Multiple sequence alignment - TraesCS2B01G491000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G491000 chr2B 100.000 4508 0 0 1 4508 688481649 688477142 0.000000e+00 8325.0
1 TraesCS2B01G491000 chr2B 94.192 1188 57 4 2249 3427 689143339 689142155 0.000000e+00 1801.0
2 TraesCS2B01G491000 chr2B 94.089 1032 43 3 999 2029 689144373 689143359 0.000000e+00 1552.0
3 TraesCS2B01G491000 chr2B 83.126 883 126 14 2362 3243 689765729 689766589 0.000000e+00 784.0
4 TraesCS2B01G491000 chr2B 89.716 457 42 3 1192 1644 689764722 689765177 3.020000e-161 579.0
5 TraesCS2B01G491000 chr2B 90.034 291 28 1 1732 2022 689765365 689765654 4.260000e-100 375.0
6 TraesCS2B01G491000 chr2B 90.551 127 10 1 8 132 474902857 474902983 2.790000e-37 167.0
7 TraesCS2B01G491000 chr2B 95.876 97 4 0 2135 2231 213252376 213252472 1.680000e-34 158.0
8 TraesCS2B01G491000 chr6B 96.649 1104 8 11 3434 4508 103701063 103702166 0.000000e+00 1807.0
9 TraesCS2B01G491000 chr6B 96.804 1095 7 1 3442 4508 103291978 103293072 0.000000e+00 1803.0
10 TraesCS2B01G491000 chr6B 86.364 242 24 5 355 594 18745174 18744940 5.790000e-64 255.0
11 TraesCS2B01G491000 chr3A 96.712 1095 8 9 3442 4508 137590333 137589239 0.000000e+00 1797.0
12 TraesCS2B01G491000 chr3A 89.069 247 12 6 4011 4257 544398555 544398786 4.410000e-75 292.0
13 TraesCS2B01G491000 chr3A 100.000 29 0 0 3921 3949 15790354 15790382 2.000000e-03 54.7
14 TraesCS2B01G491000 chr5B 96.624 1096 9 1 3441 4508 111910671 111911766 0.000000e+00 1794.0
15 TraesCS2B01G491000 chr5B 90.269 483 32 3 3790 4272 335042283 335041816 6.410000e-173 617.0
16 TraesCS2B01G491000 chr5B 95.833 336 12 2 3442 3776 335043111 335042777 3.970000e-150 542.0
17 TraesCS2B01G491000 chr5B 91.000 100 9 0 2037 2136 394253483 394253582 7.870000e-28 135.0
18 TraesCS2B01G491000 chr5B 91.000 100 9 0 2037 2136 394256141 394256240 7.870000e-28 135.0
19 TraesCS2B01G491000 chr5B 84.211 76 12 0 3441 3516 61392911 61392986 1.740000e-09 75.0
20 TraesCS2B01G491000 chr7A 96.621 1095 9 1 3442 4508 460588416 460587322 0.000000e+00 1792.0
21 TraesCS2B01G491000 chr7A 90.000 100 10 0 2037 2136 439786519 439786420 3.660000e-26 130.0
22 TraesCS2B01G491000 chr6A 96.438 1095 11 7 3442 4508 555813937 555815031 0.000000e+00 1781.0
23 TraesCS2B01G491000 chr6A 92.308 104 8 0 2128 2231 596351535 596351432 1.010000e-31 148.0
24 TraesCS2B01G491000 chr2D 94.966 1033 47 4 999 2029 572954351 572953322 0.000000e+00 1615.0
25 TraesCS2B01G491000 chr2D 93.960 1043 54 5 2287 3325 572953296 572952259 0.000000e+00 1568.0
26 TraesCS2B01G491000 chr2D 84.083 867 115 14 2378 3243 573904299 573905143 0.000000e+00 815.0
27 TraesCS2B01G491000 chr2D 90.570 456 40 2 1192 1644 573903363 573903818 6.450000e-168 601.0
28 TraesCS2B01G491000 chr2D 95.522 335 11 3 3442 3773 60546609 60546942 2.390000e-147 532.0
29 TraesCS2B01G491000 chr2D 90.741 270 25 0 1732 2001 573904017 573904286 1.190000e-95 361.0
30 TraesCS2B01G491000 chr2D 89.899 198 19 1 4310 4506 60547014 60547211 2.080000e-63 254.0
31 TraesCS2B01G491000 chr2D 91.339 127 9 1 8 132 9787673 9787799 6.000000e-39 172.0
32 TraesCS2B01G491000 chr2A 93.271 1070 60 5 2287 3348 712188311 712187246 0.000000e+00 1567.0
33 TraesCS2B01G491000 chr2A 92.759 1091 43 4 3444 4506 155831874 155830792 0.000000e+00 1544.0
34 TraesCS2B01G491000 chr2A 93.726 781 37 6 879 1647 712189683 712188903 0.000000e+00 1160.0
35 TraesCS2B01G491000 chr2A 84.314 867 113 14 2378 3243 712345676 712346520 0.000000e+00 826.0
36 TraesCS2B01G491000 chr2A 94.859 389 17 2 1641 2029 712188718 712188333 4.990000e-169 604.0
37 TraesCS2B01G491000 chr2A 90.372 457 41 1 1191 1644 712344730 712345186 8.350000e-167 597.0
38 TraesCS2B01G491000 chr2A 79.462 706 104 33 6 693 712190595 712189913 3.180000e-126 462.0
39 TraesCS2B01G491000 chr2A 89.744 273 28 0 1729 2001 712345391 712345663 2.580000e-92 350.0
40 TraesCS2B01G491000 chr2A 83.784 222 32 3 127 347 335835601 335835383 1.640000e-49 207.0
41 TraesCS2B01G491000 chr2A 84.848 132 20 0 3873 4004 361176042 361175911 2.830000e-27 134.0
42 TraesCS2B01G491000 chr2A 86.441 59 3 5 840 893 712189763 712189705 4.870000e-05 60.2
43 TraesCS2B01G491000 chr1A 92.890 1097 40 14 3441 4506 94506537 94507626 0.000000e+00 1559.0
44 TraesCS2B01G491000 chr7B 86.413 552 35 10 3976 4506 41312401 41312933 6.540000e-158 568.0
45 TraesCS2B01G491000 chr7B 95.000 340 15 2 3438 3776 41311930 41312268 2.390000e-147 532.0
46 TraesCS2B01G491000 chr7B 86.364 242 24 3 355 594 137679747 137679981 5.790000e-64 255.0
47 TraesCS2B01G491000 chr7B 88.321 137 10 3 1 132 105254117 105253982 4.670000e-35 159.0
48 TraesCS2B01G491000 chr7B 91.000 100 9 0 2037 2136 645515311 645515212 7.870000e-28 135.0
49 TraesCS2B01G491000 chr7B 89.583 96 10 0 2041 2136 393318450 393318355 6.120000e-24 122.0
50 TraesCS2B01G491000 chr5A 92.239 335 20 4 3442 3776 410466436 410466764 1.900000e-128 470.0
51 TraesCS2B01G491000 chr5A 88.664 247 13 7 4011 4257 410467035 410467266 2.050000e-73 287.0
52 TraesCS2B01G491000 chr5A 90.551 127 10 1 8 132 657430743 657430869 2.790000e-37 167.0
53 TraesCS2B01G491000 chr5A 90.826 109 9 1 2123 2231 13759478 13759371 1.310000e-30 145.0
54 TraesCS2B01G491000 chr5A 91.000 100 9 0 2037 2136 311019848 311019749 7.870000e-28 135.0
55 TraesCS2B01G491000 chr5A 90.625 96 9 0 2041 2136 676370180 676370275 1.320000e-25 128.0
56 TraesCS2B01G491000 chr5D 87.190 242 22 5 355 594 187964022 187963788 2.670000e-67 267.0
57 TraesCS2B01G491000 chr5D 86.364 242 24 3 355 594 503306757 503306991 5.790000e-64 255.0
58 TraesCS2B01G491000 chr5D 86.325 234 23 4 355 586 6162025 6161799 3.480000e-61 246.0
59 TraesCS2B01G491000 chr5D 87.624 202 20 1 355 556 357571992 357572188 3.510000e-56 230.0
60 TraesCS2B01G491000 chr5D 84.834 211 28 3 135 344 503282351 503282558 4.570000e-50 209.0
61 TraesCS2B01G491000 chr5D 90.551 127 10 1 8 132 503289845 503289971 2.790000e-37 167.0
62 TraesCS2B01G491000 chr1D 86.777 242 23 3 355 594 254449902 254450136 1.240000e-65 261.0
63 TraesCS2B01G491000 chr1D 85.537 242 25 5 355 594 51838874 51838641 1.250000e-60 244.0
64 TraesCS2B01G491000 chr1D 84.360 211 30 2 135 344 51883008 51882800 2.130000e-48 204.0
65 TraesCS2B01G491000 chr1D 84.360 211 29 3 135 344 254401165 254401372 2.130000e-48 204.0
66 TraesCS2B01G491000 chrUn 84.579 214 29 3 135 347 261574054 261573844 4.570000e-50 209.0
67 TraesCS2B01G491000 chr4A 84.834 211 28 3 135 344 73815695 73815488 4.570000e-50 209.0
68 TraesCS2B01G491000 chr4A 90.551 127 10 1 8 132 309504636 309504510 2.790000e-37 167.0
69 TraesCS2B01G491000 chr7D 84.360 211 29 3 135 344 231599527 231599734 2.130000e-48 204.0
70 TraesCS2B01G491000 chr7D 92.500 40 3 0 3916 3955 618164448 618164409 1.750000e-04 58.4
71 TraesCS2B01G491000 chr3D 84.360 211 29 3 135 344 598873863 598874070 2.130000e-48 204.0
72 TraesCS2B01G491000 chr6D 90.511 137 8 2 1 132 45509049 45508913 4.630000e-40 176.0
73 TraesCS2B01G491000 chr6D 93.069 101 7 0 2131 2231 461414913 461414813 1.010000e-31 148.0
74 TraesCS2B01G491000 chr6D 90.625 96 9 0 2041 2136 199351548 199351453 1.320000e-25 128.0
75 TraesCS2B01G491000 chr4B 90.551 127 10 1 8 132 308681259 308681133 2.790000e-37 167.0
76 TraesCS2B01G491000 chr4B 94.000 100 5 1 2133 2231 551695764 551695863 2.810000e-32 150.0
77 TraesCS2B01G491000 chr4B 94.000 100 5 1 2133 2231 551749343 551749442 2.810000e-32 150.0
78 TraesCS2B01G491000 chr3B 94.000 100 6 0 2132 2231 512871654 512871753 7.810000e-33 152.0
79 TraesCS2B01G491000 chr3B 93.204 103 7 0 2129 2231 779534216 779534318 7.810000e-33 152.0
80 TraesCS2B01G491000 chr1B 94.792 96 5 0 2136 2231 288977759 288977664 2.810000e-32 150.0
81 TraesCS2B01G491000 chr4D 90.625 96 9 0 2041 2136 36413235 36413330 1.320000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G491000 chr2B 688477142 688481649 4507 True 8325.000000 8325 100.000000 1 4508 1 chr2B.!!$R1 4507
1 TraesCS2B01G491000 chr2B 689142155 689144373 2218 True 1676.500000 1801 94.140500 999 3427 2 chr2B.!!$R2 2428
2 TraesCS2B01G491000 chr2B 689764722 689766589 1867 False 579.333333 784 87.625333 1192 3243 3 chr2B.!!$F3 2051
3 TraesCS2B01G491000 chr6B 103701063 103702166 1103 False 1807.000000 1807 96.649000 3434 4508 1 chr6B.!!$F2 1074
4 TraesCS2B01G491000 chr6B 103291978 103293072 1094 False 1803.000000 1803 96.804000 3442 4508 1 chr6B.!!$F1 1066
5 TraesCS2B01G491000 chr3A 137589239 137590333 1094 True 1797.000000 1797 96.712000 3442 4508 1 chr3A.!!$R1 1066
6 TraesCS2B01G491000 chr5B 111910671 111911766 1095 False 1794.000000 1794 96.624000 3441 4508 1 chr5B.!!$F2 1067
7 TraesCS2B01G491000 chr5B 335041816 335043111 1295 True 579.500000 617 93.051000 3442 4272 2 chr5B.!!$R1 830
8 TraesCS2B01G491000 chr7A 460587322 460588416 1094 True 1792.000000 1792 96.621000 3442 4508 1 chr7A.!!$R2 1066
9 TraesCS2B01G491000 chr6A 555813937 555815031 1094 False 1781.000000 1781 96.438000 3442 4508 1 chr6A.!!$F1 1066
10 TraesCS2B01G491000 chr2D 572952259 572954351 2092 True 1591.500000 1615 94.463000 999 3325 2 chr2D.!!$R1 2326
11 TraesCS2B01G491000 chr2D 573903363 573905143 1780 False 592.333333 815 88.464667 1192 3243 3 chr2D.!!$F3 2051
12 TraesCS2B01G491000 chr2D 60546609 60547211 602 False 393.000000 532 92.710500 3442 4506 2 chr2D.!!$F2 1064
13 TraesCS2B01G491000 chr2A 155830792 155831874 1082 True 1544.000000 1544 92.759000 3444 4506 1 chr2A.!!$R1 1062
14 TraesCS2B01G491000 chr2A 712187246 712190595 3349 True 770.640000 1567 89.551800 6 3348 5 chr2A.!!$R4 3342
15 TraesCS2B01G491000 chr2A 712344730 712346520 1790 False 591.000000 826 88.143333 1191 3243 3 chr2A.!!$F1 2052
16 TraesCS2B01G491000 chr1A 94506537 94507626 1089 False 1559.000000 1559 92.890000 3441 4506 1 chr1A.!!$F1 1065
17 TraesCS2B01G491000 chr7B 41311930 41312933 1003 False 550.000000 568 90.706500 3438 4506 2 chr7B.!!$F2 1068
18 TraesCS2B01G491000 chr5A 410466436 410467266 830 False 378.500000 470 90.451500 3442 4257 2 chr5A.!!$F3 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.033366 GGTTGGTTCTTTGCGCCAAT 59.967 50.0 4.18 0.0 43.18 3.16 F
756 779 0.105246 ACCAAATGGACCTGCCCAAA 60.105 50.0 6.42 0.0 40.04 3.28 F
1004 1107 0.175760 CACCACACCCTGTCTATCCG 59.824 60.0 0.00 0.0 0.00 4.18 F
2246 2618 0.035820 CGAATTTTGGGACGGAGGGA 60.036 55.0 0.00 0.0 0.00 4.20 F
3360 3745 0.179048 CGATGAAGCAGGCACCCATA 60.179 55.0 0.00 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2062 0.386476 ACGTAGAACCTGCACGTTCA 59.614 50.000 24.37 11.86 45.93 3.18 R
2227 2599 0.035820 TCCCTCCGTCCCAAAATTCG 60.036 55.000 0.00 0.00 0.00 3.34 R
2928 3304 0.389391 AATGGTCGGCGATCTCGATT 59.611 50.000 22.09 9.96 43.02 3.34 R
3429 3814 0.462581 CGCCACTGCACATAGGACAT 60.463 55.000 0.00 0.00 37.32 3.06 R
4170 5131 7.771361 TCAGTGTCCAGTGTTTATAAGAAACAA 59.229 33.333 4.03 0.00 41.23 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 6.779860 TCCTTATTTATCCACTAGGGCAATC 58.220 40.000 0.00 0.00 36.21 2.67
54 55 1.281867 TCCACTAGGGCAATCTGGTTG 59.718 52.381 0.00 0.00 40.90 3.77
55 56 1.683011 CCACTAGGGCAATCTGGTTGG 60.683 57.143 2.39 0.00 38.29 3.77
62 63 2.289010 GGGCAATCTGGTTGGTTCTTTG 60.289 50.000 2.39 0.00 38.29 2.77
65 66 0.598065 ATCTGGTTGGTTCTTTGCGC 59.402 50.000 0.00 0.00 0.00 6.09
69 70 0.033366 GGTTGGTTCTTTGCGCCAAT 59.967 50.000 4.18 0.00 43.18 3.16
70 71 1.418373 GTTGGTTCTTTGCGCCAATC 58.582 50.000 4.18 0.00 43.18 2.67
102 105 5.006386 GGGAGCGATATTGATTCATCCTTT 58.994 41.667 0.00 0.00 0.00 3.11
133 136 4.035017 GGATTTCATAATTGGACGTTGCG 58.965 43.478 0.00 0.00 0.00 4.85
143 146 1.883275 TGGACGTTGCGGAATGAAAAT 59.117 42.857 16.35 0.00 0.00 1.82
144 147 3.075148 TGGACGTTGCGGAATGAAAATA 58.925 40.909 16.35 0.00 0.00 1.40
151 154 5.799936 CGTTGCGGAATGAAAATAATGAAGT 59.200 36.000 2.17 0.00 0.00 3.01
152 155 6.021468 CGTTGCGGAATGAAAATAATGAAGTC 60.021 38.462 2.17 0.00 0.00 3.01
153 156 6.757897 TGCGGAATGAAAATAATGAAGTCT 57.242 33.333 0.00 0.00 0.00 3.24
154 157 7.156876 TGCGGAATGAAAATAATGAAGTCTT 57.843 32.000 0.00 0.00 0.00 3.01
155 158 7.601856 TGCGGAATGAAAATAATGAAGTCTTT 58.398 30.769 0.00 0.00 0.00 2.52
225 233 6.785076 TGATTAATTAACAGGGTTCACTGGA 58.215 36.000 7.01 0.00 42.75 3.86
267 275 7.973048 ATCCAAATACCAACTACTCTCAGTA 57.027 36.000 0.00 0.00 0.00 2.74
271 279 8.692710 CCAAATACCAACTACTCTCAGTATGTA 58.307 37.037 0.00 0.00 37.40 2.29
280 288 5.818678 ACTCTCAGTATGTAACCCACAAA 57.181 39.130 0.00 0.00 41.55 2.83
285 293 7.458397 TCTCAGTATGTAACCCACAAAAAGAT 58.542 34.615 0.00 0.00 41.55 2.40
286 294 7.942341 TCTCAGTATGTAACCCACAAAAAGATT 59.058 33.333 0.00 0.00 41.55 2.40
288 296 9.575868 TCAGTATGTAACCCACAAAAAGATTAA 57.424 29.630 0.00 0.00 41.55 1.40
393 401 9.781834 TGATTTACCTATTCAAAGCAATTTACG 57.218 29.630 0.00 0.00 27.92 3.18
394 402 9.783256 GATTTACCTATTCAAAGCAATTTACGT 57.217 29.630 0.00 0.00 0.00 3.57
395 403 8.958175 TTTACCTATTCAAAGCAATTTACGTG 57.042 30.769 0.00 0.00 0.00 4.49
399 407 4.497473 TTCAAAGCAATTTACGTGAGGG 57.503 40.909 0.00 0.00 0.00 4.30
401 409 4.331968 TCAAAGCAATTTACGTGAGGGAT 58.668 39.130 0.00 0.00 0.00 3.85
405 413 5.310720 AGCAATTTACGTGAGGGATTTTC 57.689 39.130 0.00 0.00 0.00 2.29
417 425 7.176690 ACGTGAGGGATTTTCTTTGACATAATT 59.823 33.333 0.00 0.00 0.00 1.40
460 468 3.671716 CCGCAAAGGGGTTATAGATACC 58.328 50.000 0.00 0.00 35.97 2.73
462 470 3.243975 CGCAAAGGGGTTATAGATACCGT 60.244 47.826 0.00 0.00 36.49 4.83
465 473 5.677567 CAAAGGGGTTATAGATACCGTTGT 58.322 41.667 0.00 0.00 36.42 3.32
467 475 6.661304 AAGGGGTTATAGATACCGTTGTAG 57.339 41.667 0.00 0.00 36.49 2.74
471 479 6.041979 GGGGTTATAGATACCGTTGTAGGAAA 59.958 42.308 0.00 0.00 36.49 3.13
472 480 7.256439 GGGGTTATAGATACCGTTGTAGGAAAT 60.256 40.741 0.00 0.00 36.49 2.17
473 481 8.806146 GGGTTATAGATACCGTTGTAGGAAATA 58.194 37.037 0.00 0.00 36.49 1.40
478 486 9.760077 ATAGATACCGTTGTAGGAAATAAACAG 57.240 33.333 0.00 0.00 34.73 3.16
481 489 4.214758 ACCGTTGTAGGAAATAAACAGCAC 59.785 41.667 0.00 0.00 34.73 4.40
484 492 5.794945 CGTTGTAGGAAATAAACAGCACATG 59.205 40.000 0.00 0.00 0.00 3.21
485 493 5.895636 TGTAGGAAATAAACAGCACATGG 57.104 39.130 0.00 0.00 0.00 3.66
487 495 6.477253 TGTAGGAAATAAACAGCACATGGTA 58.523 36.000 0.00 0.00 0.00 3.25
497 505 9.712305 ATAAACAGCACATGGTAGATATCTTAC 57.288 33.333 11.25 7.10 0.00 2.34
498 506 6.731292 ACAGCACATGGTAGATATCTTACA 57.269 37.500 11.25 10.71 0.00 2.41
499 507 7.308450 ACAGCACATGGTAGATATCTTACAT 57.692 36.000 11.25 12.49 0.00 2.29
500 508 7.157347 ACAGCACATGGTAGATATCTTACATG 58.843 38.462 29.21 29.21 41.00 3.21
514 522 6.808008 ATCTTACATGTGGACTTGTTGAAG 57.192 37.500 9.11 0.00 36.02 3.02
521 529 4.331968 TGTGGACTTGTTGAAGTTGTTCT 58.668 39.130 0.00 0.00 42.80 3.01
564 572 8.675504 AGAAGATATTATGGTACTATTCGACGG 58.324 37.037 0.00 0.00 0.00 4.79
565 573 7.330900 AGATATTATGGTACTATTCGACGGG 57.669 40.000 0.00 0.00 0.00 5.28
567 575 8.049117 AGATATTATGGTACTATTCGACGGGTA 58.951 37.037 0.00 0.00 0.00 3.69
568 576 8.757982 ATATTATGGTACTATTCGACGGGTAT 57.242 34.615 0.00 0.00 0.00 2.73
570 578 5.796424 ATGGTACTATTCGACGGGTATTT 57.204 39.130 0.00 0.00 0.00 1.40
572 580 4.889409 TGGTACTATTCGACGGGTATTTCT 59.111 41.667 0.00 0.00 0.00 2.52
573 581 5.218139 GGTACTATTCGACGGGTATTTCTG 58.782 45.833 0.00 0.00 0.00 3.02
574 582 4.996788 ACTATTCGACGGGTATTTCTGT 57.003 40.909 0.00 0.00 0.00 3.41
575 583 6.017109 GGTACTATTCGACGGGTATTTCTGTA 60.017 42.308 0.00 0.00 0.00 2.74
576 584 6.455360 ACTATTCGACGGGTATTTCTGTAA 57.545 37.500 0.00 0.00 0.00 2.41
577 585 6.501781 ACTATTCGACGGGTATTTCTGTAAG 58.498 40.000 0.00 0.00 0.00 2.34
579 587 4.361451 TCGACGGGTATTTCTGTAAGTC 57.639 45.455 0.00 0.00 33.76 3.01
586 594 7.396418 ACGGGTATTTCTGTAAGTCCAAAATA 58.604 34.615 0.00 0.00 33.76 1.40
588 596 7.012044 CGGGTATTTCTGTAAGTCCAAAATAGG 59.988 40.741 0.00 0.00 33.76 2.57
594 602 7.252612 TCTGTAAGTCCAAAATAGGATGACA 57.747 36.000 0.00 0.00 40.42 3.58
595 603 7.861629 TCTGTAAGTCCAAAATAGGATGACAT 58.138 34.615 0.00 0.00 40.42 3.06
596 604 8.328758 TCTGTAAGTCCAAAATAGGATGACATT 58.671 33.333 0.00 0.00 40.42 2.71
597 605 8.279970 TGTAAGTCCAAAATAGGATGACATTG 57.720 34.615 0.00 0.00 40.42 2.82
598 606 5.841957 AGTCCAAAATAGGATGACATTGC 57.158 39.130 0.00 0.00 40.42 3.56
599 607 4.646492 AGTCCAAAATAGGATGACATTGCC 59.354 41.667 0.00 0.00 40.42 4.52
600 608 4.402155 GTCCAAAATAGGATGACATTGCCA 59.598 41.667 0.00 0.00 40.42 4.92
601 609 5.022122 TCCAAAATAGGATGACATTGCCAA 58.978 37.500 0.00 0.00 31.23 4.52
602 610 5.105392 TCCAAAATAGGATGACATTGCCAAC 60.105 40.000 0.00 0.00 31.23 3.77
606 614 3.665745 AGGATGACATTGCCAACAAAC 57.334 42.857 0.00 0.00 39.77 2.93
607 615 3.233507 AGGATGACATTGCCAACAAACT 58.766 40.909 0.00 0.00 39.77 2.66
608 616 3.006110 AGGATGACATTGCCAACAAACTG 59.994 43.478 0.00 0.00 39.77 3.16
609 617 3.005684 GGATGACATTGCCAACAAACTGA 59.994 43.478 0.00 0.00 39.77 3.41
618 628 6.403866 TTGCCAACAAACTGAAATATGAGT 57.596 33.333 0.00 0.00 31.21 3.41
625 635 8.471457 CAACAAACTGAAATATGAGTTTCAACG 58.529 33.333 0.00 0.00 44.76 4.10
635 645 1.464997 GAGTTTCAACGCTCACCATCC 59.535 52.381 0.00 0.00 0.00 3.51
640 650 0.729116 CAACGCTCACCATCCATCAC 59.271 55.000 0.00 0.00 0.00 3.06
641 651 0.324614 AACGCTCACCATCCATCACA 59.675 50.000 0.00 0.00 0.00 3.58
643 653 0.176449 CGCTCACCATCCATCACAGA 59.824 55.000 0.00 0.00 0.00 3.41
644 654 1.405933 CGCTCACCATCCATCACAGAA 60.406 52.381 0.00 0.00 0.00 3.02
645 655 2.715046 GCTCACCATCCATCACAGAAA 58.285 47.619 0.00 0.00 0.00 2.52
648 658 4.330250 CTCACCATCCATCACAGAAAACT 58.670 43.478 0.00 0.00 0.00 2.66
663 673 7.717436 TCACAGAAAACTTATAACCATCACACA 59.283 33.333 0.00 0.00 0.00 3.72
664 674 7.803189 CACAGAAAACTTATAACCATCACACAC 59.197 37.037 0.00 0.00 0.00 3.82
667 680 3.932822 ACTTATAACCATCACACACGCA 58.067 40.909 0.00 0.00 0.00 5.24
678 691 1.460743 CACACACGCATCGAGAACAAT 59.539 47.619 0.00 0.00 0.00 2.71
680 693 1.726248 CACACGCATCGAGAACAATCA 59.274 47.619 0.00 0.00 0.00 2.57
693 706 5.520376 AGAACAATCAAACCAAGGAACTG 57.480 39.130 0.00 0.00 40.86 3.16
694 707 4.342092 AGAACAATCAAACCAAGGAACTGG 59.658 41.667 0.00 0.00 40.86 4.00
695 708 3.909732 ACAATCAAACCAAGGAACTGGA 58.090 40.909 0.00 0.00 40.86 3.86
697 710 5.640147 ACAATCAAACCAAGGAACTGGATA 58.360 37.500 0.00 0.00 40.86 2.59
698 711 6.256053 ACAATCAAACCAAGGAACTGGATAT 58.744 36.000 0.00 0.00 40.86 1.63
699 712 7.410174 ACAATCAAACCAAGGAACTGGATATA 58.590 34.615 0.00 0.00 40.86 0.86
700 713 8.061304 ACAATCAAACCAAGGAACTGGATATAT 58.939 33.333 0.00 0.00 40.86 0.86
702 715 6.969043 TCAAACCAAGGAACTGGATATATGT 58.031 36.000 0.00 0.00 40.86 2.29
703 716 8.096621 TCAAACCAAGGAACTGGATATATGTA 57.903 34.615 0.00 0.00 40.86 2.29
705 718 9.354673 CAAACCAAGGAACTGGATATATGTAAT 57.645 33.333 0.00 0.00 40.86 1.89
708 721 7.878127 ACCAAGGAACTGGATATATGTAATTCG 59.122 37.037 0.00 0.00 40.86 3.34
709 722 7.148407 CCAAGGAACTGGATATATGTAATTCGC 60.148 40.741 0.00 0.00 40.86 4.70
710 723 6.407202 AGGAACTGGATATATGTAATTCGCC 58.593 40.000 0.00 0.00 37.18 5.54
711 724 6.213600 AGGAACTGGATATATGTAATTCGCCT 59.786 38.462 0.00 0.00 37.18 5.52
716 739 7.936847 ACTGGATATATGTAATTCGCCTGAAAA 59.063 33.333 0.00 0.00 37.71 2.29
718 741 9.952030 TGGATATATGTAATTCGCCTGAAAATA 57.048 29.630 0.00 0.00 37.71 1.40
748 771 2.171003 CCTCCTTTCACCAAATGGACC 58.829 52.381 6.42 0.00 36.53 4.46
750 773 2.821969 CTCCTTTCACCAAATGGACCTG 59.178 50.000 6.42 0.00 36.53 4.00
751 774 1.273327 CCTTTCACCAAATGGACCTGC 59.727 52.381 6.42 0.00 38.94 4.85
752 775 1.273327 CTTTCACCAAATGGACCTGCC 59.727 52.381 6.42 0.00 38.94 4.85
753 776 0.541764 TTCACCAAATGGACCTGCCC 60.542 55.000 6.42 0.00 38.94 5.36
754 777 1.228831 CACCAAATGGACCTGCCCA 60.229 57.895 6.42 0.00 41.05 5.36
755 778 0.831288 CACCAAATGGACCTGCCCAA 60.831 55.000 6.42 0.00 40.04 4.12
756 779 0.105246 ACCAAATGGACCTGCCCAAA 60.105 50.000 6.42 0.00 40.04 3.28
757 780 1.278537 CCAAATGGACCTGCCCAAAT 58.721 50.000 0.00 0.00 40.04 2.32
758 781 1.629861 CCAAATGGACCTGCCCAAATT 59.370 47.619 0.00 0.00 40.04 1.82
759 782 2.836981 CCAAATGGACCTGCCCAAATTA 59.163 45.455 0.00 0.00 40.04 1.40
760 783 3.369366 CCAAATGGACCTGCCCAAATTAC 60.369 47.826 0.00 0.00 40.04 1.89
761 784 2.917713 ATGGACCTGCCCAAATTACA 57.082 45.000 0.00 0.00 40.04 2.41
762 785 2.685106 TGGACCTGCCCAAATTACAA 57.315 45.000 0.00 0.00 34.97 2.41
763 786 2.964209 TGGACCTGCCCAAATTACAAA 58.036 42.857 0.00 0.00 34.97 2.83
764 787 3.515562 TGGACCTGCCCAAATTACAAAT 58.484 40.909 0.00 0.00 34.97 2.32
765 788 3.906846 TGGACCTGCCCAAATTACAAATT 59.093 39.130 0.00 0.00 34.97 1.82
766 789 4.020662 TGGACCTGCCCAAATTACAAATTC 60.021 41.667 0.00 0.00 34.97 2.17
767 790 4.222810 GGACCTGCCCAAATTACAAATTCT 59.777 41.667 0.00 0.00 0.00 2.40
768 791 5.279960 GGACCTGCCCAAATTACAAATTCTT 60.280 40.000 0.00 0.00 0.00 2.52
769 792 6.186420 ACCTGCCCAAATTACAAATTCTTT 57.814 33.333 0.00 0.00 0.00 2.52
771 794 7.059788 ACCTGCCCAAATTACAAATTCTTTTT 58.940 30.769 0.00 0.00 0.00 1.94
790 813 2.373335 TTTTCTTTGCTAGGTGCCCA 57.627 45.000 0.00 0.00 42.00 5.36
791 814 2.373335 TTTCTTTGCTAGGTGCCCAA 57.627 45.000 0.00 0.00 42.00 4.12
792 815 2.373335 TTCTTTGCTAGGTGCCCAAA 57.627 45.000 0.00 0.00 42.00 3.28
793 816 2.603075 TCTTTGCTAGGTGCCCAAAT 57.397 45.000 0.00 0.00 42.00 2.32
794 817 2.888212 TCTTTGCTAGGTGCCCAAATT 58.112 42.857 0.00 0.00 42.00 1.82
795 818 4.040936 TCTTTGCTAGGTGCCCAAATTA 57.959 40.909 0.00 0.00 42.00 1.40
796 819 3.761752 TCTTTGCTAGGTGCCCAAATTAC 59.238 43.478 0.00 0.00 42.00 1.89
797 820 2.889170 TGCTAGGTGCCCAAATTACA 57.111 45.000 0.00 0.00 42.00 2.41
798 821 3.162147 TGCTAGGTGCCCAAATTACAA 57.838 42.857 0.00 0.00 42.00 2.41
799 822 3.707316 TGCTAGGTGCCCAAATTACAAT 58.293 40.909 0.00 0.00 42.00 2.71
800 823 4.861196 TGCTAGGTGCCCAAATTACAATA 58.139 39.130 0.00 0.00 42.00 1.90
801 824 5.454062 TGCTAGGTGCCCAAATTACAATAT 58.546 37.500 0.00 0.00 42.00 1.28
802 825 6.606069 TGCTAGGTGCCCAAATTACAATATA 58.394 36.000 0.00 0.00 42.00 0.86
803 826 7.237982 TGCTAGGTGCCCAAATTACAATATAT 58.762 34.615 0.00 0.00 42.00 0.86
804 827 8.387039 TGCTAGGTGCCCAAATTACAATATATA 58.613 33.333 0.00 0.00 42.00 0.86
805 828 9.408648 GCTAGGTGCCCAAATTACAATATATAT 57.591 33.333 0.00 0.00 35.15 0.86
858 916 7.948357 TGAATCAACTTACATATAGCTACCGT 58.052 34.615 0.00 0.00 0.00 4.83
860 918 5.526115 TCAACTTACATATAGCTACCGTGC 58.474 41.667 0.00 0.00 0.00 5.34
861 919 4.156664 ACTTACATATAGCTACCGTGCG 57.843 45.455 0.00 0.00 38.13 5.34
862 920 3.817084 ACTTACATATAGCTACCGTGCGA 59.183 43.478 0.00 0.00 38.13 5.10
899 997 6.540189 GGTTAGCAAGATCACAGTTCACATAT 59.460 38.462 0.00 0.00 0.00 1.78
904 1002 6.292757 GCAAGATCACAGTTCACATATAGCTG 60.293 42.308 0.00 0.00 0.00 4.24
912 1010 1.754226 TCACATATAGCTGCCGTGTCA 59.246 47.619 0.00 0.00 0.00 3.58
913 1011 2.167487 TCACATATAGCTGCCGTGTCAA 59.833 45.455 0.00 0.00 0.00 3.18
914 1012 2.935849 CACATATAGCTGCCGTGTCAAA 59.064 45.455 0.00 0.00 0.00 2.69
930 1033 1.187715 CAAACGAAACAACGGCTGTG 58.812 50.000 0.00 0.00 38.67 3.66
942 1045 1.375396 GGCTGTGCACGGTACATGA 60.375 57.895 26.00 0.00 0.00 3.07
968 1071 1.060713 CACGCGCACTACATATAGGC 58.939 55.000 5.73 0.00 32.08 3.93
972 1075 1.698165 CGCACTACATATAGGCACGG 58.302 55.000 0.00 0.00 32.08 4.94
983 1086 4.043200 GGCACGGTTGGCTCAAGC 62.043 66.667 6.95 6.95 44.99 4.01
992 1095 0.819259 TTGGCTCAAGCTCACCACAC 60.819 55.000 1.46 0.00 41.70 3.82
994 1097 1.968540 GCTCAAGCTCACCACACCC 60.969 63.158 0.00 0.00 38.21 4.61
996 1099 0.604780 CTCAAGCTCACCACACCCTG 60.605 60.000 0.00 0.00 0.00 4.45
998 1101 0.886490 CAAGCTCACCACACCCTGTC 60.886 60.000 0.00 0.00 0.00 3.51
1000 1103 0.178932 AGCTCACCACACCCTGTCTA 60.179 55.000 0.00 0.00 0.00 2.59
1001 1104 0.905357 GCTCACCACACCCTGTCTAT 59.095 55.000 0.00 0.00 0.00 1.98
1004 1107 0.175760 CACCACACCCTGTCTATCCG 59.824 60.000 0.00 0.00 0.00 4.18
1029 1139 4.410743 GCGGCAGCCAGAAAGCAC 62.411 66.667 13.30 0.00 37.42 4.40
1031 1141 2.960170 GGCAGCCAGAAAGCACAG 59.040 61.111 6.55 0.00 34.23 3.66
1358 1469 4.619227 CCGCCGGACACCAACTGT 62.619 66.667 5.05 0.00 34.96 3.55
1703 2013 1.376466 GCTGAACCTCAAGGAGCCA 59.624 57.895 2.30 0.00 38.94 4.75
1724 2058 2.972505 CTTGTCCCTGCGTGCGTT 60.973 61.111 0.00 0.00 0.00 4.84
1725 2059 2.515057 TTGTCCCTGCGTGCGTTT 60.515 55.556 0.00 0.00 0.00 3.60
1726 2060 2.715864 CTTGTCCCTGCGTGCGTTTG 62.716 60.000 0.00 0.00 0.00 2.93
1727 2061 4.683334 GTCCCTGCGTGCGTTTGC 62.683 66.667 0.00 0.00 43.20 3.68
1728 2062 4.927782 TCCCTGCGTGCGTTTGCT 62.928 61.111 0.00 0.00 43.34 3.91
1729 2063 4.688419 CCCTGCGTGCGTTTGCTG 62.688 66.667 0.00 0.00 43.34 4.41
1730 2064 3.648982 CCTGCGTGCGTTTGCTGA 61.649 61.111 4.03 0.00 43.34 4.26
1868 2232 1.174078 TCTACGCCAACAGGTCGTCA 61.174 55.000 7.13 0.00 36.81 4.35
2014 2378 1.329256 CGCCAGGCCAGTAGTACTAT 58.671 55.000 5.01 0.00 0.00 2.12
2015 2379 2.511659 CGCCAGGCCAGTAGTACTATA 58.488 52.381 5.01 0.00 0.00 1.31
2055 2427 5.750352 AAAATACTACTCCCTTCGTTCCA 57.250 39.130 0.00 0.00 0.00 3.53
2056 2428 5.750352 AAATACTACTCCCTTCGTTCCAA 57.250 39.130 0.00 0.00 0.00 3.53
2057 2429 5.750352 AATACTACTCCCTTCGTTCCAAA 57.250 39.130 0.00 0.00 0.00 3.28
2058 2430 5.750352 ATACTACTCCCTTCGTTCCAAAA 57.250 39.130 0.00 0.00 0.00 2.44
2059 2431 4.635699 ACTACTCCCTTCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
2060 2432 4.981812 ACTACTCCCTTCGTTCCAAAATT 58.018 39.130 0.00 0.00 0.00 1.82
2061 2433 5.382616 ACTACTCCCTTCGTTCCAAAATTT 58.617 37.500 0.00 0.00 0.00 1.82
2062 2434 4.584327 ACTCCCTTCGTTCCAAAATTTG 57.416 40.909 0.00 0.00 0.00 2.32
2063 2435 3.958147 ACTCCCTTCGTTCCAAAATTTGT 59.042 39.130 4.92 0.00 0.00 2.83
2064 2436 4.202111 ACTCCCTTCGTTCCAAAATTTGTG 60.202 41.667 4.92 0.00 0.00 3.33
2065 2437 3.702045 TCCCTTCGTTCCAAAATTTGTGT 59.298 39.130 4.92 0.00 0.00 3.72
2066 2438 4.160626 TCCCTTCGTTCCAAAATTTGTGTT 59.839 37.500 4.92 0.00 0.00 3.32
2067 2439 4.873259 CCCTTCGTTCCAAAATTTGTGTTT 59.127 37.500 4.92 0.00 0.00 2.83
2068 2440 5.352846 CCCTTCGTTCCAAAATTTGTGTTTT 59.647 36.000 4.92 0.00 0.00 2.43
2069 2441 6.535508 CCCTTCGTTCCAAAATTTGTGTTTTA 59.464 34.615 4.92 0.00 30.56 1.52
2070 2442 7.395645 CCTTCGTTCCAAAATTTGTGTTTTAC 58.604 34.615 4.92 0.00 30.56 2.01
2071 2443 7.063544 CCTTCGTTCCAAAATTTGTGTTTTACA 59.936 33.333 4.92 0.00 37.56 2.41
2072 2444 8.480643 TTCGTTCCAAAATTTGTGTTTTACAT 57.519 26.923 4.92 0.00 39.48 2.29
2073 2445 8.480643 TCGTTCCAAAATTTGTGTTTTACATT 57.519 26.923 4.92 0.00 39.48 2.71
2074 2446 8.936864 TCGTTCCAAAATTTGTGTTTTACATTT 58.063 25.926 4.92 0.00 39.48 2.32
2075 2447 8.993856 CGTTCCAAAATTTGTGTTTTACATTTG 58.006 29.630 4.92 0.00 39.48 2.32
2076 2448 9.833182 GTTCCAAAATTTGTGTTTTACATTTGT 57.167 25.926 4.92 0.00 39.48 2.83
2078 2450 9.442047 TCCAAAATTTGTGTTTTACATTTGTCT 57.558 25.926 4.92 0.00 39.48 3.41
2087 2459 9.990360 TGTGTTTTACATTTGTCTAGATACAGA 57.010 29.630 0.00 0.00 33.42 3.41
2121 2493 9.819267 AGCACTAAAACTTAACTAGATACATCC 57.181 33.333 0.00 0.00 0.00 3.51
2122 2494 8.753175 GCACTAAAACTTAACTAGATACATCCG 58.247 37.037 0.00 0.00 0.00 4.18
2123 2495 9.798994 CACTAAAACTTAACTAGATACATCCGT 57.201 33.333 0.00 0.00 0.00 4.69
2131 2503 9.570488 CTTAACTAGATACATCCGTATTTAGGC 57.430 37.037 12.25 0.00 42.81 3.93
2132 2504 7.534723 AACTAGATACATCCGTATTTAGGCA 57.465 36.000 12.25 0.00 42.81 4.75
2133 2505 7.534723 ACTAGATACATCCGTATTTAGGCAA 57.465 36.000 12.25 0.00 42.81 4.52
2134 2506 7.959175 ACTAGATACATCCGTATTTAGGCAAA 58.041 34.615 12.25 0.00 42.81 3.68
2135 2507 8.594550 ACTAGATACATCCGTATTTAGGCAAAT 58.405 33.333 12.25 0.00 42.81 2.32
2148 2520 9.438228 GTATTTAGGCAAATACTCCCTCTATTC 57.562 37.037 17.64 0.00 46.97 1.75
2149 2521 4.608948 AGGCAAATACTCCCTCTATTCG 57.391 45.455 0.00 0.00 0.00 3.34
2150 2522 3.325135 AGGCAAATACTCCCTCTATTCGG 59.675 47.826 0.00 0.00 0.00 4.30
2151 2523 3.323979 GGCAAATACTCCCTCTATTCGGA 59.676 47.826 0.00 0.00 0.00 4.55
2152 2524 4.202326 GGCAAATACTCCCTCTATTCGGAA 60.202 45.833 0.00 0.00 0.00 4.30
2153 2525 5.513267 GGCAAATACTCCCTCTATTCGGAAT 60.513 44.000 8.49 8.49 0.00 3.01
2154 2526 5.998363 GCAAATACTCCCTCTATTCGGAATT 59.002 40.000 8.76 0.00 0.00 2.17
2155 2527 7.159372 GCAAATACTCCCTCTATTCGGAATTA 58.841 38.462 8.76 0.00 0.00 1.40
2156 2528 7.117956 GCAAATACTCCCTCTATTCGGAATTAC 59.882 40.741 8.76 0.00 0.00 1.89
2157 2529 8.368668 CAAATACTCCCTCTATTCGGAATTACT 58.631 37.037 8.76 0.00 0.00 2.24
2158 2530 8.493787 AATACTCCCTCTATTCGGAATTACTT 57.506 34.615 8.76 0.00 0.00 2.24
2159 2531 6.163135 ACTCCCTCTATTCGGAATTACTTG 57.837 41.667 8.76 0.00 0.00 3.16
2160 2532 5.661759 ACTCCCTCTATTCGGAATTACTTGT 59.338 40.000 8.76 0.00 0.00 3.16
2161 2533 6.156429 ACTCCCTCTATTCGGAATTACTTGTT 59.844 38.462 8.76 0.00 0.00 2.83
2162 2534 6.954232 TCCCTCTATTCGGAATTACTTGTTT 58.046 36.000 8.76 0.00 0.00 2.83
2163 2535 7.046033 TCCCTCTATTCGGAATTACTTGTTTC 58.954 38.462 8.76 0.00 0.00 2.78
2164 2536 6.018994 CCCTCTATTCGGAATTACTTGTTTCG 60.019 42.308 8.76 0.00 0.00 3.46
2165 2537 6.755141 CCTCTATTCGGAATTACTTGTTTCGA 59.245 38.462 8.76 0.00 0.00 3.71
2166 2538 7.277098 CCTCTATTCGGAATTACTTGTTTCGAA 59.723 37.037 8.76 4.68 0.00 3.71
2167 2539 8.537049 TCTATTCGGAATTACTTGTTTCGAAA 57.463 30.769 6.47 6.47 0.00 3.46
2168 2540 8.991026 TCTATTCGGAATTACTTGTTTCGAAAA 58.009 29.630 13.10 0.00 0.00 2.29
2169 2541 9.769093 CTATTCGGAATTACTTGTTTCGAAAAT 57.231 29.630 13.10 0.00 0.00 1.82
2170 2542 7.845617 TTCGGAATTACTTGTTTCGAAAATG 57.154 32.000 13.10 8.18 0.00 2.32
2171 2543 7.192148 TCGGAATTACTTGTTTCGAAAATGA 57.808 32.000 13.10 0.63 0.00 2.57
2172 2544 7.640852 TCGGAATTACTTGTTTCGAAAATGAA 58.359 30.769 13.10 5.23 0.00 2.57
2173 2545 8.293867 TCGGAATTACTTGTTTCGAAAATGAAT 58.706 29.630 13.10 5.68 0.00 2.57
2174 2546 8.365210 CGGAATTACTTGTTTCGAAAATGAATG 58.635 33.333 13.10 4.22 0.00 2.67
2175 2547 9.191995 GGAATTACTTGTTTCGAAAATGAATGT 57.808 29.630 13.10 9.35 0.00 2.71
2195 2567 9.784680 TGAATGTATCTAGAACTAAAACTCGTC 57.215 33.333 0.00 0.00 0.00 4.20
2199 2571 9.881649 TGTATCTAGAACTAAAACTCGTCTAGA 57.118 33.333 10.27 10.27 38.94 2.43
2203 2575 9.881649 TCTAGAACTAAAACTCGTCTAGATACA 57.118 33.333 0.00 0.00 32.48 2.29
2206 2578 8.623030 AGAACTAAAACTCGTCTAGATACATCC 58.377 37.037 0.00 0.00 0.00 3.51
2207 2579 7.876936 ACTAAAACTCGTCTAGATACATCCA 57.123 36.000 0.00 0.00 0.00 3.41
2208 2580 8.466617 ACTAAAACTCGTCTAGATACATCCAT 57.533 34.615 0.00 0.00 0.00 3.41
2209 2581 8.915036 ACTAAAACTCGTCTAGATACATCCATT 58.085 33.333 0.00 0.00 0.00 3.16
2210 2582 9.751542 CTAAAACTCGTCTAGATACATCCATTT 57.248 33.333 0.00 0.00 0.00 2.32
2211 2583 8.649973 AAAACTCGTCTAGATACATCCATTTC 57.350 34.615 0.00 0.00 0.00 2.17
2212 2584 7.589958 AACTCGTCTAGATACATCCATTTCT 57.410 36.000 0.00 0.00 0.00 2.52
2213 2585 6.976088 ACTCGTCTAGATACATCCATTTCTG 58.024 40.000 0.00 0.00 0.00 3.02
2214 2586 5.773575 TCGTCTAGATACATCCATTTCTGC 58.226 41.667 0.00 0.00 0.00 4.26
2215 2587 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
2216 2588 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
2217 2589 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
2218 2590 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
2219 2591 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
2220 2592 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
2221 2593 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
2222 2594 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
2223 2595 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
2224 2596 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
2225 2597 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
2226 2598 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
2227 2599 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
2228 2600 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
2229 2601 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
2230 2602 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
2231 2603 3.857052 TCTGCGACAAGTAATTCCGAAT 58.143 40.909 0.00 0.00 0.00 3.34
2232 2604 4.250464 TCTGCGACAAGTAATTCCGAATT 58.750 39.130 11.09 11.09 34.90 2.17
2233 2605 4.693566 TCTGCGACAAGTAATTCCGAATTT 59.306 37.500 11.56 0.00 32.38 1.82
2234 2606 5.180492 TCTGCGACAAGTAATTCCGAATTTT 59.820 36.000 11.56 0.00 32.38 1.82
2235 2607 5.150683 TGCGACAAGTAATTCCGAATTTTG 58.849 37.500 11.56 12.61 32.38 2.44
2236 2608 4.557301 GCGACAAGTAATTCCGAATTTTGG 59.443 41.667 11.56 0.00 32.38 3.28
2237 2609 5.092781 CGACAAGTAATTCCGAATTTTGGG 58.907 41.667 11.56 4.98 32.38 4.12
2238 2610 5.106475 CGACAAGTAATTCCGAATTTTGGGA 60.106 40.000 11.56 0.00 32.93 4.37
2239 2611 6.020971 ACAAGTAATTCCGAATTTTGGGAC 57.979 37.500 11.56 4.00 34.64 4.46
2240 2612 4.957759 AGTAATTCCGAATTTTGGGACG 57.042 40.909 11.56 0.00 34.64 4.79
2241 2613 3.692593 AGTAATTCCGAATTTTGGGACGG 59.307 43.478 11.56 0.00 45.61 4.79
2244 2616 2.477880 CCGAATTTTGGGACGGAGG 58.522 57.895 0.00 0.00 46.94 4.30
2245 2617 1.029947 CCGAATTTTGGGACGGAGGG 61.030 60.000 0.00 0.00 46.94 4.30
2246 2618 0.035820 CGAATTTTGGGACGGAGGGA 60.036 55.000 0.00 0.00 0.00 4.20
2247 2619 1.751437 GAATTTTGGGACGGAGGGAG 58.249 55.000 0.00 0.00 0.00 4.30
2255 2627 0.597072 GGACGGAGGGAGTATTAGCG 59.403 60.000 0.00 0.00 0.00 4.26
2389 2765 1.563111 TTCAAACGCGAAGAAGACGT 58.437 45.000 15.93 0.00 42.81 4.34
2493 2869 2.665000 CACGGCTGGACTGGTGAT 59.335 61.111 0.00 0.00 32.23 3.06
2667 3043 1.144057 CGCCGCCTTCCTGTTCTAT 59.856 57.895 0.00 0.00 0.00 1.98
2679 3055 2.028130 CTGTTCTATGACGAGGAGGCT 58.972 52.381 0.00 0.00 0.00 4.58
2716 3092 2.525629 TCCGGGACTGCCTTGACA 60.526 61.111 0.00 0.00 0.00 3.58
2901 3277 2.184579 CGCCGGGAGAAGGAAGAC 59.815 66.667 2.18 0.00 0.00 3.01
2914 3290 1.324005 GGAAGACGAGGAGGAGGTGG 61.324 65.000 0.00 0.00 0.00 4.61
2928 3304 2.920912 GTGGTGGTCGTGGAGGGA 60.921 66.667 0.00 0.00 0.00 4.20
2976 3352 2.984471 GTTCATCAAGTTCGACGTGCTA 59.016 45.455 0.00 0.00 0.00 3.49
3360 3745 0.179048 CGATGAAGCAGGCACCCATA 60.179 55.000 0.00 0.00 0.00 2.74
3361 3746 1.544093 CGATGAAGCAGGCACCCATAT 60.544 52.381 0.00 0.00 0.00 1.78
3362 3747 2.289631 CGATGAAGCAGGCACCCATATA 60.290 50.000 0.00 0.00 0.00 0.86
3373 3758 2.886081 CACCCATATATGCTCTCTCGC 58.114 52.381 7.24 0.00 0.00 5.03
3402 3787 2.620115 CGCTTGTGGCATGGAATCTATT 59.380 45.455 0.00 0.00 41.91 1.73
3427 3812 4.159693 TGTGTCTCCTCGTATTGTATTGCT 59.840 41.667 0.00 0.00 0.00 3.91
3428 3813 5.109903 GTGTCTCCTCGTATTGTATTGCTT 58.890 41.667 0.00 0.00 0.00 3.91
3429 3814 6.127563 TGTGTCTCCTCGTATTGTATTGCTTA 60.128 38.462 0.00 0.00 0.00 3.09
3430 3815 6.924060 GTGTCTCCTCGTATTGTATTGCTTAT 59.076 38.462 0.00 0.00 0.00 1.73
3431 3816 6.923508 TGTCTCCTCGTATTGTATTGCTTATG 59.076 38.462 0.00 0.00 0.00 1.90
3432 3817 6.924060 GTCTCCTCGTATTGTATTGCTTATGT 59.076 38.462 0.00 0.00 0.00 2.29
3433 3818 7.115095 GTCTCCTCGTATTGTATTGCTTATGTC 59.885 40.741 0.00 0.00 0.00 3.06
3434 3819 6.220930 TCCTCGTATTGTATTGCTTATGTCC 58.779 40.000 0.00 0.00 0.00 4.02
3435 3820 6.041637 TCCTCGTATTGTATTGCTTATGTCCT 59.958 38.462 0.00 0.00 0.00 3.85
3436 3821 7.231925 TCCTCGTATTGTATTGCTTATGTCCTA 59.768 37.037 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 7.824779 GCCCTAGTGGATAAATAAGGAATACAG 59.175 40.741 1.75 0.00 35.39 2.74
40 41 0.779997 AGAACCAACCAGATTGCCCT 59.220 50.000 0.00 0.00 36.93 5.19
48 49 1.007387 GGCGCAAAGAACCAACCAG 60.007 57.895 10.83 0.00 0.00 4.00
54 55 2.061028 CAAAGATTGGCGCAAAGAACC 58.939 47.619 10.83 0.00 0.00 3.62
55 56 2.061028 CCAAAGATTGGCGCAAAGAAC 58.939 47.619 10.83 0.00 45.17 3.01
69 70 0.836606 TATCGCTCCCATGCCAAAGA 59.163 50.000 0.00 0.00 0.00 2.52
70 71 1.901591 ATATCGCTCCCATGCCAAAG 58.098 50.000 0.00 0.00 0.00 2.77
79 80 4.213564 AGGATGAATCAATATCGCTCCC 57.786 45.455 0.00 0.00 0.00 4.30
81 82 7.432350 AGAAAAGGATGAATCAATATCGCTC 57.568 36.000 0.00 0.00 0.00 5.03
102 105 7.148086 CGTCCAATTATGAAATCCTTGGAAGAA 60.148 37.037 9.10 0.00 44.00 2.52
209 217 4.288366 TCAATGATCCAGTGAACCCTGTTA 59.712 41.667 0.00 0.00 35.53 2.41
211 219 2.644299 TCAATGATCCAGTGAACCCTGT 59.356 45.455 0.00 0.00 35.53 4.00
213 221 4.474651 TGTATCAATGATCCAGTGAACCCT 59.525 41.667 0.00 0.00 41.64 4.34
249 257 7.287235 GGGTTACATACTGAGAGTAGTTGGTAT 59.713 40.741 0.00 0.00 33.66 2.73
256 264 6.525578 TTGTGGGTTACATACTGAGAGTAG 57.474 41.667 0.00 0.00 39.48 2.57
260 268 6.833041 TCTTTTTGTGGGTTACATACTGAGA 58.167 36.000 0.00 0.00 39.48 3.27
267 275 9.981114 CTTCTTTAATCTTTTTGTGGGTTACAT 57.019 29.630 0.00 0.00 39.48 2.29
271 279 8.306313 ACTCTTCTTTAATCTTTTTGTGGGTT 57.694 30.769 0.00 0.00 0.00 4.11
280 288 9.586435 CACCAAAACAACTCTTCTTTAATCTTT 57.414 29.630 0.00 0.00 0.00 2.52
285 293 7.887381 TGTTCACCAAAACAACTCTTCTTTAA 58.113 30.769 0.00 0.00 36.25 1.52
286 294 7.455641 TGTTCACCAAAACAACTCTTCTTTA 57.544 32.000 0.00 0.00 36.25 1.85
288 296 5.975693 TGTTCACCAAAACAACTCTTCTT 57.024 34.783 0.00 0.00 36.25 2.52
289 297 5.652014 TGATGTTCACCAAAACAACTCTTCT 59.348 36.000 0.00 0.00 42.10 2.85
290 298 5.890334 TGATGTTCACCAAAACAACTCTTC 58.110 37.500 0.00 0.00 42.10 2.87
370 378 8.784994 TCACGTAAATTGCTTTGAATAGGTAAA 58.215 29.630 0.00 0.00 0.00 2.01
390 398 4.963373 TGTCAAAGAAAATCCCTCACGTA 58.037 39.130 0.00 0.00 0.00 3.57
391 399 3.815809 TGTCAAAGAAAATCCCTCACGT 58.184 40.909 0.00 0.00 0.00 4.49
392 400 6.494893 TTATGTCAAAGAAAATCCCTCACG 57.505 37.500 0.00 0.00 0.00 4.35
439 447 3.671716 GGTATCTATAACCCCTTTGCGG 58.328 50.000 0.00 0.00 0.00 5.69
457 465 5.409214 GTGCTGTTTATTTCCTACAACGGTA 59.591 40.000 0.00 0.00 0.00 4.02
459 467 4.214545 TGTGCTGTTTATTTCCTACAACGG 59.785 41.667 0.00 0.00 0.00 4.44
460 468 5.351233 TGTGCTGTTTATTTCCTACAACG 57.649 39.130 0.00 0.00 0.00 4.10
462 470 5.772672 ACCATGTGCTGTTTATTTCCTACAA 59.227 36.000 0.00 0.00 0.00 2.41
465 473 6.953101 TCTACCATGTGCTGTTTATTTCCTA 58.047 36.000 0.00 0.00 0.00 2.94
467 475 6.699575 ATCTACCATGTGCTGTTTATTTCC 57.300 37.500 0.00 0.00 0.00 3.13
471 479 9.712305 GTAAGATATCTACCATGTGCTGTTTAT 57.288 33.333 5.46 0.00 0.00 1.40
472 480 8.700973 TGTAAGATATCTACCATGTGCTGTTTA 58.299 33.333 5.46 0.00 0.00 2.01
473 481 7.564793 TGTAAGATATCTACCATGTGCTGTTT 58.435 34.615 5.46 0.00 0.00 2.83
474 482 7.124573 TGTAAGATATCTACCATGTGCTGTT 57.875 36.000 5.46 0.00 0.00 3.16
475 483 6.731292 TGTAAGATATCTACCATGTGCTGT 57.269 37.500 5.46 0.00 0.00 4.40
478 486 7.356641 CACATGTAAGATATCTACCATGTGC 57.643 40.000 35.41 17.20 46.24 4.57
481 489 7.901029 AGTCCACATGTAAGATATCTACCATG 58.099 38.462 27.18 27.18 38.80 3.66
484 492 7.727181 ACAAGTCCACATGTAAGATATCTACC 58.273 38.462 5.46 0.10 0.00 3.18
485 493 9.035607 CAACAAGTCCACATGTAAGATATCTAC 57.964 37.037 5.46 5.65 0.00 2.59
487 495 7.851228 TCAACAAGTCCACATGTAAGATATCT 58.149 34.615 0.00 0.00 0.00 1.98
496 504 4.016444 ACAACTTCAACAAGTCCACATGT 58.984 39.130 0.00 0.00 42.45 3.21
497 505 4.637483 ACAACTTCAACAAGTCCACATG 57.363 40.909 0.00 0.00 42.45 3.21
498 506 4.949856 AGAACAACTTCAACAAGTCCACAT 59.050 37.500 0.00 0.00 42.45 3.21
499 507 4.331968 AGAACAACTTCAACAAGTCCACA 58.668 39.130 0.00 0.00 42.45 4.17
500 508 4.965119 AGAACAACTTCAACAAGTCCAC 57.035 40.909 0.00 0.00 42.45 4.02
544 552 8.579850 AATACCCGTCGAATAGTACCATAATA 57.420 34.615 0.00 0.00 0.00 0.98
548 556 5.537674 AGAAATACCCGTCGAATAGTACCAT 59.462 40.000 0.00 0.00 0.00 3.55
551 559 5.825507 ACAGAAATACCCGTCGAATAGTAC 58.174 41.667 0.00 0.00 0.00 2.73
558 566 3.129287 GGACTTACAGAAATACCCGTCGA 59.871 47.826 0.00 0.00 0.00 4.20
562 570 6.753107 ATTTTGGACTTACAGAAATACCCG 57.247 37.500 0.00 0.00 0.00 5.28
563 571 8.050930 TCCTATTTTGGACTTACAGAAATACCC 58.949 37.037 0.00 0.00 0.00 3.69
564 572 9.628500 ATCCTATTTTGGACTTACAGAAATACC 57.372 33.333 0.00 0.00 39.17 2.73
567 575 9.178758 GTCATCCTATTTTGGACTTACAGAAAT 57.821 33.333 0.00 0.00 39.17 2.17
568 576 8.160765 TGTCATCCTATTTTGGACTTACAGAAA 58.839 33.333 0.00 0.00 39.17 2.52
570 578 7.252612 TGTCATCCTATTTTGGACTTACAGA 57.747 36.000 0.00 0.00 39.17 3.41
572 580 7.148086 GCAATGTCATCCTATTTTGGACTTACA 60.148 37.037 0.00 0.00 39.17 2.41
573 581 7.196331 GCAATGTCATCCTATTTTGGACTTAC 58.804 38.462 0.00 0.00 39.17 2.34
574 582 6.321181 GGCAATGTCATCCTATTTTGGACTTA 59.679 38.462 0.00 0.00 39.17 2.24
575 583 5.127682 GGCAATGTCATCCTATTTTGGACTT 59.872 40.000 0.00 0.00 39.17 3.01
576 584 4.646492 GGCAATGTCATCCTATTTTGGACT 59.354 41.667 0.00 0.00 39.17 3.85
577 585 4.402155 TGGCAATGTCATCCTATTTTGGAC 59.598 41.667 0.00 0.00 39.17 4.02
579 587 5.111293 GTTGGCAATGTCATCCTATTTTGG 58.889 41.667 1.92 0.00 0.00 3.28
586 594 3.006110 CAGTTTGTTGGCAATGTCATCCT 59.994 43.478 1.92 0.00 34.18 3.24
588 596 4.241590 TCAGTTTGTTGGCAATGTCATC 57.758 40.909 1.92 0.00 34.18 2.92
594 602 6.996509 ACTCATATTTCAGTTTGTTGGCAAT 58.003 32.000 1.92 0.00 34.18 3.56
595 603 6.403866 ACTCATATTTCAGTTTGTTGGCAA 57.596 33.333 0.00 0.00 0.00 4.52
596 604 6.403866 AACTCATATTTCAGTTTGTTGGCA 57.596 33.333 0.00 0.00 27.81 4.92
597 605 6.922957 TGAAACTCATATTTCAGTTTGTTGGC 59.077 34.615 8.34 0.00 42.32 4.52
598 606 8.755018 GTTGAAACTCATATTTCAGTTTGTTGG 58.245 33.333 8.34 0.00 46.44 3.77
599 607 8.471457 CGTTGAAACTCATATTTCAGTTTGTTG 58.529 33.333 8.34 0.00 46.44 3.33
600 608 7.167468 GCGTTGAAACTCATATTTCAGTTTGTT 59.833 33.333 8.34 0.00 46.44 2.83
601 609 6.636850 GCGTTGAAACTCATATTTCAGTTTGT 59.363 34.615 8.34 0.00 46.44 2.83
602 610 6.857964 AGCGTTGAAACTCATATTTCAGTTTG 59.142 34.615 8.34 0.00 46.44 2.93
606 614 6.017933 GTGAGCGTTGAAACTCATATTTCAG 58.982 40.000 2.95 0.00 46.44 3.02
607 615 5.106712 GGTGAGCGTTGAAACTCATATTTCA 60.107 40.000 2.95 0.00 44.29 2.69
608 616 5.106712 TGGTGAGCGTTGAAACTCATATTTC 60.107 40.000 2.95 0.00 44.29 2.17
609 617 4.759693 TGGTGAGCGTTGAAACTCATATTT 59.240 37.500 2.95 0.00 44.29 1.40
618 628 2.083774 GATGGATGGTGAGCGTTGAAA 58.916 47.619 0.00 0.00 0.00 2.69
625 635 2.408271 TTCTGTGATGGATGGTGAGC 57.592 50.000 0.00 0.00 0.00 4.26
635 645 8.729756 TGTGATGGTTATAAGTTTTCTGTGATG 58.270 33.333 0.00 0.00 0.00 3.07
640 650 7.015289 CGTGTGTGATGGTTATAAGTTTTCTG 58.985 38.462 0.00 0.00 0.00 3.02
641 651 6.348213 GCGTGTGTGATGGTTATAAGTTTTCT 60.348 38.462 0.00 0.00 0.00 2.52
643 653 5.239744 TGCGTGTGTGATGGTTATAAGTTTT 59.760 36.000 0.00 0.00 0.00 2.43
644 654 4.757657 TGCGTGTGTGATGGTTATAAGTTT 59.242 37.500 0.00 0.00 0.00 2.66
645 655 4.320023 TGCGTGTGTGATGGTTATAAGTT 58.680 39.130 0.00 0.00 0.00 2.66
648 658 3.553917 CGATGCGTGTGTGATGGTTATAA 59.446 43.478 0.00 0.00 0.00 0.98
663 673 2.159627 GGTTTGATTGTTCTCGATGCGT 59.840 45.455 0.00 0.00 0.00 5.24
664 674 2.159430 TGGTTTGATTGTTCTCGATGCG 59.841 45.455 0.00 0.00 0.00 4.73
667 680 4.651778 TCCTTGGTTTGATTGTTCTCGAT 58.348 39.130 0.00 0.00 0.00 3.59
678 691 6.969043 ACATATATCCAGTTCCTTGGTTTGA 58.031 36.000 0.00 0.00 39.35 2.69
680 693 9.936329 AATTACATATATCCAGTTCCTTGGTTT 57.064 29.630 0.00 0.00 39.35 3.27
703 716 9.476202 GGCTAAAAATATATTTTCAGGCGAATT 57.524 29.630 24.21 10.19 39.68 2.17
708 721 8.183104 AGGAGGCTAAAAATATATTTTCAGGC 57.817 34.615 28.26 28.26 45.71 4.85
716 739 9.487442 TTTGGTGAAAGGAGGCTAAAAATATAT 57.513 29.630 0.00 0.00 0.00 0.86
718 741 7.790782 TTTGGTGAAAGGAGGCTAAAAATAT 57.209 32.000 0.00 0.00 0.00 1.28
725 748 2.647299 TCCATTTGGTGAAAGGAGGCTA 59.353 45.455 0.00 0.00 36.34 3.93
739 762 3.260380 TGTAATTTGGGCAGGTCCATTTG 59.740 43.478 0.00 0.00 36.58 2.32
806 829 5.148502 TGTAATTTGGGCTACCCTCAAAAA 58.851 37.500 3.93 0.00 45.70 1.94
807 830 4.742012 TGTAATTTGGGCTACCCTCAAAA 58.258 39.130 3.93 0.00 45.70 2.44
808 831 4.390129 TGTAATTTGGGCTACCCTCAAA 57.610 40.909 3.93 0.00 45.70 2.69
809 832 4.390129 TTGTAATTTGGGCTACCCTCAA 57.610 40.909 3.93 0.00 45.70 3.02
810 833 4.390129 TTTGTAATTTGGGCTACCCTCA 57.610 40.909 3.93 0.00 45.70 3.86
811 834 5.420739 TCAATTTGTAATTTGGGCTACCCTC 59.579 40.000 3.93 0.00 45.70 4.30
812 835 5.337788 TCAATTTGTAATTTGGGCTACCCT 58.662 37.500 3.93 0.00 45.70 4.34
813 836 5.669164 TCAATTTGTAATTTGGGCTACCC 57.331 39.130 0.00 0.00 45.71 3.69
814 837 7.327214 TGATTCAATTTGTAATTTGGGCTACC 58.673 34.615 0.00 0.00 37.24 3.18
815 838 8.655970 GTTGATTCAATTTGTAATTTGGGCTAC 58.344 33.333 1.78 0.00 0.00 3.58
816 839 8.592809 AGTTGATTCAATTTGTAATTTGGGCTA 58.407 29.630 1.78 0.00 0.00 3.93
817 840 7.452562 AGTTGATTCAATTTGTAATTTGGGCT 58.547 30.769 1.78 0.00 0.00 5.19
832 855 8.418662 ACGGTAGCTATATGTAAGTTGATTCAA 58.581 33.333 0.00 0.00 0.00 2.69
834 857 7.148787 GCACGGTAGCTATATGTAAGTTGATTC 60.149 40.741 0.00 0.00 0.00 2.52
851 909 2.817834 TGCCATTCGCACGGTAGC 60.818 61.111 0.00 0.00 44.64 3.58
860 918 2.877786 TGCTAACCATATGTGCCATTCG 59.122 45.455 1.24 0.00 0.00 3.34
861 919 4.580167 TCTTGCTAACCATATGTGCCATTC 59.420 41.667 1.24 0.00 0.00 2.67
862 920 4.535781 TCTTGCTAACCATATGTGCCATT 58.464 39.130 1.24 0.00 0.00 3.16
899 997 3.945436 CGTTTGACACGGCAGCTA 58.055 55.556 0.00 0.00 45.89 3.32
912 1010 0.524604 GCACAGCCGTTGTTTCGTTT 60.525 50.000 0.00 0.00 38.16 3.60
913 1011 1.063488 GCACAGCCGTTGTTTCGTT 59.937 52.632 0.00 0.00 38.16 3.85
914 1012 2.109739 TGCACAGCCGTTGTTTCGT 61.110 52.632 0.00 0.00 38.16 3.85
916 1014 1.654137 CGTGCACAGCCGTTGTTTC 60.654 57.895 18.64 0.00 38.16 2.78
919 1017 3.448533 TACCGTGCACAGCCGTTGT 62.449 57.895 18.64 4.33 41.94 3.32
968 1071 1.597854 TGAGCTTGAGCCAACCGTG 60.598 57.895 0.00 0.00 43.38 4.94
972 1075 0.819259 TGTGGTGAGCTTGAGCCAAC 60.819 55.000 0.00 1.38 43.38 3.77
981 1084 0.178932 TAGACAGGGTGTGGTGAGCT 60.179 55.000 0.00 0.00 0.00 4.09
983 1086 1.482593 GGATAGACAGGGTGTGGTGAG 59.517 57.143 0.00 0.00 0.00 3.51
992 1095 3.867723 CGCTTACGGATAGACAGGG 57.132 57.895 0.00 0.00 34.97 4.45
1029 1139 2.513204 CTCCATGCTGCCGGTCTG 60.513 66.667 1.90 0.50 0.00 3.51
1031 1141 2.202987 CTCTCCATGCTGCCGGTC 60.203 66.667 1.90 0.00 0.00 4.79
1377 1488 1.153745 GCTCGAAGTCGGTGATGCT 60.154 57.895 0.11 0.00 40.29 3.79
1703 2013 1.672356 GCACGCAGGGACAAGTGAT 60.672 57.895 0.00 0.00 36.79 3.06
1724 2058 0.463654 AGAACCTGCACGTTCAGCAA 60.464 50.000 24.37 0.00 43.82 3.91
1725 2059 0.391228 TAGAACCTGCACGTTCAGCA 59.609 50.000 24.37 4.18 43.82 4.41
1726 2060 0.790814 GTAGAACCTGCACGTTCAGC 59.209 55.000 24.37 15.18 43.82 4.26
1727 2061 1.060713 CGTAGAACCTGCACGTTCAG 58.939 55.000 24.37 8.34 43.82 3.02
1728 2062 0.386476 ACGTAGAACCTGCACGTTCA 59.614 50.000 24.37 11.86 45.93 3.18
1729 2063 3.190337 ACGTAGAACCTGCACGTTC 57.810 52.632 17.67 17.67 45.93 3.95
1772 2136 1.805945 GTCGTCGCCGATGAGCTTT 60.806 57.895 9.68 0.00 46.30 3.51
1868 2232 1.814586 CCTCTCGTCGTAGAGCGGT 60.815 63.158 13.17 0.00 41.48 5.68
2040 2412 5.009210 CACAAATTTTGGAACGAAGGGAGTA 59.991 40.000 13.42 0.00 34.12 2.59
2042 2414 4.202111 ACACAAATTTTGGAACGAAGGGAG 60.202 41.667 13.42 0.00 34.12 4.30
2044 2416 4.053469 ACACAAATTTTGGAACGAAGGG 57.947 40.909 13.42 0.00 34.12 3.95
2045 2417 6.415798 AAAACACAAATTTTGGAACGAAGG 57.584 33.333 13.42 0.00 30.56 3.46
2046 2418 7.954447 TGTAAAACACAAATTTTGGAACGAAG 58.046 30.769 13.42 0.00 32.95 3.79
2047 2419 7.884816 TGTAAAACACAAATTTTGGAACGAA 57.115 28.000 13.42 0.00 32.95 3.85
2048 2420 8.480643 AATGTAAAACACAAATTTTGGAACGA 57.519 26.923 13.42 0.00 41.55 3.85
2049 2421 8.993856 CAAATGTAAAACACAAATTTTGGAACG 58.006 29.630 13.42 2.18 41.55 3.95
2050 2422 9.833182 ACAAATGTAAAACACAAATTTTGGAAC 57.167 25.926 13.42 3.40 41.55 3.62
2052 2424 9.442047 AGACAAATGTAAAACACAAATTTTGGA 57.558 25.926 13.42 0.00 41.55 3.53
2061 2433 9.990360 TCTGTATCTAGACAAATGTAAAACACA 57.010 29.630 0.00 0.00 42.69 3.72
2095 2467 9.819267 GGATGTATCTAGTTAAGTTTTAGTGCT 57.181 33.333 0.00 0.00 0.00 4.40
2096 2468 8.753175 CGGATGTATCTAGTTAAGTTTTAGTGC 58.247 37.037 0.00 0.00 0.00 4.40
2097 2469 9.798994 ACGGATGTATCTAGTTAAGTTTTAGTG 57.201 33.333 0.00 0.00 0.00 2.74
2105 2477 9.570488 GCCTAAATACGGATGTATCTAGTTAAG 57.430 37.037 0.00 0.00 40.42 1.85
2106 2478 9.081204 TGCCTAAATACGGATGTATCTAGTTAA 57.919 33.333 0.00 0.00 40.42 2.01
2107 2479 8.640063 TGCCTAAATACGGATGTATCTAGTTA 57.360 34.615 0.00 0.00 40.42 2.24
2108 2480 7.534723 TGCCTAAATACGGATGTATCTAGTT 57.465 36.000 0.00 0.00 40.42 2.24
2109 2481 7.534723 TTGCCTAAATACGGATGTATCTAGT 57.465 36.000 0.00 0.00 40.42 2.57
2111 2483 9.865321 GTATTTGCCTAAATACGGATGTATCTA 57.135 33.333 7.04 0.00 44.94 1.98
2112 2484 8.773404 GTATTTGCCTAAATACGGATGTATCT 57.227 34.615 7.04 0.00 44.94 1.98
2129 2501 3.323979 TCCGAATAGAGGGAGTATTTGCC 59.676 47.826 0.00 0.00 37.61 4.52
2130 2502 4.602340 TCCGAATAGAGGGAGTATTTGC 57.398 45.455 0.00 0.00 0.00 3.68
2131 2503 8.368668 AGTAATTCCGAATAGAGGGAGTATTTG 58.631 37.037 0.00 0.00 33.01 2.32
2132 2504 8.493787 AGTAATTCCGAATAGAGGGAGTATTT 57.506 34.615 0.00 0.00 33.01 1.40
2133 2505 8.368668 CAAGTAATTCCGAATAGAGGGAGTATT 58.631 37.037 0.00 0.00 33.01 1.89
2134 2506 7.509659 ACAAGTAATTCCGAATAGAGGGAGTAT 59.490 37.037 0.00 0.00 33.01 2.12
2135 2507 6.837568 ACAAGTAATTCCGAATAGAGGGAGTA 59.162 38.462 0.00 0.00 33.01 2.59
2136 2508 5.661759 ACAAGTAATTCCGAATAGAGGGAGT 59.338 40.000 0.00 0.00 33.01 3.85
2137 2509 6.163135 ACAAGTAATTCCGAATAGAGGGAG 57.837 41.667 0.00 0.00 33.01 4.30
2138 2510 6.555463 AACAAGTAATTCCGAATAGAGGGA 57.445 37.500 0.00 0.00 0.00 4.20
2139 2511 6.018994 CGAAACAAGTAATTCCGAATAGAGGG 60.019 42.308 0.00 0.00 0.00 4.30
2140 2512 6.755141 TCGAAACAAGTAATTCCGAATAGAGG 59.245 38.462 0.00 0.00 0.00 3.69
2141 2513 7.751047 TCGAAACAAGTAATTCCGAATAGAG 57.249 36.000 0.00 0.00 0.00 2.43
2142 2514 8.537049 TTTCGAAACAAGTAATTCCGAATAGA 57.463 30.769 6.47 0.00 0.00 1.98
2143 2515 9.769093 ATTTTCGAAACAAGTAATTCCGAATAG 57.231 29.630 10.79 0.00 0.00 1.73
2144 2516 9.549509 CATTTTCGAAACAAGTAATTCCGAATA 57.450 29.630 10.79 0.00 0.00 1.75
2145 2517 8.293867 TCATTTTCGAAACAAGTAATTCCGAAT 58.706 29.630 10.79 0.00 0.00 3.34
2146 2518 7.640852 TCATTTTCGAAACAAGTAATTCCGAA 58.359 30.769 10.79 0.00 0.00 4.30
2147 2519 7.192148 TCATTTTCGAAACAAGTAATTCCGA 57.808 32.000 10.79 0.00 0.00 4.55
2148 2520 7.845617 TTCATTTTCGAAACAAGTAATTCCG 57.154 32.000 10.79 0.00 0.00 4.30
2149 2521 9.191995 ACATTCATTTTCGAAACAAGTAATTCC 57.808 29.630 10.79 0.00 0.00 3.01
2169 2541 9.784680 GACGAGTTTTAGTTCTAGATACATTCA 57.215 33.333 0.00 0.00 0.00 2.57
2173 2545 9.881649 TCTAGACGAGTTTTAGTTCTAGATACA 57.118 33.333 0.00 0.00 32.48 2.29
2177 2549 9.881649 TGTATCTAGACGAGTTTTAGTTCTAGA 57.118 33.333 8.64 8.64 38.94 2.43
2180 2552 8.623030 GGATGTATCTAGACGAGTTTTAGTTCT 58.377 37.037 0.00 0.00 0.00 3.01
2181 2553 8.404000 TGGATGTATCTAGACGAGTTTTAGTTC 58.596 37.037 0.00 0.00 0.00 3.01
2182 2554 8.289939 TGGATGTATCTAGACGAGTTTTAGTT 57.710 34.615 0.00 0.00 0.00 2.24
2183 2555 7.876936 TGGATGTATCTAGACGAGTTTTAGT 57.123 36.000 0.00 0.00 0.00 2.24
2184 2556 9.751542 AAATGGATGTATCTAGACGAGTTTTAG 57.248 33.333 0.00 0.00 0.00 1.85
2185 2557 9.745880 GAAATGGATGTATCTAGACGAGTTTTA 57.254 33.333 0.00 0.00 0.00 1.52
2186 2558 8.478877 AGAAATGGATGTATCTAGACGAGTTTT 58.521 33.333 0.00 0.00 0.00 2.43
2187 2559 7.923344 CAGAAATGGATGTATCTAGACGAGTTT 59.077 37.037 0.00 0.00 0.00 2.66
2188 2560 7.429633 CAGAAATGGATGTATCTAGACGAGTT 58.570 38.462 0.00 0.00 0.00 3.01
2189 2561 6.515862 GCAGAAATGGATGTATCTAGACGAGT 60.516 42.308 0.00 0.00 0.00 4.18
2190 2562 5.861251 GCAGAAATGGATGTATCTAGACGAG 59.139 44.000 0.00 0.00 0.00 4.18
2191 2563 5.562890 CGCAGAAATGGATGTATCTAGACGA 60.563 44.000 0.00 0.00 0.00 4.20
2192 2564 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
2193 2565 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
2194 2566 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
2195 2567 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
2196 2568 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
2197 2569 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
2198 2570 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
2199 2571 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
2200 2572 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
2201 2573 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
2202 2574 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
2203 2575 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
2204 2576 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
2205 2577 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
2206 2578 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
2207 2579 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2208 2580 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2209 2581 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2210 2582 3.306917 TTCGGAATTACTTGTCGCAGA 57.693 42.857 0.00 0.00 0.00 4.26
2211 2583 4.600012 AATTCGGAATTACTTGTCGCAG 57.400 40.909 14.05 0.00 0.00 5.18
2212 2584 5.150683 CAAAATTCGGAATTACTTGTCGCA 58.849 37.500 15.80 0.00 0.00 5.10
2213 2585 4.557301 CCAAAATTCGGAATTACTTGTCGC 59.443 41.667 15.80 0.00 0.00 5.19
2214 2586 5.092781 CCCAAAATTCGGAATTACTTGTCG 58.907 41.667 15.80 6.98 0.00 4.35
2215 2587 6.090783 GTCCCAAAATTCGGAATTACTTGTC 58.909 40.000 15.80 7.44 0.00 3.18
2216 2588 5.335348 CGTCCCAAAATTCGGAATTACTTGT 60.335 40.000 15.80 0.00 0.00 3.16
2217 2589 5.092781 CGTCCCAAAATTCGGAATTACTTG 58.907 41.667 15.80 15.87 0.00 3.16
2218 2590 4.157105 CCGTCCCAAAATTCGGAATTACTT 59.843 41.667 15.80 5.60 44.86 2.24
2219 2591 3.692593 CCGTCCCAAAATTCGGAATTACT 59.307 43.478 15.80 4.55 44.86 2.24
2220 2592 3.690628 TCCGTCCCAAAATTCGGAATTAC 59.309 43.478 15.80 9.27 46.96 1.89
2221 2593 3.952931 TCCGTCCCAAAATTCGGAATTA 58.047 40.909 15.80 0.00 46.96 1.40
2222 2594 2.797786 TCCGTCCCAAAATTCGGAATT 58.202 42.857 10.11 10.11 46.96 2.17
2223 2595 2.500392 TCCGTCCCAAAATTCGGAAT 57.500 45.000 1.53 0.00 46.96 3.01
2226 2598 1.029947 CCCTCCGTCCCAAAATTCGG 61.030 60.000 0.00 0.00 43.65 4.30
2227 2599 0.035820 TCCCTCCGTCCCAAAATTCG 60.036 55.000 0.00 0.00 0.00 3.34
2228 2600 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2229 2601 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2230 2602 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2231 2603 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2232 2604 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2233 2605 2.674420 CTAATACTCCCTCCGTCCCAA 58.326 52.381 0.00 0.00 0.00 4.12
2234 2606 1.756690 GCTAATACTCCCTCCGTCCCA 60.757 57.143 0.00 0.00 0.00 4.37
2235 2607 0.967662 GCTAATACTCCCTCCGTCCC 59.032 60.000 0.00 0.00 0.00 4.46
2236 2608 0.597072 CGCTAATACTCCCTCCGTCC 59.403 60.000 0.00 0.00 0.00 4.79
2237 2609 1.266446 GTCGCTAATACTCCCTCCGTC 59.734 57.143 0.00 0.00 0.00 4.79
2238 2610 1.133853 AGTCGCTAATACTCCCTCCGT 60.134 52.381 0.00 0.00 0.00 4.69
2239 2611 1.606903 AGTCGCTAATACTCCCTCCG 58.393 55.000 0.00 0.00 0.00 4.63
2240 2612 2.957006 TGAAGTCGCTAATACTCCCTCC 59.043 50.000 0.00 0.00 0.00 4.30
2241 2613 4.650754 TTGAAGTCGCTAATACTCCCTC 57.349 45.455 0.00 0.00 0.00 4.30
2242 2614 5.416271 TTTTGAAGTCGCTAATACTCCCT 57.584 39.130 0.00 0.00 0.00 4.20
2243 2615 6.679327 ATTTTTGAAGTCGCTAATACTCCC 57.321 37.500 0.00 0.00 0.00 4.30
2244 2616 9.651718 CAATATTTTTGAAGTCGCTAATACTCC 57.348 33.333 0.00 0.00 0.00 3.85
2339 2715 7.107834 TGATGTGTACGTACATTTGTGTTAC 57.892 36.000 29.58 14.61 41.15 2.50
2490 2866 1.377202 GTTCGGCTGCCTTGGATCA 60.377 57.895 17.92 0.00 0.00 2.92
2493 2869 4.697756 CCGTTCGGCTGCCTTGGA 62.698 66.667 17.92 3.67 0.00 3.53
2661 3037 2.785713 GAGCCTCCTCGTCATAGAAC 57.214 55.000 0.00 0.00 0.00 3.01
2736 3112 2.283388 AGGCCGACGTCCTGGTAA 60.283 61.111 10.58 0.00 31.53 2.85
2805 3181 2.122144 AGGGTACTGGTGGTGGCA 60.122 61.111 0.00 0.00 0.00 4.92
2815 3191 2.285442 GGTGGCAGGGAGGGTACT 60.285 66.667 0.00 0.00 0.00 2.73
2856 3232 4.954118 ACCCTGGGCCTCGTCACA 62.954 66.667 14.08 0.00 0.00 3.58
2898 3274 1.304547 CACCACCTCCTCCTCGTCT 60.305 63.158 0.00 0.00 0.00 4.18
2901 3277 2.283966 ACCACCACCTCCTCCTCG 60.284 66.667 0.00 0.00 0.00 4.63
2914 3290 1.153628 CGATTCCCTCCACGACCAC 60.154 63.158 0.00 0.00 0.00 4.16
2928 3304 0.389391 AATGGTCGGCGATCTCGATT 59.611 50.000 22.09 9.96 43.02 3.34
2976 3352 3.382832 CCCTCGGGCTCGTTCACT 61.383 66.667 5.57 0.00 37.69 3.41
3274 3654 7.453752 ACCATTACATAGATTCTATACCACGGT 59.546 37.037 5.88 7.82 0.00 4.83
3360 3745 2.653702 GCCGGCGAGAGAGCATAT 59.346 61.111 12.58 0.00 39.27 1.78
3361 3746 3.966104 CGCCGGCGAGAGAGCATA 61.966 66.667 44.86 0.00 42.83 3.14
3383 3768 4.400251 ACACAATAGATTCCATGCCACAAG 59.600 41.667 0.00 0.00 0.00 3.16
3390 3775 5.678583 AGGAGACACACAATAGATTCCATG 58.321 41.667 0.00 0.00 0.00 3.66
3402 3787 5.407502 CAATACAATACGAGGAGACACACA 58.592 41.667 0.00 0.00 0.00 3.72
3427 3812 2.741553 CGCCACTGCACATAGGACATAA 60.742 50.000 0.00 0.00 37.32 1.90
3428 3813 1.202521 CGCCACTGCACATAGGACATA 60.203 52.381 0.00 0.00 37.32 2.29
3429 3814 0.462581 CGCCACTGCACATAGGACAT 60.463 55.000 0.00 0.00 37.32 3.06
3430 3815 1.079197 CGCCACTGCACATAGGACA 60.079 57.895 0.00 0.00 37.32 4.02
3431 3816 1.815421 CCGCCACTGCACATAGGAC 60.815 63.158 0.00 0.00 37.32 3.85
3432 3817 1.960040 CTCCGCCACTGCACATAGGA 61.960 60.000 0.00 0.00 37.32 2.94
3433 3818 1.522355 CTCCGCCACTGCACATAGG 60.522 63.158 0.00 0.00 37.32 2.57
3434 3819 2.176273 GCTCCGCCACTGCACATAG 61.176 63.158 0.00 0.00 37.32 2.23
3435 3820 2.125147 GCTCCGCCACTGCACATA 60.125 61.111 0.00 0.00 37.32 2.29
3436 3821 3.557903 AAGCTCCGCCACTGCACAT 62.558 57.895 0.00 0.00 37.32 3.21
3794 4673 9.362539 GTTACATTCGAAGGTATTGAGTTCTTA 57.637 33.333 21.89 1.92 0.00 2.10
4170 5131 7.771361 TCAGTGTCCAGTGTTTATAAGAAACAA 59.229 33.333 4.03 0.00 41.23 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.