAGCAC 59.478 44.000 17.42 0.64 34.90 4.40
554 582 5.187576 TCATCGGATGGATATCAATAGCACA 59.812 40.000 17.42 0.00 34.90 4.57
556 584 6.053632 TCGGATGGATATCAATAGCACATT 57.946 37.500 4.83 0.00 34.90 2.71
557 585 6.475504 TCGGATGGATATCAATAGCACATTT 58.524 36.000 4.83 0.00 34.90 2.32
559 587 6.327934 GGATGGATATCAATAGCACATTTGC 58.672 40.000 4.83 0.00 41.05 3.68
560 588 6.025896 GATGGATATCAATAGCACATTTGCG 58.974 40.000 4.83 0.00 42.27 4.85
561 589 7.378882 GATGGATATCAATAGCACATTTGCGC 61.379 42.308 0.00 0.00 42.27 6.09
562 590 9.635915 GATGGATATCAATAGCACATTTGCGCA 62.636 40.741 5.66 5.66 42.27 6.09
580 646 3.295785 CGCACAGAGTCGAAGATATCAG 58.704 50.000 5.32 0.00 40.67 2.90
617 685 7.637907 GTCAAATGAAAGACGCATAGAGAATTC 59.362 37.037 0.00 0.00 0.00 2.17
627 695 4.976116 CGCATAGAGAATTCGTGTCACATA 59.024 41.667 3.42 0.00 0.00 2.29
650 720 2.684001 AATGCAGCACCATGGAAATG 57.316 45.000 21.47 14.09 0.00 2.32
655 725 1.475280 CAGCACCATGGAAATGGACAG 59.525 52.381 21.47 2.74 44.39 3.51
867 957 1.301558 CAGATCTCCATCCTGCGGC 60.302 63.158 0.00 0.00 0.00 6.53
871 961 4.247380 CTCCATCCTGCGGCCTCC 62.247 72.222 0.00 0.00 0.00 4.30
899 989 3.174265 CCCATCCTCCCCTGCTCC 61.174 72.222 0.00 0.00 0.00 4.70
950 1040 3.089874 CGCTCCCTCCATTCCCCA 61.090 66.667 0.00 0.00 0.00 4.96
1037 1132 3.532155 CTTCTCCCTCGGCCTCGG 61.532 72.222 0.00 0.00 36.95 4.63
1479 1593 2.504244 CCGTCGTTCTCACTCGGC 60.504 66.667 0.00 0.00 33.53 5.54
1503 1617 4.018796 GACGACGACGACGACTTC 57.981 61.111 25.15 9.57 42.66 3.01
1521 1638 4.114997 GTTGCCGCCGGAACCATG 62.115 66.667 7.68 0.00 0.00 3.66
1761 1878 1.074471 TATGGTGCCTCCTCCTCCC 60.074 63.158 0.00 0.00 37.07 4.30
1767 1884 4.179599 CCTCCTCCTCCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
1788 1920 2.688666 CCTCCTAGGGCAGCACCA 60.689 66.667 9.46 0.00 42.05 4.17
1874 2006 2.603560 GCTACGAGGACGAAATTGAAGG 59.396 50.000 0.00 0.00 42.66 3.46
1937 2069 6.071952 GCTTGTCTCTATTTGTGGAATTTCCA 60.072 38.462 14.24 14.24 45.98 3.53
1984 2116 7.411804 GGTGTTTGTTACTAATCATGCAATTGC 60.412 37.037 23.69 23.69 42.50 3.56
1989 2121 7.257003 TGTTACTAATCATGCAATTGCGATTT 58.743 30.769 27.50 19.52 45.83 2.17
1991 2123 8.682016 GTTACTAATCATGCAATTGCGATTTAC 58.318 33.333 27.50 19.33 45.83 2.01
1992 2124 7.031226 ACTAATCATGCAATTGCGATTTACT 57.969 32.000 27.50 13.74 45.83 2.24
1993 2125 7.134815 ACTAATCATGCAATTGCGATTTACTC 58.865 34.615 27.50 3.58 45.83 2.59
1994 2126 4.291540 TCATGCAATTGCGATTTACTCC 57.708 40.909 24.58 0.00 45.83 3.85
1995 2127 3.066621 TCATGCAATTGCGATTTACTCCC 59.933 43.478 24.58 0.00 45.83 4.30
1996 2128 2.722094 TGCAATTGCGATTTACTCCCT 58.278 42.857 24.58 0.00 45.83 4.20
1997 2129 2.682856 TGCAATTGCGATTTACTCCCTC 59.317 45.455 24.58 0.00 45.83 4.30
1998 2130 2.033424 GCAATTGCGATTTACTCCCTCC 59.967 50.000 15.87 0.00 0.00 4.30
1999 2131 2.240493 ATTGCGATTTACTCCCTCCG 57.760 50.000 0.00 0.00 0.00 4.63
2000 2132 0.899720 TTGCGATTTACTCCCTCCGT 59.100 50.000 0.00 0.00 0.00 4.69
2001 2133 0.458669 TGCGATTTACTCCCTCCGTC 59.541 55.000 0.00 0.00 0.00 4.79
2002 2134 0.249363 GCGATTTACTCCCTCCGTCC 60.249 60.000 0.00 0.00 0.00 4.79
2003 2135 0.030369 CGATTTACTCCCTCCGTCCG 59.970 60.000 0.00 0.00 0.00 4.79
2004 2136 0.388294 GATTTACTCCCTCCGTCCGG 59.612 60.000 0.00 0.00 0.00 5.14
2005 2137 0.032813 ATTTACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
2006 2138 0.251742 TTTACTCCCTCCGTCCGGAA 60.252 55.000 5.23 0.00 44.66 4.30
2007 2139 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
2008 2140 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2009 2141 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2010 2142 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2011 2143 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2012 2144 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2013 2145 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2014 2146 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2015 2147 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2016 2148 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2017 2149 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2018 2150 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
2019 2151 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
2020 2152 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
2021 2153 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
2022 2154 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
2023 2155 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
2024 2156 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
2025 2157 6.035843 CCGGAAATACTTGTCATTGAAATGG 58.964 40.000 0.00 0.00 37.03 3.16
2026 2158 6.127758 CCGGAAATACTTGTCATTGAAATGGA 60.128 38.462 0.00 0.00 37.03 3.41
2027 2159 7.416664 CCGGAAATACTTGTCATTGAAATGGAT 60.417 37.037 0.00 0.00 37.03 3.41
2028 2160 7.433131 CGGAAATACTTGTCATTGAAATGGATG 59.567 37.037 3.31 0.00 37.03 3.51
2029 2161 8.253113 GGAAATACTTGTCATTGAAATGGATGT 58.747 33.333 3.31 2.77 37.03 3.06
2033 2165 9.857656 ATACTTGTCATTGAAATGGATGTATCT 57.142 29.630 3.31 0.00 37.03 1.98
2035 2167 9.334947 ACTTGTCATTGAAATGGATGTATCTAG 57.665 33.333 3.31 0.00 37.03 2.43
2036 2168 9.551734 CTTGTCATTGAAATGGATGTATCTAGA 57.448 33.333 0.00 0.00 37.03 2.43
2038 2170 9.498176 TGTCATTGAAATGGATGTATCTAGATG 57.502 33.333 15.79 0.00 37.03 2.90
2039 2171 9.499479 GTCATTGAAATGGATGTATCTAGATGT 57.501 33.333 15.79 1.25 37.03 3.06
2070 2202 8.682936 AGTTGTAGATACATCCATTTTCATCC 57.317 34.615 0.00 0.00 35.89 3.51
2071 2203 8.274322 AGTTGTAGATACATCCATTTTCATCCA 58.726 33.333 0.00 0.00 35.89 3.41
2072 2204 9.071276 GTTGTAGATACATCCATTTTCATCCAT 57.929 33.333 0.00 0.00 35.89 3.41
2073 2205 9.645128 TTGTAGATACATCCATTTTCATCCATT 57.355 29.630 0.00 0.00 35.89 3.16
2074 2206 9.645128 TGTAGATACATCCATTTTCATCCATTT 57.355 29.630 0.00 0.00 0.00 2.32
2077 2209 9.204337 AGATACATCCATTTTCATCCATTTTGA 57.796 29.630 0.00 0.00 0.00 2.69
2078 2210 9.991906 GATACATCCATTTTCATCCATTTTGAT 57.008 29.630 0.00 0.00 0.00 2.57
2079 2211 9.772973 ATACATCCATTTTCATCCATTTTGATG 57.227 29.630 0.00 0.00 42.84 3.07
2091 2223 8.469200 TCATCCATTTTGATGACAAGTATTTCC 58.531 33.333 0.00 0.00 44.65 3.13
2092 2224 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
2093 2225 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
2094 2226 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
2095 2227 7.416664 CCATTTTGATGACAAGTATTTCCGGAT 60.417 37.037 4.15 0.00 37.32 4.18
2096 2228 6.435430 TTTGATGACAAGTATTTCCGGATG 57.565 37.500 4.15 0.97 37.32 3.51
2097 2229 4.450976 TGATGACAAGTATTTCCGGATGG 58.549 43.478 4.15 0.00 0.00 3.51
2098 2230 4.163268 TGATGACAAGTATTTCCGGATGGA 59.837 41.667 4.15 0.00 44.61 3.41
2099 2231 8.543352 TTTGATGACAAGTATTTCCGGATGGAG 61.543 40.741 4.15 0.00 40.39 3.86
2134 2266 5.139001 TCCACATGCCTGCATAAATCAATA 58.861 37.500 3.98 0.00 34.91 1.90
2139 2271 6.425721 ACATGCCTGCATAAATCAATAAATGC 59.574 34.615 3.98 0.00 43.92 3.56
2302 2437 4.021894 CCAGGTAGTGTAGCATCCAGATAC 60.022 50.000 0.00 0.00 39.53 2.24
2316 2451 6.183360 GCATCCAGATACTTAAACATGCCTTT 60.183 38.462 0.00 0.00 31.17 3.11
2387 2522 9.471702 AAAGTTGATTCATTCTGGATCTGTATT 57.528 29.630 0.00 0.00 0.00 1.89
2417 2553 9.474920 CAAAAACAGCTGAAATTTACCTAATCA 57.525 29.630 23.35 0.00 0.00 2.57
2434 2570 1.527034 TCAGCCTTGCACACAGATTC 58.473 50.000 0.00 0.00 0.00 2.52
2439 2575 3.322828 AGCCTTGCACACAGATTCATTTT 59.677 39.130 0.00 0.00 0.00 1.82
2446 2582 5.865013 TGCACACAGATTCATTTTGCAATAG 59.135 36.000 0.00 0.00 35.65 1.73
2498 2634 9.214953 GACATTTTCTGCGTAATGAGAAATAAG 57.785 33.333 0.00 0.00 37.87 1.73
2523 2659 7.284351 GCAGTTTCGTATATTATGTCTGCTTC 58.716 38.462 0.00 0.00 41.31 3.86
2533 2669 6.822667 ATTATGTCTGCTTCATGAACAACA 57.177 33.333 3.38 13.39 0.00 3.33
2579 2715 1.814394 TGATCCATGACAGCAAAGTGC 59.186 47.619 0.00 0.00 45.46 4.40
2580 2716 1.133790 GATCCATGACAGCAAAGTGCC 59.866 52.381 0.00 0.00 46.52 5.01
2581 2717 0.895100 TCCATGACAGCAAAGTGCCC 60.895 55.000 0.00 0.00 46.52 5.36
2759 2898 3.618690 ACTGTTTCCTAGCCTAAGCAG 57.381 47.619 10.77 10.77 43.56 4.24
2846 2985 4.074970 ACTGAATCGACCTGCTTCATTTT 58.925 39.130 0.00 0.00 32.64 1.82
2917 3056 5.928839 ACTATTTTCTATGCGATGTAGCTGG 59.071 40.000 0.00 0.00 38.13 4.85
2944 3083 6.533012 ACTGAATCATCTGAGTATGTTGAACG 59.467 38.462 0.00 0.00 0.00 3.95
2945 3084 6.630071 TGAATCATCTGAGTATGTTGAACGA 58.370 36.000 0.00 0.00 0.00 3.85
2946 3085 7.096551 TGAATCATCTGAGTATGTTGAACGAA 58.903 34.615 0.00 0.00 0.00 3.85
2947 3086 6.893958 ATCATCTGAGTATGTTGAACGAAC 57.106 37.500 0.00 0.00 34.84 3.95
2991 3130 3.446570 GGTGCTCACATGCCCTGC 61.447 66.667 2.21 0.00 0.00 4.85
3029 3168 0.179113 ACGTGGCTGCAAAAAGTTGG 60.179 50.000 0.50 0.00 35.10 3.77
3115 3254 9.932207 AGCATTCTGAAATGAAATTATCAACAA 57.068 25.926 2.44 0.00 44.25 2.83
3141 3280 3.819337 CCTGTGAGCAAATCCTGATATGG 59.181 47.826 0.00 0.00 0.00 2.74
3148 3287 4.576463 AGCAAATCCTGATATGGACGAAAC 59.424 41.667 0.00 0.00 39.17 2.78
3182 3321 6.482308 TGTTTTCTCTCAACTGTTAGGTTAGC 59.518 38.462 0.00 0.00 0.00 3.09
3229 3369 8.558973 TGTGTTCCAGAAAATGAATTTGTTTT 57.441 26.923 2.52 2.52 0.00 2.43
3284 3424 7.876582 GTGTTGTCAGTAAAGGGAGTAAATAGT 59.123 37.037 0.00 0.00 0.00 2.12
3308 3448 5.236047 TGGTGTGCTCAAACAAATTTTATGC 59.764 36.000 0.00 0.00 0.00 3.14
3364 3504 6.527057 TTAATCCATGCATTGACAACATCA 57.473 33.333 2.00 0.00 34.65 3.07
3381 3521 6.476380 ACAACATCAGCAATAAAGTTGTTGTG 59.524 34.615 15.33 5.55 46.23 3.33
3388 3528 8.409371 TCAGCAATAAAGTTGTTGTGATGTTTA 58.591 29.630 4.89 0.00 33.29 2.01
3524 3664 1.343142 TGAACCGCAGTGTACTGATGT 59.657 47.619 15.78 8.33 46.59 3.06
3605 3745 5.335269 GCTTCAAAACCTCTAGAAGAAAGCC 60.335 44.000 0.00 0.00 39.78 4.35
3910 4050 3.559655 TCAAATCTGTCCAACACTCAACG 59.440 43.478 0.00 0.00 0.00 4.10
3990 4130 2.755103 GCTCTGTTAGTGAAATTGGGGG 59.245 50.000 0.00 0.00 0.00 5.40
4438 4578 1.344065 TGGCAGGAAGGTAAGAACGA 58.656 50.000 0.00 0.00 0.00 3.85
4442 4582 4.120589 GGCAGGAAGGTAAGAACGATTAG 58.879 47.826 0.00 0.00 0.00 1.73
4568 4708 7.757624 TGTTAATGTCCTGAACAAGTTTTTGAC 59.242 33.333 0.00 0.00 42.37 3.18
4599 4739 2.485814 GCCTTCTAGCCACTTCTGTTTG 59.514 50.000 0.00 0.00 0.00 2.93
4665 4805 6.086871 GCTGCAGGTTTATGTCTCTAAAAAC 58.913 40.000 17.12 0.00 0.00 2.43
4725 4865 8.925700 CAATACAAAAAGGTAAAATGCTTCTCC 58.074 33.333 0.00 0.00 0.00 3.71
4852 4993 0.883814 GCCATTCTGCCTGATCTCGG 60.884 60.000 0.00 0.00 0.00 4.63
4929 5070 8.286097 GGATTGTTTATTCTATAGCTTCAGCAC 58.714 37.037 0.75 0.00 45.16 4.40
4991 5595 1.915489 TGTGGCTGGGATGATTGTAGT 59.085 47.619 0.00 0.00 0.00 2.73
5063 5667 7.704578 ATCAGTGCTTTCTTAGAGTAGTGTA 57.295 36.000 0.00 0.00 33.54 2.90
5117 5721 1.196808 GTCCACTGCATTGTTGGTACG 59.803 52.381 3.14 0.00 0.00 3.67
5260 5867 1.230635 CCAGTTCCAGTTCCACAGCG 61.231 60.000 0.00 0.00 0.00 5.18
5296 5903 1.131315 GCCAAAAGGAAGCGATGAGAC 59.869 52.381 0.00 0.00 0.00 3.36
5308 5915 1.646189 GATGAGACAAAGAGGTCGGC 58.354 55.000 0.00 0.00 42.62 5.54
5315 5922 2.147387 AAAGAGGTCGGCTGGTGGT 61.147 57.895 0.00 0.00 0.00 4.16
5319 5926 3.717294 GGTCGGCTGGTGGTCCAT 61.717 66.667 0.00 0.00 43.43 3.41
5386 5997 3.349927 CCCTGTGCATTTCATCTCTCAA 58.650 45.455 0.00 0.00 0.00 3.02
5388 5999 4.219070 CCCTGTGCATTTCATCTCTCAAAA 59.781 41.667 0.00 0.00 0.00 2.44
5479 6091 7.503230 TCGAAACCCTTCTTTGTTATTAAGGTT 59.497 33.333 0.00 0.00 37.40 3.50
5485 6097 8.403236 CCCTTCTTTGTTATTAAGGTTATTCGG 58.597 37.037 0.00 0.00 37.40 4.30
5488 6100 8.188531 TCTTTGTTATTAAGGTTATTCGGACG 57.811 34.615 0.00 0.00 0.00 4.79
5504 6116 3.005050 TCGGACGACTCAACTGTGTAAAT 59.995 43.478 0.00 0.00 0.00 1.40
5520 6135 5.008811 TGTGTAAATTGTTGTTAAGGGACGG 59.991 40.000 0.00 0.00 0.00 4.79
5533 6148 3.443045 GACGGAAGGACGGGCGTA 61.443 66.667 0.00 0.00 38.39 4.42
5562 6177 4.846367 TCTTTATGGAGGTGATGGATAGGG 59.154 45.833 0.00 0.00 0.00 3.53
5569 6184 4.020128 GGAGGTGATGGATAGGGACATTAC 60.020 50.000 0.00 0.00 34.11 1.89
5592 6207 4.244862 GGGTCTTAATGCATGTTTTGTGG 58.755 43.478 0.00 0.00 0.00 4.17
5600 6215 5.610235 ATGCATGTTTTGTGGTAATTTGC 57.390 34.783 0.00 0.00 0.00 3.68
5615 6230 8.135529 GTGGTAATTTGCATTCCTTTATACTCC 58.864 37.037 0.00 0.00 0.00 3.85
5640 6256 8.487970 CCGCAGTATGTAAGTTGAGTTAATATG 58.512 37.037 0.00 0.00 39.31 1.78
5664 6280 3.686622 TTCAACGCAGCTGAACTCT 57.313 47.368 20.43 0.00 37.72 3.24
5665 6281 2.812358 TTCAACGCAGCTGAACTCTA 57.188 45.000 20.43 0.00 37.72 2.43
5742 6358 9.991388 CATTGGAATATTTTATTGCAACTTTGG 57.009 29.630 13.94 2.44 40.99 3.28
5810 6426 5.197451 TCTAACAAACATCAACCACCACTT 58.803 37.500 0.00 0.00 0.00 3.16
6034 7054 1.923356 AACGGGATCATTTGCTTGGT 58.077 45.000 0.00 0.00 0.00 3.67
6036 7056 1.271871 ACGGGATCATTTGCTTGGTGA 60.272 47.619 0.00 0.00 0.00 4.02
6044 7064 7.750229 GATCATTTGCTTGGTGATCCTATAA 57.250 36.000 3.79 0.00 41.35 0.98
6090 7110 2.003301 GCTCTAAAGGCCAGAACGAAG 58.997 52.381 5.01 0.00 0.00 3.79
6222 7243 9.053840 CATAGCCATCATATCCATTGAAGTATC 57.946 37.037 0.00 0.00 0.00 2.24
6224 7245 5.220739 GCCATCATATCCATTGAAGTATCGC 60.221 44.000 0.00 0.00 0.00 4.58
6225 7246 5.876460 CCATCATATCCATTGAAGTATCGCA 59.124 40.000 0.00 0.00 0.00 5.10
6226 7247 6.541278 CCATCATATCCATTGAAGTATCGCAT 59.459 38.462 0.00 0.00 0.00 4.73
6227 7248 7.066645 CCATCATATCCATTGAAGTATCGCATT 59.933 37.037 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 174 5.523552 GCAGCTTACAAACCACAAAGAAAAT 59.476 36.000 0.00 0.00 0.00 1.82
188 190 1.839424 ACAATTCCCAGGCAGCTTAC 58.161 50.000 0.00 0.00 0.00 2.34
206 226 6.218746 ACTTTCATGCAGAATGAGGAAAAAC 58.781 36.000 14.36 0.00 46.01 2.43
213 233 4.806330 AGCAAACTTTCATGCAGAATGAG 58.194 39.130 14.36 7.15 46.01 2.90
234 254 9.862585 CCACGATTTTTAAAGAAAATTTCCAAG 57.137 29.630 1.57 0.00 34.54 3.61
237 257 8.373048 ACCCACGATTTTTAAAGAAAATTTCC 57.627 30.769 1.57 0.00 34.54 3.13
239 259 9.607988 AGAACCCACGATTTTTAAAGAAAATTT 57.392 25.926 0.00 0.00 34.54 1.82
251 271 4.321675 GGCATGTTTAGAACCCACGATTTT 60.322 41.667 0.00 0.00 0.00 1.82
260 280 3.146066 TGACTGTGGCATGTTTAGAACC 58.854 45.455 0.00 0.00 0.00 3.62
264 284 3.814842 TGAGTTGACTGTGGCATGTTTAG 59.185 43.478 0.00 0.00 0.00 1.85
265 285 3.814625 TGAGTTGACTGTGGCATGTTTA 58.185 40.909 0.00 0.00 0.00 2.01
266 286 2.653726 TGAGTTGACTGTGGCATGTTT 58.346 42.857 0.00 0.00 0.00 2.83
267 287 2.346766 TGAGTTGACTGTGGCATGTT 57.653 45.000 0.00 0.00 0.00 2.71
277 297 2.211250 AGGCATGCATTGAGTTGACT 57.789 45.000 21.36 0.00 0.00 3.41
281 301 3.445096 GGAAACTAGGCATGCATTGAGTT 59.555 43.478 21.36 16.78 0.00 3.01
311 331 6.070366 AGTGAACCAAGGGAGTACTTAATACC 60.070 42.308 0.00 0.00 33.85 2.73
313 333 8.849543 ATAGTGAACCAAGGGAGTACTTAATA 57.150 34.615 0.00 0.00 0.00 0.98
315 335 7.563724 AATAGTGAACCAAGGGAGTACTTAA 57.436 36.000 0.00 0.00 0.00 1.85
316 336 8.849543 ATAATAGTGAACCAAGGGAGTACTTA 57.150 34.615 0.00 0.00 0.00 2.24
359 379 3.942748 ACAAACACACTAGAGCGGAAAAA 59.057 39.130 0.00 0.00 0.00 1.94
360 380 3.537580 ACAAACACACTAGAGCGGAAAA 58.462 40.909 0.00 0.00 0.00 2.29
361 381 3.188159 ACAAACACACTAGAGCGGAAA 57.812 42.857 0.00 0.00 0.00 3.13
362 382 2.902705 ACAAACACACTAGAGCGGAA 57.097 45.000 0.00 0.00 0.00 4.30
363 383 2.101750 TGAACAAACACACTAGAGCGGA 59.898 45.455 0.00 0.00 0.00 5.54
364 384 2.221055 GTGAACAAACACACTAGAGCGG 59.779 50.000 0.00 0.00 40.11 5.52
365 385 2.221055 GGTGAACAAACACACTAGAGCG 59.779 50.000 0.00 0.00 41.88 5.03
366 386 2.548480 GGGTGAACAAACACACTAGAGC 59.452 50.000 0.00 0.00 40.56 4.09
367 387 3.804036 TGGGTGAACAAACACACTAGAG 58.196 45.455 0.00 0.00 43.64 2.43
368 388 3.916359 TGGGTGAACAAACACACTAGA 57.084 42.857 0.00 0.00 43.64 2.43
369 389 5.514274 AAATGGGTGAACAAACACACTAG 57.486 39.130 0.00 0.00 43.64 2.57
370 390 5.923733 AAAATGGGTGAACAAACACACTA 57.076 34.783 0.00 0.00 43.64 2.74
371 391 4.817318 AAAATGGGTGAACAAACACACT 57.183 36.364 0.00 0.00 43.64 3.55
372 392 6.983890 AGAATAAAATGGGTGAACAAACACAC 59.016 34.615 0.00 0.00 43.57 3.82
373 393 6.983307 CAGAATAAAATGGGTGAACAAACACA 59.017 34.615 0.00 0.00 41.88 3.72
374 394 6.983890 ACAGAATAAAATGGGTGAACAAACAC 59.016 34.615 0.00 0.00 39.70 3.32
375 395 7.118496 ACAGAATAAAATGGGTGAACAAACA 57.882 32.000 0.00 0.00 0.00 2.83
376 396 9.139174 CATACAGAATAAAATGGGTGAACAAAC 57.861 33.333 0.00 0.00 0.00 2.93
377 397 8.865090 ACATACAGAATAAAATGGGTGAACAAA 58.135 29.630 0.00 0.00 0.00 2.83
378 398 8.415950 ACATACAGAATAAAATGGGTGAACAA 57.584 30.769 0.00 0.00 0.00 2.83
379 399 9.173021 CTACATACAGAATAAAATGGGTGAACA 57.827 33.333 0.00 0.00 0.00 3.18
380 400 9.174166 ACTACATACAGAATAAAATGGGTGAAC 57.826 33.333 0.00 0.00 0.00 3.18
381 401 9.391006 GACTACATACAGAATAAAATGGGTGAA 57.609 33.333 0.00 0.00 0.00 3.18
382 402 7.990886 GGACTACATACAGAATAAAATGGGTGA 59.009 37.037 0.00 0.00 0.00 4.02
383 403 7.773224 TGGACTACATACAGAATAAAATGGGTG 59.227 37.037 0.00 0.00 0.00 4.61
384 404 7.867921 TGGACTACATACAGAATAAAATGGGT 58.132 34.615 0.00 0.00 0.00 4.51
385 405 8.924511 ATGGACTACATACAGAATAAAATGGG 57.075 34.615 0.00 0.00 38.26 4.00
423 443 9.936329 ACCCCATTCACTATTATAAGATGTTTT 57.064 29.630 0.00 0.00 0.00 2.43
426 446 9.615660 TCTACCCCATTCACTATTATAAGATGT 57.384 33.333 0.00 0.00 0.00 3.06
435 455 8.917088 CAAAATGATTCTACCCCATTCACTATT 58.083 33.333 0.00 0.00 30.93 1.73
436 456 7.014615 GCAAAATGATTCTACCCCATTCACTAT 59.985 37.037 0.00 0.00 30.93 2.12
437 457 6.321181 GCAAAATGATTCTACCCCATTCACTA 59.679 38.462 0.00 0.00 30.93 2.74
438 458 5.127682 GCAAAATGATTCTACCCCATTCACT 59.872 40.000 0.00 0.00 30.93 3.41
439 459 5.127682 AGCAAAATGATTCTACCCCATTCAC 59.872 40.000 0.00 0.00 30.93 3.18
440 460 5.271598 AGCAAAATGATTCTACCCCATTCA 58.728 37.500 0.00 0.00 30.93 2.57
441 461 5.221322 GGAGCAAAATGATTCTACCCCATTC 60.221 44.000 0.00 0.00 30.93 2.67
442 462 4.651045 GGAGCAAAATGATTCTACCCCATT 59.349 41.667 0.00 0.00 32.46 3.16
443 463 4.218312 GGAGCAAAATGATTCTACCCCAT 58.782 43.478 0.00 0.00 0.00 4.00
444 464 3.011144 TGGAGCAAAATGATTCTACCCCA 59.989 43.478 0.00 0.00 0.00 4.96
445 465 3.631250 TGGAGCAAAATGATTCTACCCC 58.369 45.455 0.00 0.00 0.00 4.95
446 466 4.526970 TCTGGAGCAAAATGATTCTACCC 58.473 43.478 0.00 0.00 0.00 3.69
447 467 5.067023 CCTTCTGGAGCAAAATGATTCTACC 59.933 44.000 0.00 0.00 34.57 3.18
448 468 5.067023 CCCTTCTGGAGCAAAATGATTCTAC 59.933 44.000 0.00 0.00 35.39 2.59
449 469 5.044919 TCCCTTCTGGAGCAAAATGATTCTA 60.045 40.000 0.00 0.00 38.61 2.10
450 470 4.021916 CCCTTCTGGAGCAAAATGATTCT 58.978 43.478 0.00 0.00 35.39 2.40
451 471 4.019174 TCCCTTCTGGAGCAAAATGATTC 58.981 43.478 0.00 0.00 38.61 2.52
452 472 4.051661 TCCCTTCTGGAGCAAAATGATT 57.948 40.909 0.00 0.00 38.61 2.57
453 473 3.744940 TCCCTTCTGGAGCAAAATGAT 57.255 42.857 0.00 0.00 38.61 2.45
454 474 3.524095 TTCCCTTCTGGAGCAAAATGA 57.476 42.857 0.00 0.00 46.24 2.57
455 475 3.321682 TGTTTCCCTTCTGGAGCAAAATG 59.678 43.478 0.00 0.00 46.24 2.32
456 476 3.575805 TGTTTCCCTTCTGGAGCAAAAT 58.424 40.909 0.00 0.00 46.24 1.82
457 477 3.025322 TGTTTCCCTTCTGGAGCAAAA 57.975 42.857 0.00 0.00 46.24 2.44
463 483 1.549950 GGGCATTGTTTCCCTTCTGGA 60.550 52.381 0.00 0.00 43.18 3.86
479 499 3.947459 TGCGTAACAGGCAGGGCA 61.947 61.111 0.00 0.00 33.67 5.36
488 508 4.459606 CGTTAAAAATGAGCTGCGTAACA 58.540 39.130 0.00 0.00 0.00 2.41
492 512 1.401018 GCCGTTAAAAATGAGCTGCGT 60.401 47.619 0.00 0.00 0.00 5.24
493 513 1.259316 GCCGTTAAAAATGAGCTGCG 58.741 50.000 0.00 0.00 0.00 5.18
494 514 1.259316 CGCCGTTAAAAATGAGCTGC 58.741 50.000 0.00 0.00 0.00 5.25
502 522 0.592754 GTGTGCAGCGCCGTTAAAAA 60.593 50.000 2.29 0.00 0.00 1.94
504 524 2.634777 GTGTGCAGCGCCGTTAAA 59.365 55.556 2.29 0.00 0.00 1.52
505 525 3.350612 GGTGTGCAGCGCCGTTAA 61.351 61.111 2.29 0.00 38.09 2.01
531 559 5.422145 TGTGCTATTGATATCCATCCGATG 58.578 41.667 0.00 0.93 31.92 3.84
534 562 6.549061 CAAATGTGCTATTGATATCCATCCG 58.451 40.000 0.00 0.00 0.00 4.18
551 579 0.451628 CGACTCTGTGCGCAAATGTG 60.452 55.000 14.00 8.81 0.00 3.21
552 580 0.599991 TCGACTCTGTGCGCAAATGT 60.600 50.000 14.00 9.12 0.00 2.71
553 581 0.512518 TTCGACTCTGTGCGCAAATG 59.487 50.000 14.00 5.28 0.00 2.32
554 582 0.792640 CTTCGACTCTGTGCGCAAAT 59.207 50.000 14.00 0.00 0.00 2.32
556 584 0.038251 ATCTTCGACTCTGTGCGCAA 60.038 50.000 14.00 1.19 0.00 4.85
557 585 0.808755 TATCTTCGACTCTGTGCGCA 59.191 50.000 5.66 5.66 0.00 6.09
559 587 3.002759 TCTGATATCTTCGACTCTGTGCG 59.997 47.826 3.98 0.00 0.00 5.34
560 588 4.286910 GTCTGATATCTTCGACTCTGTGC 58.713 47.826 3.98 0.00 0.00 4.57
561 589 4.522877 CGTCTGATATCTTCGACTCTGTG 58.477 47.826 3.98 0.00 0.00 3.66
562 590 3.562141 CCGTCTGATATCTTCGACTCTGT 59.438 47.826 3.98 0.00 0.00 3.41
563 591 3.810386 TCCGTCTGATATCTTCGACTCTG 59.190 47.826 3.98 1.37 0.00 3.35
565 593 4.434989 CGATCCGTCTGATATCTTCGACTC 60.435 50.000 3.98 5.72 32.41 3.36
580 646 1.640428 TCATTTGACAGCGATCCGTC 58.360 50.000 0.00 0.00 0.00 4.79
595 661 5.812642 ACGAATTCTCTATGCGTCTTTCATT 59.187 36.000 3.52 0.00 45.59 2.57
632 700 0.828022 CCATTTCCATGGTGCTGCAT 59.172 50.000 12.58 0.00 44.81 3.96
650 720 3.058224 GTGGACTTGTAAATGTGCTGTCC 60.058 47.826 8.84 8.84 41.81 4.02
655 725 1.265635 TGCGTGGACTTGTAAATGTGC 59.734 47.619 0.00 0.00 0.00 4.57
899 989 1.211709 GGTGGGATTTGGCGTTTCG 59.788 57.895 0.00 0.00 0.00 3.46
950 1040 1.497716 GGGTTAGGGGATCGGGATTTT 59.502 52.381 0.00 0.00 0.00 1.82
1122 1217 1.065053 TCGAGACCCAGAGAGAAGGAG 60.065 57.143 0.00 0.00 0.00 3.69
1227 1334 4.332543 AGGGAGAACGAGGGGGCA 62.333 66.667 0.00 0.00 0.00 5.36
1460 1574 2.254350 CGAGTGAGAACGACGGCA 59.746 61.111 0.00 0.00 0.00 5.69
1464 1578 1.134530 CGATGCCGAGTGAGAACGAC 61.135 60.000 0.00 0.00 38.22 4.34
1504 1618 4.114997 CATGGTTCCGGCGGCAAC 62.115 66.667 23.83 23.88 0.00 4.17
1550 1667 0.382515 CCTCCTCAGTCGATTCGTCC 59.617 60.000 5.89 0.00 0.00 4.79
1565 1682 4.097361 GACCCCTCCGCAACCTCC 62.097 72.222 0.00 0.00 0.00 4.30
1689 1806 3.744719 CGGTTCGTCTCCGGCTGA 61.745 66.667 0.00 0.00 43.68 4.26
1740 1857 1.484065 GGAGGAGGAGGCACCATAGAT 60.484 57.143 3.18 0.00 42.04 1.98
1748 1865 4.095400 GAGGGGGAGGAGGAGGCA 62.095 72.222 0.00 0.00 0.00 4.75
1761 1878 1.237458 CCTAGGAGGAAGGGGAGGG 59.763 68.421 1.05 0.00 37.67 4.30
1767 1884 1.690633 TGCTGCCCTAGGAGGAAGG 60.691 63.158 11.48 0.00 37.67 3.46
1788 1920 3.400054 GCTTCCGTAGCCAGGGGT 61.400 66.667 0.00 0.00 44.48 4.95
1836 1968 2.212752 AGCTCCCAATATCCCCAAGA 57.787 50.000 0.00 0.00 0.00 3.02
1874 2006 0.033504 TGGCTCCTCGTCACTGAAAC 59.966 55.000 0.00 0.00 0.00 2.78
1937 2069 6.164176 CACCTCTTAAGTAACGGAATCAAGT 58.836 40.000 1.63 0.00 0.00 3.16
1938 2070 6.164176 ACACCTCTTAAGTAACGGAATCAAG 58.836 40.000 1.63 0.00 0.00 3.02
1941 2073 6.426025 ACAAACACCTCTTAAGTAACGGAATC 59.574 38.462 1.63 0.00 0.00 2.52
1946 2078 7.704789 AGTAACAAACACCTCTTAAGTAACG 57.295 36.000 1.63 0.00 0.00 3.18
1984 2116 0.030369 CGGACGGAGGGAGTAAATCG 59.970 60.000 0.00 0.00 0.00 3.34
1989 2121 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1991 2123 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1992 2124 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1993 2125 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1994 2126 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1995 2127 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1996 2128 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1997 2129 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1998 2130 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
1999 2131 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
2000 2132 6.127758 CCATTTCAATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 38.70 5.14
2001 2133 6.035843 CCATTTCAATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 38.70 5.14
2002 2134 6.851609 TCCATTTCAATGACAAGTATTTCCG 58.148 36.000 0.81 0.00 38.70 4.30
2003 2135 8.253113 ACATCCATTTCAATGACAAGTATTTCC 58.747 33.333 0.81 0.00 38.70 3.13
2007 2139 9.857656 AGATACATCCATTTCAATGACAAGTAT 57.142 29.630 0.81 4.50 38.70 2.12
2009 2141 9.334947 CTAGATACATCCATTTCAATGACAAGT 57.665 33.333 0.81 0.00 38.70 3.16
2010 2142 9.551734 TCTAGATACATCCATTTCAATGACAAG 57.448 33.333 0.81 0.00 38.70 3.16
2012 2144 9.498176 CATCTAGATACATCCATTTCAATGACA 57.502 33.333 4.54 0.00 38.70 3.58
2013 2145 9.499479 ACATCTAGATACATCCATTTCAATGAC 57.501 33.333 4.54 0.00 38.70 3.06
2044 2176 9.778741 GGATGAAAATGGATGTATCTACAACTA 57.221 33.333 0.00 0.00 39.99 2.24
2045 2177 8.274322 TGGATGAAAATGGATGTATCTACAACT 58.726 33.333 0.00 0.00 39.99 3.16
2046 2178 8.450578 TGGATGAAAATGGATGTATCTACAAC 57.549 34.615 0.00 0.00 39.99 3.32
2047 2179 9.645128 AATGGATGAAAATGGATGTATCTACAA 57.355 29.630 0.00 0.00 39.99 2.41
2048 2180 9.645128 AAATGGATGAAAATGGATGTATCTACA 57.355 29.630 0.00 0.00 40.98 2.74
2051 2183 9.204337 TCAAAATGGATGAAAATGGATGTATCT 57.796 29.630 0.00 0.00 0.00 1.98
2052 2184 9.991906 ATCAAAATGGATGAAAATGGATGTATC 57.008 29.630 0.00 0.00 0.00 2.24
2053 2185 9.772973 CATCAAAATGGATGAAAATGGATGTAT 57.227 29.630 0.00 0.00 46.00 2.29
2066 2198 7.433131 CGGAAATACTTGTCATCAAAATGGATG 59.567 37.037 0.00 0.00 44.78 3.51
2067 2199 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
2068 2200 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2069 2201 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2070 2202 6.851609 TCCGGAAATACTTGTCATCAAAATG 58.148 36.000 0.00 0.00 32.87 2.32
2071 2203 7.416664 CCATCCGGAAATACTTGTCATCAAAAT 60.417 37.037 9.01 0.00 32.87 1.82
2072 2204 6.127758 CCATCCGGAAATACTTGTCATCAAAA 60.128 38.462 9.01 0.00 32.87 2.44
2073 2205 5.356751 CCATCCGGAAATACTTGTCATCAAA 59.643 40.000 9.01 0.00 32.87 2.69
2074 2206 4.881273 CCATCCGGAAATACTTGTCATCAA 59.119 41.667 9.01 0.00 0.00 2.57
2075 2207 4.163268 TCCATCCGGAAATACTTGTCATCA 59.837 41.667 9.01 0.00 38.83 3.07
2076 2208 4.703897 TCCATCCGGAAATACTTGTCATC 58.296 43.478 9.01 0.00 38.83 2.92
2077 2209 4.444876 CCTCCATCCGGAAATACTTGTCAT 60.445 45.833 9.01 0.00 42.21 3.06
2078 2210 3.118408 CCTCCATCCGGAAATACTTGTCA 60.118 47.826 9.01 0.00 42.21 3.58
2079 2211 3.467803 CCTCCATCCGGAAATACTTGTC 58.532 50.000 9.01 0.00 42.21 3.18
2080 2212 2.172717 CCCTCCATCCGGAAATACTTGT 59.827 50.000 9.01 0.00 42.21 3.16
2081 2213 2.438021 TCCCTCCATCCGGAAATACTTG 59.562 50.000 9.01 0.00 42.21 3.16
2082 2214 2.706190 CTCCCTCCATCCGGAAATACTT 59.294 50.000 9.01 0.00 42.21 2.24
2083 2215 2.330216 CTCCCTCCATCCGGAAATACT 58.670 52.381 9.01 0.00 42.21 2.12
2084 2216 2.047830 ACTCCCTCCATCCGGAAATAC 58.952 52.381 9.01 0.00 42.21 1.89
2085 2217 2.489528 ACTCCCTCCATCCGGAAATA 57.510 50.000 9.01 0.00 42.21 1.40
2086 2218 2.047830 GTACTCCCTCCATCCGGAAAT 58.952 52.381 9.01 0.00 42.21 2.17
2087 2219 1.007963 AGTACTCCCTCCATCCGGAAA 59.992 52.381 9.01 0.00 42.21 3.13
2088 2220 0.635009 AGTACTCCCTCCATCCGGAA 59.365 55.000 9.01 0.00 42.21 4.30
2089 2221 1.526315 TAGTACTCCCTCCATCCGGA 58.474 55.000 6.61 6.61 39.79 5.14
2090 2222 2.041891 AGATAGTACTCCCTCCATCCGG 59.958 54.545 0.00 0.00 0.00 5.14
2091 2223 3.349022 GAGATAGTACTCCCTCCATCCG 58.651 54.545 0.00 0.00 0.00 4.18
2101 2233 3.553922 GCAGGCATGTGGAGATAGTACTC 60.554 52.174 0.00 0.00 36.31 2.59
2102 2234 2.366916 GCAGGCATGTGGAGATAGTACT 59.633 50.000 0.00 0.00 0.00 2.73
2103 2235 2.103094 TGCAGGCATGTGGAGATAGTAC 59.897 50.000 0.00 0.00 0.00 2.73
2364 2499 8.896744 TCAAATACAGATCCAGAATGAATCAAC 58.103 33.333 0.00 0.00 39.69 3.18
2387 2522 7.327214 AGGTAAATTTCAGCTGTTTTTGTCAA 58.673 30.769 14.67 0.00 0.00 3.18
2417 2553 2.211250 ATGAATCTGTGTGCAAGGCT 57.789 45.000 0.00 0.00 0.00 4.58
2446 2582 0.034670 AGGAGGGAAACAGCAGATGC 60.035 55.000 0.00 0.00 42.49 3.91
2498 2634 6.771188 AGCAGACATAATATACGAAACTGC 57.229 37.500 0.00 0.00 45.30 4.40
2580 2716 3.688159 GCAGCTGCTTGTTGGGGG 61.688 66.667 31.33 0.00 38.21 5.40
2593 2730 2.421424 GCATGTATATTGGGCTAGCAGC 59.579 50.000 18.24 0.00 41.46 5.25
2655 2792 3.340253 GTGTTTACCGGCGTGCGT 61.340 61.111 6.01 0.00 0.00 5.24
2739 2878 2.907042 ACTGCTTAGGCTAGGAAACAGT 59.093 45.455 7.97 8.47 39.59 3.55
2742 2881 3.935828 CTGAACTGCTTAGGCTAGGAAAC 59.064 47.826 7.97 0.00 39.59 2.78
2759 2898 9.677567 TTTGCTGTTTACATAATTTCTCTGAAC 57.322 29.630 0.00 0.00 0.00 3.18
2846 2985 6.098838 ACAGAATGCTGATACTATCACCAGAA 59.901 38.462 8.02 0.00 45.17 3.02
2897 3036 4.400529 TCCAGCTACATCGCATAGAAAA 57.599 40.909 0.00 0.00 0.00 2.29
2917 3056 8.386606 GTTCAACATACTCAGATGATTCAGTTC 58.613 37.037 0.00 0.00 0.00 3.01
2944 3083 9.221775 CGAAAACACTGCATATTATTAAGGTTC 57.778 33.333 0.00 0.00 0.00 3.62
2945 3084 8.736244 ACGAAAACACTGCATATTATTAAGGTT 58.264 29.630 0.00 0.00 0.00 3.50
2946 3085 8.276252 ACGAAAACACTGCATATTATTAAGGT 57.724 30.769 0.00 0.00 0.00 3.50
2947 3086 9.567848 AAACGAAAACACTGCATATTATTAAGG 57.432 29.630 0.00 0.00 0.00 2.69
3115 3254 0.773644 AGGATTTGCTCACAGGTGGT 59.226 50.000 0.00 0.00 0.00 4.16
3141 3280 8.836959 AGAGAAAACACTTAATTTGTTTCGTC 57.163 30.769 13.10 12.34 44.56 4.20
3148 3287 9.573133 AACAGTTGAGAGAAAACACTTAATTTG 57.427 29.630 0.00 0.00 0.00 2.32
3182 3321 6.805271 CACAGCACCTCAATTTAAATCTCTTG 59.195 38.462 0.10 0.00 0.00 3.02
3229 3369 5.652452 ACACATATCTGCTCAGTACACTACA 59.348 40.000 0.00 0.00 0.00 2.74
3284 3424 5.236047 GCATAAAATTTGTTTGAGCACACCA 59.764 36.000 0.00 0.00 0.00 4.17
3308 3448 4.093556 GCTAAAGGAAAAGGATCGTGTCTG 59.906 45.833 0.00 0.00 0.00 3.51
3364 3504 9.410556 GATAAACATCACAACAACTTTATTGCT 57.589 29.630 0.00 0.00 0.00 3.91
3381 3521 8.184848 GCTAAAGGTTCTCAAAGGATAAACATC 58.815 37.037 0.00 0.00 0.00 3.06
3388 3528 5.248380 AGTGCTAAAGGTTCTCAAAGGAT 57.752 39.130 0.00 0.00 0.00 3.24
3524 3664 4.652421 TTGCTTTGCTTGTTGATTGAGA 57.348 36.364 0.00 0.00 0.00 3.27
3605 3745 0.992802 GGAAGTAGCTTCTTCGTGCG 59.007 55.000 22.20 0.00 43.10 5.34
3853 3993 3.072184 AGAAGTCATCAAGAGCAGGTGTT 59.928 43.478 0.00 0.00 0.00 3.32
3910 4050 0.968405 TTTTTGTCTGCTGGGATGGC 59.032 50.000 0.00 0.00 0.00 4.40
3990 4130 3.057033 AGTGCTTTCATGCTGGAAATGTC 60.057 43.478 4.26 0.00 36.29 3.06
4019 4159 4.157656 CAGATTCTCTTCGAGTCCAACTCT 59.842 45.833 5.63 0.00 42.92 3.24
4026 4166 2.678836 TCCGTCAGATTCTCTTCGAGTC 59.321 50.000 0.00 0.00 0.00 3.36
4380 4520 1.217779 GCCAGAGCCAGACTGACTC 59.782 63.158 10.57 10.57 37.54 3.36
4442 4582 9.237846 CAGAAAATTAACTGGAACTCTGAAAAC 57.762 33.333 4.51 0.00 32.58 2.43
4483 4623 1.912371 GAAGCACGCAGGGTAGCAAC 61.912 60.000 12.37 4.72 0.00 4.17
4534 4674 5.181748 GTTCAGGACATTAACAGCTCTCAT 58.818 41.667 0.00 0.00 0.00 2.90
4599 4739 4.788840 GCAAGTGATGAATGCATAGCACTC 60.789 45.833 18.09 4.78 43.04 3.51
4665 4805 0.391263 GGCCAGTTAACTCCTGTCCG 60.391 60.000 4.77 0.00 0.00 4.79
4852 4993 6.596621 AGAAGTTCATTTCCTAGGGCTATTC 58.403 40.000 9.46 3.58 0.00 1.75
4929 5070 6.982852 TGATTTATCTTCTCCTAGCTTACCG 58.017 40.000 0.00 0.00 0.00 4.02
5022 5626 5.877012 GCACTGATTCTATCACTTCCAGAAA 59.123 40.000 0.00 0.00 35.06 2.52
5037 5641 7.093992 ACACTACTCTAAGAAAGCACTGATTC 58.906 38.462 0.00 0.00 0.00 2.52
5097 5701 1.196808 CGTACCAACAATGCAGTGGAC 59.803 52.381 19.57 7.15 0.00 4.02
5099 5703 0.521291 CCGTACCAACAATGCAGTGG 59.479 55.000 19.57 12.48 0.00 4.00
5117 5721 3.643792 AGGGAACATGTAGTCAGATAGCC 59.356 47.826 0.00 0.00 0.00 3.93
5149 5753 0.539438 AGTTGCGAAATCCCTTGCCA 60.539 50.000 0.00 0.00 0.00 4.92
5260 5867 2.101233 GGCTCCCGAACTTCGCTTC 61.101 63.158 5.61 0.00 38.82 3.86
5269 5876 0.893727 GCTTCCTTTTGGCTCCCGAA 60.894 55.000 0.00 0.00 40.12 4.30
5272 5879 0.681243 ATCGCTTCCTTTTGGCTCCC 60.681 55.000 0.00 0.00 40.12 4.30
5296 5903 1.672356 CCACCAGCCGACCTCTTTG 60.672 63.158 0.00 0.00 0.00 2.77
5386 5997 8.120465 CGACCGTAGCATAATCTTTTGTATTTT 58.880 33.333 0.00 0.00 0.00 1.82
5388 5999 6.292703 GCGACCGTAGCATAATCTTTTGTATT 60.293 38.462 0.00 0.00 34.19 1.89
5479 6091 2.555325 ACACAGTTGAGTCGTCCGAATA 59.445 45.455 0.00 0.00 0.00 1.75
5482 6094 1.596603 TACACAGTTGAGTCGTCCGA 58.403 50.000 0.00 0.00 0.00 4.55
5485 6097 5.652744 ACAATTTACACAGTTGAGTCGTC 57.347 39.130 0.00 0.00 0.00 4.20
5488 6100 9.221775 CTTAACAACAATTTACACAGTTGAGTC 57.778 33.333 10.68 0.00 42.87 3.36
5504 6116 2.438763 TCCTTCCGTCCCTTAACAACAA 59.561 45.455 0.00 0.00 0.00 2.83
5520 6135 0.743345 AGCAAATACGCCCGTCCTTC 60.743 55.000 0.00 0.00 0.00 3.46
5533 6148 4.891756 CCATCACCTCCATAAAGAGCAAAT 59.108 41.667 0.00 0.00 32.17 2.32
5562 6177 4.574828 ACATGCATTAAGACCCGTAATGTC 59.425 41.667 0.00 7.05 39.90 3.06
5569 6184 3.919804 CACAAAACATGCATTAAGACCCG 59.080 43.478 0.00 0.00 0.00 5.28
5592 6207 6.856426 GCGGAGTATAAAGGAATGCAAATTAC 59.144 38.462 0.00 0.00 0.00 1.89
5600 6215 6.223852 ACATACTGCGGAGTATAAAGGAATG 58.776 40.000 26.50 17.56 42.55 2.67
5615 6230 9.244799 TCATATTAACTCAACTTACATACTGCG 57.755 33.333 0.00 0.00 0.00 5.18
5640 6256 2.065993 TCAGCTGCGTTGAACTACTC 57.934 50.000 9.47 0.00 0.00 2.59
5665 6281 9.293404 CTATCATACTTCCATCATTTTCCATGT 57.707 33.333 0.00 0.00 0.00 3.21
5742 6358 2.548057 TGGCAGATCAGTCAAACGTTTC 59.452 45.455 11.37 0.55 0.00 2.78
5934 6954 0.996462 TCGCAGTAGTACGCAAATGC 59.004 50.000 14.47 8.93 37.78 3.56
6197 7218 7.930325 CGATACTTCAATGGATATGATGGCTAT 59.070 37.037 0.00 0.00 0.00 2.97
6222 7243 5.052481 TCTCATAATGGAAGACTCAATGCG 58.948 41.667 0.00 0.00 0.00 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.