Multiple sequence alignment - TraesCS2B01G491400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G491400 chr2B 100.000 4034 0 0 1 4034 689763554 689767587 0.000000e+00 7450.0
1 TraesCS2B01G491400 chr2B 84.127 882 118 12 2176 3036 689143226 689142346 0.000000e+00 833.0
2 TraesCS2B01G491400 chr2B 83.126 883 126 14 2176 3036 688479288 688478407 0.000000e+00 784.0
3 TraesCS2B01G491400 chr2B 90.351 456 41 1 1169 1624 689144179 689143727 2.680000e-166 595.0
4 TraesCS2B01G491400 chr2B 89.693 456 44 1 1169 1624 688480458 688480006 2.700000e-161 579.0
5 TraesCS2B01G491400 chr2B 90.034 291 28 1 1812 2101 688479918 688479628 3.810000e-100 375.0
6 TraesCS2B01G491400 chr2B 89.619 289 29 1 1813 2101 689143653 689143366 2.290000e-97 366.0
7 TraesCS2B01G491400 chr2B 95.082 122 6 0 3901 4022 312379680 312379801 4.110000e-45 193.0
8 TraesCS2B01G491400 chr2B 89.032 155 16 1 125 278 40526514 40526668 1.480000e-44 191.0
9 TraesCS2B01G491400 chr2B 79.021 286 37 14 1 283 264591701 264591436 1.490000e-39 174.0
10 TraesCS2B01G491400 chr2B 80.392 102 4 13 97 195 439734767 439734679 3.370000e-06 63.9
11 TraesCS2B01G491400 chr2D 90.674 1780 71 27 336 2081 573902568 573904286 0.000000e+00 2279.0
12 TraesCS2B01G491400 chr2D 96.404 1001 29 2 2177 3177 573904284 573905277 0.000000e+00 1642.0
13 TraesCS2B01G491400 chr2D 85.104 866 102 17 2195 3036 572953207 572952345 0.000000e+00 859.0
14 TraesCS2B01G491400 chr2D 87.399 619 49 14 3443 4034 573905696 573906312 0.000000e+00 684.0
15 TraesCS2B01G491400 chr2D 89.693 456 44 1 1169 1624 572954157 572953705 2.700000e-161 579.0
16 TraesCS2B01G491400 chr2D 89.888 445 39 4 3443 3884 131272873 131273314 5.850000e-158 568.0
17 TraesCS2B01G491400 chr2D 91.197 284 25 0 1812 2095 572953616 572953333 1.760000e-103 387.0
18 TraesCS2B01G491400 chr2D 96.154 130 5 0 3314 3443 573905533 573905662 3.160000e-51 213.0
19 TraesCS2B01G491400 chr2D 94.565 92 2 2 3169 3259 573905451 573905540 5.440000e-29 139.0
20 TraesCS2B01G491400 chr2D 82.609 115 18 2 2854 2968 574103713 574103825 2.570000e-17 100.0
21 TraesCS2B01G491400 chr2A 89.013 1793 83 32 334 2081 712343940 712345663 0.000000e+00 2115.0
22 TraesCS2B01G491400 chr2A 96.133 931 36 0 2177 3107 712345661 712346591 0.000000e+00 1520.0
23 TraesCS2B01G491400 chr2A 83.900 882 119 12 2177 3036 712188235 712187355 0.000000e+00 821.0
24 TraesCS2B01G491400 chr2A 88.423 501 46 8 1133 1624 712189403 712188906 9.650000e-166 593.0
25 TraesCS2B01G491400 chr2A 84.615 624 61 16 3443 4034 12320313 12319693 4.490000e-164 588.0
26 TraesCS2B01G491400 chr2A 90.614 277 26 0 1812 2088 712188627 712188351 6.370000e-98 368.0
27 TraesCS2B01G491400 chr7A 86.817 622 52 15 3443 4034 700123092 700122471 0.000000e+00 667.0
28 TraesCS2B01G491400 chr7A 85.623 626 54 18 3443 4034 8798559 8799182 3.420000e-175 625.0
29 TraesCS2B01G491400 chr7A 84.934 604 56 15 3443 4017 105225390 105224793 2.700000e-161 579.0
30 TraesCS2B01G491400 chr7D 86.378 624 52 17 3443 4034 501439917 501440539 0.000000e+00 651.0
31 TraesCS2B01G491400 chr7D 85.321 109 11 4 17 124 115198316 115198212 1.530000e-19 108.0
32 TraesCS2B01G491400 chr5D 86.174 622 54 14 3443 4034 559100940 559101559 0.000000e+00 643.0
33 TraesCS2B01G491400 chr4A 85.096 624 59 17 3443 4034 395018765 395019386 1.240000e-169 606.0
34 TraesCS2B01G491400 chr4A 83.974 156 23 1 125 278 716485504 716485349 9.030000e-32 148.0
35 TraesCS2B01G491400 chr6D 85.024 621 60 15 3446 4034 461852991 461852372 5.770000e-168 601.0
36 TraesCS2B01G491400 chr6D 95.000 40 1 1 727 766 328977370 328977408 1.210000e-05 62.1
37 TraesCS2B01G491400 chr6B 83.773 493 54 16 3568 4034 35378776 35379268 1.030000e-120 444.0
38 TraesCS2B01G491400 chr6B 85.437 103 8 4 19 121 82211882 82211787 2.570000e-17 100.0
39 TraesCS2B01G491400 chr6B 82.258 124 12 10 14 129 78256868 78256989 9.230000e-17 99.0
40 TraesCS2B01G491400 chr6A 94.872 117 6 0 3901 4017 74808243 74808359 2.480000e-42 183.0
41 TraesCS2B01G491400 chr6A 79.394 165 31 2 125 287 21653941 21653778 3.300000e-21 113.0
42 TraesCS2B01G491400 chr1D 94.783 115 5 1 3904 4017 270618543 270618657 1.150000e-40 178.0
43 TraesCS2B01G491400 chr1D 97.143 35 0 1 732 766 91319599 91319566 1.570000e-04 58.4
44 TraesCS2B01G491400 chr1D 97.059 34 0 1 732 765 91240132 91240100 5.630000e-04 56.5
45 TraesCS2B01G491400 chr1D 97.059 34 0 1 732 765 91356806 91356774 5.630000e-04 56.5
46 TraesCS2B01G491400 chr5A 79.087 263 38 10 19 276 103752841 103752591 8.970000e-37 165.0
47 TraesCS2B01G491400 chr5A 81.053 95 3 11 97 188 665311558 665311476 1.210000e-05 62.1
48 TraesCS2B01G491400 chr1B 85.156 128 11 7 1 125 593764841 593764963 1.520000e-24 124.0
49 TraesCS2B01G491400 chr1B 84.167 120 10 6 10 129 62784357 62784247 1.530000e-19 108.0
50 TraesCS2B01G491400 chr3B 80.795 151 23 4 109 258 483001188 483001043 3.300000e-21 113.0
51 TraesCS2B01G491400 chr3B 75.556 270 45 12 2279 2530 566190239 566189973 3.300000e-21 113.0
52 TraesCS2B01G491400 chr3B 100.000 32 0 0 734 765 629551169 629551138 4.350000e-05 60.2
53 TraesCS2B01G491400 chr5B 85.088 114 8 5 16 129 294760782 294760886 1.530000e-19 108.0
54 TraesCS2B01G491400 chr3A 84.685 111 8 5 20 129 212530358 212530460 7.130000e-18 102.0
55 TraesCS2B01G491400 chr3A 83.478 115 8 7 15 129 212528915 212529018 3.320000e-16 97.1
56 TraesCS2B01G491400 chr1A 100.000 33 0 0 734 766 547586539 547586571 1.210000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G491400 chr2B 689763554 689767587 4033 False 7450.000000 7450 100.000000 1 4034 1 chr2B.!!$F3 4033
1 TraesCS2B01G491400 chr2B 689142346 689144179 1833 True 598.000000 833 88.032333 1169 3036 3 chr2B.!!$R4 1867
2 TraesCS2B01G491400 chr2B 688478407 688480458 2051 True 579.333333 784 87.617667 1169 3036 3 chr2B.!!$R3 1867
3 TraesCS2B01G491400 chr2D 573902568 573906312 3744 False 991.400000 2279 93.039200 336 4034 5 chr2D.!!$F3 3698
4 TraesCS2B01G491400 chr2D 572952345 572954157 1812 True 608.333333 859 88.664667 1169 3036 3 chr2D.!!$R1 1867
5 TraesCS2B01G491400 chr2A 712343940 712346591 2651 False 1817.500000 2115 92.573000 334 3107 2 chr2A.!!$F1 2773
6 TraesCS2B01G491400 chr2A 712187355 712189403 2048 True 594.000000 821 87.645667 1133 3036 3 chr2A.!!$R2 1903
7 TraesCS2B01G491400 chr2A 12319693 12320313 620 True 588.000000 588 84.615000 3443 4034 1 chr2A.!!$R1 591
8 TraesCS2B01G491400 chr7A 700122471 700123092 621 True 667.000000 667 86.817000 3443 4034 1 chr7A.!!$R2 591
9 TraesCS2B01G491400 chr7A 8798559 8799182 623 False 625.000000 625 85.623000 3443 4034 1 chr7A.!!$F1 591
10 TraesCS2B01G491400 chr7A 105224793 105225390 597 True 579.000000 579 84.934000 3443 4017 1 chr7A.!!$R1 574
11 TraesCS2B01G491400 chr7D 501439917 501440539 622 False 651.000000 651 86.378000 3443 4034 1 chr7D.!!$F1 591
12 TraesCS2B01G491400 chr5D 559100940 559101559 619 False 643.000000 643 86.174000 3443 4034 1 chr5D.!!$F1 591
13 TraesCS2B01G491400 chr4A 395018765 395019386 621 False 606.000000 606 85.096000 3443 4034 1 chr4A.!!$F1 591
14 TraesCS2B01G491400 chr6D 461852372 461852991 619 True 601.000000 601 85.024000 3446 4034 1 chr6D.!!$R1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.044092 TAGAAGATGGGCCCCAGACA 59.956 55.0 22.27 0.00 36.75 3.41 F
1790 1922 0.038892 TCAACTTGTCGGTAGCGGTC 60.039 55.0 15.23 8.79 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2174 2538 0.037326 GGCACTCGACACCATCTGAA 60.037 55.000 0.00 0.00 0.00 3.02 R
3432 4049 1.080705 GTGAAGGTGTAGCGTCGCT 60.081 57.895 25.08 25.08 43.41 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.918201 GGCGGCGGATGGAGGAAG 62.918 72.222 9.78 0.00 0.00 3.46
41 42 4.918201 GGCGGATGGAGGAAGCGG 62.918 72.222 0.00 0.00 0.00 5.52
44 45 4.918201 GGATGGAGGAAGCGGCGG 62.918 72.222 9.78 0.00 0.00 6.13
90 91 3.154473 CGGGCTGCAGCTAGGGTA 61.154 66.667 35.82 0.00 41.70 3.69
91 92 2.825264 GGGCTGCAGCTAGGGTAG 59.175 66.667 35.82 0.00 41.70 3.18
92 93 2.812619 GGGCTGCAGCTAGGGTAGG 61.813 68.421 35.82 0.00 41.70 3.18
93 94 2.812619 GGCTGCAGCTAGGGTAGGG 61.813 68.421 35.82 0.00 41.70 3.53
94 95 2.066999 GCTGCAGCTAGGGTAGGGT 61.067 63.158 31.33 0.00 38.21 4.34
95 96 1.627297 GCTGCAGCTAGGGTAGGGTT 61.627 60.000 31.33 0.00 38.21 4.11
96 97 1.789523 CTGCAGCTAGGGTAGGGTTA 58.210 55.000 0.00 0.00 0.00 2.85
97 98 1.689273 CTGCAGCTAGGGTAGGGTTAG 59.311 57.143 0.00 0.00 0.00 2.34
98 99 1.049402 GCAGCTAGGGTAGGGTTAGG 58.951 60.000 0.00 0.00 0.00 2.69
99 100 1.412649 GCAGCTAGGGTAGGGTTAGGA 60.413 57.143 0.00 0.00 0.00 2.94
100 101 2.760372 GCAGCTAGGGTAGGGTTAGGAT 60.760 54.545 0.00 0.00 0.00 3.24
101 102 3.166679 CAGCTAGGGTAGGGTTAGGATC 58.833 54.545 0.00 0.00 0.00 3.36
102 103 2.169330 GCTAGGGTAGGGTTAGGATCG 58.831 57.143 0.00 0.00 0.00 3.69
103 104 2.224967 GCTAGGGTAGGGTTAGGATCGA 60.225 54.545 0.00 0.00 0.00 3.59
104 105 2.378378 AGGGTAGGGTTAGGATCGAC 57.622 55.000 0.00 0.00 0.00 4.20
105 106 1.858246 AGGGTAGGGTTAGGATCGACT 59.142 52.381 0.00 0.00 0.00 4.18
106 107 2.246849 AGGGTAGGGTTAGGATCGACTT 59.753 50.000 0.00 0.00 0.00 3.01
107 108 2.364647 GGGTAGGGTTAGGATCGACTTG 59.635 54.545 0.00 0.00 0.00 3.16
108 109 2.223994 GGTAGGGTTAGGATCGACTTGC 60.224 54.545 0.00 0.00 0.00 4.01
109 110 0.460311 AGGGTTAGGATCGACTTGCG 59.540 55.000 0.00 0.00 42.69 4.85
121 122 4.160736 TCGACTTGCGATAGATACCATG 57.839 45.455 0.00 0.00 45.59 3.66
122 123 3.568430 TCGACTTGCGATAGATACCATGT 59.432 43.478 0.00 0.00 45.59 3.21
123 124 4.758165 TCGACTTGCGATAGATACCATGTA 59.242 41.667 0.00 0.00 45.59 2.29
124 125 5.089411 CGACTTGCGATAGATACCATGTAG 58.911 45.833 0.00 0.00 44.57 2.74
125 126 5.334957 CGACTTGCGATAGATACCATGTAGT 60.335 44.000 0.00 0.00 44.57 2.73
126 127 6.128363 CGACTTGCGATAGATACCATGTAGTA 60.128 42.308 0.00 0.00 44.57 1.82
127 128 7.147143 ACTTGCGATAGATACCATGTAGTAG 57.853 40.000 0.00 0.00 39.76 2.57
128 129 6.940867 ACTTGCGATAGATACCATGTAGTAGA 59.059 38.462 0.00 0.00 39.76 2.59
129 130 7.447545 ACTTGCGATAGATACCATGTAGTAGAA 59.552 37.037 0.00 0.00 39.76 2.10
130 131 7.379098 TGCGATAGATACCATGTAGTAGAAG 57.621 40.000 0.00 0.00 39.76 2.85
131 132 7.166167 TGCGATAGATACCATGTAGTAGAAGA 58.834 38.462 0.00 0.00 39.76 2.87
132 133 7.119407 TGCGATAGATACCATGTAGTAGAAGAC 59.881 40.741 0.00 0.00 39.76 3.01
133 134 7.334921 GCGATAGATACCATGTAGTAGAAGACT 59.665 40.741 0.00 0.00 39.80 3.24
134 135 9.872721 CGATAGATACCATGTAGTAGAAGACTA 57.127 37.037 0.00 0.00 37.80 2.59
137 138 8.048016 AGATACCATGTAGTAGAAGACTAGGT 57.952 38.462 0.00 0.00 41.47 3.08
138 139 8.504409 AGATACCATGTAGTAGAAGACTAGGTT 58.496 37.037 0.00 0.00 41.47 3.50
139 140 9.134055 GATACCATGTAGTAGAAGACTAGGTTT 57.866 37.037 0.00 0.00 41.47 3.27
141 142 8.522542 ACCATGTAGTAGAAGACTAGGTTTAG 57.477 38.462 0.00 0.00 41.47 1.85
142 143 8.334734 ACCATGTAGTAGAAGACTAGGTTTAGA 58.665 37.037 0.00 0.00 41.47 2.10
143 144 8.623030 CCATGTAGTAGAAGACTAGGTTTAGAC 58.377 40.741 0.00 0.00 41.47 2.59
144 145 8.623030 CATGTAGTAGAAGACTAGGTTTAGACC 58.377 40.741 0.00 0.00 41.47 3.85
145 146 6.820656 TGTAGTAGAAGACTAGGTTTAGACCG 59.179 42.308 0.00 0.00 44.28 4.79
146 147 6.821160 GTAGTAGAAGACTAGGTTTAGACCGT 59.179 42.308 0.00 0.00 44.28 4.83
147 148 6.820656 TAGTAGAAGACTAGGTTTAGACCGTG 59.179 42.308 0.00 0.00 44.28 4.94
148 149 8.540076 TAGTAGAAGACTAGGTTTAGACCGTGC 61.540 44.444 0.00 0.00 44.28 5.34
154 155 1.301423 GGTTTAGACCGTGCAACACA 58.699 50.000 0.00 0.00 35.91 3.72
155 156 1.671845 GGTTTAGACCGTGCAACACAA 59.328 47.619 0.00 0.00 35.91 3.33
156 157 2.292292 GGTTTAGACCGTGCAACACAAT 59.708 45.455 0.00 0.00 35.91 2.71
157 158 3.243267 GGTTTAGACCGTGCAACACAATT 60.243 43.478 0.00 0.00 35.91 2.32
158 159 4.023878 GGTTTAGACCGTGCAACACAATTA 60.024 41.667 0.00 0.00 35.91 1.40
159 160 4.735662 TTAGACCGTGCAACACAATTAC 57.264 40.909 0.00 0.00 35.74 1.89
160 161 2.566913 AGACCGTGCAACACAATTACA 58.433 42.857 0.00 0.00 35.74 2.41
161 162 3.146066 AGACCGTGCAACACAATTACAT 58.854 40.909 0.00 0.00 35.74 2.29
162 163 3.568007 AGACCGTGCAACACAATTACATT 59.432 39.130 0.00 0.00 35.74 2.71
163 164 3.637432 ACCGTGCAACACAATTACATTG 58.363 40.909 0.00 0.00 45.59 2.82
164 165 3.316588 ACCGTGCAACACAATTACATTGA 59.683 39.130 3.47 0.00 43.16 2.57
165 166 4.022416 ACCGTGCAACACAATTACATTGAT 60.022 37.500 3.47 0.00 43.16 2.57
166 167 4.558470 CCGTGCAACACAATTACATTGATC 59.442 41.667 3.47 0.00 43.16 2.92
167 168 4.260425 CGTGCAACACAATTACATTGATCG 59.740 41.667 3.47 0.00 43.16 3.69
168 169 4.558470 GTGCAACACAATTACATTGATCGG 59.442 41.667 3.47 0.00 43.16 4.18
169 170 4.217334 TGCAACACAATTACATTGATCGGT 59.783 37.500 3.47 0.00 42.83 4.69
170 171 4.558470 GCAACACAATTACATTGATCGGTG 59.442 41.667 3.47 0.00 42.83 4.94
171 172 4.355543 ACACAATTACATTGATCGGTGC 57.644 40.909 3.47 0.00 42.83 5.01
172 173 3.755905 ACACAATTACATTGATCGGTGCA 59.244 39.130 3.47 0.00 42.83 4.57
173 174 4.398988 ACACAATTACATTGATCGGTGCAT 59.601 37.500 3.47 0.00 42.83 3.96
174 175 5.105797 ACACAATTACATTGATCGGTGCATT 60.106 36.000 3.47 0.00 42.83 3.56
175 176 5.230516 CACAATTACATTGATCGGTGCATTG 59.769 40.000 14.64 14.64 42.83 2.82
176 177 4.572985 ATTACATTGATCGGTGCATTGG 57.427 40.909 0.00 0.00 0.00 3.16
177 178 2.127271 ACATTGATCGGTGCATTGGA 57.873 45.000 0.00 0.00 0.00 3.53
178 179 1.745087 ACATTGATCGGTGCATTGGAC 59.255 47.619 0.00 0.00 0.00 4.02
179 180 1.744522 CATTGATCGGTGCATTGGACA 59.255 47.619 10.61 0.00 0.00 4.02
180 181 2.127271 TTGATCGGTGCATTGGACAT 57.873 45.000 10.61 0.00 0.00 3.06
181 182 1.381522 TGATCGGTGCATTGGACATG 58.618 50.000 10.61 2.33 0.00 3.21
182 183 1.339920 TGATCGGTGCATTGGACATGT 60.340 47.619 10.61 0.00 0.00 3.21
183 184 2.093235 TGATCGGTGCATTGGACATGTA 60.093 45.455 10.61 0.00 0.00 2.29
184 185 2.708216 TCGGTGCATTGGACATGTAT 57.292 45.000 10.61 0.00 0.00 2.29
185 186 3.828875 TCGGTGCATTGGACATGTATA 57.171 42.857 10.61 0.00 0.00 1.47
186 187 4.350368 TCGGTGCATTGGACATGTATAT 57.650 40.909 10.61 0.00 0.00 0.86
187 188 5.476091 TCGGTGCATTGGACATGTATATA 57.524 39.130 10.61 0.00 0.00 0.86
188 189 6.048732 TCGGTGCATTGGACATGTATATAT 57.951 37.500 10.61 0.00 0.00 0.86
189 190 5.874261 TCGGTGCATTGGACATGTATATATG 59.126 40.000 10.61 7.84 0.00 1.78
190 191 5.874261 CGGTGCATTGGACATGTATATATGA 59.126 40.000 15.59 0.00 0.00 2.15
191 192 6.539826 CGGTGCATTGGACATGTATATATGAT 59.460 38.462 15.59 1.12 0.00 2.45
192 193 7.710475 CGGTGCATTGGACATGTATATATGATA 59.290 37.037 15.59 0.00 0.00 2.15
193 194 9.565090 GGTGCATTGGACATGTATATATGATAT 57.435 33.333 15.59 0.00 0.00 1.63
209 210 5.830799 ATGATATACAGAATGGAGCCACA 57.169 39.130 0.00 0.00 43.62 4.17
210 211 5.628797 TGATATACAGAATGGAGCCACAA 57.371 39.130 0.00 0.00 43.62 3.33
211 212 6.191657 TGATATACAGAATGGAGCCACAAT 57.808 37.500 0.00 0.00 43.62 2.71
212 213 6.233434 TGATATACAGAATGGAGCCACAATC 58.767 40.000 0.00 0.00 43.62 2.67
213 214 4.785346 ATACAGAATGGAGCCACAATCT 57.215 40.909 0.00 0.00 43.62 2.40
214 215 3.446442 ACAGAATGGAGCCACAATCTT 57.554 42.857 0.00 0.00 43.62 2.40
215 216 4.574674 ACAGAATGGAGCCACAATCTTA 57.425 40.909 0.00 0.00 43.62 2.10
216 217 4.922206 ACAGAATGGAGCCACAATCTTAA 58.078 39.130 0.00 0.00 43.62 1.85
217 218 4.702131 ACAGAATGGAGCCACAATCTTAAC 59.298 41.667 0.00 0.00 43.62 2.01
218 219 4.946157 CAGAATGGAGCCACAATCTTAACT 59.054 41.667 0.00 0.00 0.00 2.24
219 220 6.115446 CAGAATGGAGCCACAATCTTAACTA 58.885 40.000 0.00 0.00 0.00 2.24
220 221 6.769822 CAGAATGGAGCCACAATCTTAACTAT 59.230 38.462 0.00 0.00 0.00 2.12
221 222 7.933577 CAGAATGGAGCCACAATCTTAACTATA 59.066 37.037 0.00 0.00 0.00 1.31
222 223 7.934120 AGAATGGAGCCACAATCTTAACTATAC 59.066 37.037 0.00 0.00 0.00 1.47
223 224 6.553953 TGGAGCCACAATCTTAACTATACA 57.446 37.500 0.00 0.00 0.00 2.29
224 225 6.953101 TGGAGCCACAATCTTAACTATACAA 58.047 36.000 0.00 0.00 0.00 2.41
225 226 7.047891 TGGAGCCACAATCTTAACTATACAAG 58.952 38.462 0.00 0.00 0.00 3.16
226 227 7.093068 TGGAGCCACAATCTTAACTATACAAGA 60.093 37.037 0.00 0.00 35.37 3.02
227 228 7.769044 GGAGCCACAATCTTAACTATACAAGAA 59.231 37.037 0.00 0.00 34.61 2.52
228 229 9.162764 GAGCCACAATCTTAACTATACAAGAAA 57.837 33.333 0.00 0.00 34.61 2.52
229 230 9.515226 AGCCACAATCTTAACTATACAAGAAAA 57.485 29.630 0.00 0.00 34.61 2.29
230 231 9.556030 GCCACAATCTTAACTATACAAGAAAAC 57.444 33.333 0.00 0.00 34.61 2.43
241 242 9.892130 AACTATACAAGAAAACTAGAAGATGGG 57.108 33.333 0.00 0.00 0.00 4.00
242 243 7.988028 ACTATACAAGAAAACTAGAAGATGGGC 59.012 37.037 0.00 0.00 0.00 5.36
243 244 4.336280 ACAAGAAAACTAGAAGATGGGCC 58.664 43.478 0.00 0.00 0.00 5.80
244 245 3.653835 AGAAAACTAGAAGATGGGCCC 57.346 47.619 17.59 17.59 0.00 5.80
245 246 2.242452 AGAAAACTAGAAGATGGGCCCC 59.758 50.000 22.27 4.15 0.00 5.80
246 247 1.681229 AAACTAGAAGATGGGCCCCA 58.319 50.000 22.27 4.05 38.19 4.96
247 248 1.216990 AACTAGAAGATGGGCCCCAG 58.783 55.000 22.27 7.26 36.75 4.45
248 249 0.343372 ACTAGAAGATGGGCCCCAGA 59.657 55.000 22.27 0.00 36.75 3.86
249 250 0.761802 CTAGAAGATGGGCCCCAGAC 59.238 60.000 22.27 5.00 36.75 3.51
250 251 0.044092 TAGAAGATGGGCCCCAGACA 59.956 55.000 22.27 0.00 36.75 3.41
251 252 1.077429 GAAGATGGGCCCCAGACAC 60.077 63.158 22.27 2.47 36.75 3.67
252 253 1.852157 AAGATGGGCCCCAGACACA 60.852 57.895 22.27 0.00 36.75 3.72
253 254 1.434513 AAGATGGGCCCCAGACACAA 61.435 55.000 22.27 0.00 36.75 3.33
254 255 1.217057 AGATGGGCCCCAGACACAAT 61.217 55.000 22.27 2.19 36.75 2.71
255 256 0.550914 GATGGGCCCCAGACACAATA 59.449 55.000 22.27 0.00 36.75 1.90
256 257 1.145738 GATGGGCCCCAGACACAATAT 59.854 52.381 22.27 0.35 36.75 1.28
257 258 1.900254 TGGGCCCCAGACACAATATA 58.100 50.000 22.27 0.00 0.00 0.86
258 259 1.493022 TGGGCCCCAGACACAATATAC 59.507 52.381 22.27 0.00 0.00 1.47
259 260 1.493022 GGGCCCCAGACACAATATACA 59.507 52.381 12.23 0.00 0.00 2.29
260 261 2.108250 GGGCCCCAGACACAATATACAT 59.892 50.000 12.23 0.00 0.00 2.29
261 262 3.149196 GGCCCCAGACACAATATACATG 58.851 50.000 0.00 0.00 0.00 3.21
262 263 2.554032 GCCCCAGACACAATATACATGC 59.446 50.000 0.00 0.00 0.00 4.06
263 264 3.819368 CCCCAGACACAATATACATGCA 58.181 45.455 0.00 0.00 0.00 3.96
264 265 3.817084 CCCCAGACACAATATACATGCAG 59.183 47.826 0.00 0.00 0.00 4.41
265 266 4.444733 CCCCAGACACAATATACATGCAGA 60.445 45.833 0.00 0.00 0.00 4.26
266 267 4.753610 CCCAGACACAATATACATGCAGAG 59.246 45.833 0.00 0.00 0.00 3.35
267 268 5.363101 CCAGACACAATATACATGCAGAGT 58.637 41.667 0.00 0.00 0.00 3.24
268 269 6.462909 CCCAGACACAATATACATGCAGAGTA 60.463 42.308 4.49 4.49 0.00 2.59
269 270 7.157347 CCAGACACAATATACATGCAGAGTAT 58.843 38.462 16.09 16.09 36.27 2.12
270 271 8.306761 CCAGACACAATATACATGCAGAGTATA 58.693 37.037 18.58 18.58 38.41 1.47
271 272 9.866798 CAGACACAATATACATGCAGAGTATAT 57.133 33.333 20.56 20.56 43.44 0.86
279 280 5.998454 ACATGCAGAGTATATTCAACAGC 57.002 39.130 0.00 0.00 0.00 4.40
280 281 5.678583 ACATGCAGAGTATATTCAACAGCT 58.321 37.500 0.00 0.00 0.00 4.24
281 282 5.757320 ACATGCAGAGTATATTCAACAGCTC 59.243 40.000 0.00 0.00 0.00 4.09
282 283 4.697514 TGCAGAGTATATTCAACAGCTCC 58.302 43.478 0.00 0.00 0.00 4.70
283 284 4.406972 TGCAGAGTATATTCAACAGCTCCT 59.593 41.667 0.00 0.00 0.00 3.69
284 285 5.598417 TGCAGAGTATATTCAACAGCTCCTA 59.402 40.000 0.00 0.00 0.00 2.94
285 286 5.923684 GCAGAGTATATTCAACAGCTCCTAC 59.076 44.000 0.00 0.00 0.00 3.18
286 287 6.451393 CAGAGTATATTCAACAGCTCCTACC 58.549 44.000 0.00 0.00 0.00 3.18
287 288 6.040955 CAGAGTATATTCAACAGCTCCTACCA 59.959 42.308 0.00 0.00 0.00 3.25
288 289 6.041069 AGAGTATATTCAACAGCTCCTACCAC 59.959 42.308 0.00 0.00 0.00 4.16
289 290 2.386661 ATTCAACAGCTCCTACCACG 57.613 50.000 0.00 0.00 0.00 4.94
290 291 0.320421 TTCAACAGCTCCTACCACGC 60.320 55.000 0.00 0.00 0.00 5.34
291 292 2.094659 CAACAGCTCCTACCACGCG 61.095 63.158 3.53 3.53 0.00 6.01
292 293 2.571216 AACAGCTCCTACCACGCGT 61.571 57.895 5.58 5.58 0.00 6.01
293 294 2.507102 CAGCTCCTACCACGCGTG 60.507 66.667 31.77 31.77 0.00 5.34
313 314 2.502510 CAACGAGCGTTGCCATGC 60.503 61.111 20.74 0.00 46.92 4.06
314 315 2.977456 AACGAGCGTTGCCATGCA 60.977 55.556 7.54 0.00 37.39 3.96
315 316 2.334946 AACGAGCGTTGCCATGCAT 61.335 52.632 7.54 0.00 38.76 3.96
316 317 2.023741 CGAGCGTTGCCATGCATC 59.976 61.111 4.63 0.00 38.76 3.91
320 321 4.892379 CGTTGCCATGCATCGCCG 62.892 66.667 13.98 7.17 43.00 6.46
321 322 3.814268 GTTGCCATGCATCGCCGT 61.814 61.111 13.98 0.00 38.76 5.68
322 323 3.813143 TTGCCATGCATCGCCGTG 61.813 61.111 13.98 0.00 38.76 4.94
326 327 3.511595 CATGCATCGCCGTGCCTT 61.512 61.111 0.00 0.00 44.43 4.35
327 328 2.751436 ATGCATCGCCGTGCCTTT 60.751 55.556 8.71 0.00 44.43 3.11
328 329 3.055080 ATGCATCGCCGTGCCTTTG 62.055 57.895 8.71 0.00 44.43 2.77
330 331 3.434319 CATCGCCGTGCCTTTGCT 61.434 61.111 0.00 0.00 38.71 3.91
331 332 2.672996 ATCGCCGTGCCTTTGCTT 60.673 55.556 0.00 0.00 38.71 3.91
332 333 2.981560 ATCGCCGTGCCTTTGCTTG 61.982 57.895 0.00 0.00 38.71 4.01
394 396 1.679977 GCCTTTGCCATGCTCCTGA 60.680 57.895 0.00 0.00 0.00 3.86
395 397 1.664321 GCCTTTGCCATGCTCCTGAG 61.664 60.000 0.00 0.00 0.00 3.35
396 398 0.323178 CCTTTGCCATGCTCCTGAGT 60.323 55.000 0.00 0.00 0.00 3.41
399 401 1.203441 TTGCCATGCTCCTGAGTCCT 61.203 55.000 0.00 0.00 0.00 3.85
400 402 1.153208 GCCATGCTCCTGAGTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
401 403 1.620739 GCCATGCTCCTGAGTCCTGA 61.621 60.000 0.00 0.00 0.00 3.86
409 411 1.687493 CTGAGTCCTGACCCCCTCC 60.687 68.421 0.00 0.00 0.00 4.30
411 413 4.026357 AGTCCTGACCCCCTCCCC 62.026 72.222 0.00 0.00 0.00 4.81
414 416 4.825679 CCTGACCCCCTCCCCCTC 62.826 77.778 0.00 0.00 0.00 4.30
415 417 3.700350 CTGACCCCCTCCCCCTCT 61.700 72.222 0.00 0.00 0.00 3.69
416 418 3.216371 TGACCCCCTCCCCCTCTT 61.216 66.667 0.00 0.00 0.00 2.85
431 433 0.393077 CTCTTCCACCTTGTGTCGGT 59.607 55.000 0.00 0.00 34.38 4.69
456 458 1.454479 AGCCAGCTGTGTTGTTGCT 60.454 52.632 13.81 9.27 37.56 3.91
457 459 0.179020 AGCCAGCTGTGTTGTTGCTA 60.179 50.000 13.81 0.00 35.05 3.49
465 467 3.799755 GTTGTTGCTAGCGCCGGG 61.800 66.667 10.77 0.00 34.43 5.73
499 501 1.006102 CTTCGCCAAGGACGTCAGT 60.006 57.895 18.91 0.02 0.00 3.41
579 581 4.271776 GCGGTAGGTTCAAATACATGTACC 59.728 45.833 7.96 6.40 40.08 3.34
717 723 5.410439 GTGGTTTGTCACGTTTGATAGGTAT 59.590 40.000 0.00 0.00 33.11 2.73
727 733 6.312918 CACGTTTGATAGGTATGCACTTTACT 59.687 38.462 0.00 0.00 0.00 2.24
730 736 7.705325 CGTTTGATAGGTATGCACTTTACTACT 59.295 37.037 0.00 0.00 0.00 2.57
785 791 5.061179 ACAAAGATAAGCACTTTACCGTGT 58.939 37.500 0.00 0.00 36.09 4.49
786 792 6.225318 ACAAAGATAAGCACTTTACCGTGTA 58.775 36.000 0.00 0.00 36.09 2.90
812 818 6.148270 TCAACTTAAGTAACTTGCGAATCG 57.852 37.500 8.92 0.00 0.00 3.34
871 885 4.272504 CGAACAGTGACCAACAGTTGTAAT 59.727 41.667 12.42 0.00 38.50 1.89
891 905 0.385974 GCAGTTCAACCATCACACGC 60.386 55.000 0.00 0.00 0.00 5.34
892 906 0.943673 CAGTTCAACCATCACACGCA 59.056 50.000 0.00 0.00 0.00 5.24
893 907 0.944386 AGTTCAACCATCACACGCAC 59.056 50.000 0.00 0.00 0.00 5.34
894 908 0.944386 GTTCAACCATCACACGCACT 59.056 50.000 0.00 0.00 0.00 4.40
895 909 0.943673 TTCAACCATCACACGCACTG 59.056 50.000 0.00 0.00 0.00 3.66
896 910 0.105778 TCAACCATCACACGCACTGA 59.894 50.000 0.00 0.00 0.00 3.41
897 911 1.159285 CAACCATCACACGCACTGAT 58.841 50.000 0.00 0.00 0.00 2.90
898 912 1.129251 CAACCATCACACGCACTGATC 59.871 52.381 0.00 0.00 0.00 2.92
899 913 0.321346 ACCATCACACGCACTGATCA 59.679 50.000 0.00 0.00 0.00 2.92
900 914 0.723414 CCATCACACGCACTGATCAC 59.277 55.000 0.00 0.00 0.00 3.06
901 915 1.431496 CATCACACGCACTGATCACA 58.569 50.000 0.00 0.00 0.00 3.58
902 916 1.127397 CATCACACGCACTGATCACAC 59.873 52.381 0.00 0.00 0.00 3.82
903 917 0.939106 TCACACGCACTGATCACACG 60.939 55.000 0.00 0.00 0.00 4.49
1011 1025 1.002468 GTGCAACACATGTCACAGACC 60.002 52.381 9.80 0.00 36.61 3.85
1204 1227 4.357947 GTGACGTGCTCCTCGGCA 62.358 66.667 0.00 0.00 44.26 5.69
1458 1481 4.452733 GCCAAGTACGAGCGGGCT 62.453 66.667 0.00 0.00 41.39 5.19
1685 1725 3.005684 TGCATGTCCATTTTTGTCAGGTC 59.994 43.478 0.00 0.00 0.00 3.85
1700 1761 1.211190 GGTCGTCGGGTGTACAGTC 59.789 63.158 0.00 0.00 0.00 3.51
1703 1764 0.535780 TCGTCGGGTGTACAGTCAGT 60.536 55.000 0.00 0.00 0.00 3.41
1724 1785 2.347697 TGACTGCATGAGTACGTGTC 57.652 50.000 0.00 0.00 33.83 3.67
1774 1906 2.108157 AGCTCAACGTGCCGTCAA 59.892 55.556 0.00 0.00 39.99 3.18
1775 1907 2.244651 AGCTCAACGTGCCGTCAAC 61.245 57.895 0.00 0.00 39.99 3.18
1777 1909 1.772063 GCTCAACGTGCCGTCAACTT 61.772 55.000 0.00 0.00 39.99 2.66
1778 1910 0.042188 CTCAACGTGCCGTCAACTTG 60.042 55.000 0.00 0.00 39.99 3.16
1779 1911 0.741574 TCAACGTGCCGTCAACTTGT 60.742 50.000 0.00 0.00 39.99 3.16
1781 1913 1.758319 AACGTGCCGTCAACTTGTCG 61.758 55.000 0.00 1.91 39.99 4.35
1786 1918 2.442084 CCGTCAACTTGTCGGTAGC 58.558 57.895 16.53 0.00 42.56 3.58
1790 1922 0.038892 TCAACTTGTCGGTAGCGGTC 60.039 55.000 15.23 8.79 0.00 4.79
1797 1929 0.179169 GTCGGTAGCGGTCTGACTTC 60.179 60.000 15.23 0.03 37.96 3.01
1960 2096 1.226603 GTCGTCGCCGCTCTACAAT 60.227 57.895 0.00 0.00 0.00 2.71
2088 2224 1.968050 ATGTACCGCCAGGCCAGTAC 61.968 60.000 23.95 23.95 42.76 2.73
2089 2225 2.284039 TACCGCCAGGCCAGTACA 60.284 61.111 5.01 0.00 42.76 2.90
2095 2234 1.609580 CGCCAGGCCAGTACAACTAAA 60.610 52.381 5.01 0.00 0.00 1.85
2096 2235 2.510613 GCCAGGCCAGTACAACTAAAA 58.489 47.619 5.01 0.00 0.00 1.52
2101 2257 5.944007 CCAGGCCAGTACAACTAAAACTAAT 59.056 40.000 5.01 0.00 0.00 1.73
2103 2259 7.065443 CCAGGCCAGTACAACTAAAACTAATAC 59.935 40.741 5.01 0.00 0.00 1.89
2105 2261 7.605309 AGGCCAGTACAACTAAAACTAATACAC 59.395 37.037 5.01 0.00 0.00 2.90
2107 2263 8.776470 GCCAGTACAACTAAAACTAATACACAA 58.224 33.333 0.00 0.00 0.00 3.33
2119 2483 9.554724 AAAACTAATACACAATATTTGCAGACG 57.445 29.630 0.00 0.00 0.00 4.18
2138 2502 4.002906 ACGCAGTACCAAAATCTCTTGA 57.997 40.909 0.00 0.00 41.94 3.02
2139 2503 4.385825 ACGCAGTACCAAAATCTCTTGAA 58.614 39.130 0.00 0.00 41.94 2.69
2141 2505 4.452455 CGCAGTACCAAAATCTCTTGAAGT 59.548 41.667 0.00 0.00 0.00 3.01
2142 2506 5.049405 CGCAGTACCAAAATCTCTTGAAGTT 60.049 40.000 0.00 0.00 0.00 2.66
2144 2508 7.148407 CGCAGTACCAAAATCTCTTGAAGTTAT 60.148 37.037 0.00 0.00 0.00 1.89
2145 2509 8.178313 GCAGTACCAAAATCTCTTGAAGTTATC 58.822 37.037 0.00 0.00 0.00 1.75
2146 2510 9.219603 CAGTACCAAAATCTCTTGAAGTTATCA 57.780 33.333 0.00 0.00 35.85 2.15
2147 2511 9.220767 AGTACCAAAATCTCTTGAAGTTATCAC 57.779 33.333 0.00 0.00 37.92 3.06
2148 2512 7.133891 ACCAAAATCTCTTGAAGTTATCACG 57.866 36.000 0.00 0.00 37.92 4.35
2149 2513 6.710744 ACCAAAATCTCTTGAAGTTATCACGT 59.289 34.615 0.00 0.00 37.92 4.49
2151 2515 8.717821 CCAAAATCTCTTGAAGTTATCACGTTA 58.282 33.333 0.00 0.00 37.92 3.18
2166 2530 9.887189 GTTATCACGTTAATATATCAATCTGCG 57.113 33.333 0.00 0.00 0.00 5.18
2167 2531 9.634163 TTATCACGTTAATATATCAATCTGCGT 57.366 29.630 0.00 0.00 0.00 5.24
2169 2533 6.009474 CACGTTAATATATCAATCTGCGTGC 58.991 40.000 0.00 0.00 39.18 5.34
2170 2534 5.164090 ACGTTAATATATCAATCTGCGTGCG 60.164 40.000 0.00 0.00 0.00 5.34
2171 2535 5.164090 CGTTAATATATCAATCTGCGTGCGT 60.164 40.000 0.00 0.00 0.00 5.24
2173 2537 1.131771 ATATCAATCTGCGTGCGTCG 58.868 50.000 0.00 0.00 43.12 5.12
2174 2538 0.179148 TATCAATCTGCGTGCGTCGT 60.179 50.000 0.00 0.00 42.13 4.34
2223 2637 2.036098 CTGTTCATGGGGCAGCCA 59.964 61.111 15.19 0.00 0.00 4.75
2272 2686 3.787001 CGGGCTCCCTGGAGAACC 61.787 72.222 17.38 15.49 44.53 3.62
2281 2695 3.535629 CTGGAGAACCTGCCGCACA 62.536 63.158 0.00 0.00 37.04 4.57
2282 2696 2.281484 GGAGAACCTGCCGCACAA 60.281 61.111 0.00 0.00 0.00 3.33
2591 3005 3.373565 GCTGAAGGCCAAACCGGG 61.374 66.667 6.32 0.00 46.52 5.73
2976 3411 2.027024 GTCGTGTCACTCGTGCCA 59.973 61.111 0.65 0.00 0.00 4.92
3126 3561 7.306866 GCTTTACTGCATCTACTGTGCTTATAC 60.307 40.741 0.00 0.00 42.92 1.47
3127 3562 4.950050 ACTGCATCTACTGTGCTTATACC 58.050 43.478 0.00 0.00 42.92 2.73
3128 3563 4.405680 ACTGCATCTACTGTGCTTATACCA 59.594 41.667 0.00 0.00 42.92 3.25
3129 3564 5.104941 ACTGCATCTACTGTGCTTATACCAA 60.105 40.000 0.00 0.00 42.92 3.67
3130 3565 5.359756 TGCATCTACTGTGCTTATACCAAG 58.640 41.667 0.00 0.00 42.92 3.61
3131 3566 5.104941 TGCATCTACTGTGCTTATACCAAGT 60.105 40.000 0.00 0.00 42.92 3.16
3132 3567 5.235186 GCATCTACTGTGCTTATACCAAGTG 59.765 44.000 0.00 0.00 39.45 3.16
3133 3568 6.573434 CATCTACTGTGCTTATACCAAGTGA 58.427 40.000 0.00 0.00 0.00 3.41
3134 3569 6.599356 TCTACTGTGCTTATACCAAGTGAA 57.401 37.500 0.00 0.00 0.00 3.18
3177 3612 9.710979 CGTATGTCGTATCCAAATAAAAACAAT 57.289 29.630 0.00 0.00 34.52 2.71
3224 3841 7.222999 GTCCTATAACTCATCACTTTCTTTCCG 59.777 40.741 0.00 0.00 0.00 4.30
3225 3842 5.803020 ATAACTCATCACTTTCTTTCCGC 57.197 39.130 0.00 0.00 0.00 5.54
3226 3843 3.126001 ACTCATCACTTTCTTTCCGCA 57.874 42.857 0.00 0.00 0.00 5.69
3227 3844 3.476552 ACTCATCACTTTCTTTCCGCAA 58.523 40.909 0.00 0.00 0.00 4.85
3343 3960 6.072508 ACACGTATAGGTAAGTCGACTGAAAA 60.073 38.462 20.85 4.57 0.00 2.29
3432 4049 9.554395 TTCTTGTCAAGTCTGTATATTGTTTGA 57.446 29.630 12.30 0.00 0.00 2.69
3494 4146 0.818296 CGACCCGACTCTTTCCTCAT 59.182 55.000 0.00 0.00 0.00 2.90
3687 4347 7.437748 TCACCTTAATGTTTTTGTAACATGGG 58.562 34.615 4.10 8.99 40.43 4.00
3766 4427 0.179108 GCGTCCAGTGATGTAGGTCC 60.179 60.000 0.00 0.00 0.00 4.46
3809 4472 5.723135 GCATGTCGTCCGATTAAACTTGTAC 60.723 44.000 0.00 0.00 0.00 2.90
3812 4475 5.182950 TGTCGTCCGATTAAACTTGTACCTA 59.817 40.000 0.00 0.00 0.00 3.08
3824 4487 0.320073 TGTACCTAACGGCTGCACAC 60.320 55.000 0.50 0.00 0.00 3.82
3829 4492 3.448533 TAACGGCTGCACACGTGGT 62.449 57.895 21.57 2.75 43.31 4.16
3871 4535 7.485810 TCAGTCGGATGATTCTAATCGTTTTA 58.514 34.615 0.00 0.00 38.26 1.52
3897 4593 3.196463 TGCAACAATTTCTGCAACAAGG 58.804 40.909 8.43 0.00 45.25 3.61
3898 4594 2.545106 GCAACAATTTCTGCAACAAGGG 59.455 45.455 4.05 0.00 38.48 3.95
3899 4595 3.795877 CAACAATTTCTGCAACAAGGGT 58.204 40.909 0.00 0.00 0.00 4.34
3906 4602 5.407407 TTTCTGCAACAAGGGTACAAAAA 57.593 34.783 0.00 0.00 0.00 1.94
3926 4622 6.398234 AAAACCTTGTTGCAAAACCTTTTT 57.602 29.167 0.00 2.21 0.00 1.94
3957 4656 2.677524 TGCAGCAAGACCCATGCC 60.678 61.111 0.00 0.00 44.91 4.40
3970 4669 1.210931 CATGCCGCACAACCTCTTG 59.789 57.895 0.00 0.00 0.00 3.02
4027 4730 1.647545 ATTGCAACATCTCCGCCACG 61.648 55.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.918201 CTTCCTCCATCCGCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
24 25 4.918201 CCGCTTCCTCCATCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
27 28 4.918201 CCGCCGCTTCCTCCATCC 62.918 72.222 0.00 0.00 0.00 3.51
73 74 3.154473 TACCCTAGCTGCAGCCCG 61.154 66.667 34.39 24.23 43.38 6.13
74 75 2.812619 CCTACCCTAGCTGCAGCCC 61.813 68.421 34.39 9.35 43.38 5.19
75 76 2.812619 CCCTACCCTAGCTGCAGCC 61.813 68.421 34.39 17.05 43.38 4.85
76 77 1.627297 AACCCTACCCTAGCTGCAGC 61.627 60.000 31.53 31.53 42.49 5.25
77 78 1.689273 CTAACCCTACCCTAGCTGCAG 59.311 57.143 10.11 10.11 0.00 4.41
78 79 1.691482 CCTAACCCTACCCTAGCTGCA 60.691 57.143 1.02 0.00 0.00 4.41
79 80 1.049402 CCTAACCCTACCCTAGCTGC 58.951 60.000 0.00 0.00 0.00 5.25
80 81 2.769602 TCCTAACCCTACCCTAGCTG 57.230 55.000 0.00 0.00 0.00 4.24
81 82 2.225066 CGATCCTAACCCTACCCTAGCT 60.225 54.545 0.00 0.00 0.00 3.32
82 83 2.169330 CGATCCTAACCCTACCCTAGC 58.831 57.143 0.00 0.00 0.00 3.42
83 84 3.074242 AGTCGATCCTAACCCTACCCTAG 59.926 52.174 0.00 0.00 0.00 3.02
84 85 3.059097 AGTCGATCCTAACCCTACCCTA 58.941 50.000 0.00 0.00 0.00 3.53
85 86 1.858246 AGTCGATCCTAACCCTACCCT 59.142 52.381 0.00 0.00 0.00 4.34
86 87 2.364647 CAAGTCGATCCTAACCCTACCC 59.635 54.545 0.00 0.00 0.00 3.69
87 88 2.223994 GCAAGTCGATCCTAACCCTACC 60.224 54.545 0.00 0.00 0.00 3.18
88 89 2.543238 CGCAAGTCGATCCTAACCCTAC 60.543 54.545 0.00 0.00 41.67 3.18
89 90 1.679680 CGCAAGTCGATCCTAACCCTA 59.320 52.381 0.00 0.00 41.67 3.53
90 91 0.460311 CGCAAGTCGATCCTAACCCT 59.540 55.000 0.00 0.00 41.67 4.34
91 92 0.458669 TCGCAAGTCGATCCTAACCC 59.541 55.000 0.00 0.00 43.16 4.11
101 102 3.902150 ACATGGTATCTATCGCAAGTCG 58.098 45.455 0.00 0.00 40.15 4.18
102 103 6.015027 ACTACATGGTATCTATCGCAAGTC 57.985 41.667 0.00 0.00 39.48 3.01
103 104 6.940867 TCTACTACATGGTATCTATCGCAAGT 59.059 38.462 0.00 0.00 39.48 3.16
104 105 7.379098 TCTACTACATGGTATCTATCGCAAG 57.621 40.000 0.00 0.00 0.00 4.01
105 106 7.664318 TCTTCTACTACATGGTATCTATCGCAA 59.336 37.037 0.00 0.00 0.00 4.85
106 107 7.119407 GTCTTCTACTACATGGTATCTATCGCA 59.881 40.741 0.00 0.00 0.00 5.10
107 108 7.334921 AGTCTTCTACTACATGGTATCTATCGC 59.665 40.741 0.00 0.00 36.36 4.58
108 109 8.780846 AGTCTTCTACTACATGGTATCTATCG 57.219 38.462 0.00 0.00 36.36 2.92
111 112 9.168553 ACCTAGTCTTCTACTACATGGTATCTA 57.831 37.037 0.00 0.00 35.84 1.98
112 113 8.048016 ACCTAGTCTTCTACTACATGGTATCT 57.952 38.462 0.00 0.00 35.84 1.98
113 114 8.694581 AACCTAGTCTTCTACTACATGGTATC 57.305 38.462 0.00 0.00 36.31 2.24
115 116 9.624373 CTAAACCTAGTCTTCTACTACATGGTA 57.376 37.037 0.00 0.00 36.31 3.25
116 117 8.334734 TCTAAACCTAGTCTTCTACTACATGGT 58.665 37.037 0.00 0.00 38.01 3.55
117 118 8.623030 GTCTAAACCTAGTCTTCTACTACATGG 58.377 40.741 0.00 0.00 39.80 3.66
118 119 8.623030 GGTCTAAACCTAGTCTTCTACTACATG 58.377 40.741 0.00 0.00 42.80 3.21
119 120 7.498570 CGGTCTAAACCTAGTCTTCTACTACAT 59.501 40.741 0.00 0.00 44.04 2.29
120 121 6.820656 CGGTCTAAACCTAGTCTTCTACTACA 59.179 42.308 0.00 0.00 44.04 2.74
121 122 6.821160 ACGGTCTAAACCTAGTCTTCTACTAC 59.179 42.308 0.00 0.00 44.04 2.73
122 123 6.820656 CACGGTCTAAACCTAGTCTTCTACTA 59.179 42.308 0.00 0.00 44.04 1.82
123 124 5.647225 CACGGTCTAAACCTAGTCTTCTACT 59.353 44.000 0.00 0.00 44.04 2.57
124 125 5.675827 GCACGGTCTAAACCTAGTCTTCTAC 60.676 48.000 0.00 0.00 44.04 2.59
125 126 4.397417 GCACGGTCTAAACCTAGTCTTCTA 59.603 45.833 0.00 0.00 44.04 2.10
126 127 3.193056 GCACGGTCTAAACCTAGTCTTCT 59.807 47.826 0.00 0.00 44.04 2.85
127 128 3.057033 TGCACGGTCTAAACCTAGTCTTC 60.057 47.826 0.00 0.00 44.04 2.87
128 129 2.895404 TGCACGGTCTAAACCTAGTCTT 59.105 45.455 0.00 0.00 44.04 3.01
129 130 2.522185 TGCACGGTCTAAACCTAGTCT 58.478 47.619 0.00 0.00 44.04 3.24
130 131 2.991866 GTTGCACGGTCTAAACCTAGTC 59.008 50.000 0.00 0.00 44.04 2.59
131 132 2.366266 TGTTGCACGGTCTAAACCTAGT 59.634 45.455 0.00 0.00 44.04 2.57
132 133 2.735134 GTGTTGCACGGTCTAAACCTAG 59.265 50.000 0.00 0.00 44.04 3.02
133 134 2.102757 TGTGTTGCACGGTCTAAACCTA 59.897 45.455 0.00 0.00 44.04 3.08
134 135 1.134340 TGTGTTGCACGGTCTAAACCT 60.134 47.619 0.00 0.00 44.04 3.50
135 136 1.301423 TGTGTTGCACGGTCTAAACC 58.699 50.000 0.00 0.00 42.66 3.27
136 137 3.619233 ATTGTGTTGCACGGTCTAAAC 57.381 42.857 0.00 0.00 37.14 2.01
137 138 4.575236 TGTAATTGTGTTGCACGGTCTAAA 59.425 37.500 0.00 0.00 37.14 1.85
138 139 4.127907 TGTAATTGTGTTGCACGGTCTAA 58.872 39.130 0.00 0.00 37.14 2.10
139 140 3.729966 TGTAATTGTGTTGCACGGTCTA 58.270 40.909 0.00 0.00 37.14 2.59
140 141 2.566913 TGTAATTGTGTTGCACGGTCT 58.433 42.857 0.00 0.00 37.14 3.85
141 142 3.552604 ATGTAATTGTGTTGCACGGTC 57.447 42.857 0.00 0.00 37.14 4.79
154 155 4.644234 TCCAATGCACCGATCAATGTAATT 59.356 37.500 0.00 0.00 36.63 1.40
155 156 4.036734 GTCCAATGCACCGATCAATGTAAT 59.963 41.667 0.00 0.00 0.00 1.89
156 157 3.376859 GTCCAATGCACCGATCAATGTAA 59.623 43.478 0.00 0.00 0.00 2.41
157 158 2.942376 GTCCAATGCACCGATCAATGTA 59.058 45.455 0.00 0.00 0.00 2.29
158 159 1.745087 GTCCAATGCACCGATCAATGT 59.255 47.619 0.00 0.00 0.00 2.71
159 160 1.744522 TGTCCAATGCACCGATCAATG 59.255 47.619 0.00 0.00 0.00 2.82
160 161 2.127271 TGTCCAATGCACCGATCAAT 57.873 45.000 0.00 0.00 0.00 2.57
161 162 1.744522 CATGTCCAATGCACCGATCAA 59.255 47.619 0.00 0.00 0.00 2.57
162 163 1.339920 ACATGTCCAATGCACCGATCA 60.340 47.619 0.00 0.00 0.00 2.92
163 164 1.382522 ACATGTCCAATGCACCGATC 58.617 50.000 0.00 0.00 0.00 3.69
164 165 2.708216 TACATGTCCAATGCACCGAT 57.292 45.000 0.00 0.00 0.00 4.18
165 166 2.708216 ATACATGTCCAATGCACCGA 57.292 45.000 0.00 0.00 0.00 4.69
166 167 5.874261 TCATATATACATGTCCAATGCACCG 59.126 40.000 0.00 0.00 0.00 4.94
167 168 7.870509 ATCATATATACATGTCCAATGCACC 57.129 36.000 0.00 0.00 0.00 5.01
183 184 9.217336 TGTGGCTCCATTCTGTATATCATATAT 57.783 33.333 0.00 0.00 0.00 0.86
184 185 8.608185 TGTGGCTCCATTCTGTATATCATATA 57.392 34.615 0.00 0.00 0.00 0.86
185 186 7.500629 TGTGGCTCCATTCTGTATATCATAT 57.499 36.000 0.00 0.00 0.00 1.78
186 187 6.933514 TGTGGCTCCATTCTGTATATCATA 57.066 37.500 0.00 0.00 0.00 2.15
187 188 5.830799 TGTGGCTCCATTCTGTATATCAT 57.169 39.130 0.00 0.00 0.00 2.45
188 189 5.628797 TTGTGGCTCCATTCTGTATATCA 57.371 39.130 0.00 0.00 0.00 2.15
189 190 6.471146 AGATTGTGGCTCCATTCTGTATATC 58.529 40.000 0.00 0.00 0.00 1.63
190 191 6.445451 AGATTGTGGCTCCATTCTGTATAT 57.555 37.500 0.00 0.00 0.00 0.86
191 192 5.894298 AGATTGTGGCTCCATTCTGTATA 57.106 39.130 0.00 0.00 0.00 1.47
192 193 4.785346 AGATTGTGGCTCCATTCTGTAT 57.215 40.909 0.00 0.00 0.00 2.29
193 194 4.574674 AAGATTGTGGCTCCATTCTGTA 57.425 40.909 0.00 0.00 0.00 2.74
194 195 3.446442 AAGATTGTGGCTCCATTCTGT 57.554 42.857 0.00 0.00 0.00 3.41
195 196 4.946157 AGTTAAGATTGTGGCTCCATTCTG 59.054 41.667 0.00 0.00 0.00 3.02
196 197 5.184892 AGTTAAGATTGTGGCTCCATTCT 57.815 39.130 0.00 0.00 0.00 2.40
197 198 7.715249 TGTATAGTTAAGATTGTGGCTCCATTC 59.285 37.037 0.00 0.00 0.00 2.67
198 199 7.573710 TGTATAGTTAAGATTGTGGCTCCATT 58.426 34.615 0.00 0.00 0.00 3.16
199 200 7.136822 TGTATAGTTAAGATTGTGGCTCCAT 57.863 36.000 0.00 0.00 0.00 3.41
200 201 6.553953 TGTATAGTTAAGATTGTGGCTCCA 57.446 37.500 0.00 0.00 0.00 3.86
201 202 7.272978 TCTTGTATAGTTAAGATTGTGGCTCC 58.727 38.462 0.00 0.00 0.00 4.70
202 203 8.718102 TTCTTGTATAGTTAAGATTGTGGCTC 57.282 34.615 0.00 0.00 33.34 4.70
203 204 9.515226 TTTTCTTGTATAGTTAAGATTGTGGCT 57.485 29.630 0.00 0.00 33.34 4.75
204 205 9.556030 GTTTTCTTGTATAGTTAAGATTGTGGC 57.444 33.333 0.00 0.00 33.34 5.01
215 216 9.892130 CCCATCTTCTAGTTTTCTTGTATAGTT 57.108 33.333 0.00 0.00 0.00 2.24
216 217 7.988028 GCCCATCTTCTAGTTTTCTTGTATAGT 59.012 37.037 0.00 0.00 0.00 2.12
217 218 7.442666 GGCCCATCTTCTAGTTTTCTTGTATAG 59.557 40.741 0.00 0.00 0.00 1.31
218 219 7.280356 GGCCCATCTTCTAGTTTTCTTGTATA 58.720 38.462 0.00 0.00 0.00 1.47
219 220 6.122964 GGCCCATCTTCTAGTTTTCTTGTAT 58.877 40.000 0.00 0.00 0.00 2.29
220 221 5.497474 GGCCCATCTTCTAGTTTTCTTGTA 58.503 41.667 0.00 0.00 0.00 2.41
221 222 4.336280 GGCCCATCTTCTAGTTTTCTTGT 58.664 43.478 0.00 0.00 0.00 3.16
222 223 3.696548 GGGCCCATCTTCTAGTTTTCTTG 59.303 47.826 19.95 0.00 0.00 3.02
223 224 3.309193 GGGGCCCATCTTCTAGTTTTCTT 60.309 47.826 26.86 0.00 0.00 2.52
224 225 2.242452 GGGGCCCATCTTCTAGTTTTCT 59.758 50.000 26.86 0.00 0.00 2.52
225 226 2.025321 TGGGGCCCATCTTCTAGTTTTC 60.025 50.000 24.76 0.22 0.00 2.29
226 227 2.000048 TGGGGCCCATCTTCTAGTTTT 59.000 47.619 24.76 0.00 0.00 2.43
227 228 1.566231 CTGGGGCCCATCTTCTAGTTT 59.434 52.381 28.95 0.00 30.82 2.66
228 229 1.216990 CTGGGGCCCATCTTCTAGTT 58.783 55.000 28.95 0.00 30.82 2.24
229 230 0.343372 TCTGGGGCCCATCTTCTAGT 59.657 55.000 28.95 0.00 30.82 2.57
230 231 0.761802 GTCTGGGGCCCATCTTCTAG 59.238 60.000 28.95 13.01 30.82 2.43
231 232 0.044092 TGTCTGGGGCCCATCTTCTA 59.956 55.000 28.95 6.86 30.82 2.10
232 233 1.229951 TGTCTGGGGCCCATCTTCT 60.230 57.895 28.95 0.00 30.82 2.85
233 234 1.077429 GTGTCTGGGGCCCATCTTC 60.077 63.158 28.95 16.56 30.82 2.87
234 235 1.434513 TTGTGTCTGGGGCCCATCTT 61.435 55.000 28.95 0.00 30.82 2.40
235 236 1.217057 ATTGTGTCTGGGGCCCATCT 61.217 55.000 28.95 3.67 30.82 2.90
236 237 0.550914 TATTGTGTCTGGGGCCCATC 59.449 55.000 28.95 22.04 30.82 3.51
237 238 1.234806 ATATTGTGTCTGGGGCCCAT 58.765 50.000 28.95 12.29 30.82 4.00
238 239 1.493022 GTATATTGTGTCTGGGGCCCA 59.507 52.381 26.87 26.87 0.00 5.36
239 240 1.493022 TGTATATTGTGTCTGGGGCCC 59.507 52.381 18.17 18.17 0.00 5.80
240 241 3.149196 CATGTATATTGTGTCTGGGGCC 58.851 50.000 0.00 0.00 0.00 5.80
241 242 2.554032 GCATGTATATTGTGTCTGGGGC 59.446 50.000 0.00 0.00 0.00 5.80
242 243 3.817084 CTGCATGTATATTGTGTCTGGGG 59.183 47.826 0.00 0.00 0.00 4.96
243 244 4.707105 TCTGCATGTATATTGTGTCTGGG 58.293 43.478 0.00 0.00 0.00 4.45
244 245 5.363101 ACTCTGCATGTATATTGTGTCTGG 58.637 41.667 0.00 0.00 0.00 3.86
245 246 9.866798 ATATACTCTGCATGTATATTGTGTCTG 57.133 33.333 18.82 0.00 39.28 3.51
253 254 9.376075 GCTGTTGAATATACTCTGCATGTATAT 57.624 33.333 18.82 18.82 42.19 0.86
254 255 8.588472 AGCTGTTGAATATACTCTGCATGTATA 58.412 33.333 16.78 16.78 37.30 1.47
255 256 7.448420 AGCTGTTGAATATACTCTGCATGTAT 58.552 34.615 14.28 14.28 35.19 2.29
256 257 6.820335 AGCTGTTGAATATACTCTGCATGTA 58.180 36.000 0.00 0.00 0.00 2.29
257 258 5.678583 AGCTGTTGAATATACTCTGCATGT 58.321 37.500 0.00 0.00 0.00 3.21
258 259 5.178996 GGAGCTGTTGAATATACTCTGCATG 59.821 44.000 0.00 0.00 0.00 4.06
259 260 5.071519 AGGAGCTGTTGAATATACTCTGCAT 59.928 40.000 0.00 0.00 0.00 3.96
260 261 4.406972 AGGAGCTGTTGAATATACTCTGCA 59.593 41.667 0.00 0.00 0.00 4.41
261 262 4.954875 AGGAGCTGTTGAATATACTCTGC 58.045 43.478 0.00 0.00 0.00 4.26
262 263 6.040955 TGGTAGGAGCTGTTGAATATACTCTG 59.959 42.308 0.00 0.00 0.00 3.35
263 264 6.041069 GTGGTAGGAGCTGTTGAATATACTCT 59.959 42.308 0.00 0.00 0.00 3.24
264 265 6.217294 GTGGTAGGAGCTGTTGAATATACTC 58.783 44.000 0.00 0.00 0.00 2.59
265 266 5.221263 CGTGGTAGGAGCTGTTGAATATACT 60.221 44.000 0.00 0.00 0.00 2.12
266 267 4.982916 CGTGGTAGGAGCTGTTGAATATAC 59.017 45.833 0.00 0.00 0.00 1.47
267 268 4.500887 GCGTGGTAGGAGCTGTTGAATATA 60.501 45.833 0.00 0.00 0.00 0.86
268 269 3.741388 GCGTGGTAGGAGCTGTTGAATAT 60.741 47.826 0.00 0.00 0.00 1.28
269 270 2.418197 GCGTGGTAGGAGCTGTTGAATA 60.418 50.000 0.00 0.00 0.00 1.75
270 271 1.676014 GCGTGGTAGGAGCTGTTGAAT 60.676 52.381 0.00 0.00 0.00 2.57
271 272 0.320421 GCGTGGTAGGAGCTGTTGAA 60.320 55.000 0.00 0.00 0.00 2.69
272 273 1.292223 GCGTGGTAGGAGCTGTTGA 59.708 57.895 0.00 0.00 0.00 3.18
273 274 2.094659 CGCGTGGTAGGAGCTGTTG 61.095 63.158 0.00 0.00 0.00 3.33
274 275 2.261671 CGCGTGGTAGGAGCTGTT 59.738 61.111 0.00 0.00 0.00 3.16
275 276 2.989824 ACGCGTGGTAGGAGCTGT 60.990 61.111 12.93 0.00 0.00 4.40
276 277 2.507102 CACGCGTGGTAGGAGCTG 60.507 66.667 31.15 0.89 0.00 4.24
277 278 3.760035 CCACGCGTGGTAGGAGCT 61.760 66.667 42.92 0.58 45.53 4.09
297 298 2.257286 GATGCATGGCAACGCTCGTT 62.257 55.000 2.46 1.37 43.62 3.85
298 299 2.747460 ATGCATGGCAACGCTCGT 60.747 55.556 12.69 0.00 43.62 4.18
299 300 2.023741 GATGCATGGCAACGCTCG 59.976 61.111 2.46 0.00 43.62 5.03
300 301 2.023741 CGATGCATGGCAACGCTC 59.976 61.111 2.46 7.44 46.21 5.03
304 305 3.814268 ACGGCGATGCATGGCAAC 61.814 61.111 30.93 16.17 43.62 4.17
305 306 3.813143 CACGGCGATGCATGGCAA 61.813 61.111 30.93 0.00 43.62 4.52
313 314 2.981560 AAGCAAAGGCACGGCGATG 61.982 57.895 16.62 9.66 44.61 3.84
314 315 2.672996 AAGCAAAGGCACGGCGAT 60.673 55.556 16.62 0.00 44.61 4.58
315 316 3.659092 CAAGCAAAGGCACGGCGA 61.659 61.111 16.62 0.00 44.61 5.54
318 319 4.705519 CGGCAAGCAAAGGCACGG 62.706 66.667 0.00 0.00 44.61 4.94
319 320 2.952291 AAACGGCAAGCAAAGGCACG 62.952 55.000 0.00 0.00 44.61 5.34
320 321 0.809636 AAAACGGCAAGCAAAGGCAC 60.810 50.000 0.00 0.00 44.61 5.01
321 322 0.529555 GAAAACGGCAAGCAAAGGCA 60.530 50.000 0.00 0.00 44.61 4.75
322 323 1.221466 GGAAAACGGCAAGCAAAGGC 61.221 55.000 0.00 0.00 41.61 4.35
323 324 0.103937 TGGAAAACGGCAAGCAAAGG 59.896 50.000 0.00 0.00 0.00 3.11
324 325 1.794116 CATGGAAAACGGCAAGCAAAG 59.206 47.619 0.00 0.00 0.00 2.77
325 326 1.863267 CATGGAAAACGGCAAGCAAA 58.137 45.000 0.00 0.00 0.00 3.68
326 327 0.599728 GCATGGAAAACGGCAAGCAA 60.600 50.000 0.00 0.00 0.00 3.91
327 328 1.006337 GCATGGAAAACGGCAAGCA 60.006 52.632 0.00 0.00 0.00 3.91
328 329 1.737735 GGCATGGAAAACGGCAAGC 60.738 57.895 0.00 0.00 0.00 4.01
329 330 1.444212 CGGCATGGAAAACGGCAAG 60.444 57.895 0.00 0.00 0.00 4.01
330 331 2.647875 CGGCATGGAAAACGGCAA 59.352 55.556 0.00 0.00 0.00 4.52
331 332 3.369400 CCGGCATGGAAAACGGCA 61.369 61.111 0.00 0.00 42.00 5.69
394 396 4.026357 GGGGAGGGGGTCAGGACT 62.026 72.222 0.00 0.00 0.00 3.85
399 401 3.216371 AAGAGGGGGAGGGGGTCA 61.216 66.667 0.00 0.00 0.00 4.02
400 402 2.367107 GAAGAGGGGGAGGGGGTC 60.367 72.222 0.00 0.00 0.00 4.46
401 403 4.040198 GGAAGAGGGGGAGGGGGT 62.040 72.222 0.00 0.00 0.00 4.95
409 411 0.036875 GACACAAGGTGGAAGAGGGG 59.963 60.000 1.07 0.00 37.94 4.79
411 413 0.320771 CCGACACAAGGTGGAAGAGG 60.321 60.000 1.07 0.00 37.94 3.69
412 414 0.393077 ACCGACACAAGGTGGAAGAG 59.607 55.000 1.07 0.00 41.10 2.85
413 415 2.523440 ACCGACACAAGGTGGAAGA 58.477 52.632 1.07 0.00 41.10 2.87
465 467 0.733223 GAAGTCTCGCCAGGAACGAC 60.733 60.000 0.00 0.00 35.35 4.34
488 490 0.753262 AGACAAGCACTGACGTCCTT 59.247 50.000 14.12 6.02 0.00 3.36
499 501 3.673902 TCAATCGAATTCCAGACAAGCA 58.326 40.909 0.00 0.00 0.00 3.91
504 506 2.609459 ACGCATCAATCGAATTCCAGAC 59.391 45.455 0.00 0.00 0.00 3.51
505 507 2.866156 GACGCATCAATCGAATTCCAGA 59.134 45.455 0.00 0.00 0.00 3.86
579 581 5.758296 AGTTAAACACTGTACTGTGACATGG 59.242 40.000 32.00 11.04 40.12 3.66
616 622 5.594317 AGTAGAGTGCTTGACAATTTTGGTT 59.406 36.000 0.00 0.00 0.00 3.67
717 723 4.823157 TGCCGAAATAGTAGTAAAGTGCA 58.177 39.130 0.00 0.00 0.00 4.57
727 733 5.029807 TCACCATTCATGCCGAAATAGTA 57.970 39.130 0.00 0.00 37.12 1.82
730 736 2.618241 GCTCACCATTCATGCCGAAATA 59.382 45.455 0.00 0.00 37.12 1.40
732 738 0.810648 GCTCACCATTCATGCCGAAA 59.189 50.000 0.00 0.00 37.12 3.46
768 774 8.202137 AGTTGATATACACGGTAAAGTGCTTAT 58.798 33.333 0.00 0.00 45.45 1.73
786 792 8.540492 CGATTCGCAAGTTACTTAAGTTGATAT 58.460 33.333 14.49 8.55 45.11 1.63
812 818 3.187432 GCAAGGACTAAAGAGCAGTTCAC 59.813 47.826 0.00 0.00 0.00 3.18
871 885 0.943673 CGTGTGATGGTTGAACTGCA 59.056 50.000 0.00 0.00 0.00 4.41
891 905 3.127589 TGTTGGTTACGTGTGATCAGTG 58.872 45.455 0.00 0.00 0.00 3.66
892 906 3.181469 ACTGTTGGTTACGTGTGATCAGT 60.181 43.478 0.00 3.41 0.00 3.41
893 907 3.390135 ACTGTTGGTTACGTGTGATCAG 58.610 45.455 0.00 2.76 0.00 2.90
894 908 3.181474 TGACTGTTGGTTACGTGTGATCA 60.181 43.478 0.00 0.00 0.00 2.92
895 909 3.386486 TGACTGTTGGTTACGTGTGATC 58.614 45.455 0.00 0.00 0.00 2.92
896 910 3.462483 TGACTGTTGGTTACGTGTGAT 57.538 42.857 0.00 0.00 0.00 3.06
897 911 2.963548 TGACTGTTGGTTACGTGTGA 57.036 45.000 0.00 0.00 0.00 3.58
898 912 3.486209 GGTTTGACTGTTGGTTACGTGTG 60.486 47.826 0.00 0.00 0.00 3.82
899 913 2.679336 GGTTTGACTGTTGGTTACGTGT 59.321 45.455 0.00 0.00 0.00 4.49
900 914 2.032426 GGGTTTGACTGTTGGTTACGTG 59.968 50.000 0.00 0.00 0.00 4.49
901 915 2.291365 GGGTTTGACTGTTGGTTACGT 58.709 47.619 0.00 0.00 0.00 3.57
902 916 2.290464 TGGGTTTGACTGTTGGTTACG 58.710 47.619 0.00 0.00 0.00 3.18
903 917 3.444388 TGTTGGGTTTGACTGTTGGTTAC 59.556 43.478 0.00 0.00 0.00 2.50
1011 1025 3.506067 GGAGGTAAAATGGTGAACTGTGG 59.494 47.826 0.00 0.00 0.00 4.17
1148 1162 2.186826 GTTGCCTTGCACGACAGGT 61.187 57.895 4.14 0.00 38.71 4.00
1356 1379 0.574454 GCAGCACGAAGTCGATGATC 59.426 55.000 7.87 0.00 41.61 2.92
1644 1670 5.382618 TGCATGCATGTGTATAAACAACA 57.617 34.783 26.79 9.53 37.36 3.33
1685 1725 1.159285 TACTGACTGTACACCCGACG 58.841 55.000 0.00 0.00 0.00 5.12
1703 1764 3.486875 CGACACGTACTCATGCAGTCATA 60.487 47.826 0.00 0.00 36.43 2.15
1774 1906 0.892358 TCAGACCGCTACCGACAAGT 60.892 55.000 0.00 0.00 36.29 3.16
1775 1907 0.456312 GTCAGACCGCTACCGACAAG 60.456 60.000 0.00 0.00 36.29 3.16
1777 1909 0.892358 AAGTCAGACCGCTACCGACA 60.892 55.000 0.00 0.00 36.29 4.35
1778 1910 0.179169 GAAGTCAGACCGCTACCGAC 60.179 60.000 0.00 0.00 36.29 4.79
1779 1911 0.322277 AGAAGTCAGACCGCTACCGA 60.322 55.000 0.00 0.00 36.29 4.69
1781 1913 2.338500 CAAAGAAGTCAGACCGCTACC 58.662 52.381 0.00 0.00 0.00 3.18
1782 1914 2.288886 ACCAAAGAAGTCAGACCGCTAC 60.289 50.000 0.00 0.00 0.00 3.58
1783 1915 1.968493 ACCAAAGAAGTCAGACCGCTA 59.032 47.619 0.00 0.00 0.00 4.26
1784 1916 0.759346 ACCAAAGAAGTCAGACCGCT 59.241 50.000 0.00 0.00 0.00 5.52
1786 1918 0.868406 GCACCAAAGAAGTCAGACCG 59.132 55.000 0.00 0.00 0.00 4.79
1790 1922 0.236711 CGCAGCACCAAAGAAGTCAG 59.763 55.000 0.00 0.00 0.00 3.51
1797 1929 1.204062 CACGTACGCAGCACCAAAG 59.796 57.895 16.72 0.00 0.00 2.77
2095 2234 7.186804 GCGTCTGCAAATATTGTGTATTAGTT 58.813 34.615 0.00 0.00 42.15 2.24
2096 2235 6.715464 GCGTCTGCAAATATTGTGTATTAGT 58.285 36.000 0.00 0.00 42.15 2.24
2116 2480 3.994392 TCAAGAGATTTTGGTACTGCGTC 59.006 43.478 0.00 0.00 0.00 5.19
2117 2481 4.002906 TCAAGAGATTTTGGTACTGCGT 57.997 40.909 0.00 0.00 0.00 5.24
2118 2482 4.452455 ACTTCAAGAGATTTTGGTACTGCG 59.548 41.667 0.00 0.00 0.00 5.18
2119 2483 5.948992 ACTTCAAGAGATTTTGGTACTGC 57.051 39.130 0.00 0.00 0.00 4.40
2122 2486 8.169268 CGTGATAACTTCAAGAGATTTTGGTAC 58.831 37.037 0.00 0.00 36.07 3.34
2123 2487 7.876068 ACGTGATAACTTCAAGAGATTTTGGTA 59.124 33.333 0.00 0.00 37.29 3.25
2125 2489 7.133891 ACGTGATAACTTCAAGAGATTTTGG 57.866 36.000 0.00 0.00 37.29 3.28
2141 2505 9.634163 ACGCAGATTGATATATTAACGTGATAA 57.366 29.630 0.00 0.00 0.00 1.75
2146 2510 5.164090 CGCACGCAGATTGATATATTAACGT 60.164 40.000 0.00 0.00 0.00 3.99
2147 2511 5.164090 ACGCACGCAGATTGATATATTAACG 60.164 40.000 0.00 0.00 0.00 3.18
2148 2512 6.153212 ACGCACGCAGATTGATATATTAAC 57.847 37.500 0.00 0.00 0.00 2.01
2149 2513 5.060446 CGACGCACGCAGATTGATATATTAA 59.940 40.000 0.00 0.00 34.51 1.40
2151 2515 3.364920 CGACGCACGCAGATTGATATATT 59.635 43.478 0.00 0.00 34.51 1.28
2153 2517 2.287368 ACGACGCACGCAGATTGATATA 60.287 45.455 0.00 0.00 46.94 0.86
2155 2519 0.179148 ACGACGCACGCAGATTGATA 60.179 50.000 0.00 0.00 46.94 2.15
2157 2521 1.614227 GAACGACGCACGCAGATTGA 61.614 55.000 0.00 0.00 46.94 2.57
2160 2524 2.049526 TGAACGACGCACGCAGAT 60.050 55.556 0.00 0.00 46.94 2.90
2162 2526 2.088763 ATCTGAACGACGCACGCAG 61.089 57.895 0.00 0.00 46.94 5.18
2164 2528 2.391821 CATCTGAACGACGCACGC 59.608 61.111 0.00 0.00 46.94 5.34
2166 2530 0.944311 ACACCATCTGAACGACGCAC 60.944 55.000 0.00 0.00 0.00 5.34
2167 2531 0.666274 GACACCATCTGAACGACGCA 60.666 55.000 0.00 0.00 0.00 5.24
2169 2533 0.109919 TCGACACCATCTGAACGACG 60.110 55.000 0.00 0.00 31.40 5.12
2170 2534 1.068472 ACTCGACACCATCTGAACGAC 60.068 52.381 0.00 0.00 32.35 4.34
2171 2535 1.068541 CACTCGACACCATCTGAACGA 60.069 52.381 0.00 0.00 33.73 3.85
2173 2537 1.071605 GCACTCGACACCATCTGAAC 58.928 55.000 0.00 0.00 0.00 3.18
2174 2538 0.037326 GGCACTCGACACCATCTGAA 60.037 55.000 0.00 0.00 0.00 3.02
2281 2695 0.884704 GTCCAGATGTGCACCGTGTT 60.885 55.000 15.69 0.00 0.00 3.32
2282 2696 1.301716 GTCCAGATGTGCACCGTGT 60.302 57.895 15.69 0.00 0.00 4.49
2437 2851 2.355481 GTCGGCGTCGGTGAAGTT 60.355 61.111 10.62 0.00 36.95 2.66
2548 2962 2.753043 GCCGACGTCCTGGTAGGA 60.753 66.667 10.58 0.00 43.43 2.94
2591 3005 1.522580 GTCCTGCGGGATCTCTTGC 60.523 63.158 19.55 0.00 44.33 4.01
2958 3393 3.097728 GGCACGAGTGACACGACG 61.098 66.667 20.35 20.35 38.82 5.12
2967 3402 4.988598 CCGCACCTTGGCACGAGT 62.989 66.667 0.00 0.00 0.00 4.18
3126 3561 1.808411 ACATACGGTGCTTCACTTGG 58.192 50.000 0.00 0.00 34.40 3.61
3127 3562 2.344441 CGTACATACGGTGCTTCACTTG 59.656 50.000 3.47 0.00 45.30 3.16
3128 3563 2.602878 CGTACATACGGTGCTTCACTT 58.397 47.619 3.47 0.00 45.30 3.16
3129 3564 2.273370 CGTACATACGGTGCTTCACT 57.727 50.000 3.47 0.00 45.30 3.41
3177 3612 2.897271 ATGGGAGTGCACCATTACAA 57.103 45.000 14.63 0.00 46.25 2.41
3313 3930 9.358872 CAGTCGACTTACCTATACGTGTATATA 57.641 37.037 17.26 0.00 0.00 0.86
3314 3931 8.090831 TCAGTCGACTTACCTATACGTGTATAT 58.909 37.037 17.26 0.00 0.00 0.86
3315 3932 7.433680 TCAGTCGACTTACCTATACGTGTATA 58.566 38.462 17.26 0.22 0.00 1.47
3316 3933 6.283694 TCAGTCGACTTACCTATACGTGTAT 58.716 40.000 17.26 0.00 0.00 2.29
3317 3934 5.660460 TCAGTCGACTTACCTATACGTGTA 58.340 41.667 17.26 0.00 0.00 2.90
3318 3935 4.507710 TCAGTCGACTTACCTATACGTGT 58.492 43.478 17.26 0.00 0.00 4.49
3319 3936 5.475273 TTCAGTCGACTTACCTATACGTG 57.525 43.478 17.26 0.60 0.00 4.49
3320 3937 6.500684 TTTTCAGTCGACTTACCTATACGT 57.499 37.500 17.26 0.00 0.00 3.57
3327 3944 7.691050 CCGAAATTAATTTTCAGTCGACTTACC 59.309 37.037 17.26 0.00 43.32 2.85
3412 4029 6.310467 GTCGCTCAAACAATATACAGACTTGA 59.690 38.462 0.00 0.00 0.00 3.02
3432 4049 1.080705 GTGAAGGTGTAGCGTCGCT 60.081 57.895 25.08 25.08 43.41 4.93
3665 4325 5.347364 CGCCCATGTTACAAAAACATTAAGG 59.653 40.000 0.74 4.42 38.69 2.69
3687 4347 1.852067 AAGTCATCCCGCAACAACGC 61.852 55.000 0.00 0.00 0.00 4.84
3766 4427 1.656652 CAACTCTATCAACCGCCCAG 58.343 55.000 0.00 0.00 0.00 4.45
3809 4472 2.357034 ACGTGTGCAGCCGTTAGG 60.357 61.111 4.84 0.00 41.62 2.69
3812 4475 4.849310 ACCACGTGTGCAGCCGTT 62.849 61.111 15.65 0.00 34.59 4.44
3824 4487 2.165641 TCAGGACTATAGTTGCACCACG 59.834 50.000 6.88 0.00 0.00 4.94
3829 4492 4.036852 CGACTGATCAGGACTATAGTTGCA 59.963 45.833 26.08 0.00 0.00 4.08
3894 4590 3.515901 TGCAACAAGGTTTTTGTACCCTT 59.484 39.130 0.00 0.00 39.08 3.95
3895 4591 3.100671 TGCAACAAGGTTTTTGTACCCT 58.899 40.909 0.00 0.00 39.08 4.34
3896 4592 3.528597 TGCAACAAGGTTTTTGTACCC 57.471 42.857 0.00 0.00 39.08 3.69
3897 4593 5.391097 GGTTTTGCAACAAGGTTTTTGTACC 60.391 40.000 0.00 0.00 35.01 3.34
3898 4594 5.410132 AGGTTTTGCAACAAGGTTTTTGTAC 59.590 36.000 0.00 0.00 34.15 2.90
3899 4595 5.552178 AGGTTTTGCAACAAGGTTTTTGTA 58.448 33.333 0.00 0.00 34.15 2.41
3926 4622 4.223700 TCTTGCTGCAGGAGATTAGAGAAA 59.776 41.667 17.12 0.00 0.00 2.52
3957 4656 0.535102 AGGGAACAAGAGGTTGTGCG 60.535 55.000 0.00 0.00 46.68 5.34
3970 4669 5.920840 GTCTTGTTGCAGAAAAATAGGGAAC 59.079 40.000 0.00 0.00 32.99 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.