Multiple sequence alignment - TraesCS2B01G489600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G489600 chr2B 100.000 6125 0 0 1 6125 686839510 686833386 0.000000e+00 11311.0
1 TraesCS2B01G489600 chr2B 86.316 570 49 14 1 561 644604452 644605001 1.470000e-165 593.0
2 TraesCS2B01G489600 chr2B 88.571 280 29 3 285 561 687201293 687201572 2.740000e-88 337.0
3 TraesCS2B01G489600 chr2A 92.716 3089 154 32 624 3672 711079678 711076621 0.000000e+00 4392.0
4 TraesCS2B01G489600 chr2A 93.355 1249 44 13 4315 5546 711076138 711074912 0.000000e+00 1810.0
5 TraesCS2B01G489600 chr2A 83.419 585 78 15 1 568 497421516 497420934 5.440000e-145 525.0
6 TraesCS2B01G489600 chr2A 85.885 503 32 15 5627 6125 711074912 711074445 3.300000e-137 499.0
7 TraesCS2B01G489600 chr2A 91.057 369 19 5 3849 4208 711076512 711076149 2.570000e-133 486.0
8 TraesCS2B01G489600 chr2A 95.200 125 6 0 3692 3816 711076632 711076508 1.350000e-46 198.0
9 TraesCS2B01G489600 chr2A 92.308 52 1 1 4206 4257 674016094 674016046 3.060000e-08 71.3
10 TraesCS2B01G489600 chr2D 92.983 1867 93 16 1831 3672 572082927 572081074 0.000000e+00 2687.0
11 TraesCS2B01G489600 chr2D 93.814 1261 35 21 4305 5546 572080608 572079372 0.000000e+00 1857.0
12 TraesCS2B01G489600 chr2D 90.584 1232 73 22 577 1794 572084134 572082932 0.000000e+00 1592.0
13 TraesCS2B01G489600 chr2D 86.282 503 25 11 5627 6125 572079372 572078910 1.970000e-139 507.0
14 TraesCS2B01G489600 chr2D 92.212 321 20 4 3894 4212 572080917 572080600 3.370000e-122 449.0
15 TraesCS2B01G489600 chr2D 94.400 125 7 0 3692 3816 572081085 572080961 6.270000e-45 193.0
16 TraesCS2B01G489600 chr3D 85.986 578 61 10 1 561 53620836 53620262 8.780000e-168 601.0
17 TraesCS2B01G489600 chr3D 95.506 89 3 1 5540 5628 602851938 602851851 2.300000e-29 141.0
18 TraesCS2B01G489600 chr5B 86.837 547 58 11 1 536 247250413 247250956 3.160000e-167 599.0
19 TraesCS2B01G489600 chr5B 84.351 524 66 9 1 518 615384377 615384890 3.300000e-137 499.0
20 TraesCS2B01G489600 chr5D 85.432 556 57 18 1 536 223962724 223962173 1.930000e-154 556.0
21 TraesCS2B01G489600 chr5D 95.506 89 3 1 5540 5628 528297196 528297283 2.300000e-29 141.0
22 TraesCS2B01G489600 chr4D 84.429 578 74 12 1 565 370067581 370068155 6.940000e-154 555.0
23 TraesCS2B01G489600 chr4D 95.506 89 3 1 5540 5628 398048344 398048257 2.300000e-29 141.0
24 TraesCS2B01G489600 chr1B 81.636 550 64 20 1 518 242669612 242669068 7.340000e-114 422.0
25 TraesCS2B01G489600 chr3A 82.143 504 67 17 1 483 455778274 455778775 1.590000e-110 411.0
26 TraesCS2B01G489600 chr3A 94.444 36 2 0 2002 2037 70697966 70697931 8.580000e-04 56.5
27 TraesCS2B01G489600 chrUn 80.435 552 70 20 1 518 101400879 101400332 2.680000e-103 387.0
28 TraesCS2B01G489600 chrUn 95.506 89 3 1 5540 5628 45086433 45086520 2.300000e-29 141.0
29 TraesCS2B01G489600 chrUn 95.506 89 3 1 5540 5628 171036720 171036807 2.300000e-29 141.0
30 TraesCS2B01G489600 chr6B 79.330 537 87 13 1 518 599698352 599697821 7.550000e-94 355.0
31 TraesCS2B01G489600 chr6B 92.857 42 3 0 4210 4251 454749985 454750026 1.840000e-05 62.1
32 TraesCS2B01G489600 chr6B 92.857 42 3 0 4210 4251 454752630 454752671 1.840000e-05 62.1
33 TraesCS2B01G489600 chr6B 92.857 42 3 0 4210 4251 454755191 454755232 1.840000e-05 62.1
34 TraesCS2B01G489600 chr7D 89.437 142 13 2 577 718 547257009 547257148 1.750000e-40 178.0
35 TraesCS2B01G489600 chr4A 82.297 209 32 5 355 561 645443568 645443363 6.310000e-40 176.0
36 TraesCS2B01G489600 chr4A 82.297 209 32 5 355 561 645495869 645495664 6.310000e-40 176.0
37 TraesCS2B01G489600 chr6D 95.506 89 3 1 5540 5628 425953201 425953288 2.300000e-29 141.0
38 TraesCS2B01G489600 chr6D 95.745 47 2 0 4205 4251 292299059 292299105 6.580000e-10 76.8
39 TraesCS2B01G489600 chr6A 95.506 89 3 1 5540 5628 413557848 413557935 2.300000e-29 141.0
40 TraesCS2B01G489600 chr6A 95.506 89 3 1 5540 5628 561397935 561397848 2.300000e-29 141.0
41 TraesCS2B01G489600 chr1A 95.506 89 3 1 5540 5628 94751368 94751455 2.300000e-29 141.0
42 TraesCS2B01G489600 chr1A 90.476 63 6 0 4207 4269 2945671 2945609 3.930000e-12 84.2
43 TraesCS2B01G489600 chr1A 100.000 36 0 0 4212 4247 432208807 432208772 3.960000e-07 67.6
44 TraesCS2B01G489600 chr1A 91.111 45 4 0 4205 4249 30128501 30128457 1.840000e-05 62.1
45 TraesCS2B01G489600 chr7B 100.000 33 0 0 4259 4291 660336591 660336623 1.840000e-05 62.1
46 TraesCS2B01G489600 chr1D 91.111 45 4 0 4205 4249 30074578 30074534 1.840000e-05 62.1
47 TraesCS2B01G489600 chr5A 100.000 28 0 0 2010 2037 589001854 589001881 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G489600 chr2B 686833386 686839510 6124 True 11311.000000 11311 100.0000 1 6125 1 chr2B.!!$R1 6124
1 TraesCS2B01G489600 chr2B 644604452 644605001 549 False 593.000000 593 86.3160 1 561 1 chr2B.!!$F1 560
2 TraesCS2B01G489600 chr2A 711074445 711079678 5233 True 1477.000000 4392 91.6426 624 6125 5 chr2A.!!$R3 5501
3 TraesCS2B01G489600 chr2A 497420934 497421516 582 True 525.000000 525 83.4190 1 568 1 chr2A.!!$R1 567
4 TraesCS2B01G489600 chr2D 572078910 572084134 5224 True 1214.166667 2687 91.7125 577 6125 6 chr2D.!!$R1 5548
5 TraesCS2B01G489600 chr3D 53620262 53620836 574 True 601.000000 601 85.9860 1 561 1 chr3D.!!$R1 560
6 TraesCS2B01G489600 chr5B 247250413 247250956 543 False 599.000000 599 86.8370 1 536 1 chr5B.!!$F1 535
7 TraesCS2B01G489600 chr5B 615384377 615384890 513 False 499.000000 499 84.3510 1 518 1 chr5B.!!$F2 517
8 TraesCS2B01G489600 chr5D 223962173 223962724 551 True 556.000000 556 85.4320 1 536 1 chr5D.!!$R1 535
9 TraesCS2B01G489600 chr4D 370067581 370068155 574 False 555.000000 555 84.4290 1 565 1 chr4D.!!$F1 564
10 TraesCS2B01G489600 chr1B 242669068 242669612 544 True 422.000000 422 81.6360 1 518 1 chr1B.!!$R1 517
11 TraesCS2B01G489600 chr3A 455778274 455778775 501 False 411.000000 411 82.1430 1 483 1 chr3A.!!$F1 482
12 TraesCS2B01G489600 chrUn 101400332 101400879 547 True 387.000000 387 80.4350 1 518 1 chrUn.!!$R1 517
13 TraesCS2B01G489600 chr6B 599697821 599698352 531 True 355.000000 355 79.3300 1 518 1 chr6B.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 703 0.034863 GCAACGGGGGAAGTTATGGA 60.035 55.000 0.0 0.0 0.00 3.41 F
1265 1384 1.135527 TCGGGCTGTAGTTATCAACGG 59.864 52.381 0.0 0.0 36.23 4.44 F
2461 2608 0.183014 AGATCAGCAGCATTGAGGGG 59.817 55.000 0.0 0.0 0.00 4.79 F
2474 2621 0.904865 TGAGGGGGACACTGTAGCTG 60.905 60.000 0.0 0.0 0.00 4.24 F
3083 3237 1.207329 GAACGGCTATCCTCCAGTTGT 59.793 52.381 0.0 0.0 0.00 3.32 F
3225 3379 2.273449 CCTTGGCTCGCCATTCCT 59.727 61.111 12.0 0.0 46.64 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1698 1.016130 AAGCCGAATCGTGCACTCTG 61.016 55.000 16.19 3.49 0.00 3.35 R
3225 3379 0.037326 GACACATCTTGTCGCCCTGA 60.037 55.000 0.00 0.00 45.33 3.86 R
3433 3587 0.326264 AGGGACTCCAATGTCTGTGC 59.674 55.000 0.00 0.00 37.16 4.57 R
3896 4050 2.803030 AAGATCTTGGTGAGCATGCT 57.197 45.000 22.92 22.92 32.67 3.79 R
4659 4830 0.178944 TCCTGTCGTCTTCCAAGGGA 60.179 55.000 0.00 0.00 0.00 4.20 R
5133 5304 1.201181 GCAAGGAACACACACAACACA 59.799 47.619 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.393990 ACATATCGAGTACAGAACGTGTCA 59.606 41.667 0.00 0.00 40.94 3.58
77 78 2.261361 CGAGGCATGGTCGTCACA 59.739 61.111 0.00 0.00 32.62 3.58
107 108 2.885861 GAGAGGGACGTCACGCAT 59.114 61.111 23.75 8.26 0.00 4.73
163 164 0.169230 GTCTGACGACGAGCTCATGT 59.831 55.000 15.40 8.40 0.00 3.21
252 269 0.037447 GCAAGAAGCAGGGGAGAAGT 59.963 55.000 0.00 0.00 44.79 3.01
283 319 3.319198 GCTCGGTTGGACCAGGGA 61.319 66.667 0.00 0.00 38.47 4.20
332 401 8.352942 GGATCTATTAATAACTGGCAGTTTTGG 58.647 37.037 35.13 18.43 39.51 3.28
468 556 1.996291 TGGACCATATGTGACCCCAAA 59.004 47.619 1.24 0.00 0.00 3.28
510 605 4.620589 TTCGGGTATTTGTAACCACAGA 57.379 40.909 0.00 0.00 38.87 3.41
518 613 7.662669 GGGTATTTGTAACCACAGAGACTAAAA 59.337 37.037 0.00 0.00 38.87 1.52
553 648 5.238583 GCAAGTTGTAGGTCTTGTAGTGAT 58.761 41.667 4.48 0.00 41.83 3.06
589 684 1.983972 AAGACGAGTTGCTCTAAGCG 58.016 50.000 0.00 0.00 46.26 4.68
606 701 1.988834 GCGCAACGGGGGAAGTTATG 61.989 60.000 0.30 0.00 0.00 1.90
608 703 0.034863 GCAACGGGGGAAGTTATGGA 60.035 55.000 0.00 0.00 0.00 3.41
616 711 3.977326 GGGGGAAGTTATGGATCTCTTCT 59.023 47.826 0.00 0.00 37.18 2.85
618 713 5.372373 GGGGAAGTTATGGATCTCTTCTTG 58.628 45.833 0.00 0.00 37.18 3.02
653 748 9.691362 ATTTTATTTATTTTCTCGTGCACAACT 57.309 25.926 18.64 0.16 0.00 3.16
658 753 5.949233 ATTTTCTCGTGCACAACTTTTTC 57.051 34.783 18.64 0.00 0.00 2.29
681 777 8.611035 TTTCTTAATGAATTCTGGTGCACACCT 61.611 37.037 20.43 0.00 42.12 4.00
732 828 2.129555 TTTGGACAGAGGAGCCCTGC 62.130 60.000 0.00 0.00 31.76 4.85
1172 1291 4.431131 CCCTTGGCCCGATGCTGT 62.431 66.667 0.00 0.00 40.92 4.40
1173 1292 2.825836 CCTTGGCCCGATGCTGTC 60.826 66.667 0.00 0.00 40.92 3.51
1230 1349 8.690840 GTTTCTCCTGTTTATTTCGTTTGATTG 58.309 33.333 0.00 0.00 0.00 2.67
1264 1383 2.460918 CTCGGGCTGTAGTTATCAACG 58.539 52.381 0.00 0.00 36.23 4.10
1265 1384 1.135527 TCGGGCTGTAGTTATCAACGG 59.864 52.381 0.00 0.00 36.23 4.44
1266 1385 1.296727 GGGCTGTAGTTATCAACGGC 58.703 55.000 0.00 0.00 45.38 5.68
1269 1388 2.618053 GCTGTAGTTATCAACGGCAGT 58.382 47.619 13.32 0.00 45.42 4.40
1270 1389 3.000727 GCTGTAGTTATCAACGGCAGTT 58.999 45.455 0.00 0.00 45.42 3.16
1271 1390 4.178540 GCTGTAGTTATCAACGGCAGTTA 58.821 43.478 0.75 0.00 45.42 2.24
1272 1391 4.809426 GCTGTAGTTATCAACGGCAGTTAT 59.191 41.667 0.75 0.06 45.42 1.89
1273 1392 5.050972 GCTGTAGTTATCAACGGCAGTTATC 60.051 44.000 0.75 0.00 45.42 1.75
1274 1393 5.968254 TGTAGTTATCAACGGCAGTTATCA 58.032 37.500 0.75 0.00 38.79 2.15
1275 1394 6.399743 TGTAGTTATCAACGGCAGTTATCAA 58.600 36.000 0.75 0.00 38.79 2.57
1276 1395 5.796350 AGTTATCAACGGCAGTTATCAAC 57.204 39.130 0.75 6.65 38.79 3.18
1287 1410 4.141914 GGCAGTTATCAACACCTAGCTAGT 60.142 45.833 19.31 5.12 0.00 2.57
1301 1424 6.933521 CACCTAGCTAGTGCAAATAAGATGAT 59.066 38.462 19.31 0.00 42.74 2.45
1303 1426 8.820831 ACCTAGCTAGTGCAAATAAGATGATAT 58.179 33.333 19.31 0.00 42.74 1.63
1319 1442 8.884124 AAGATGATATGGGTTCTCTTTTTCAA 57.116 30.769 0.00 0.00 0.00 2.69
1323 1446 7.657336 TGATATGGGTTCTCTTTTTCAACAAC 58.343 34.615 0.00 0.00 0.00 3.32
1332 1455 7.083875 TCTCTTTTTCAACAACGATTCTGTT 57.916 32.000 0.00 0.00 37.49 3.16
1423 1546 4.937620 GCGATGATATTGGTGGTATGTGAT 59.062 41.667 0.00 0.00 0.00 3.06
1438 1561 4.685169 ATGTGATTGGCTTGTTCTAACG 57.315 40.909 0.00 0.00 0.00 3.18
1453 1576 5.810587 TGTTCTAACGTGAAATAGCATCTCC 59.189 40.000 0.00 0.00 0.00 3.71
1462 1585 6.093495 CGTGAAATAGCATCTCCCTTGTTTAA 59.907 38.462 0.00 0.00 0.00 1.52
1491 1614 4.513442 TGATTGGTCCATTTAGAGTTCGG 58.487 43.478 0.00 0.00 0.00 4.30
1507 1630 5.099042 AGTTCGGGCTGTATTTATCAACT 57.901 39.130 0.00 0.00 0.00 3.16
1512 1635 4.211374 CGGGCTGTATTTATCAACTGCTAC 59.789 45.833 0.00 0.00 39.62 3.58
1535 1658 2.037251 GCAAATAGGACGAGATGGGCTA 59.963 50.000 0.00 0.00 0.00 3.93
1537 1660 4.081642 GCAAATAGGACGAGATGGGCTATA 60.082 45.833 0.00 0.00 0.00 1.31
1541 1664 6.875972 ATAGGACGAGATGGGCTATATTTT 57.124 37.500 0.00 0.00 0.00 1.82
1726 1853 6.377429 TGTTCCTTCGTGTCTGTCTATCTTAT 59.623 38.462 0.00 0.00 0.00 1.73
1761 1888 5.808366 ATGTAGACTCCAAAGTTGACTCA 57.192 39.130 0.00 0.00 35.28 3.41
1762 1889 5.201713 TGTAGACTCCAAAGTTGACTCAG 57.798 43.478 0.00 0.00 35.28 3.35
1813 1940 7.710044 TGTCACGAAACTGTAAGGTGTATTTTA 59.290 33.333 0.00 0.00 39.30 1.52
1905 2032 8.311120 GGTTTATGCAAAATAAAGTCGAAATCG 58.689 33.333 0.00 0.00 41.45 3.34
1913 2040 9.685005 CAAAATAAAGTCGAAATCGTAGGTAAG 57.315 33.333 2.41 0.00 40.80 2.34
2055 2191 9.994432 GAGTAACATGTTTTTCTTCTATGGATG 57.006 33.333 17.78 0.00 0.00 3.51
2131 2277 4.916983 TCTCTTGTGTTGTGAATTTGGG 57.083 40.909 0.00 0.00 0.00 4.12
2138 2284 4.041723 GTGTTGTGAATTTGGGAAGTTCG 58.958 43.478 0.00 0.00 0.00 3.95
2249 2395 3.178865 CAGGTTGTAGGGGAGGAGTTAA 58.821 50.000 0.00 0.00 0.00 2.01
2461 2608 0.183014 AGATCAGCAGCATTGAGGGG 59.817 55.000 0.00 0.00 0.00 4.79
2474 2621 0.904865 TGAGGGGGACACTGTAGCTG 60.905 60.000 0.00 0.00 0.00 4.24
2740 2887 4.751767 TTTCCTTGATGCAAAAACTGGT 57.248 36.364 0.00 0.00 0.00 4.00
2785 2932 6.299141 AGTTGAGTTTGTGAGTGAATATGGT 58.701 36.000 0.00 0.00 0.00 3.55
2809 2956 7.388224 GGTATAGAAGCTTATCCTTTTACAGCC 59.612 40.741 0.00 0.00 0.00 4.85
2860 3007 3.567478 AAGGCTGCTAAGGATAACCAG 57.433 47.619 0.00 0.00 38.94 4.00
2880 3027 5.980698 CAGACTATTCATAGTGTGCTTGG 57.019 43.478 10.30 0.00 44.26 3.61
3083 3237 1.207329 GAACGGCTATCCTCCAGTTGT 59.793 52.381 0.00 0.00 0.00 3.32
3225 3379 2.273449 CCTTGGCTCGCCATTCCT 59.727 61.111 12.00 0.00 46.64 3.36
3288 3442 5.126222 TGAGCTTAGTGATCTTCCTACACTG 59.874 44.000 0.00 0.00 43.33 3.66
3294 3448 2.497675 TGATCTTCCTACACTGGTGCTC 59.502 50.000 0.17 0.00 0.00 4.26
3351 3505 4.811555 TGCGGACATAATTAATGAGCAC 57.188 40.909 0.00 0.00 38.26 4.40
3468 3622 2.572104 GTCCCTTCTGGTTACTGGTGAT 59.428 50.000 0.00 0.00 34.77 3.06
3469 3623 3.773119 GTCCCTTCTGGTTACTGGTGATA 59.227 47.826 0.00 0.00 34.77 2.15
3506 3660 3.633986 GGGAAAGATGGAGCAAAGGTATG 59.366 47.826 0.00 0.00 0.00 2.39
3521 3675 9.799106 AGCAAAGGTATGTCTTATATATGCTTT 57.201 29.630 0.00 0.00 34.23 3.51
3560 3714 7.856145 AGAGACTATTTGTTGGCAAGAATAG 57.144 36.000 26.19 26.19 35.82 1.73
3603 3757 8.791327 TTGAAGTGTCTTAGAATATTGCATCA 57.209 30.769 0.00 0.00 0.00 3.07
3607 3761 7.215789 AGTGTCTTAGAATATTGCATCAGAGG 58.784 38.462 0.00 0.00 0.00 3.69
3616 3770 9.638176 AGAATATTGCATCAGAGGAAATTAACT 57.362 29.630 0.00 0.00 0.00 2.24
3637 3791 6.992063 ACTATGTTGATCTGAATGTTGACC 57.008 37.500 0.00 0.00 0.00 4.02
3653 3807 4.809958 TGTTGACCTTCATGCACAATTTTG 59.190 37.500 0.00 0.00 0.00 2.44
3660 3814 6.265196 ACCTTCATGCACAATTTTGAAGAGTA 59.735 34.615 21.48 0.00 44.97 2.59
3661 3815 6.805271 CCTTCATGCACAATTTTGAAGAGTAG 59.195 38.462 21.48 6.20 44.97 2.57
3662 3816 7.308770 CCTTCATGCACAATTTTGAAGAGTAGA 60.309 37.037 21.48 0.00 44.97 2.59
3663 3817 7.509141 TCATGCACAATTTTGAAGAGTAGAA 57.491 32.000 0.00 0.00 0.00 2.10
3664 3818 7.939782 TCATGCACAATTTTGAAGAGTAGAAA 58.060 30.769 0.00 0.00 0.00 2.52
3665 3819 8.579006 TCATGCACAATTTTGAAGAGTAGAAAT 58.421 29.630 0.00 0.00 0.00 2.17
3666 3820 9.844790 CATGCACAATTTTGAAGAGTAGAAATA 57.155 29.630 0.00 0.00 0.00 1.40
3669 3823 9.508567 GCACAATTTTGAAGAGTAGAAATATCC 57.491 33.333 0.00 0.00 0.00 2.59
3707 3861 6.224665 TGAGGGCAGAAATATCCAATTTTG 57.775 37.500 0.00 0.00 0.00 2.44
3771 3925 4.341806 TGCCTGGCCATCTTATTTATGTTG 59.658 41.667 17.53 0.00 0.00 3.33
3790 3944 5.549347 TGTTGCGGTTTGTATTAGGTAGAA 58.451 37.500 0.00 0.00 0.00 2.10
3796 3950 9.228949 TGCGGTTTGTATTAGGTAGAAATTTAA 57.771 29.630 0.00 0.00 29.53 1.52
3814 3968 9.533253 GAAATTTAAACCCTCCATATCATGTTG 57.467 33.333 0.00 0.00 0.00 3.33
3815 3969 8.837099 AATTTAAACCCTCCATATCATGTTGA 57.163 30.769 0.00 0.00 0.00 3.18
3816 3970 8.837099 ATTTAAACCCTCCATATCATGTTGAA 57.163 30.769 0.00 0.00 0.00 2.69
3817 3971 8.837099 TTTAAACCCTCCATATCATGTTGAAT 57.163 30.769 0.00 0.00 0.00 2.57
3818 3972 8.837099 TTAAACCCTCCATATCATGTTGAATT 57.163 30.769 0.00 0.00 0.00 2.17
3819 3973 6.966534 AACCCTCCATATCATGTTGAATTC 57.033 37.500 0.00 0.00 0.00 2.17
3820 3974 5.065914 ACCCTCCATATCATGTTGAATTCG 58.934 41.667 0.04 0.00 0.00 3.34
3821 3975 5.065914 CCCTCCATATCATGTTGAATTCGT 58.934 41.667 0.04 0.00 0.00 3.85
3822 3976 5.049198 CCCTCCATATCATGTTGAATTCGTG 60.049 44.000 0.04 0.00 0.00 4.35
3823 3977 5.759763 CCTCCATATCATGTTGAATTCGTGA 59.240 40.000 0.04 3.37 35.69 4.35
3824 3978 6.429078 CCTCCATATCATGTTGAATTCGTGAT 59.571 38.462 15.24 15.24 42.09 3.06
3825 3979 7.603784 CCTCCATATCATGTTGAATTCGTGATA 59.396 37.037 17.42 17.42 43.36 2.15
3826 3980 8.900983 TCCATATCATGTTGAATTCGTGATAA 57.099 30.769 18.31 7.29 42.85 1.75
3827 3981 9.336171 TCCATATCATGTTGAATTCGTGATAAA 57.664 29.630 18.31 10.07 42.85 1.40
3828 3982 9.385902 CCATATCATGTTGAATTCGTGATAAAC 57.614 33.333 18.31 10.26 42.85 2.01
3829 3983 9.934190 CATATCATGTTGAATTCGTGATAAACA 57.066 29.630 18.31 14.17 42.85 2.83
3832 3986 8.894409 TCATGTTGAATTCGTGATAAACATTC 57.106 30.769 13.84 0.00 34.99 2.67
3833 3987 8.729756 TCATGTTGAATTCGTGATAAACATTCT 58.270 29.630 13.84 0.00 34.99 2.40
3834 3988 9.003112 CATGTTGAATTCGTGATAAACATTCTC 57.997 33.333 13.84 0.00 34.99 2.87
3835 3989 8.093659 TGTTGAATTCGTGATAAACATTCTCA 57.906 30.769 0.04 0.00 0.00 3.27
3836 3990 8.729756 TGTTGAATTCGTGATAAACATTCTCAT 58.270 29.630 0.04 0.00 0.00 2.90
3837 3991 9.214953 GTTGAATTCGTGATAAACATTCTCATC 57.785 33.333 0.04 0.00 0.00 2.92
3838 3992 8.722480 TGAATTCGTGATAAACATTCTCATCT 57.278 30.769 0.04 0.00 0.00 2.90
3839 3993 8.820933 TGAATTCGTGATAAACATTCTCATCTC 58.179 33.333 0.04 0.00 0.00 2.75
3840 3994 8.954950 AATTCGTGATAAACATTCTCATCTCT 57.045 30.769 0.00 0.00 0.00 3.10
3841 3995 7.993821 TTCGTGATAAACATTCTCATCTCTC 57.006 36.000 0.00 0.00 0.00 3.20
3842 3996 7.340122 TCGTGATAAACATTCTCATCTCTCT 57.660 36.000 0.00 0.00 0.00 3.10
3843 3997 8.451908 TCGTGATAAACATTCTCATCTCTCTA 57.548 34.615 0.00 0.00 0.00 2.43
3844 3998 8.346300 TCGTGATAAACATTCTCATCTCTCTAC 58.654 37.037 0.00 0.00 0.00 2.59
3845 3999 8.349245 CGTGATAAACATTCTCATCTCTCTACT 58.651 37.037 0.00 0.00 0.00 2.57
3848 4002 8.885494 ATAAACATTCTCATCTCTCTACTTGC 57.115 34.615 0.00 0.00 0.00 4.01
3849 4003 6.543430 AACATTCTCATCTCTCTACTTGCT 57.457 37.500 0.00 0.00 0.00 3.91
3850 4004 6.543430 ACATTCTCATCTCTCTACTTGCTT 57.457 37.500 0.00 0.00 0.00 3.91
3851 4005 6.339730 ACATTCTCATCTCTCTACTTGCTTG 58.660 40.000 0.00 0.00 0.00 4.01
3856 4010 4.528206 TCATCTCTCTACTTGCTTGGACAA 59.472 41.667 0.00 0.00 0.00 3.18
3866 4020 8.946085 TCTACTTGCTTGGACAACTTATTTATG 58.054 33.333 0.00 0.00 0.00 1.90
3887 4041 4.610333 TGTCAAGAGCTCTATTAGGTGGA 58.390 43.478 18.59 2.25 35.60 4.02
3888 4042 4.646945 TGTCAAGAGCTCTATTAGGTGGAG 59.353 45.833 18.59 0.00 38.39 3.86
3891 4045 6.717540 GTCAAGAGCTCTATTAGGTGGAGATA 59.282 42.308 18.59 0.00 37.62 1.98
3893 4047 7.613801 TCAAGAGCTCTATTAGGTGGAGATATC 59.386 40.741 18.59 0.00 37.62 1.63
3894 4048 7.038531 AGAGCTCTATTAGGTGGAGATATCA 57.961 40.000 16.50 0.00 37.62 2.15
3895 4049 7.651607 AGAGCTCTATTAGGTGGAGATATCAT 58.348 38.462 16.50 0.00 37.62 2.45
3896 4050 8.786838 AGAGCTCTATTAGGTGGAGATATCATA 58.213 37.037 16.50 0.00 37.62 2.15
3897 4051 8.995027 AGCTCTATTAGGTGGAGATATCATAG 57.005 38.462 5.32 1.34 37.62 2.23
3956 4118 8.117988 GCACTACAAAATTGAATGCATATTTGG 58.882 33.333 18.05 13.06 35.73 3.28
4003 4165 6.742109 AGTTTGTTCATCTCAATTTGTCCAG 58.258 36.000 0.00 0.00 0.00 3.86
4025 4187 9.748708 TCCAGAAAAGTTGAAAAACAATCATAG 57.251 29.630 0.00 0.00 40.76 2.23
4134 4297 6.312918 GTGTAGGAACGCAGAAATTAGAATGA 59.687 38.462 0.00 0.00 36.10 2.57
4178 4341 5.252863 TCCAGGAACAAAGGGAATGATAGAA 59.747 40.000 0.00 0.00 0.00 2.10
4216 4379 7.828712 GGTAGCCTAAATGTATACTACCTCTG 58.171 42.308 11.72 0.00 44.03 3.35
4217 4380 7.450944 GGTAGCCTAAATGTATACTACCTCTGT 59.549 40.741 11.72 0.00 44.03 3.41
4218 4381 9.512588 GTAGCCTAAATGTATACTACCTCTGTA 57.487 37.037 4.17 0.00 0.00 2.74
4220 4383 9.603189 AGCCTAAATGTATACTACCTCTGTATT 57.397 33.333 4.17 0.00 33.32 1.89
4247 4410 8.728088 AAATATAAGACGTTTTTGCAGTTCAG 57.272 30.769 0.00 0.00 0.00 3.02
4248 4411 5.751243 ATAAGACGTTTTTGCAGTTCAGT 57.249 34.783 0.00 0.00 0.00 3.41
4249 4412 4.434713 AAGACGTTTTTGCAGTTCAGTT 57.565 36.364 0.00 0.00 0.00 3.16
4250 4413 4.434713 AGACGTTTTTGCAGTTCAGTTT 57.565 36.364 0.00 0.00 0.00 2.66
4251 4414 4.165779 AGACGTTTTTGCAGTTCAGTTTG 58.834 39.130 0.00 0.00 0.00 2.93
4252 4415 4.083003 AGACGTTTTTGCAGTTCAGTTTGA 60.083 37.500 0.00 0.00 0.00 2.69
4253 4416 4.551388 ACGTTTTTGCAGTTCAGTTTGAA 58.449 34.783 0.00 0.00 33.32 2.69
4282 4445 9.487790 ACAAAAACATCTTGTATTTTGGTATGG 57.512 29.630 19.72 6.35 39.60 2.74
4283 4446 9.703892 CAAAAACATCTTGTATTTTGGTATGGA 57.296 29.630 13.86 0.00 36.24 3.41
4284 4447 9.927668 AAAAACATCTTGTATTTTGGTATGGAG 57.072 29.630 0.00 0.00 0.00 3.86
4285 4448 7.645058 AACATCTTGTATTTTGGTATGGAGG 57.355 36.000 0.00 0.00 0.00 4.30
4286 4449 6.129179 ACATCTTGTATTTTGGTATGGAGGG 58.871 40.000 0.00 0.00 0.00 4.30
4287 4450 6.069088 ACATCTTGTATTTTGGTATGGAGGGA 60.069 38.462 0.00 0.00 0.00 4.20
4288 4451 6.001449 TCTTGTATTTTGGTATGGAGGGAG 57.999 41.667 0.00 0.00 0.00 4.30
4289 4452 5.491078 TCTTGTATTTTGGTATGGAGGGAGT 59.509 40.000 0.00 0.00 0.00 3.85
4301 4464 8.351414 TGGTATGGAGGGAGTATGATATATTGA 58.649 37.037 0.00 0.00 0.00 2.57
4302 4465 9.386122 GGTATGGAGGGAGTATGATATATTGAT 57.614 37.037 0.00 0.00 0.00 2.57
4396 4567 7.891183 GTGTTCTACACTTCTGATGTGTTAT 57.109 36.000 27.37 11.16 45.11 1.89
4397 4568 7.954447 GTGTTCTACACTTCTGATGTGTTATC 58.046 38.462 27.37 17.38 45.11 1.75
4400 4571 9.856488 GTTCTACACTTCTGATGTGTTATCTAA 57.144 33.333 27.37 15.11 45.11 2.10
4402 4573 9.462606 TCTACACTTCTGATGTGTTATCTAAGA 57.537 33.333 27.37 20.72 45.11 2.10
4405 4576 9.376075 ACACTTCTGATGTGTTATCTAAGATTG 57.624 33.333 19.92 0.00 45.11 2.67
4406 4577 9.376075 CACTTCTGATGTGTTATCTAAGATTGT 57.624 33.333 13.78 0.00 0.00 2.71
4407 4578 9.376075 ACTTCTGATGTGTTATCTAAGATTGTG 57.624 33.333 0.00 0.00 0.00 3.33
4408 4579 9.591792 CTTCTGATGTGTTATCTAAGATTGTGA 57.408 33.333 0.00 0.00 0.00 3.58
4558 4729 5.163561 ACACTTGTGGATGTTTACAACAAGG 60.164 40.000 21.04 15.20 45.86 3.61
4659 4830 4.802051 ATGCCATGGCTCGCCGTT 62.802 61.111 35.53 10.26 42.51 4.44
4674 4845 0.669625 CCGTTCCCTTGGAAGACGAC 60.670 60.000 8.52 0.00 42.88 4.34
5040 5211 2.628290 GGGTGAGGAGAAGAAGGGAGAT 60.628 54.545 0.00 0.00 0.00 2.75
5055 5226 1.064463 GGAGATGAGGTGAATGGGCAA 60.064 52.381 0.00 0.00 0.00 4.52
5058 5229 2.512896 AGATGAGGTGAATGGGCAAGAT 59.487 45.455 0.00 0.00 0.00 2.40
5059 5230 2.133281 TGAGGTGAATGGGCAAGATG 57.867 50.000 0.00 0.00 0.00 2.90
5060 5231 0.743097 GAGGTGAATGGGCAAGATGC 59.257 55.000 0.00 0.00 44.08 3.91
5062 5233 0.458669 GGTGAATGGGCAAGATGCTG 59.541 55.000 2.00 0.00 44.28 4.41
5063 5234 0.179119 GTGAATGGGCAAGATGCTGC 60.179 55.000 2.00 0.00 44.28 5.25
5064 5235 0.323999 TGAATGGGCAAGATGCTGCT 60.324 50.000 0.00 0.00 44.28 4.24
5065 5236 0.102481 GAATGGGCAAGATGCTGCTG 59.898 55.000 0.00 0.00 44.28 4.41
5066 5237 1.956629 AATGGGCAAGATGCTGCTGC 61.957 55.000 8.89 8.89 44.28 5.25
5067 5238 2.754658 GGGCAAGATGCTGCTGCT 60.755 61.111 17.00 2.26 44.28 4.24
5068 5239 2.490217 GGCAAGATGCTGCTGCTG 59.510 61.111 17.00 7.59 44.28 4.41
5069 5240 2.044555 GGCAAGATGCTGCTGCTGA 61.045 57.895 17.00 0.00 44.28 4.26
5070 5241 1.429825 GCAAGATGCTGCTGCTGAG 59.570 57.895 17.00 0.00 40.96 3.35
5133 5304 0.540454 GGAAGGCCTAGGTAGCGTTT 59.460 55.000 5.16 0.00 38.36 3.60
5220 5392 5.695851 AATAAATCTTGCATCCGATGGTC 57.304 39.130 10.41 0.00 0.00 4.02
5222 5394 3.287867 AATCTTGCATCCGATGGTCTT 57.712 42.857 10.41 0.00 0.00 3.01
5224 5396 1.019673 CTTGCATCCGATGGTCTTGG 58.980 55.000 10.41 0.00 0.00 3.61
5225 5397 0.394216 TTGCATCCGATGGTCTTGGG 60.394 55.000 10.41 0.00 0.00 4.12
5226 5398 1.271127 TGCATCCGATGGTCTTGGGA 61.271 55.000 10.41 0.00 0.00 4.37
5229 5401 0.326618 ATCCGATGGTCTTGGGAGGT 60.327 55.000 0.00 0.00 30.92 3.85
5231 5403 1.062428 TCCGATGGTCTTGGGAGGTAT 60.062 52.381 0.00 0.00 0.00 2.73
5232 5404 1.768870 CCGATGGTCTTGGGAGGTATT 59.231 52.381 0.00 0.00 0.00 1.89
5236 5408 5.247564 CCGATGGTCTTGGGAGGTATTTATA 59.752 44.000 0.00 0.00 0.00 0.98
5238 5410 7.125204 CCGATGGTCTTGGGAGGTATTTATATA 59.875 40.741 0.00 0.00 0.00 0.86
5241 5413 8.388656 TGGTCTTGGGAGGTATTTATATATCC 57.611 38.462 0.00 0.00 0.00 2.59
5545 5736 6.950842 TGAAATTTCAGAGAAGAGAGGCATA 58.049 36.000 16.91 0.00 32.50 3.14
5546 5737 7.397221 TGAAATTTCAGAGAAGAGAGGCATAA 58.603 34.615 16.91 0.00 32.50 1.90
5547 5738 7.884877 TGAAATTTCAGAGAAGAGAGGCATAAA 59.115 33.333 16.91 0.00 32.50 1.40
5548 5739 8.641498 AAATTTCAGAGAAGAGAGGCATAAAA 57.359 30.769 0.00 0.00 0.00 1.52
5549 5740 7.622893 ATTTCAGAGAAGAGAGGCATAAAAC 57.377 36.000 0.00 0.00 0.00 2.43
5550 5741 5.745312 TCAGAGAAGAGAGGCATAAAACA 57.255 39.130 0.00 0.00 0.00 2.83
5551 5742 5.728471 TCAGAGAAGAGAGGCATAAAACAG 58.272 41.667 0.00 0.00 0.00 3.16
5552 5743 4.332268 CAGAGAAGAGAGGCATAAAACAGC 59.668 45.833 0.00 0.00 0.00 4.40
5553 5744 4.019860 AGAGAAGAGAGGCATAAAACAGCA 60.020 41.667 0.00 0.00 0.00 4.41
5554 5745 4.853007 AGAAGAGAGGCATAAAACAGCAT 58.147 39.130 0.00 0.00 0.00 3.79
5555 5746 4.880696 AGAAGAGAGGCATAAAACAGCATC 59.119 41.667 0.00 0.00 41.46 3.91
5556 5747 4.226427 AGAGAGGCATAAAACAGCATCA 57.774 40.909 0.00 0.00 43.39 3.07
5557 5748 4.789807 AGAGAGGCATAAAACAGCATCAT 58.210 39.130 0.00 0.00 43.39 2.45
5558 5749 5.933617 AGAGAGGCATAAAACAGCATCATA 58.066 37.500 0.00 0.00 43.39 2.15
5559 5750 6.540995 AGAGAGGCATAAAACAGCATCATAT 58.459 36.000 0.00 0.00 43.39 1.78
5560 5751 6.654161 AGAGAGGCATAAAACAGCATCATATC 59.346 38.462 0.00 0.00 43.39 1.63
5561 5752 6.540995 AGAGGCATAAAACAGCATCATATCT 58.459 36.000 0.00 0.00 43.39 1.98
5562 5753 6.654161 AGAGGCATAAAACAGCATCATATCTC 59.346 38.462 0.00 0.00 43.39 2.75
5563 5754 6.301486 AGGCATAAAACAGCATCATATCTCA 58.699 36.000 0.00 0.00 0.00 3.27
5564 5755 6.430308 AGGCATAAAACAGCATCATATCTCAG 59.570 38.462 0.00 0.00 0.00 3.35
5565 5756 6.084925 GCATAAAACAGCATCATATCTCAGC 58.915 40.000 0.00 0.00 0.00 4.26
5566 5757 6.609533 CATAAAACAGCATCATATCTCAGCC 58.390 40.000 0.00 0.00 0.00 4.85
5567 5758 4.434545 AAACAGCATCATATCTCAGCCT 57.565 40.909 0.00 0.00 0.00 4.58
5568 5759 4.434545 AACAGCATCATATCTCAGCCTT 57.565 40.909 0.00 0.00 0.00 4.35
5569 5760 5.557576 AACAGCATCATATCTCAGCCTTA 57.442 39.130 0.00 0.00 0.00 2.69
5570 5761 5.758790 ACAGCATCATATCTCAGCCTTAT 57.241 39.130 0.00 0.00 0.00 1.73
5571 5762 6.124316 ACAGCATCATATCTCAGCCTTATT 57.876 37.500 0.00 0.00 0.00 1.40
5572 5763 7.250032 ACAGCATCATATCTCAGCCTTATTA 57.750 36.000 0.00 0.00 0.00 0.98
5573 5764 7.859540 ACAGCATCATATCTCAGCCTTATTAT 58.140 34.615 0.00 0.00 0.00 1.28
5574 5765 7.769507 ACAGCATCATATCTCAGCCTTATTATG 59.230 37.037 0.00 0.00 0.00 1.90
5575 5766 7.985752 CAGCATCATATCTCAGCCTTATTATGA 59.014 37.037 0.00 0.00 0.00 2.15
5576 5767 8.205512 AGCATCATATCTCAGCCTTATTATGAG 58.794 37.037 0.00 0.00 41.47 2.90
5584 5775 7.894708 TCTCAGCCTTATTATGAGAGAGATTG 58.105 38.462 0.16 0.00 43.36 2.67
5585 5776 7.727634 TCTCAGCCTTATTATGAGAGAGATTGA 59.272 37.037 0.16 0.00 43.36 2.57
5586 5777 8.255111 TCAGCCTTATTATGAGAGAGATTGAA 57.745 34.615 0.00 0.00 0.00 2.69
5587 5778 8.366401 TCAGCCTTATTATGAGAGAGATTGAAG 58.634 37.037 0.00 0.00 0.00 3.02
5588 5779 8.149647 CAGCCTTATTATGAGAGAGATTGAAGT 58.850 37.037 0.00 0.00 0.00 3.01
5589 5780 8.149647 AGCCTTATTATGAGAGAGATTGAAGTG 58.850 37.037 0.00 0.00 0.00 3.16
5590 5781 8.147058 GCCTTATTATGAGAGAGATTGAAGTGA 58.853 37.037 0.00 0.00 0.00 3.41
5596 5787 7.903995 ATGAGAGAGATTGAAGTGAAAGAAC 57.096 36.000 0.00 0.00 0.00 3.01
5597 5788 6.226787 TGAGAGAGATTGAAGTGAAAGAACC 58.773 40.000 0.00 0.00 0.00 3.62
5598 5789 5.555966 AGAGAGATTGAAGTGAAAGAACCC 58.444 41.667 0.00 0.00 0.00 4.11
5599 5790 4.319177 AGAGATTGAAGTGAAAGAACCCG 58.681 43.478 0.00 0.00 0.00 5.28
5600 5791 3.412386 AGATTGAAGTGAAAGAACCCGG 58.588 45.455 0.00 0.00 0.00 5.73
5601 5792 2.721425 TTGAAGTGAAAGAACCCGGT 57.279 45.000 0.00 0.00 0.00 5.28
5602 5793 2.721425 TGAAGTGAAAGAACCCGGTT 57.279 45.000 1.22 1.22 0.00 4.44
5603 5794 3.007473 TGAAGTGAAAGAACCCGGTTT 57.993 42.857 3.77 0.00 0.00 3.27
5604 5795 2.946990 TGAAGTGAAAGAACCCGGTTTC 59.053 45.455 3.02 3.02 33.94 2.78
5605 5796 2.721425 AGTGAAAGAACCCGGTTTCA 57.279 45.000 14.74 13.51 39.73 2.69
5606 5797 2.572290 AGTGAAAGAACCCGGTTTCAG 58.428 47.619 14.74 0.00 42.01 3.02
5607 5798 2.171870 AGTGAAAGAACCCGGTTTCAGA 59.828 45.455 14.74 0.00 42.01 3.27
5608 5799 2.548480 GTGAAAGAACCCGGTTTCAGAG 59.452 50.000 14.74 0.00 42.01 3.35
5609 5800 1.535896 GAAAGAACCCGGTTTCAGAGC 59.464 52.381 14.74 0.00 33.61 4.09
5615 5806 4.354155 CGGTTTCAGAGCGTGGAA 57.646 55.556 0.00 0.00 43.89 3.53
5616 5807 2.612200 CGGTTTCAGAGCGTGGAAA 58.388 52.632 0.00 0.00 43.89 3.13
5618 5809 3.729004 GTTTCAGAGCGTGGAAACG 57.271 52.632 12.18 0.00 42.17 3.60
5619 5810 0.234884 GTTTCAGAGCGTGGAAACGG 59.765 55.000 12.18 0.00 42.17 4.44
5620 5811 0.105224 TTTCAGAGCGTGGAAACGGA 59.895 50.000 0.00 0.00 0.00 4.69
5621 5812 0.105224 TTCAGAGCGTGGAAACGGAA 59.895 50.000 0.00 0.00 0.00 4.30
5622 5813 0.105224 TCAGAGCGTGGAAACGGAAA 59.895 50.000 0.00 0.00 0.00 3.13
5623 5814 0.941542 CAGAGCGTGGAAACGGAAAA 59.058 50.000 0.00 0.00 0.00 2.29
5624 5815 1.069906 CAGAGCGTGGAAACGGAAAAG 60.070 52.381 0.00 0.00 0.00 2.27
5625 5816 1.202604 AGAGCGTGGAAACGGAAAAGA 60.203 47.619 0.00 0.00 0.00 2.52
5633 5824 6.021596 CGTGGAAACGGAAAAGAATATCTTG 58.978 40.000 0.00 0.00 36.71 3.02
5661 5852 1.676967 GAAACCCCTGCAGCCTCAG 60.677 63.158 8.66 0.00 0.00 3.35
5662 5853 3.875510 AAACCCCTGCAGCCTCAGC 62.876 63.158 8.66 0.00 40.32 4.26
5666 5857 4.486503 CCTGCAGCCTCAGCCCTC 62.487 72.222 8.66 0.00 41.25 4.30
5667 5858 3.714001 CTGCAGCCTCAGCCCTCA 61.714 66.667 0.00 0.00 41.25 3.86
5748 5939 1.067821 GTAGTTCCATCTCGCCTCTGG 59.932 57.143 0.00 0.00 0.00 3.86
5825 6017 1.067364 TCACTGTCTGCGTCGGTTTTA 59.933 47.619 0.00 0.00 0.00 1.52
5827 6019 2.285756 CACTGTCTGCGTCGGTTTTAAA 59.714 45.455 0.00 0.00 0.00 1.52
5857 6049 9.943163 TTTTTGGTTTTCTTTGTTTCTTTCTTG 57.057 25.926 0.00 0.00 0.00 3.02
5859 6051 6.764379 TGGTTTTCTTTGTTTCTTTCTTGGT 58.236 32.000 0.00 0.00 0.00 3.67
5860 6052 7.220740 TGGTTTTCTTTGTTTCTTTCTTGGTT 58.779 30.769 0.00 0.00 0.00 3.67
5919 6111 7.548967 TGTTTCTTTTATCGGTTTTCTTTGGT 58.451 30.769 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.507102 CTCTCGCACCGACGCATT 60.507 61.111 0.00 0.00 0.00 3.56
107 108 4.757355 CGCCATTTGGGAGGGGCA 62.757 66.667 0.00 0.00 46.75 5.36
209 216 1.290955 CCCTGGTTCGTTGTCGCTA 59.709 57.895 0.00 0.00 36.96 4.26
366 444 2.268762 TAACTGCCACATGTGCTCAA 57.731 45.000 20.81 4.25 0.00 3.02
468 556 5.863397 CGAAAATACATCACCAAACTTGCAT 59.137 36.000 0.00 0.00 0.00 3.96
483 571 6.713903 TGTGGTTACAAATACCCGAAAATACA 59.286 34.615 0.00 0.00 34.66 2.29
484 572 7.119553 TCTGTGGTTACAAATACCCGAAAATAC 59.880 37.037 0.00 0.00 36.14 1.89
485 573 7.166851 TCTGTGGTTACAAATACCCGAAAATA 58.833 34.615 0.00 0.00 36.14 1.40
486 574 6.005198 TCTGTGGTTACAAATACCCGAAAAT 58.995 36.000 0.00 0.00 36.14 1.82
487 575 5.374921 TCTGTGGTTACAAATACCCGAAAA 58.625 37.500 0.00 0.00 36.14 2.29
510 605 1.839424 GCTGGTGCCCATTTTAGTCT 58.161 50.000 0.00 0.00 30.82 3.24
518 613 4.666253 ACTTGCGCTGGTGCCCAT 62.666 61.111 9.73 0.00 35.36 4.00
561 656 5.844004 AGAGCAACTCGTCTTTCTCTAAAA 58.156 37.500 0.00 0.00 35.36 1.52
565 660 4.617298 GCTTAGAGCAACTCGTCTTTCTCT 60.617 45.833 0.00 0.00 41.89 3.10
566 661 3.610677 GCTTAGAGCAACTCGTCTTTCTC 59.389 47.826 0.00 0.00 41.89 2.87
567 662 3.580731 GCTTAGAGCAACTCGTCTTTCT 58.419 45.455 0.00 0.00 41.89 2.52
568 663 2.342948 CGCTTAGAGCAACTCGTCTTTC 59.657 50.000 0.50 0.00 42.58 2.62
569 664 2.329379 CGCTTAGAGCAACTCGTCTTT 58.671 47.619 0.50 0.00 42.58 2.52
570 665 1.983972 CGCTTAGAGCAACTCGTCTT 58.016 50.000 0.50 0.00 42.58 3.01
571 666 0.456995 GCGCTTAGAGCAACTCGTCT 60.457 55.000 0.00 0.00 42.58 4.18
572 667 0.732880 TGCGCTTAGAGCAACTCGTC 60.733 55.000 8.43 0.00 42.58 4.20
573 668 1.289066 TGCGCTTAGAGCAACTCGT 59.711 52.632 8.43 0.00 42.58 4.18
574 669 4.169102 TGCGCTTAGAGCAACTCG 57.831 55.556 8.43 0.00 42.58 4.18
589 684 0.034863 TCCATAACTTCCCCCGTTGC 60.035 55.000 0.00 0.00 0.00 4.17
606 701 7.929941 AAATGTTTCTACCAAGAAGAGATCC 57.070 36.000 0.00 0.00 42.60 3.36
647 742 9.533253 ACCAGAATTCATTAAGAAAAAGTTGTG 57.467 29.630 8.44 0.00 40.22 3.33
653 748 7.437862 GTGTGCACCAGAATTCATTAAGAAAAA 59.562 33.333 15.69 0.00 40.22 1.94
681 777 2.229792 GTCCAAGTGTGAAATGGAGCA 58.770 47.619 0.00 0.00 43.59 4.26
732 828 2.815647 GAAGGCTGGAGAACCGCG 60.816 66.667 0.00 0.00 39.42 6.46
845 951 6.183360 GGGGGTTAGCGATAGGGTTTATATAG 60.183 46.154 0.00 0.00 0.00 1.31
886 993 2.488153 CGTTTGTTTTGGGAGAGGGATC 59.512 50.000 0.00 0.00 0.00 3.36
953 1060 2.122954 GAGGGGGAGTGGACTGGT 59.877 66.667 0.00 0.00 0.00 4.00
1098 1214 2.947217 AGGGAAAGGGGGAAGGGC 60.947 66.667 0.00 0.00 0.00 5.19
1110 1228 4.329545 GCACAGTGCGGGAGGGAA 62.330 66.667 10.47 0.00 31.71 3.97
1184 1303 1.440353 CTAAACAAGCGCACACGGC 60.440 57.895 11.47 0.00 40.57 5.68
1204 1323 8.690840 CAATCAAACGAAATAAACAGGAGAAAC 58.309 33.333 0.00 0.00 0.00 2.78
1206 1325 7.367285 CCAATCAAACGAAATAAACAGGAGAA 58.633 34.615 0.00 0.00 0.00 2.87
1230 1349 0.032267 CCCGAGCTCTAAATCGACCC 59.968 60.000 12.85 0.00 41.40 4.46
1264 1383 3.268023 AGCTAGGTGTTGATAACTGCC 57.732 47.619 0.00 0.00 0.00 4.85
1265 1384 4.806247 CACTAGCTAGGTGTTGATAACTGC 59.194 45.833 24.35 0.00 0.00 4.40
1266 1385 4.806247 GCACTAGCTAGGTGTTGATAACTG 59.194 45.833 24.35 9.96 37.07 3.16
1267 1386 4.466370 TGCACTAGCTAGGTGTTGATAACT 59.534 41.667 24.35 0.00 42.74 2.24
1268 1387 4.755411 TGCACTAGCTAGGTGTTGATAAC 58.245 43.478 24.35 6.76 42.74 1.89
1269 1388 5.414789 TTGCACTAGCTAGGTGTTGATAA 57.585 39.130 24.35 9.57 42.74 1.75
1270 1389 5.414789 TTTGCACTAGCTAGGTGTTGATA 57.585 39.130 24.35 4.44 42.74 2.15
1271 1390 3.981071 TTGCACTAGCTAGGTGTTGAT 57.019 42.857 24.35 0.00 42.74 2.57
1272 1391 3.762407 TTTGCACTAGCTAGGTGTTGA 57.238 42.857 24.35 3.58 42.74 3.18
1273 1392 5.874810 TCTTATTTGCACTAGCTAGGTGTTG 59.125 40.000 24.35 14.21 42.74 3.33
1274 1393 6.049955 TCTTATTTGCACTAGCTAGGTGTT 57.950 37.500 24.35 0.40 42.74 3.32
1275 1394 5.677319 TCTTATTTGCACTAGCTAGGTGT 57.323 39.130 24.35 1.76 42.74 4.16
1276 1395 6.283694 TCATCTTATTTGCACTAGCTAGGTG 58.716 40.000 24.35 19.02 42.74 4.00
1287 1410 7.520798 AGAGAACCCATATCATCTTATTTGCA 58.479 34.615 0.00 0.00 0.00 4.08
1301 1424 5.823570 TCGTTGTTGAAAAAGAGAACCCATA 59.176 36.000 0.00 0.00 0.00 2.74
1303 1426 4.011023 TCGTTGTTGAAAAAGAGAACCCA 58.989 39.130 0.00 0.00 0.00 4.51
1332 1455 8.102800 TCGTTCACTCTAGTACTGTTTATTCA 57.897 34.615 5.39 0.00 0.00 2.57
1334 1457 9.570488 GAATCGTTCACTCTAGTACTGTTTATT 57.430 33.333 5.39 0.00 0.00 1.40
1337 1460 6.084925 CGAATCGTTCACTCTAGTACTGTTT 58.915 40.000 5.39 0.00 0.00 2.83
1410 1533 2.224992 ACAAGCCAATCACATACCACCA 60.225 45.455 0.00 0.00 0.00 4.17
1423 1546 5.334569 GCTATTTCACGTTAGAACAAGCCAA 60.335 40.000 8.90 0.00 33.00 4.52
1438 1561 5.904362 AAACAAGGGAGATGCTATTTCAC 57.096 39.130 0.00 0.00 0.00 3.18
1453 1576 6.364976 GGACCAATCAAACGAATTAAACAAGG 59.635 38.462 0.00 0.00 0.00 3.61
1462 1585 6.659242 ACTCTAAATGGACCAATCAAACGAAT 59.341 34.615 0.00 0.00 0.00 3.34
1491 1614 5.277538 GCAGTAGCAGTTGATAAATACAGCC 60.278 44.000 0.00 0.00 41.58 4.85
1512 1635 2.487934 CCCATCTCGTCCTATTTGCAG 58.512 52.381 0.00 0.00 0.00 4.41
1575 1698 1.016130 AAGCCGAATCGTGCACTCTG 61.016 55.000 16.19 3.49 0.00 3.35
1741 1868 5.203060 ACTGAGTCAACTTTGGAGTCTAC 57.797 43.478 0.00 0.00 36.04 2.59
1761 1888 9.047947 AGATGGAGTATTACCTTTAGACAAACT 57.952 33.333 0.00 0.00 0.00 2.66
1762 1889 9.099454 CAGATGGAGTATTACCTTTAGACAAAC 57.901 37.037 0.00 0.00 0.00 2.93
1822 1949 9.933723 GGTAAACAATCCTAGTAGTTGTCTTAA 57.066 33.333 6.62 0.00 35.19 1.85
1823 1950 9.092338 TGGTAAACAATCCTAGTAGTTGTCTTA 57.908 33.333 6.62 5.84 35.19 2.10
1824 1951 7.970102 TGGTAAACAATCCTAGTAGTTGTCTT 58.030 34.615 6.62 6.52 35.19 3.01
1842 1969 4.118093 AGTTGTTGCCTTGTTGGTAAAC 57.882 40.909 0.00 0.00 41.99 2.01
1888 2015 9.428097 ACTTACCTACGATTTCGACTTTATTTT 57.572 29.630 7.01 0.00 43.02 1.82
1892 2019 9.906660 TTTTACTTACCTACGATTTCGACTTTA 57.093 29.630 7.01 0.00 43.02 1.85
1950 2086 8.434661 CCAACAATTTGTTTGCTAATATGTGAC 58.565 33.333 12.02 0.00 38.77 3.67
2131 2277 6.980051 ATCAGGGTTATGTTAACGAACTTC 57.020 37.500 17.75 12.47 36.45 3.01
2138 2284 9.203421 CCTTTTTCAAATCAGGGTTATGTTAAC 57.797 33.333 0.00 0.00 0.00 2.01
2249 2395 3.200825 ACGAAATTGAGGATCCACCATCT 59.799 43.478 15.82 0.00 42.04 2.90
2461 2608 5.331876 AGAAATAGACAGCTACAGTGTCC 57.668 43.478 0.00 0.00 44.65 4.02
2474 2621 2.103263 ACCATGAGGCCGAGAAATAGAC 59.897 50.000 0.00 0.00 39.06 2.59
2740 2887 6.672266 ACTCCTTCATCAGTAAGAACTTCA 57.328 37.500 0.00 0.00 31.97 3.02
2785 2932 7.014905 TCGGCTGTAAAAGGATAAGCTTCTATA 59.985 37.037 0.00 0.00 34.29 1.31
2819 2966 6.367149 GCCTTTTCTTGTTCCTTCAATTCATC 59.633 38.462 0.00 0.00 0.00 2.92
2860 3007 6.255887 GTGTACCAAGCACACTATGAATAGTC 59.744 42.308 0.00 0.00 41.44 2.59
2899 3046 2.152830 TCCCCCGTGTTTGAAATTACG 58.847 47.619 9.65 9.65 36.39 3.18
3021 3175 4.536090 ACATACTTCCCCTCAAGATCAACA 59.464 41.667 0.00 0.00 0.00 3.33
3083 3237 2.524306 CAAGCACTGGGGTAAATTCCA 58.476 47.619 0.00 0.00 0.00 3.53
3225 3379 0.037326 GACACATCTTGTCGCCCTGA 60.037 55.000 0.00 0.00 45.33 3.86
3288 3442 1.386533 CATCAGGACCAATGAGCACC 58.613 55.000 0.00 0.00 0.00 5.01
3333 3487 5.751243 AACCGTGCTCATTAATTATGTCC 57.249 39.130 0.00 0.00 35.64 4.02
3351 3505 1.386525 CCTCCCATGCATCCAAACCG 61.387 60.000 0.00 0.00 0.00 4.44
3408 3562 1.474478 GCTTTAGCCTTTGCCTTCTCC 59.526 52.381 0.00 0.00 38.69 3.71
3433 3587 0.326264 AGGGACTCCAATGTCTGTGC 59.674 55.000 0.00 0.00 37.16 4.57
3468 3622 6.785337 TCTTTCCCGATGACAAAGTCTATA 57.215 37.500 0.00 0.00 33.15 1.31
3469 3623 5.677319 TCTTTCCCGATGACAAAGTCTAT 57.323 39.130 0.00 0.00 33.15 1.98
3526 3680 9.162764 GCCAACAAATAGTCTCTTTAATCTACA 57.837 33.333 0.00 0.00 0.00 2.74
3527 3681 9.162764 TGCCAACAAATAGTCTCTTTAATCTAC 57.837 33.333 0.00 0.00 0.00 2.59
3566 3720 9.832445 TCTAAGACACTTCAAACAGAAATAAGT 57.168 29.630 0.00 0.00 35.40 2.24
3585 3739 8.668510 TTTCCTCTGATGCAATATTCTAAGAC 57.331 34.615 0.00 0.00 0.00 3.01
3616 3770 7.167535 TGAAGGTCAACATTCAGATCAACATA 58.832 34.615 6.16 0.00 41.05 2.29
3619 3773 5.947228 TGAAGGTCAACATTCAGATCAAC 57.053 39.130 6.16 0.00 41.05 3.18
3637 3791 7.587629 TCTACTCTTCAAAATTGTGCATGAAG 58.412 34.615 16.05 16.05 46.36 3.02
3677 3831 7.256494 TGGATATTTCTGCCCTCAAATTTTT 57.744 32.000 0.00 0.00 0.00 1.94
3678 3832 6.872585 TGGATATTTCTGCCCTCAAATTTT 57.127 33.333 0.00 0.00 0.00 1.82
3679 3833 6.872585 TTGGATATTTCTGCCCTCAAATTT 57.127 33.333 0.00 0.00 0.00 1.82
3680 3834 7.441903 AATTGGATATTTCTGCCCTCAAATT 57.558 32.000 0.00 0.00 0.00 1.82
3681 3835 7.441903 AAATTGGATATTTCTGCCCTCAAAT 57.558 32.000 0.00 0.00 0.00 2.32
3682 3836 6.872585 AAATTGGATATTTCTGCCCTCAAA 57.127 33.333 0.00 0.00 0.00 2.69
3683 3837 6.213195 ACAAAATTGGATATTTCTGCCCTCAA 59.787 34.615 0.00 0.00 0.00 3.02
3684 3838 5.721000 ACAAAATTGGATATTTCTGCCCTCA 59.279 36.000 0.00 0.00 0.00 3.86
3685 3839 6.044682 CACAAAATTGGATATTTCTGCCCTC 58.955 40.000 0.00 0.00 0.00 4.30
3686 3840 5.484998 ACACAAAATTGGATATTTCTGCCCT 59.515 36.000 0.00 0.00 0.00 5.19
3687 3841 5.733676 ACACAAAATTGGATATTTCTGCCC 58.266 37.500 0.00 0.00 0.00 5.36
3688 3842 8.034804 ACTAACACAAAATTGGATATTTCTGCC 58.965 33.333 0.00 0.00 0.00 4.85
3689 3843 8.986477 ACTAACACAAAATTGGATATTTCTGC 57.014 30.769 0.00 0.00 0.00 4.26
3790 3944 8.837099 TCAACATGATATGGAGGGTTTAAATT 57.163 30.769 0.00 0.00 33.60 1.82
3796 3950 5.532406 CGAATTCAACATGATATGGAGGGTT 59.468 40.000 6.22 0.00 33.60 4.11
3814 3968 9.039870 AGAGATGAGAATGTTTATCACGAATTC 57.960 33.333 0.00 0.00 0.00 2.17
3815 3969 8.954950 AGAGATGAGAATGTTTATCACGAATT 57.045 30.769 0.00 0.00 0.00 2.17
3816 3970 8.420222 AGAGAGATGAGAATGTTTATCACGAAT 58.580 33.333 0.00 0.00 0.00 3.34
3817 3971 7.776107 AGAGAGATGAGAATGTTTATCACGAA 58.224 34.615 0.00 0.00 0.00 3.85
3818 3972 7.340122 AGAGAGATGAGAATGTTTATCACGA 57.660 36.000 0.00 0.00 0.00 4.35
3819 3973 8.349245 AGTAGAGAGATGAGAATGTTTATCACG 58.651 37.037 0.00 0.00 0.00 4.35
3822 3976 8.977505 GCAAGTAGAGAGATGAGAATGTTTATC 58.022 37.037 0.00 0.00 0.00 1.75
3823 3977 8.703743 AGCAAGTAGAGAGATGAGAATGTTTAT 58.296 33.333 0.00 0.00 0.00 1.40
3824 3978 8.072321 AGCAAGTAGAGAGATGAGAATGTTTA 57.928 34.615 0.00 0.00 0.00 2.01
3825 3979 6.945218 AGCAAGTAGAGAGATGAGAATGTTT 58.055 36.000 0.00 0.00 0.00 2.83
3826 3980 6.543430 AGCAAGTAGAGAGATGAGAATGTT 57.457 37.500 0.00 0.00 0.00 2.71
3827 3981 6.339730 CAAGCAAGTAGAGAGATGAGAATGT 58.660 40.000 0.00 0.00 0.00 2.71
3828 3982 5.754406 CCAAGCAAGTAGAGAGATGAGAATG 59.246 44.000 0.00 0.00 0.00 2.67
3829 3983 5.660417 TCCAAGCAAGTAGAGAGATGAGAAT 59.340 40.000 0.00 0.00 0.00 2.40
3830 3984 5.019470 TCCAAGCAAGTAGAGAGATGAGAA 58.981 41.667 0.00 0.00 0.00 2.87
3831 3985 4.400884 GTCCAAGCAAGTAGAGAGATGAGA 59.599 45.833 0.00 0.00 0.00 3.27
3832 3986 4.159321 TGTCCAAGCAAGTAGAGAGATGAG 59.841 45.833 0.00 0.00 0.00 2.90
3833 3987 4.089361 TGTCCAAGCAAGTAGAGAGATGA 58.911 43.478 0.00 0.00 0.00 2.92
3834 3988 4.462508 TGTCCAAGCAAGTAGAGAGATG 57.537 45.455 0.00 0.00 0.00 2.90
3835 3989 4.530161 AGTTGTCCAAGCAAGTAGAGAGAT 59.470 41.667 0.00 0.00 30.95 2.75
3836 3990 3.898123 AGTTGTCCAAGCAAGTAGAGAGA 59.102 43.478 0.00 0.00 30.95 3.10
3837 3991 4.264460 AGTTGTCCAAGCAAGTAGAGAG 57.736 45.455 0.00 0.00 30.95 3.20
3838 3992 4.689612 AAGTTGTCCAAGCAAGTAGAGA 57.310 40.909 0.00 0.00 32.30 3.10
3839 3993 7.440523 AAATAAGTTGTCCAAGCAAGTAGAG 57.559 36.000 0.00 0.00 32.30 2.43
3840 3994 8.946085 CATAAATAAGTTGTCCAAGCAAGTAGA 58.054 33.333 0.00 0.00 32.30 2.59
3841 3995 8.730680 ACATAAATAAGTTGTCCAAGCAAGTAG 58.269 33.333 0.00 0.00 32.30 2.57
3842 3996 8.630054 ACATAAATAAGTTGTCCAAGCAAGTA 57.370 30.769 0.00 0.00 32.30 2.24
3843 3997 7.230510 TGACATAAATAAGTTGTCCAAGCAAGT 59.769 33.333 0.00 0.00 39.17 3.16
3844 3998 7.592938 TGACATAAATAAGTTGTCCAAGCAAG 58.407 34.615 0.00 0.00 39.17 4.01
3845 3999 7.517614 TGACATAAATAAGTTGTCCAAGCAA 57.482 32.000 0.00 0.00 39.17 3.91
3846 4000 7.446931 TCTTGACATAAATAAGTTGTCCAAGCA 59.553 33.333 0.00 0.00 39.17 3.91
3847 4001 7.816640 TCTTGACATAAATAAGTTGTCCAAGC 58.183 34.615 0.00 0.00 39.17 4.01
3848 4002 7.965107 GCTCTTGACATAAATAAGTTGTCCAAG 59.035 37.037 0.00 0.00 39.17 3.61
3849 4003 7.665559 AGCTCTTGACATAAATAAGTTGTCCAA 59.334 33.333 0.00 0.00 39.17 3.53
3850 4004 7.168219 AGCTCTTGACATAAATAAGTTGTCCA 58.832 34.615 0.00 0.00 39.17 4.02
3851 4005 7.550906 AGAGCTCTTGACATAAATAAGTTGTCC 59.449 37.037 11.45 0.00 39.17 4.02
3866 4020 4.890581 TCTCCACCTAATAGAGCTCTTGAC 59.109 45.833 23.84 0.00 0.00 3.18
3881 4035 4.102598 AGCATGCTATGATATCTCCACCT 58.897 43.478 21.21 0.00 0.00 4.00
3887 4041 5.247792 TCTTGGTGAGCATGCTATGATATCT 59.752 40.000 22.74 0.00 0.00 1.98
3888 4042 5.485620 TCTTGGTGAGCATGCTATGATATC 58.514 41.667 22.74 7.08 0.00 1.63
3891 4045 3.851458 TCTTGGTGAGCATGCTATGAT 57.149 42.857 22.74 0.00 0.00 2.45
3893 4047 3.741249 AGATCTTGGTGAGCATGCTATG 58.259 45.455 22.74 7.47 32.67 2.23
3894 4048 4.434545 AAGATCTTGGTGAGCATGCTAT 57.565 40.909 22.74 8.56 32.67 2.97
3895 4049 3.920231 AAGATCTTGGTGAGCATGCTA 57.080 42.857 22.74 2.79 32.67 3.49
3896 4050 2.803030 AAGATCTTGGTGAGCATGCT 57.197 45.000 22.92 22.92 32.67 3.79
3897 4051 3.273434 TGTAAGATCTTGGTGAGCATGC 58.727 45.455 18.47 10.51 32.67 4.06
4064 4226 4.842531 TTATGGCTCAGAAATCTGGACA 57.157 40.909 10.37 9.63 43.91 4.02
4134 4297 6.070824 CCTGGACCCTAGCAAAATAATTTGTT 60.071 38.462 5.21 1.75 46.19 2.83
4178 4341 5.646692 TTAGGCTACCTGATAAATGGCTT 57.353 39.130 0.00 0.00 34.61 4.35
4221 4384 9.820229 CTGAACTGCAAAAACGTCTTATATTTA 57.180 29.630 0.00 0.00 0.00 1.40
4222 4385 8.349983 ACTGAACTGCAAAAACGTCTTATATTT 58.650 29.630 0.00 0.00 0.00 1.40
4223 4386 7.871853 ACTGAACTGCAAAAACGTCTTATATT 58.128 30.769 0.00 0.00 0.00 1.28
4224 4387 7.435068 ACTGAACTGCAAAAACGTCTTATAT 57.565 32.000 0.00 0.00 0.00 0.86
4225 4388 6.854496 ACTGAACTGCAAAAACGTCTTATA 57.146 33.333 0.00 0.00 0.00 0.98
4226 4389 5.751243 ACTGAACTGCAAAAACGTCTTAT 57.249 34.783 0.00 0.00 0.00 1.73
4227 4390 5.554822 AACTGAACTGCAAAAACGTCTTA 57.445 34.783 0.00 0.00 0.00 2.10
4228 4391 4.434713 AACTGAACTGCAAAAACGTCTT 57.565 36.364 0.00 0.00 0.00 3.01
4229 4392 4.083003 TCAAACTGAACTGCAAAAACGTCT 60.083 37.500 0.00 0.00 0.00 4.18
4230 4393 4.162812 TCAAACTGAACTGCAAAAACGTC 58.837 39.130 0.00 0.00 0.00 4.34
4231 4394 4.167554 TCAAACTGAACTGCAAAAACGT 57.832 36.364 0.00 0.00 0.00 3.99
4243 4406 9.352784 CAAGATGTTTTTGTAGTTCAAACTGAA 57.647 29.630 5.66 0.00 44.39 3.02
4244 4407 8.519526 ACAAGATGTTTTTGTAGTTCAAACTGA 58.480 29.630 5.66 0.00 44.39 3.41
4245 4408 8.687824 ACAAGATGTTTTTGTAGTTCAAACTG 57.312 30.769 5.66 0.00 44.39 3.16
4256 4419 9.487790 CCATACCAAAATACAAGATGTTTTTGT 57.512 29.630 18.37 4.87 41.36 2.83
4257 4420 9.703892 TCCATACCAAAATACAAGATGTTTTTG 57.296 29.630 15.76 15.76 37.67 2.44
4258 4421 9.927668 CTCCATACCAAAATACAAGATGTTTTT 57.072 29.630 0.00 0.00 33.95 1.94
4259 4422 8.531146 CCTCCATACCAAAATACAAGATGTTTT 58.469 33.333 0.00 0.00 32.27 2.43
4260 4423 7.124147 CCCTCCATACCAAAATACAAGATGTTT 59.876 37.037 0.00 0.00 0.00 2.83
4261 4424 6.607198 CCCTCCATACCAAAATACAAGATGTT 59.393 38.462 0.00 0.00 0.00 2.71
4262 4425 6.069088 TCCCTCCATACCAAAATACAAGATGT 60.069 38.462 0.00 0.00 0.00 3.06
4263 4426 6.364701 TCCCTCCATACCAAAATACAAGATG 58.635 40.000 0.00 0.00 0.00 2.90
4264 4427 6.160459 ACTCCCTCCATACCAAAATACAAGAT 59.840 38.462 0.00 0.00 0.00 2.40
4265 4428 5.491078 ACTCCCTCCATACCAAAATACAAGA 59.509 40.000 0.00 0.00 0.00 3.02
4266 4429 5.755849 ACTCCCTCCATACCAAAATACAAG 58.244 41.667 0.00 0.00 0.00 3.16
4267 4430 5.789574 ACTCCCTCCATACCAAAATACAA 57.210 39.130 0.00 0.00 0.00 2.41
4268 4431 6.617784 TCATACTCCCTCCATACCAAAATACA 59.382 38.462 0.00 0.00 0.00 2.29
4269 4432 7.074653 TCATACTCCCTCCATACCAAAATAC 57.925 40.000 0.00 0.00 0.00 1.89
4270 4433 7.888514 ATCATACTCCCTCCATACCAAAATA 57.111 36.000 0.00 0.00 0.00 1.40
4271 4434 6.786843 ATCATACTCCCTCCATACCAAAAT 57.213 37.500 0.00 0.00 0.00 1.82
4272 4435 7.888514 ATATCATACTCCCTCCATACCAAAA 57.111 36.000 0.00 0.00 0.00 2.44
4273 4436 9.574577 AATATATCATACTCCCTCCATACCAAA 57.425 33.333 0.00 0.00 0.00 3.28
4274 4437 8.992349 CAATATATCATACTCCCTCCATACCAA 58.008 37.037 0.00 0.00 0.00 3.67
4275 4438 8.351414 TCAATATATCATACTCCCTCCATACCA 58.649 37.037 0.00 0.00 0.00 3.25
4276 4439 8.783660 TCAATATATCATACTCCCTCCATACC 57.216 38.462 0.00 0.00 0.00 2.73
4305 4468 8.554528 CGTCAATGATTTAAGAATAGCAGTGAT 58.445 33.333 0.00 0.00 31.34 3.06
4306 4469 7.763985 TCGTCAATGATTTAAGAATAGCAGTGA 59.236 33.333 0.00 0.00 28.13 3.41
4307 4470 7.909267 TCGTCAATGATTTAAGAATAGCAGTG 58.091 34.615 0.00 0.00 0.00 3.66
4308 4471 8.554528 CATCGTCAATGATTTAAGAATAGCAGT 58.445 33.333 0.00 0.00 37.59 4.40
4309 4472 8.768019 TCATCGTCAATGATTTAAGAATAGCAG 58.232 33.333 0.00 0.00 39.52 4.24
4310 4473 8.661352 TCATCGTCAATGATTTAAGAATAGCA 57.339 30.769 0.00 0.00 39.52 3.49
4311 4474 7.743838 GCTCATCGTCAATGATTTAAGAATAGC 59.256 37.037 0.00 0.00 43.44 2.97
4312 4475 8.768019 TGCTCATCGTCAATGATTTAAGAATAG 58.232 33.333 0.00 0.00 43.44 1.73
4313 4476 8.661352 TGCTCATCGTCAATGATTTAAGAATA 57.339 30.769 0.00 0.00 43.44 1.75
4396 4567 9.467796 TCAGTCTTCTCTTATCACAATCTTAGA 57.532 33.333 0.00 0.00 0.00 2.10
4558 4729 2.440539 TCGCTGTTCTTCTCCTTGAC 57.559 50.000 0.00 0.00 0.00 3.18
4657 4828 1.608283 CCTGTCGTCTTCCAAGGGAAC 60.608 57.143 0.00 0.00 36.71 3.62
4659 4830 0.178944 TCCTGTCGTCTTCCAAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
5040 5211 1.956636 GCATCTTGCCCATTCACCTCA 60.957 52.381 0.00 0.00 37.42 3.86
5055 5226 2.124653 GCCTCAGCAGCAGCATCT 60.125 61.111 3.17 0.00 45.49 2.90
5085 5256 4.446413 CCCTCGCACACGTACCCC 62.446 72.222 0.00 0.00 41.18 4.95
5133 5304 1.201181 GCAAGGAACACACACAACACA 59.799 47.619 0.00 0.00 0.00 3.72
5220 5392 8.267894 CACCAGGATATATAAATACCTCCCAAG 58.732 40.741 0.00 0.00 0.00 3.61
5222 5394 7.402071 GTCACCAGGATATATAAATACCTCCCA 59.598 40.741 0.00 0.00 0.00 4.37
5224 5396 8.375493 TGTCACCAGGATATATAAATACCTCC 57.625 38.462 0.00 0.00 0.00 4.30
5232 5404 9.448438 GCACATAAATGTCACCAGGATATATAA 57.552 33.333 0.00 0.00 39.39 0.98
5236 5408 5.693961 TGCACATAAATGTCACCAGGATAT 58.306 37.500 0.00 0.00 39.39 1.63
5238 5410 3.966979 TGCACATAAATGTCACCAGGAT 58.033 40.909 0.00 0.00 39.39 3.24
5241 5413 5.286797 CGATTTTGCACATAAATGTCACCAG 59.713 40.000 0.00 0.00 39.39 4.00
5323 5507 4.391830 GTGAACTGACAGAAACAGAACACA 59.608 41.667 10.08 0.00 40.36 3.72
5545 5736 4.789807 AGGCTGAGATATGATGCTGTTTT 58.210 39.130 0.00 0.00 0.00 2.43
5546 5737 4.434545 AGGCTGAGATATGATGCTGTTT 57.565 40.909 0.00 0.00 0.00 2.83
5547 5738 4.434545 AAGGCTGAGATATGATGCTGTT 57.565 40.909 0.00 0.00 0.00 3.16
5548 5739 5.758790 ATAAGGCTGAGATATGATGCTGT 57.241 39.130 0.00 0.00 0.00 4.40
5549 5740 7.985752 TCATAATAAGGCTGAGATATGATGCTG 59.014 37.037 6.20 0.00 0.00 4.41
5550 5741 8.087303 TCATAATAAGGCTGAGATATGATGCT 57.913 34.615 6.20 0.00 0.00 3.79
5551 5742 8.202811 TCTCATAATAAGGCTGAGATATGATGC 58.797 37.037 9.46 0.00 40.24 3.91
5552 5743 9.752961 CTCTCATAATAAGGCTGAGATATGATG 57.247 37.037 9.46 3.71 43.17 3.07
5553 5744 9.712250 TCTCTCATAATAAGGCTGAGATATGAT 57.288 33.333 9.46 0.00 43.17 2.45
5554 5745 9.187996 CTCTCTCATAATAAGGCTGAGATATGA 57.812 37.037 8.91 8.91 43.17 2.15
5555 5746 9.187996 TCTCTCTCATAATAAGGCTGAGATATG 57.812 37.037 2.80 2.58 43.17 1.78
5556 5747 9.940974 ATCTCTCTCATAATAAGGCTGAGATAT 57.059 33.333 5.23 0.00 43.17 1.63
5557 5748 9.766754 AATCTCTCTCATAATAAGGCTGAGATA 57.233 33.333 6.97 0.00 43.17 1.98
5558 5749 8.533657 CAATCTCTCTCATAATAAGGCTGAGAT 58.466 37.037 2.80 2.38 43.17 2.75
5559 5750 7.727634 TCAATCTCTCTCATAATAAGGCTGAGA 59.272 37.037 0.00 0.00 42.24 3.27
5560 5751 7.894708 TCAATCTCTCTCATAATAAGGCTGAG 58.105 38.462 0.00 0.00 38.18 3.35
5561 5752 7.846101 TCAATCTCTCTCATAATAAGGCTGA 57.154 36.000 0.00 0.00 0.00 4.26
5562 5753 8.149647 ACTTCAATCTCTCTCATAATAAGGCTG 58.850 37.037 0.00 0.00 0.00 4.85
5563 5754 8.149647 CACTTCAATCTCTCTCATAATAAGGCT 58.850 37.037 0.00 0.00 0.00 4.58
5564 5755 8.147058 TCACTTCAATCTCTCTCATAATAAGGC 58.853 37.037 0.00 0.00 0.00 4.35
5570 5761 9.429359 GTTCTTTCACTTCAATCTCTCTCATAA 57.571 33.333 0.00 0.00 0.00 1.90
5571 5762 8.037758 GGTTCTTTCACTTCAATCTCTCTCATA 58.962 37.037 0.00 0.00 0.00 2.15
5572 5763 6.878389 GGTTCTTTCACTTCAATCTCTCTCAT 59.122 38.462 0.00 0.00 0.00 2.90
5573 5764 6.226787 GGTTCTTTCACTTCAATCTCTCTCA 58.773 40.000 0.00 0.00 0.00 3.27
5574 5765 5.641636 GGGTTCTTTCACTTCAATCTCTCTC 59.358 44.000 0.00 0.00 0.00 3.20
5575 5766 5.555966 GGGTTCTTTCACTTCAATCTCTCT 58.444 41.667 0.00 0.00 0.00 3.10
5576 5767 4.390297 CGGGTTCTTTCACTTCAATCTCTC 59.610 45.833 0.00 0.00 0.00 3.20
5577 5768 4.319177 CGGGTTCTTTCACTTCAATCTCT 58.681 43.478 0.00 0.00 0.00 3.10
5578 5769 3.437049 CCGGGTTCTTTCACTTCAATCTC 59.563 47.826 0.00 0.00 0.00 2.75
5579 5770 3.181443 ACCGGGTTCTTTCACTTCAATCT 60.181 43.478 6.32 0.00 0.00 2.40
5580 5771 3.146847 ACCGGGTTCTTTCACTTCAATC 58.853 45.455 6.32 0.00 0.00 2.67
5581 5772 3.223674 ACCGGGTTCTTTCACTTCAAT 57.776 42.857 6.32 0.00 0.00 2.57
5582 5773 2.721425 ACCGGGTTCTTTCACTTCAA 57.279 45.000 6.32 0.00 0.00 2.69
5583 5774 2.721425 AACCGGGTTCTTTCACTTCA 57.279 45.000 6.59 0.00 0.00 3.02
5584 5775 2.946990 TGAAACCGGGTTCTTTCACTTC 59.053 45.455 31.34 4.30 32.62 3.01
5585 5776 2.949644 CTGAAACCGGGTTCTTTCACTT 59.050 45.455 31.34 0.00 33.73 3.16
5586 5777 2.171870 TCTGAAACCGGGTTCTTTCACT 59.828 45.455 31.34 0.00 33.73 3.41
5587 5778 2.548480 CTCTGAAACCGGGTTCTTTCAC 59.452 50.000 31.34 6.60 33.73 3.18
5588 5779 2.846193 CTCTGAAACCGGGTTCTTTCA 58.154 47.619 31.34 22.37 35.56 2.69
5589 5780 1.535896 GCTCTGAAACCGGGTTCTTTC 59.464 52.381 31.34 19.16 0.00 2.62
5590 5781 1.605753 GCTCTGAAACCGGGTTCTTT 58.394 50.000 31.34 10.74 0.00 2.52
5591 5782 0.602905 CGCTCTGAAACCGGGTTCTT 60.603 55.000 31.34 6.93 0.00 2.52
5592 5783 1.004918 CGCTCTGAAACCGGGTTCT 60.005 57.895 31.34 0.00 0.00 3.01
5593 5784 1.301479 ACGCTCTGAAACCGGGTTC 60.301 57.895 25.82 25.82 0.00 3.62
5594 5785 1.597027 CACGCTCTGAAACCGGGTT 60.597 57.895 3.10 3.10 0.00 4.11
5595 5786 2.030562 CACGCTCTGAAACCGGGT 59.969 61.111 6.32 0.00 0.00 5.28
5596 5787 2.725203 TTCCACGCTCTGAAACCGGG 62.725 60.000 6.32 0.00 0.00 5.73
5597 5788 0.882927 TTTCCACGCTCTGAAACCGG 60.883 55.000 0.00 0.00 0.00 5.28
5598 5789 0.234884 GTTTCCACGCTCTGAAACCG 59.765 55.000 9.43 0.00 42.75 4.44
5599 5790 0.234884 CGTTTCCACGCTCTGAAACC 59.765 55.000 13.01 1.46 44.66 3.27
5600 5791 0.234884 CCGTTTCCACGCTCTGAAAC 59.765 55.000 10.18 10.18 45.72 2.78
5601 5792 0.105224 TCCGTTTCCACGCTCTGAAA 59.895 50.000 0.00 0.00 45.72 2.69
5602 5793 0.105224 TTCCGTTTCCACGCTCTGAA 59.895 50.000 0.00 0.00 45.72 3.02
5603 5794 0.105224 TTTCCGTTTCCACGCTCTGA 59.895 50.000 0.00 0.00 45.72 3.27
5604 5795 0.941542 TTTTCCGTTTCCACGCTCTG 59.058 50.000 0.00 0.00 45.72 3.35
5605 5796 1.202604 TCTTTTCCGTTTCCACGCTCT 60.203 47.619 0.00 0.00 45.72 4.09
5606 5797 1.223187 TCTTTTCCGTTTCCACGCTC 58.777 50.000 0.00 0.00 45.72 5.03
5607 5798 1.670791 TTCTTTTCCGTTTCCACGCT 58.329 45.000 0.00 0.00 45.72 5.07
5608 5799 2.699251 ATTCTTTTCCGTTTCCACGC 57.301 45.000 0.00 0.00 45.72 5.34
5609 5800 5.796350 AGATATTCTTTTCCGTTTCCACG 57.204 39.130 0.00 0.00 46.71 4.94
5610 5801 7.141100 TCAAGATATTCTTTTCCGTTTCCAC 57.859 36.000 0.00 0.00 33.78 4.02
5611 5802 6.128007 GCTCAAGATATTCTTTTCCGTTTCCA 60.128 38.462 0.00 0.00 33.78 3.53
5612 5803 6.258899 GCTCAAGATATTCTTTTCCGTTTCC 58.741 40.000 0.00 0.00 33.78 3.13
5613 5804 6.258899 GGCTCAAGATATTCTTTTCCGTTTC 58.741 40.000 0.00 0.00 33.78 2.78
5614 5805 5.125578 GGGCTCAAGATATTCTTTTCCGTTT 59.874 40.000 0.00 0.00 33.78 3.60
5615 5806 4.640647 GGGCTCAAGATATTCTTTTCCGTT 59.359 41.667 0.00 0.00 33.78 4.44
5616 5807 4.200092 GGGCTCAAGATATTCTTTTCCGT 58.800 43.478 0.00 0.00 33.78 4.69
5617 5808 4.199310 TGGGCTCAAGATATTCTTTTCCG 58.801 43.478 0.00 0.00 33.78 4.30
5618 5809 6.721704 AATGGGCTCAAGATATTCTTTTCC 57.278 37.500 0.00 0.00 33.78 3.13
5619 5810 7.775120 TCAAATGGGCTCAAGATATTCTTTTC 58.225 34.615 0.00 0.00 33.78 2.29
5620 5811 7.722949 TCAAATGGGCTCAAGATATTCTTTT 57.277 32.000 0.00 0.00 33.78 2.27
5621 5812 7.722949 TTCAAATGGGCTCAAGATATTCTTT 57.277 32.000 0.00 0.00 33.78 2.52
5622 5813 7.364144 GGTTTCAAATGGGCTCAAGATATTCTT 60.364 37.037 0.00 0.00 37.14 2.52
5623 5814 6.097412 GGTTTCAAATGGGCTCAAGATATTCT 59.903 38.462 0.00 0.00 0.00 2.40
5624 5815 6.276091 GGTTTCAAATGGGCTCAAGATATTC 58.724 40.000 0.00 0.00 0.00 1.75
5625 5816 5.129320 GGGTTTCAAATGGGCTCAAGATATT 59.871 40.000 0.00 0.00 0.00 1.28
5633 5824 0.897621 CAGGGGTTTCAAATGGGCTC 59.102 55.000 0.00 0.00 0.00 4.70
5661 5852 0.951558 TTTCTTGTTCGCTTGAGGGC 59.048 50.000 0.00 0.00 0.00 5.19
5662 5853 2.030805 CCTTTTCTTGTTCGCTTGAGGG 60.031 50.000 0.00 0.00 0.00 4.30
5663 5854 2.605580 GCCTTTTCTTGTTCGCTTGAGG 60.606 50.000 0.00 0.00 0.00 3.86
5664 5855 2.654987 GCCTTTTCTTGTTCGCTTGAG 58.345 47.619 0.00 0.00 0.00 3.02
5665 5856 1.002900 CGCCTTTTCTTGTTCGCTTGA 60.003 47.619 0.00 0.00 0.00 3.02
5666 5857 1.002900 TCGCCTTTTCTTGTTCGCTTG 60.003 47.619 0.00 0.00 0.00 4.01
5667 5858 1.305201 TCGCCTTTTCTTGTTCGCTT 58.695 45.000 0.00 0.00 0.00 4.68
5883 6075 9.810545 ACCGATAAAAGAAACAAAGAAAATTGA 57.189 25.926 0.00 0.00 34.38 2.57
5888 6080 9.863845 AGAAAACCGATAAAAGAAACAAAGAAA 57.136 25.926 0.00 0.00 0.00 2.52
5889 6081 9.863845 AAGAAAACCGATAAAAGAAACAAAGAA 57.136 25.926 0.00 0.00 0.00 2.52
5890 6082 9.863845 AAAGAAAACCGATAAAAGAAACAAAGA 57.136 25.926 0.00 0.00 0.00 2.52
5891 6083 9.900264 CAAAGAAAACCGATAAAAGAAACAAAG 57.100 29.630 0.00 0.00 0.00 2.77
5892 6084 8.874816 CCAAAGAAAACCGATAAAAGAAACAAA 58.125 29.630 0.00 0.00 0.00 2.83
5937 6130 9.708222 GTATGAAAAATGTAGACATGTGCTAAG 57.292 33.333 1.15 0.00 36.56 2.18
5941 6134 7.304735 TGTGTATGAAAAATGTAGACATGTGC 58.695 34.615 1.15 0.00 36.56 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.