Multiple sequence alignment - TraesCS2B01G488400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G488400 | chr2B | 100.000 | 7343 | 0 | 0 | 1 | 7343 | 685740277 | 685747619 | 0.000000e+00 | 13561.0 |
1 | TraesCS2B01G488400 | chr2B | 87.046 | 3250 | 337 | 20 | 2391 | 5604 | 686455014 | 686458215 | 0.000000e+00 | 3592.0 |
2 | TraesCS2B01G488400 | chr2B | 87.715 | 2906 | 333 | 11 | 2391 | 5279 | 685802070 | 685804968 | 0.000000e+00 | 3367.0 |
3 | TraesCS2B01G488400 | chr2B | 90.009 | 2112 | 179 | 8 | 3830 | 5922 | 685814746 | 685816844 | 0.000000e+00 | 2702.0 |
4 | TraesCS2B01G488400 | chr2B | 88.716 | 1994 | 208 | 5 | 3303 | 5280 | 685804971 | 685806963 | 0.000000e+00 | 2420.0 |
5 | TraesCS2B01G488400 | chr2B | 88.516 | 1994 | 208 | 6 | 3303 | 5280 | 685806965 | 685808953 | 0.000000e+00 | 2394.0 |
6 | TraesCS2B01G488400 | chr2B | 88.638 | 1505 | 153 | 11 | 4433 | 5922 | 685268910 | 685270411 | 0.000000e+00 | 1816.0 |
7 | TraesCS2B01G488400 | chr2B | 81.203 | 2011 | 328 | 33 | 1932 | 3916 | 686810986 | 686812972 | 0.000000e+00 | 1574.0 |
8 | TraesCS2B01G488400 | chr2B | 79.707 | 1641 | 261 | 42 | 3920 | 5521 | 686812946 | 686814553 | 0.000000e+00 | 1120.0 |
9 | TraesCS2B01G488400 | chr2B | 87.087 | 968 | 87 | 19 | 881 | 1837 | 686453514 | 686454454 | 0.000000e+00 | 1061.0 |
10 | TraesCS2B01G488400 | chr2B | 91.690 | 722 | 35 | 5 | 1 | 700 | 267625186 | 267624468 | 0.000000e+00 | 977.0 |
11 | TraesCS2B01G488400 | chr2B | 90.985 | 721 | 27 | 9 | 1 | 700 | 230703389 | 230702686 | 0.000000e+00 | 937.0 |
12 | TraesCS2B01G488400 | chr2B | 90.608 | 724 | 40 | 10 | 1 | 700 | 364685561 | 364686280 | 0.000000e+00 | 935.0 |
13 | TraesCS2B01G488400 | chr2B | 89.080 | 522 | 57 | 0 | 3303 | 3824 | 685808955 | 685809476 | 0.000000e+00 | 649.0 |
14 | TraesCS2B01G488400 | chr2B | 90.260 | 462 | 42 | 3 | 5951 | 6410 | 685270512 | 685270972 | 1.050000e-167 | 601.0 |
15 | TraesCS2B01G488400 | chr2B | 75.760 | 1118 | 207 | 46 | 4520 | 5604 | 686048967 | 686050053 | 8.500000e-139 | 505.0 |
16 | TraesCS2B01G488400 | chr2B | 88.834 | 403 | 35 | 5 | 1927 | 2329 | 686454614 | 686455006 | 3.080000e-133 | 486.0 |
17 | TraesCS2B01G488400 | chr2B | 84.938 | 405 | 58 | 2 | 1925 | 2329 | 685801661 | 685802062 | 2.470000e-109 | 407.0 |
18 | TraesCS2B01G488400 | chr2B | 88.323 | 334 | 39 | 0 | 5949 | 6282 | 685816943 | 685817276 | 1.150000e-107 | 401.0 |
19 | TraesCS2B01G488400 | chr2B | 88.496 | 339 | 26 | 6 | 6619 | 6944 | 685271560 | 685271898 | 1.480000e-106 | 398.0 |
20 | TraesCS2B01G488400 | chr2B | 81.395 | 430 | 71 | 8 | 5949 | 6374 | 686458599 | 686459023 | 7.050000e-90 | 342.0 |
21 | TraesCS2B01G488400 | chr2B | 84.257 | 343 | 48 | 5 | 5949 | 6288 | 686050422 | 686050761 | 5.490000e-86 | 329.0 |
22 | TraesCS2B01G488400 | chr2B | 82.082 | 413 | 24 | 17 | 6328 | 6697 | 685817281 | 685817686 | 2.570000e-79 | 307.0 |
23 | TraesCS2B01G488400 | chr2B | 90.955 | 199 | 15 | 2 | 6749 | 6944 | 685820988 | 685821186 | 1.570000e-66 | 265.0 |
24 | TraesCS2B01G488400 | chr2B | 84.800 | 250 | 22 | 7 | 7077 | 7323 | 685272068 | 685272304 | 3.420000e-58 | 237.0 |
25 | TraesCS2B01G488400 | chr2B | 85.153 | 229 | 27 | 6 | 5698 | 5924 | 686458279 | 686458502 | 2.060000e-55 | 228.0 |
26 | TraesCS2B01G488400 | chr2B | 90.132 | 152 | 15 | 0 | 700 | 851 | 400625423 | 400625574 | 1.620000e-46 | 198.0 |
27 | TraesCS2B01G488400 | chr2B | 84.946 | 186 | 7 | 6 | 6438 | 6602 | 685271175 | 685271360 | 1.270000e-37 | 169.0 |
28 | TraesCS2B01G488400 | chr2B | 86.250 | 160 | 17 | 5 | 5758 | 5915 | 686050153 | 686050309 | 1.270000e-37 | 169.0 |
29 | TraesCS2B01G488400 | chr2B | 80.488 | 246 | 19 | 12 | 1030 | 1272 | 685800900 | 685801119 | 2.120000e-35 | 161.0 |
30 | TraesCS2B01G488400 | chr2B | 89.655 | 116 | 12 | 0 | 6751 | 6866 | 685817695 | 685817810 | 1.650000e-31 | 148.0 |
31 | TraesCS2B01G488400 | chr2B | 83.735 | 166 | 12 | 9 | 6513 | 6669 | 685819430 | 685819589 | 7.680000e-30 | 143.0 |
32 | TraesCS2B01G488400 | chr2B | 75.385 | 260 | 64 | 0 | 1019 | 1278 | 686809435 | 686809694 | 7.730000e-25 | 126.0 |
33 | TraesCS2B01G488400 | chr2B | 95.349 | 43 | 2 | 0 | 6473 | 6515 | 685819371 | 685819413 | 1.320000e-07 | 69.4 |
34 | TraesCS2B01G488400 | chr2A | 85.750 | 2793 | 362 | 26 | 1941 | 4710 | 711036350 | 711039129 | 0.000000e+00 | 2920.0 |
35 | TraesCS2B01G488400 | chr2A | 87.882 | 1733 | 173 | 18 | 4051 | 5754 | 710802216 | 710803940 | 0.000000e+00 | 2002.0 |
36 | TraesCS2B01G488400 | chr2A | 87.451 | 1028 | 87 | 20 | 5949 | 6945 | 710804226 | 710805242 | 0.000000e+00 | 1146.0 |
37 | TraesCS2B01G488400 | chr2A | 81.260 | 1206 | 188 | 26 | 4433 | 5604 | 710653313 | 710654514 | 0.000000e+00 | 941.0 |
38 | TraesCS2B01G488400 | chr2A | 77.888 | 1506 | 291 | 28 | 2403 | 3896 | 710756340 | 710757815 | 0.000000e+00 | 898.0 |
39 | TraesCS2B01G488400 | chr2A | 74.888 | 2011 | 403 | 69 | 1919 | 3896 | 711059067 | 711061008 | 0.000000e+00 | 822.0 |
40 | TraesCS2B01G488400 | chr2A | 76.514 | 1618 | 302 | 46 | 4051 | 5604 | 711061097 | 711062700 | 0.000000e+00 | 811.0 |
41 | TraesCS2B01G488400 | chr2A | 78.206 | 1037 | 191 | 27 | 2511 | 3525 | 710800657 | 710801680 | 1.340000e-176 | 630.0 |
42 | TraesCS2B01G488400 | chr2A | 83.069 | 378 | 61 | 2 | 5949 | 6323 | 711050028 | 711050405 | 2.540000e-89 | 340.0 |
43 | TraesCS2B01G488400 | chr2A | 82.834 | 367 | 52 | 9 | 5963 | 6322 | 710654912 | 710655274 | 1.190000e-82 | 318.0 |
44 | TraesCS2B01G488400 | chr2A | 80.576 | 417 | 73 | 6 | 5963 | 6374 | 711063104 | 711063517 | 1.540000e-81 | 315.0 |
45 | TraesCS2B01G488400 | chr2A | 99.355 | 155 | 0 | 1 | 698 | 851 | 175462422 | 175462268 | 5.610000e-71 | 279.0 |
46 | TraesCS2B01G488400 | chr2A | 82.943 | 299 | 49 | 2 | 979 | 1276 | 711035423 | 711035720 | 1.210000e-67 | 268.0 |
47 | TraesCS2B01G488400 | chr2A | 89.503 | 181 | 19 | 0 | 5742 | 5922 | 710803956 | 710804136 | 5.730000e-56 | 230.0 |
48 | TraesCS2B01G488400 | chr2A | 84.956 | 226 | 29 | 4 | 5698 | 5922 | 710654578 | 710654799 | 2.670000e-54 | 224.0 |
49 | TraesCS2B01G488400 | chr2A | 82.007 | 289 | 22 | 6 | 7035 | 7323 | 710805246 | 710805504 | 1.240000e-52 | 219.0 |
50 | TraesCS2B01G488400 | chr2A | 78.214 | 280 | 59 | 2 | 988 | 1266 | 710755232 | 710755510 | 2.110000e-40 | 178.0 |
51 | TraesCS2B01G488400 | chr2A | 91.228 | 114 | 7 | 3 | 590 | 700 | 192065147 | 192065034 | 1.280000e-32 | 152.0 |
52 | TraesCS2B01G488400 | chr2A | 80.328 | 183 | 30 | 4 | 5702 | 5882 | 710759548 | 710759726 | 4.620000e-27 | 134.0 |
53 | TraesCS2B01G488400 | chr2D | 78.711 | 2001 | 366 | 43 | 1931 | 3896 | 572067199 | 572069174 | 0.000000e+00 | 1280.0 |
54 | TraesCS2B01G488400 | chr2D | 86.587 | 589 | 64 | 9 | 5343 | 5922 | 572034926 | 572035508 | 2.890000e-178 | 636.0 |
55 | TraesCS2B01G488400 | chr2D | 84.433 | 379 | 53 | 5 | 5949 | 6322 | 572035610 | 572035987 | 1.160000e-97 | 368.0 |
56 | TraesCS2B01G488400 | chr2D | 74.599 | 811 | 170 | 28 | 996 | 1788 | 572061808 | 572062600 | 2.560000e-84 | 324.0 |
57 | TraesCS2B01G488400 | chr2D | 82.258 | 124 | 17 | 4 | 6920 | 7038 | 392090437 | 392090560 | 1.300000e-17 | 102.0 |
58 | TraesCS2B01G488400 | chr1B | 92.669 | 723 | 30 | 7 | 1 | 700 | 304555016 | 304555738 | 0.000000e+00 | 1020.0 |
59 | TraesCS2B01G488400 | chr4B | 91.747 | 727 | 33 | 7 | 1 | 700 | 36645490 | 36646216 | 0.000000e+00 | 985.0 |
60 | TraesCS2B01G488400 | chr4B | 92.075 | 694 | 33 | 4 | 29 | 700 | 429220599 | 429221292 | 0.000000e+00 | 957.0 |
61 | TraesCS2B01G488400 | chr3B | 91.678 | 721 | 37 | 9 | 1 | 700 | 546145131 | 546144413 | 0.000000e+00 | 977.0 |
62 | TraesCS2B01G488400 | chr5B | 89.804 | 716 | 50 | 16 | 1 | 700 | 120210269 | 120209561 | 0.000000e+00 | 896.0 |
63 | TraesCS2B01G488400 | chr5B | 96.689 | 151 | 5 | 0 | 701 | 851 | 444084158 | 444084008 | 1.220000e-62 | 252.0 |
64 | TraesCS2B01G488400 | chr5B | 89.873 | 158 | 15 | 1 | 699 | 855 | 9618024 | 9618181 | 1.250000e-47 | 202.0 |
65 | TraesCS2B01G488400 | chr5B | 89.535 | 86 | 6 | 2 | 6941 | 7023 | 295106083 | 295105998 | 1.010000e-18 | 106.0 |
66 | TraesCS2B01G488400 | chr5A | 82.265 | 733 | 58 | 22 | 1 | 700 | 259098069 | 259098762 | 1.070000e-157 | 568.0 |
67 | TraesCS2B01G488400 | chr5A | 89.474 | 114 | 9 | 3 | 590 | 700 | 312586339 | 312586452 | 2.760000e-29 | 141.0 |
68 | TraesCS2B01G488400 | chr3A | 82.716 | 567 | 75 | 14 | 23 | 583 | 341296728 | 341296179 | 3.980000e-132 | 483.0 |
69 | TraesCS2B01G488400 | chr7B | 100.000 | 151 | 0 | 0 | 701 | 851 | 704278883 | 704279033 | 5.610000e-71 | 279.0 |
70 | TraesCS2B01G488400 | chr7B | 90.066 | 151 | 15 | 0 | 701 | 851 | 712632043 | 712631893 | 5.810000e-46 | 196.0 |
71 | TraesCS2B01G488400 | chr7A | 90.850 | 153 | 14 | 0 | 700 | 852 | 519850755 | 519850907 | 9.660000e-49 | 206.0 |
72 | TraesCS2B01G488400 | chr6D | 89.677 | 155 | 16 | 0 | 701 | 855 | 284851713 | 284851867 | 1.620000e-46 | 198.0 |
73 | TraesCS2B01G488400 | chr6D | 87.143 | 70 | 9 | 0 | 1206 | 1275 | 467815493 | 467815424 | 6.110000e-11 | 80.5 |
74 | TraesCS2B01G488400 | chr4A | 90.066 | 151 | 15 | 0 | 701 | 851 | 501966174 | 501966324 | 5.810000e-46 | 196.0 |
75 | TraesCS2B01G488400 | chr7D | 91.837 | 98 | 6 | 2 | 6938 | 7033 | 600238154 | 600238251 | 1.290000e-27 | 135.0 |
76 | TraesCS2B01G488400 | chr4D | 89.000 | 100 | 7 | 3 | 6939 | 7035 | 15316126 | 15316028 | 3.600000e-23 | 121.0 |
77 | TraesCS2B01G488400 | chr4D | 85.294 | 102 | 10 | 4 | 6941 | 7038 | 108302774 | 108302674 | 4.690000e-17 | 100.0 |
78 | TraesCS2B01G488400 | chr4D | 85.149 | 101 | 11 | 3 | 6941 | 7038 | 481201297 | 481201198 | 4.690000e-17 | 100.0 |
79 | TraesCS2B01G488400 | chr4D | 85.567 | 97 | 12 | 2 | 6942 | 7038 | 497545533 | 497545627 | 4.690000e-17 | 100.0 |
80 | TraesCS2B01G488400 | chr1A | 94.595 | 74 | 4 | 0 | 6959 | 7032 | 242805610 | 242805537 | 1.670000e-21 | 115.0 |
81 | TraesCS2B01G488400 | chr3D | 85.294 | 102 | 10 | 4 | 6941 | 7038 | 21002464 | 21002564 | 4.690000e-17 | 100.0 |
82 | TraesCS2B01G488400 | chr6B | 91.379 | 58 | 5 | 0 | 1206 | 1263 | 713114744 | 713114801 | 6.110000e-11 | 80.5 |
83 | TraesCS2B01G488400 | chr6A | 87.500 | 64 | 8 | 0 | 1206 | 1269 | 613927082 | 613927145 | 2.840000e-09 | 75.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G488400 | chr2B | 685740277 | 685747619 | 7342 | False | 13561.000000 | 13561 | 100.000000 | 1 | 7343 | 1 | chr2B.!!$F3 | 7342 |
1 | TraesCS2B01G488400 | chr2B | 685800900 | 685809476 | 8576 | False | 1566.333333 | 3367 | 86.575500 | 1030 | 5280 | 6 | chr2B.!!$F5 | 4250 |
2 | TraesCS2B01G488400 | chr2B | 686453514 | 686459023 | 5509 | False | 1141.800000 | 3592 | 85.903000 | 881 | 6374 | 5 | chr2B.!!$F8 | 5493 |
3 | TraesCS2B01G488400 | chr2B | 267624468 | 267625186 | 718 | True | 977.000000 | 977 | 91.690000 | 1 | 700 | 1 | chr2B.!!$R2 | 699 |
4 | TraesCS2B01G488400 | chr2B | 686809435 | 686814553 | 5118 | False | 940.000000 | 1574 | 78.765000 | 1019 | 5521 | 3 | chr2B.!!$F9 | 4502 |
5 | TraesCS2B01G488400 | chr2B | 230702686 | 230703389 | 703 | True | 937.000000 | 937 | 90.985000 | 1 | 700 | 1 | chr2B.!!$R1 | 699 |
6 | TraesCS2B01G488400 | chr2B | 364685561 | 364686280 | 719 | False | 935.000000 | 935 | 90.608000 | 1 | 700 | 1 | chr2B.!!$F1 | 699 |
7 | TraesCS2B01G488400 | chr2B | 685268910 | 685272304 | 3394 | False | 644.200000 | 1816 | 87.428000 | 4433 | 7323 | 5 | chr2B.!!$F4 | 2890 |
8 | TraesCS2B01G488400 | chr2B | 685814746 | 685821186 | 6440 | False | 576.485714 | 2702 | 88.586857 | 3830 | 6944 | 7 | chr2B.!!$F6 | 3114 |
9 | TraesCS2B01G488400 | chr2B | 686048967 | 686050761 | 1794 | False | 334.333333 | 505 | 82.089000 | 4520 | 6288 | 3 | chr2B.!!$F7 | 1768 |
10 | TraesCS2B01G488400 | chr2A | 711035423 | 711039129 | 3706 | False | 1594.000000 | 2920 | 84.346500 | 979 | 4710 | 2 | chr2A.!!$F5 | 3731 |
11 | TraesCS2B01G488400 | chr2A | 710800657 | 710805504 | 4847 | False | 845.400000 | 2002 | 85.009800 | 2511 | 7323 | 5 | chr2A.!!$F4 | 4812 |
12 | TraesCS2B01G488400 | chr2A | 711059067 | 711063517 | 4450 | False | 649.333333 | 822 | 77.326000 | 1919 | 6374 | 3 | chr2A.!!$F6 | 4455 |
13 | TraesCS2B01G488400 | chr2A | 710653313 | 710655274 | 1961 | False | 494.333333 | 941 | 83.016667 | 4433 | 6322 | 3 | chr2A.!!$F2 | 1889 |
14 | TraesCS2B01G488400 | chr2A | 710755232 | 710759726 | 4494 | False | 403.333333 | 898 | 78.810000 | 988 | 5882 | 3 | chr2A.!!$F3 | 4894 |
15 | TraesCS2B01G488400 | chr2D | 572067199 | 572069174 | 1975 | False | 1280.000000 | 1280 | 78.711000 | 1931 | 3896 | 1 | chr2D.!!$F3 | 1965 |
16 | TraesCS2B01G488400 | chr2D | 572034926 | 572035987 | 1061 | False | 502.000000 | 636 | 85.510000 | 5343 | 6322 | 2 | chr2D.!!$F4 | 979 |
17 | TraesCS2B01G488400 | chr2D | 572061808 | 572062600 | 792 | False | 324.000000 | 324 | 74.599000 | 996 | 1788 | 1 | chr2D.!!$F2 | 792 |
18 | TraesCS2B01G488400 | chr1B | 304555016 | 304555738 | 722 | False | 1020.000000 | 1020 | 92.669000 | 1 | 700 | 1 | chr1B.!!$F1 | 699 |
19 | TraesCS2B01G488400 | chr4B | 36645490 | 36646216 | 726 | False | 985.000000 | 985 | 91.747000 | 1 | 700 | 1 | chr4B.!!$F1 | 699 |
20 | TraesCS2B01G488400 | chr4B | 429220599 | 429221292 | 693 | False | 957.000000 | 957 | 92.075000 | 29 | 700 | 1 | chr4B.!!$F2 | 671 |
21 | TraesCS2B01G488400 | chr3B | 546144413 | 546145131 | 718 | True | 977.000000 | 977 | 91.678000 | 1 | 700 | 1 | chr3B.!!$R1 | 699 |
22 | TraesCS2B01G488400 | chr5B | 120209561 | 120210269 | 708 | True | 896.000000 | 896 | 89.804000 | 1 | 700 | 1 | chr5B.!!$R1 | 699 |
23 | TraesCS2B01G488400 | chr5A | 259098069 | 259098762 | 693 | False | 568.000000 | 568 | 82.265000 | 1 | 700 | 1 | chr5A.!!$F1 | 699 |
24 | TraesCS2B01G488400 | chr3A | 341296179 | 341296728 | 549 | True | 483.000000 | 483 | 82.716000 | 23 | 583 | 1 | chr3A.!!$R1 | 560 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
851 | 901 | 0.025513 | CGTCTGCATAGCTGTTTCGC | 59.974 | 55.0 | 0.00 | 0.00 | 0.00 | 4.70 | F |
1907 | 2850 | 0.033601 | AATAAGCACATCCCCCGCAA | 60.034 | 50.0 | 0.00 | 0.00 | 0.00 | 4.85 | F |
1909 | 2852 | 0.251386 | TAAGCACATCCCCCGCAAAA | 60.251 | 50.0 | 0.00 | 0.00 | 0.00 | 2.44 | F |
1911 | 2854 | 0.033601 | AGCACATCCCCCGCAAAATA | 60.034 | 50.0 | 0.00 | 0.00 | 0.00 | 1.40 | F |
3632 | 6969 | 0.250553 | TTTGCGAGGATGGTTTCGGT | 60.251 | 50.0 | 0.00 | 0.00 | 37.30 | 4.69 | F |
3907 | 7244 | 0.031857 | CCTGCTGCGAGTATCTCCAG | 59.968 | 60.0 | 0.00 | 9.31 | 34.37 | 3.86 | F |
4033 | 7379 | 0.240945 | CGGGATTGTGCCACAAGTTC | 59.759 | 55.0 | 16.35 | 9.32 | 41.94 | 3.01 | F |
5224 | 10638 | 0.328926 | TTCACATGAGATGCCAGCCA | 59.671 | 50.0 | 0.00 | 0.00 | 0.00 | 4.75 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2104 | 3053 | 0.035056 | GCATACCTGCTGTCCCACTT | 60.035 | 55.000 | 0.00 | 0.0 | 45.32 | 3.16 | R |
2940 | 4228 | 0.394352 | GTTGGTTCCATCGGGCATCT | 60.394 | 55.000 | 0.00 | 0.0 | 0.00 | 2.90 | R |
3189 | 4480 | 0.970640 | TCACTGCTGCTAACGGGTTA | 59.029 | 50.000 | 0.00 | 0.0 | 0.00 | 2.85 | R |
3641 | 6978 | 1.274728 | GCAGACCATCTATCCTCGCAT | 59.725 | 52.381 | 0.00 | 0.0 | 0.00 | 4.73 | R |
5015 | 8423 | 0.249238 | ACAAGATCGATCGCCTCTGC | 60.249 | 55.000 | 19.33 | 0.0 | 0.00 | 4.26 | R |
5825 | 11494 | 0.112995 | AGATTGCAAACCTGGGCTGA | 59.887 | 50.000 | 1.71 | 0.0 | 0.00 | 4.26 | R |
5939 | 11653 | 1.422531 | AAGCCTTTCCAAACATGGCA | 58.577 | 45.000 | 0.00 | 0.0 | 45.42 | 4.92 | R |
6390 | 12163 | 0.663153 | ACTCAAGAACAACCAAGCGC | 59.337 | 50.000 | 0.00 | 0.0 | 0.00 | 5.92 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
94 | 115 | 5.975693 | AAGTAAAAATTGCCAAGATCCGA | 57.024 | 34.783 | 0.00 | 0.00 | 0.00 | 4.55 |
178 | 199 | 2.290768 | ACCAGTTGAGTACGCCTCTCTA | 60.291 | 50.000 | 4.55 | 0.00 | 41.11 | 2.43 |
288 | 311 | 2.903784 | ACTACTGACAGGCCACACATAA | 59.096 | 45.455 | 5.01 | 0.00 | 0.00 | 1.90 |
446 | 477 | 7.689299 | TCCTTAACTGGCTATGCATTGTATAT | 58.311 | 34.615 | 3.54 | 0.00 | 0.00 | 0.86 |
701 | 751 | 2.580815 | CAGGTCTCTGCGCCATGA | 59.419 | 61.111 | 4.18 | 0.00 | 33.86 | 3.07 |
702 | 752 | 1.521010 | CAGGTCTCTGCGCCATGAG | 60.521 | 63.158 | 4.18 | 10.39 | 33.86 | 2.90 |
703 | 753 | 2.894387 | GGTCTCTGCGCCATGAGC | 60.894 | 66.667 | 4.18 | 5.99 | 38.52 | 4.26 |
712 | 762 | 2.944429 | GCCATGAGCGCTGCTATG | 59.056 | 61.111 | 18.48 | 16.37 | 39.88 | 2.23 |
713 | 763 | 2.944429 | CCATGAGCGCTGCTATGC | 59.056 | 61.111 | 18.48 | 0.00 | 39.88 | 3.14 |
714 | 764 | 1.890510 | CCATGAGCGCTGCTATGCA | 60.891 | 57.895 | 18.48 | 5.44 | 39.88 | 3.96 |
715 | 765 | 1.278937 | CATGAGCGCTGCTATGCAC | 59.721 | 57.895 | 18.48 | 0.00 | 39.88 | 4.57 |
716 | 766 | 1.153309 | ATGAGCGCTGCTATGCACA | 60.153 | 52.632 | 18.48 | 3.57 | 39.88 | 4.57 |
717 | 767 | 1.434622 | ATGAGCGCTGCTATGCACAC | 61.435 | 55.000 | 18.48 | 0.00 | 39.88 | 3.82 |
718 | 768 | 3.147889 | GAGCGCTGCTATGCACACG | 62.148 | 63.158 | 18.48 | 6.04 | 39.88 | 4.49 |
719 | 769 | 3.188100 | GCGCTGCTATGCACACGA | 61.188 | 61.111 | 0.00 | 0.00 | 35.80 | 4.35 |
720 | 770 | 2.697425 | CGCTGCTATGCACACGAC | 59.303 | 61.111 | 0.00 | 0.00 | 35.80 | 4.34 |
721 | 771 | 2.697425 | GCTGCTATGCACACGACG | 59.303 | 61.111 | 0.00 | 0.00 | 33.79 | 5.12 |
722 | 772 | 2.697425 | CTGCTATGCACACGACGC | 59.303 | 61.111 | 0.00 | 0.00 | 33.79 | 5.19 |
723 | 773 | 2.048690 | TGCTATGCACACGACGCA | 60.049 | 55.556 | 0.00 | 0.00 | 44.94 | 5.24 |
728 | 778 | 2.048690 | TGCACACGACGCATAGCA | 60.049 | 55.556 | 0.00 | 0.00 | 33.55 | 3.49 |
729 | 779 | 2.094066 | TGCACACGACGCATAGCAG | 61.094 | 57.895 | 0.00 | 0.00 | 33.55 | 4.24 |
730 | 780 | 1.805539 | GCACACGACGCATAGCAGA | 60.806 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
731 | 781 | 1.991430 | CACACGACGCATAGCAGAC | 59.009 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
732 | 782 | 1.514228 | ACACGACGCATAGCAGACG | 60.514 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
733 | 783 | 1.226295 | CACGACGCATAGCAGACGA | 60.226 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
734 | 784 | 0.592500 | CACGACGCATAGCAGACGAT | 60.593 | 55.000 | 0.00 | 0.00 | 0.00 | 3.73 |
735 | 785 | 0.100682 | ACGACGCATAGCAGACGATT | 59.899 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
736 | 786 | 1.200483 | CGACGCATAGCAGACGATTT | 58.800 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
737 | 787 | 1.071894 | CGACGCATAGCAGACGATTTG | 60.072 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
738 | 788 | 1.927174 | GACGCATAGCAGACGATTTGT | 59.073 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
739 | 789 | 1.660607 | ACGCATAGCAGACGATTTGTG | 59.339 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
740 | 790 | 1.593070 | CGCATAGCAGACGATTTGTGC | 60.593 | 52.381 | 0.00 | 0.00 | 37.48 | 4.57 |
741 | 791 | 1.398041 | GCATAGCAGACGATTTGTGCA | 59.602 | 47.619 | 0.00 | 0.00 | 39.80 | 4.57 |
742 | 792 | 2.789092 | GCATAGCAGACGATTTGTGCAC | 60.789 | 50.000 | 10.75 | 10.75 | 39.80 | 4.57 |
743 | 793 | 1.067693 | TAGCAGACGATTTGTGCACG | 58.932 | 50.000 | 13.13 | 1.70 | 39.80 | 5.34 |
744 | 794 | 0.599991 | AGCAGACGATTTGTGCACGA | 60.600 | 50.000 | 13.13 | 7.71 | 39.80 | 4.35 |
745 | 795 | 0.443869 | GCAGACGATTTGTGCACGAT | 59.556 | 50.000 | 13.13 | 8.85 | 37.16 | 3.73 |
746 | 796 | 1.658596 | GCAGACGATTTGTGCACGATA | 59.341 | 47.619 | 13.13 | 0.00 | 37.16 | 2.92 |
747 | 797 | 2.285256 | GCAGACGATTTGTGCACGATAG | 60.285 | 50.000 | 13.13 | 11.37 | 37.16 | 2.08 |
748 | 798 | 2.282555 | CAGACGATTTGTGCACGATAGG | 59.717 | 50.000 | 13.13 | 4.89 | 43.77 | 2.57 |
759 | 809 | 1.996292 | CACGATAGGGCATATCCGTG | 58.004 | 55.000 | 20.59 | 20.59 | 37.58 | 4.94 |
760 | 810 | 0.246635 | ACGATAGGGCATATCCGTGC | 59.753 | 55.000 | 13.06 | 0.00 | 41.59 | 5.34 |
761 | 811 | 0.802222 | CGATAGGGCATATCCGTGCG | 60.802 | 60.000 | 13.06 | 0.00 | 45.97 | 5.34 |
762 | 812 | 0.246635 | GATAGGGCATATCCGTGCGT | 59.753 | 55.000 | 7.93 | 0.00 | 45.97 | 5.24 |
763 | 813 | 0.246635 | ATAGGGCATATCCGTGCGTC | 59.753 | 55.000 | 0.00 | 0.00 | 45.97 | 5.19 |
764 | 814 | 1.812686 | TAGGGCATATCCGTGCGTCC | 61.813 | 60.000 | 0.00 | 0.00 | 45.97 | 4.79 |
765 | 815 | 3.036084 | GGCATATCCGTGCGTCCG | 61.036 | 66.667 | 0.00 | 0.00 | 45.97 | 4.79 |
766 | 816 | 2.279252 | GCATATCCGTGCGTCCGT | 60.279 | 61.111 | 0.00 | 0.00 | 35.10 | 4.69 |
767 | 817 | 2.585869 | GCATATCCGTGCGTCCGTG | 61.586 | 63.158 | 0.00 | 0.00 | 35.10 | 4.94 |
768 | 818 | 2.279252 | ATATCCGTGCGTCCGTGC | 60.279 | 61.111 | 0.00 | 0.00 | 0.00 | 5.34 |
769 | 819 | 3.071232 | ATATCCGTGCGTCCGTGCA | 62.071 | 57.895 | 0.00 | 0.00 | 43.95 | 4.57 |
777 | 827 | 2.517650 | TGCGTCCGTGCATATTATCA | 57.482 | 45.000 | 0.00 | 0.00 | 40.62 | 2.15 |
778 | 828 | 2.827652 | TGCGTCCGTGCATATTATCAA | 58.172 | 42.857 | 0.00 | 0.00 | 40.62 | 2.57 |
779 | 829 | 3.198872 | TGCGTCCGTGCATATTATCAAA | 58.801 | 40.909 | 0.00 | 0.00 | 40.62 | 2.69 |
780 | 830 | 3.247411 | TGCGTCCGTGCATATTATCAAAG | 59.753 | 43.478 | 0.00 | 0.00 | 40.62 | 2.77 |
781 | 831 | 3.247648 | GCGTCCGTGCATATTATCAAAGT | 59.752 | 43.478 | 0.00 | 0.00 | 34.15 | 2.66 |
782 | 832 | 4.761745 | CGTCCGTGCATATTATCAAAGTG | 58.238 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
783 | 833 | 4.527564 | GTCCGTGCATATTATCAAAGTGC | 58.472 | 43.478 | 0.00 | 0.00 | 36.39 | 4.40 |
784 | 834 | 4.035091 | GTCCGTGCATATTATCAAAGTGCA | 59.965 | 41.667 | 0.00 | 0.00 | 42.86 | 4.57 |
785 | 835 | 4.273235 | TCCGTGCATATTATCAAAGTGCAG | 59.727 | 41.667 | 0.00 | 0.00 | 45.32 | 4.41 |
786 | 836 | 3.970610 | CGTGCATATTATCAAAGTGCAGC | 59.029 | 43.478 | 0.00 | 0.00 | 45.32 | 5.25 |
787 | 837 | 4.496175 | CGTGCATATTATCAAAGTGCAGCA | 60.496 | 41.667 | 0.00 | 0.00 | 45.32 | 4.41 |
788 | 838 | 4.974275 | GTGCATATTATCAAAGTGCAGCAG | 59.026 | 41.667 | 0.00 | 0.00 | 45.32 | 4.24 |
789 | 839 | 4.883006 | TGCATATTATCAAAGTGCAGCAGA | 59.117 | 37.500 | 0.00 | 0.00 | 40.51 | 4.26 |
790 | 840 | 5.210715 | GCATATTATCAAAGTGCAGCAGAC | 58.789 | 41.667 | 0.00 | 0.00 | 35.93 | 3.51 |
791 | 841 | 5.438117 | CATATTATCAAAGTGCAGCAGACG | 58.562 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
792 | 842 | 1.725641 | TATCAAAGTGCAGCAGACGG | 58.274 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
793 | 843 | 1.580845 | ATCAAAGTGCAGCAGACGGC | 61.581 | 55.000 | 0.00 | 0.00 | 45.30 | 5.68 |
805 | 855 | 3.868888 | GCAGACGGCTAGATGAAAATC | 57.131 | 47.619 | 0.00 | 0.00 | 40.25 | 2.17 |
806 | 856 | 2.219674 | GCAGACGGCTAGATGAAAATCG | 59.780 | 50.000 | 0.00 | 0.00 | 40.25 | 3.34 |
807 | 857 | 3.448686 | CAGACGGCTAGATGAAAATCGT | 58.551 | 45.455 | 0.00 | 0.00 | 0.00 | 3.73 |
808 | 858 | 3.243877 | CAGACGGCTAGATGAAAATCGTG | 59.756 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
809 | 859 | 1.933853 | ACGGCTAGATGAAAATCGTGC | 59.066 | 47.619 | 0.00 | 0.00 | 0.00 | 5.34 |
810 | 860 | 1.933181 | CGGCTAGATGAAAATCGTGCA | 59.067 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
811 | 861 | 2.285834 | CGGCTAGATGAAAATCGTGCAC | 60.286 | 50.000 | 6.82 | 6.82 | 0.00 | 4.57 |
812 | 862 | 2.032178 | GGCTAGATGAAAATCGTGCACC | 59.968 | 50.000 | 12.15 | 0.00 | 0.00 | 5.01 |
813 | 863 | 2.939103 | GCTAGATGAAAATCGTGCACCT | 59.061 | 45.455 | 12.15 | 1.30 | 0.00 | 4.00 |
814 | 864 | 3.242543 | GCTAGATGAAAATCGTGCACCTG | 60.243 | 47.826 | 12.15 | 0.00 | 0.00 | 4.00 |
815 | 865 | 2.783135 | AGATGAAAATCGTGCACCTGT | 58.217 | 42.857 | 12.15 | 0.00 | 0.00 | 4.00 |
816 | 866 | 2.744202 | AGATGAAAATCGTGCACCTGTC | 59.256 | 45.455 | 12.15 | 1.33 | 0.00 | 3.51 |
817 | 867 | 0.865111 | TGAAAATCGTGCACCTGTCG | 59.135 | 50.000 | 12.15 | 0.00 | 0.00 | 4.35 |
818 | 868 | 0.865769 | GAAAATCGTGCACCTGTCGT | 59.134 | 50.000 | 12.15 | 0.00 | 0.00 | 4.34 |
819 | 869 | 0.865769 | AAAATCGTGCACCTGTCGTC | 59.134 | 50.000 | 12.15 | 0.00 | 0.00 | 4.20 |
820 | 870 | 0.949105 | AAATCGTGCACCTGTCGTCC | 60.949 | 55.000 | 12.15 | 0.00 | 0.00 | 4.79 |
821 | 871 | 2.094757 | AATCGTGCACCTGTCGTCCA | 62.095 | 55.000 | 12.15 | 0.00 | 0.00 | 4.02 |
822 | 872 | 1.888436 | ATCGTGCACCTGTCGTCCAT | 61.888 | 55.000 | 12.15 | 0.00 | 0.00 | 3.41 |
823 | 873 | 2.382746 | CGTGCACCTGTCGTCCATG | 61.383 | 63.158 | 12.15 | 0.00 | 0.00 | 3.66 |
824 | 874 | 2.034879 | GTGCACCTGTCGTCCATGG | 61.035 | 63.158 | 4.97 | 4.97 | 0.00 | 3.66 |
825 | 875 | 2.213513 | TGCACCTGTCGTCCATGGA | 61.214 | 57.895 | 11.44 | 11.44 | 0.00 | 3.41 |
826 | 876 | 1.448540 | GCACCTGTCGTCCATGGAG | 60.449 | 63.158 | 16.81 | 9.76 | 0.00 | 3.86 |
827 | 877 | 1.975327 | CACCTGTCGTCCATGGAGT | 59.025 | 57.895 | 16.81 | 5.34 | 0.00 | 3.85 |
828 | 878 | 0.390340 | CACCTGTCGTCCATGGAGTG | 60.390 | 60.000 | 16.81 | 14.68 | 0.00 | 3.51 |
829 | 879 | 1.448540 | CCTGTCGTCCATGGAGTGC | 60.449 | 63.158 | 16.81 | 8.53 | 0.00 | 4.40 |
830 | 880 | 1.293179 | CTGTCGTCCATGGAGTGCA | 59.707 | 57.895 | 16.81 | 12.81 | 0.00 | 4.57 |
831 | 881 | 0.107993 | CTGTCGTCCATGGAGTGCAT | 60.108 | 55.000 | 16.81 | 0.00 | 0.00 | 3.96 |
832 | 882 | 0.108186 | TGTCGTCCATGGAGTGCATC | 60.108 | 55.000 | 16.81 | 0.49 | 0.00 | 3.91 |
833 | 883 | 1.141665 | TCGTCCATGGAGTGCATCG | 59.858 | 57.895 | 16.81 | 14.28 | 0.00 | 3.84 |
834 | 884 | 1.153568 | CGTCCATGGAGTGCATCGT | 60.154 | 57.895 | 16.81 | 0.00 | 0.00 | 3.73 |
835 | 885 | 1.148157 | CGTCCATGGAGTGCATCGTC | 61.148 | 60.000 | 16.81 | 0.00 | 0.00 | 4.20 |
836 | 886 | 0.176680 | GTCCATGGAGTGCATCGTCT | 59.823 | 55.000 | 16.81 | 0.00 | 0.00 | 4.18 |
837 | 887 | 0.176449 | TCCATGGAGTGCATCGTCTG | 59.824 | 55.000 | 11.44 | 0.00 | 0.00 | 3.51 |
849 | 899 | 3.582444 | CATCGTCTGCATAGCTGTTTC | 57.418 | 47.619 | 0.00 | 0.00 | 0.00 | 2.78 |
850 | 900 | 1.629013 | TCGTCTGCATAGCTGTTTCG | 58.371 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
851 | 901 | 0.025513 | CGTCTGCATAGCTGTTTCGC | 59.974 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
852 | 902 | 1.363744 | GTCTGCATAGCTGTTTCGCT | 58.636 | 50.000 | 0.00 | 0.00 | 43.83 | 4.93 |
853 | 903 | 1.061711 | GTCTGCATAGCTGTTTCGCTG | 59.938 | 52.381 | 0.00 | 0.00 | 41.12 | 5.18 |
854 | 904 | 0.247974 | CTGCATAGCTGTTTCGCTGC | 60.248 | 55.000 | 0.00 | 0.00 | 41.12 | 5.25 |
855 | 905 | 1.297158 | GCATAGCTGTTTCGCTGCG | 60.297 | 57.895 | 17.25 | 17.25 | 45.21 | 5.18 |
856 | 906 | 1.297158 | CATAGCTGTTTCGCTGCGC | 60.297 | 57.895 | 18.65 | 0.00 | 45.21 | 6.09 |
857 | 907 | 2.464459 | ATAGCTGTTTCGCTGCGCC | 61.464 | 57.895 | 18.65 | 8.16 | 45.21 | 6.53 |
858 | 908 | 3.874807 | TAGCTGTTTCGCTGCGCCA | 62.875 | 57.895 | 18.65 | 12.39 | 45.21 | 5.69 |
859 | 909 | 4.107051 | GCTGTTTCGCTGCGCCAT | 62.107 | 61.111 | 18.65 | 0.00 | 32.54 | 4.40 |
860 | 910 | 2.562912 | CTGTTTCGCTGCGCCATT | 59.437 | 55.556 | 18.65 | 0.00 | 0.00 | 3.16 |
861 | 911 | 1.081242 | CTGTTTCGCTGCGCCATTT | 60.081 | 52.632 | 18.65 | 0.00 | 0.00 | 2.32 |
862 | 912 | 1.339235 | CTGTTTCGCTGCGCCATTTG | 61.339 | 55.000 | 18.65 | 1.89 | 0.00 | 2.32 |
863 | 913 | 1.081509 | GTTTCGCTGCGCCATTTGA | 60.082 | 52.632 | 18.65 | 0.00 | 0.00 | 2.69 |
864 | 914 | 1.081509 | TTTCGCTGCGCCATTTGAC | 60.082 | 52.632 | 18.65 | 0.00 | 0.00 | 3.18 |
865 | 915 | 2.470801 | TTTCGCTGCGCCATTTGACC | 62.471 | 55.000 | 18.65 | 0.00 | 0.00 | 4.02 |
866 | 916 | 4.481112 | CGCTGCGCCATTTGACCC | 62.481 | 66.667 | 9.88 | 0.00 | 0.00 | 4.46 |
867 | 917 | 3.372730 | GCTGCGCCATTTGACCCA | 61.373 | 61.111 | 4.18 | 0.00 | 0.00 | 4.51 |
868 | 918 | 2.929903 | GCTGCGCCATTTGACCCAA | 61.930 | 57.895 | 4.18 | 0.00 | 0.00 | 4.12 |
869 | 919 | 1.080569 | CTGCGCCATTTGACCCAAC | 60.081 | 57.895 | 4.18 | 0.00 | 0.00 | 3.77 |
870 | 920 | 2.126502 | GCGCCATTTGACCCAACG | 60.127 | 61.111 | 0.00 | 0.00 | 0.00 | 4.10 |
871 | 921 | 2.566010 | CGCCATTTGACCCAACGG | 59.434 | 61.111 | 0.00 | 0.00 | 0.00 | 4.44 |
872 | 922 | 1.969064 | CGCCATTTGACCCAACGGA | 60.969 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
873 | 923 | 1.312371 | CGCCATTTGACCCAACGGAT | 61.312 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
874 | 924 | 0.455815 | GCCATTTGACCCAACGGATC | 59.544 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
875 | 925 | 1.832883 | CCATTTGACCCAACGGATCA | 58.167 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
876 | 926 | 2.166829 | CCATTTGACCCAACGGATCAA | 58.833 | 47.619 | 0.00 | 0.00 | 31.45 | 2.57 |
877 | 927 | 2.094752 | CCATTTGACCCAACGGATCAAC | 60.095 | 50.000 | 0.00 | 0.00 | 32.41 | 3.18 |
878 | 928 | 2.649531 | TTTGACCCAACGGATCAACT | 57.350 | 45.000 | 0.00 | 0.00 | 32.41 | 3.16 |
879 | 929 | 1.890876 | TTGACCCAACGGATCAACTG | 58.109 | 50.000 | 0.00 | 0.00 | 29.59 | 3.16 |
880 | 930 | 0.036164 | TGACCCAACGGATCAACTGG | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
881 | 931 | 0.036306 | GACCCAACGGATCAACTGGT | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
882 | 932 | 0.476771 | ACCCAACGGATCAACTGGTT | 59.523 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
901 | 951 | 6.942576 | ACTGGTTGTATATTGTTTCTGCTCTT | 59.057 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
926 | 976 | 4.200283 | GCTCCCCACTCTCGAGCG | 62.200 | 72.222 | 7.81 | 3.64 | 39.64 | 5.03 |
927 | 977 | 2.438614 | CTCCCCACTCTCGAGCGA | 60.439 | 66.667 | 9.87 | 0.00 | 0.00 | 4.93 |
929 | 979 | 3.827898 | CCCCACTCTCGAGCGACC | 61.828 | 72.222 | 9.87 | 0.00 | 0.00 | 4.79 |
930 | 980 | 3.827898 | CCCACTCTCGAGCGACCC | 61.828 | 72.222 | 9.87 | 0.00 | 0.00 | 4.46 |
932 | 982 | 3.827898 | CACTCTCGAGCGACCCCC | 61.828 | 72.222 | 9.87 | 0.00 | 0.00 | 5.40 |
986 | 1036 | 0.179000 | ACCATCTCCAGCGAACATCC | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1041 | 1091 | 3.056628 | GGTTGAGACCATCTCTGCG | 57.943 | 57.895 | 7.33 | 0.00 | 45.77 | 5.18 |
1086 | 1136 | 1.079127 | CTGGATTCGGCAAGTCGGT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
1123 | 1173 | 1.754226 | AGAAGCTCAAGTCGGAGATCC | 59.246 | 52.381 | 0.00 | 0.00 | 40.67 | 3.36 |
1189 | 1268 | 2.894387 | GCGAGCTGCTGGATGGAC | 60.894 | 66.667 | 16.17 | 0.00 | 41.73 | 4.02 |
1284 | 1397 | 1.672356 | CCAAGTCCAAGGTCTGCCG | 60.672 | 63.158 | 0.00 | 0.00 | 40.50 | 5.69 |
1287 | 1400 | 4.329545 | GTCCAAGGTCTGCCGGCA | 62.330 | 66.667 | 30.59 | 30.59 | 40.50 | 5.69 |
1307 | 1420 | 2.124983 | TGCAGATCCAAGCGAGCC | 60.125 | 61.111 | 0.00 | 0.00 | 0.00 | 4.70 |
1311 | 1424 | 0.809241 | CAGATCCAAGCGAGCCAGTC | 60.809 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1314 | 1427 | 4.020617 | CCAAGCGAGCCAGTCCCA | 62.021 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
1315 | 1428 | 2.743928 | CAAGCGAGCCAGTCCCAC | 60.744 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
1316 | 1429 | 2.925170 | AAGCGAGCCAGTCCCACT | 60.925 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
1318 | 1431 | 4.459089 | GCGAGCCAGTCCCACTCC | 62.459 | 72.222 | 0.00 | 0.00 | 0.00 | 3.85 |
1319 | 1432 | 3.775654 | CGAGCCAGTCCCACTCCC | 61.776 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1320 | 1433 | 2.607750 | GAGCCAGTCCCACTCCCA | 60.608 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
1325 | 1444 | 2.122954 | AGTCCCACTCCCAGTCCC | 59.877 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
1350 | 1469 | 5.299782 | AGGAGGTAAGCGTAAATCTGTCTAG | 59.700 | 44.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1357 | 1476 | 4.113354 | GCGTAAATCTGTCTAGACCCAAG | 58.887 | 47.826 | 20.11 | 11.01 | 35.34 | 3.61 |
1407 | 1540 | 8.437742 | GTTTGATCTTATGTTGCTCCAAAAATG | 58.562 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1438 | 2226 | 2.602456 | CGTATCTGATCAAGGACGACCG | 60.602 | 54.545 | 14.54 | 3.70 | 41.83 | 4.79 |
1539 | 2348 | 0.898320 | AATGAGATATCGAGGGGCGG | 59.102 | 55.000 | 0.00 | 0.00 | 41.33 | 6.13 |
1547 | 2362 | 4.838152 | CGAGGGGCGGTGGTGATG | 62.838 | 72.222 | 0.00 | 0.00 | 36.03 | 3.07 |
1633 | 2460 | 4.760204 | AGAGATAACGGAAAACCCAACAAG | 59.240 | 41.667 | 0.00 | 0.00 | 34.14 | 3.16 |
1672 | 2504 | 6.202954 | ACTGTAGCAATGAGTTTAAGTGTGAC | 59.797 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
1675 | 2507 | 4.275936 | AGCAATGAGTTTAAGTGTGACACC | 59.724 | 41.667 | 12.81 | 0.00 | 34.49 | 4.16 |
1761 | 2593 | 1.280421 | GAAACCTCCTGGAGCACATCT | 59.720 | 52.381 | 18.51 | 0.00 | 37.04 | 2.90 |
1884 | 2827 | 0.321564 | TTGAGGCGATTGTGGTCCTG | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1893 | 2836 | 5.049405 | GGCGATTGTGGTCCTGATTAATAAG | 60.049 | 44.000 | 0.00 | 0.00 | 0.00 | 1.73 |
1895 | 2838 | 5.527214 | CGATTGTGGTCCTGATTAATAAGCA | 59.473 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1896 | 2839 | 6.511767 | CGATTGTGGTCCTGATTAATAAGCAC | 60.512 | 42.308 | 11.81 | 11.81 | 38.48 | 4.40 |
1899 | 2842 | 5.822519 | TGTGGTCCTGATTAATAAGCACATC | 59.177 | 40.000 | 15.13 | 2.39 | 41.73 | 3.06 |
1900 | 2843 | 5.239525 | GTGGTCCTGATTAATAAGCACATCC | 59.760 | 44.000 | 13.01 | 0.00 | 38.04 | 3.51 |
1902 | 2845 | 4.762251 | GTCCTGATTAATAAGCACATCCCC | 59.238 | 45.833 | 0.00 | 0.00 | 0.00 | 4.81 |
1903 | 2846 | 4.082125 | CCTGATTAATAAGCACATCCCCC | 58.918 | 47.826 | 0.00 | 0.00 | 0.00 | 5.40 |
1904 | 2847 | 3.750371 | TGATTAATAAGCACATCCCCCG | 58.250 | 45.455 | 0.00 | 0.00 | 0.00 | 5.73 |
1905 | 2848 | 1.975660 | TTAATAAGCACATCCCCCGC | 58.024 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1906 | 2849 | 0.840617 | TAATAAGCACATCCCCCGCA | 59.159 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1907 | 2850 | 0.033601 | AATAAGCACATCCCCCGCAA | 60.034 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1908 | 2851 | 0.033601 | ATAAGCACATCCCCCGCAAA | 60.034 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1909 | 2852 | 0.251386 | TAAGCACATCCCCCGCAAAA | 60.251 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
1910 | 2853 | 0.904394 | AAGCACATCCCCCGCAAAAT | 60.904 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1911 | 2854 | 0.033601 | AGCACATCCCCCGCAAAATA | 60.034 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1912 | 2855 | 0.820871 | GCACATCCCCCGCAAAATAA | 59.179 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1913 | 2856 | 1.205893 | GCACATCCCCCGCAAAATAAA | 59.794 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
1914 | 2857 | 2.158971 | GCACATCCCCCGCAAAATAAAT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
1915 | 2858 | 3.068873 | GCACATCCCCCGCAAAATAAATA | 59.931 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
1916 | 2859 | 4.442192 | GCACATCCCCCGCAAAATAAATAA | 60.442 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
1917 | 2860 | 5.665459 | CACATCCCCCGCAAAATAAATAAA | 58.335 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
1918 | 2861 | 6.287525 | CACATCCCCCGCAAAATAAATAAAT | 58.712 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1919 | 2862 | 7.437748 | CACATCCCCCGCAAAATAAATAAATA | 58.562 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
1920 | 2863 | 7.383843 | CACATCCCCCGCAAAATAAATAAATAC | 59.616 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
1921 | 2864 | 6.074544 | TCCCCCGCAAAATAAATAAATACG | 57.925 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
1922 | 2865 | 4.682401 | CCCCCGCAAAATAAATAAATACGC | 59.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.42 |
1923 | 2866 | 5.282510 | CCCCGCAAAATAAATAAATACGCA | 58.717 | 37.500 | 0.00 | 0.00 | 0.00 | 5.24 |
1929 | 2872 | 7.431084 | CGCAAAATAAATAAATACGCACCTCTT | 59.569 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
1961 | 2904 | 1.000019 | AGCACCGGTGAGCCTACTA | 60.000 | 57.895 | 38.30 | 0.00 | 0.00 | 1.82 |
2081 | 3030 | 4.442706 | AGCAAGATGTAAATACTGTCCCG | 58.557 | 43.478 | 0.00 | 0.00 | 0.00 | 5.14 |
2098 | 3047 | 3.096791 | GCAGAGATCAAGTGCGGC | 58.903 | 61.111 | 0.00 | 0.00 | 0.00 | 6.53 |
2104 | 3053 | 1.971167 | GATCAAGTGCGGCCCAACA | 60.971 | 57.895 | 0.00 | 0.00 | 0.00 | 3.33 |
2172 | 3275 | 1.499007 | ACCTGGACCAAATGACCAGTT | 59.501 | 47.619 | 18.10 | 7.78 | 46.61 | 3.16 |
2221 | 3325 | 7.399523 | AGAATCTATATGTTGCGTCGAAAAAC | 58.600 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
2222 | 3326 | 6.656314 | ATCTATATGTTGCGTCGAAAAACA | 57.344 | 33.333 | 10.22 | 10.22 | 38.13 | 2.83 |
2266 | 3422 | 7.726033 | AGAGTCTCATTGTGGTTCTAATAGT | 57.274 | 36.000 | 1.94 | 0.00 | 0.00 | 2.12 |
2276 | 3439 | 8.836268 | TTGTGGTTCTAATAGTCAATTAACGT | 57.164 | 30.769 | 0.00 | 0.00 | 29.59 | 3.99 |
2277 | 3440 | 8.836268 | TGTGGTTCTAATAGTCAATTAACGTT | 57.164 | 30.769 | 5.88 | 5.88 | 29.59 | 3.99 |
2278 | 3441 | 8.928733 | TGTGGTTCTAATAGTCAATTAACGTTC | 58.071 | 33.333 | 2.82 | 0.00 | 29.59 | 3.95 |
2334 | 3580 | 4.055360 | CGGATGTGACGCCAATTCTAATA | 58.945 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
2337 | 3583 | 4.481368 | TGTGACGCCAATTCTAATAGGT | 57.519 | 40.909 | 0.00 | 0.00 | 0.00 | 3.08 |
2338 | 3584 | 5.601583 | TGTGACGCCAATTCTAATAGGTA | 57.398 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
2358 | 3604 | 0.396811 | ACTCGTCCACCAGAAAAGGG | 59.603 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2362 | 3608 | 1.071699 | CGTCCACCAGAAAAGGGAGAA | 59.928 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
2370 | 3616 | 4.231426 | ACCAGAAAAGGGAGAATGGATGAT | 59.769 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
2389 | 3635 | 7.944061 | GGATGATTCCATACAAATTGATGTGA | 58.056 | 34.615 | 0.00 | 0.00 | 42.12 | 3.58 |
2429 | 3678 | 2.154462 | GGACATGGCCGAATTATCCAG | 58.846 | 52.381 | 0.00 | 0.00 | 32.78 | 3.86 |
2471 | 3720 | 4.910195 | AGTCAGTTGCAATACATCCAAGA | 58.090 | 39.130 | 0.59 | 0.00 | 0.00 | 3.02 |
2525 | 3801 | 4.395625 | TCGGACTCTACTTCAAGTTCAGA | 58.604 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
2526 | 3802 | 5.010933 | TCGGACTCTACTTCAAGTTCAGAT | 58.989 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2527 | 3803 | 5.124138 | TCGGACTCTACTTCAAGTTCAGATC | 59.876 | 44.000 | 0.00 | 0.00 | 0.00 | 2.75 |
2528 | 3804 | 5.106118 | CGGACTCTACTTCAAGTTCAGATCA | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2529 | 3805 | 6.405286 | CGGACTCTACTTCAAGTTCAGATCAT | 60.405 | 42.308 | 0.00 | 0.00 | 0.00 | 2.45 |
2530 | 3806 | 6.978080 | GGACTCTACTTCAAGTTCAGATCATC | 59.022 | 42.308 | 0.00 | 0.00 | 0.00 | 2.92 |
2531 | 3807 | 7.363355 | GGACTCTACTTCAAGTTCAGATCATCA | 60.363 | 40.741 | 0.00 | 0.00 | 0.00 | 3.07 |
2532 | 3808 | 7.319646 | ACTCTACTTCAAGTTCAGATCATCAC | 58.680 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
2533 | 3809 | 6.634805 | TCTACTTCAAGTTCAGATCATCACC | 58.365 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2534 | 3810 | 5.233083 | ACTTCAAGTTCAGATCATCACCA | 57.767 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
2535 | 3811 | 5.243981 | ACTTCAAGTTCAGATCATCACCAG | 58.756 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
2536 | 3812 | 5.012458 | ACTTCAAGTTCAGATCATCACCAGA | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2537 | 3813 | 5.082251 | TCAAGTTCAGATCATCACCAGAG | 57.918 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
2538 | 3814 | 4.529769 | TCAAGTTCAGATCATCACCAGAGT | 59.470 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
2539 | 3815 | 5.716703 | TCAAGTTCAGATCATCACCAGAGTA | 59.283 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2540 | 3816 | 5.590530 | AGTTCAGATCATCACCAGAGTAC | 57.409 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
2541 | 3817 | 5.019470 | AGTTCAGATCATCACCAGAGTACA | 58.981 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2542 | 3818 | 5.481824 | AGTTCAGATCATCACCAGAGTACAA | 59.518 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2543 | 3819 | 5.330455 | TCAGATCATCACCAGAGTACAAC | 57.670 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
2544 | 3820 | 4.772100 | TCAGATCATCACCAGAGTACAACA | 59.228 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
2545 | 3821 | 5.423290 | TCAGATCATCACCAGAGTACAACAT | 59.577 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2546 | 3822 | 5.752472 | CAGATCATCACCAGAGTACAACATC | 59.248 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2547 | 3823 | 5.423290 | AGATCATCACCAGAGTACAACATCA | 59.577 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2548 | 3824 | 5.682234 | TCATCACCAGAGTACAACATCAT | 57.318 | 39.130 | 0.00 | 0.00 | 0.00 | 2.45 |
2724 | 4006 | 5.109903 | ACTCTCACTCAACTTGTGTACAAC | 58.890 | 41.667 | 0.00 | 0.00 | 36.83 | 3.32 |
2751 | 4033 | 4.947645 | CAGAAGTGGAAAGGCAATTTGAA | 58.052 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
2808 | 4090 | 2.309755 | TGAAATGAGGCTCACAAGGGAT | 59.690 | 45.455 | 21.37 | 0.00 | 0.00 | 3.85 |
2812 | 4094 | 1.141657 | TGAGGCTCACAAGGGATATGC | 59.858 | 52.381 | 14.43 | 0.00 | 0.00 | 3.14 |
2835 | 4117 | 5.449725 | GCTGAGCTTTGTTTCTCAAGAAAGT | 60.450 | 40.000 | 5.45 | 0.00 | 42.62 | 2.66 |
2858 | 4140 | 2.726821 | TGAAGGAATAGGCTGCTTTGG | 58.273 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
2875 | 4157 | 1.207791 | TGGGAAGCTTCAGGAGATCC | 58.792 | 55.000 | 27.02 | 16.99 | 34.08 | 3.36 |
2944 | 4235 | 8.667076 | TGATGTATGGTATGACAAGAAAGATG | 57.333 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
2945 | 4236 | 6.925610 | TGTATGGTATGACAAGAAAGATGC | 57.074 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
2988 | 4279 | 2.172717 | TCCCTTTAAGCCTCATAGTGCC | 59.827 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3025 | 4316 | 9.119418 | TGATTCTTGTGACAACTAGAAAAATGA | 57.881 | 29.630 | 0.00 | 0.00 | 46.45 | 2.57 |
3053 | 4344 | 4.141756 | TGCAAAAATGATTGGAACAGTGGT | 60.142 | 37.500 | 0.00 | 0.00 | 42.39 | 4.16 |
3068 | 4359 | 3.506067 | ACAGTGGTGCCAATTAAGTTAGC | 59.494 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
3070 | 4361 | 4.941263 | CAGTGGTGCCAATTAAGTTAGCTA | 59.059 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
3073 | 4364 | 6.070424 | AGTGGTGCCAATTAAGTTAGCTACTA | 60.070 | 38.462 | 0.00 | 0.00 | 35.54 | 1.82 |
3075 | 4366 | 7.282450 | GTGGTGCCAATTAAGTTAGCTACTATT | 59.718 | 37.037 | 0.00 | 0.00 | 35.54 | 1.73 |
3114 | 4405 | 9.941325 | TTTTGGTTATTATTCAAATCATGTGCT | 57.059 | 25.926 | 0.00 | 0.00 | 31.60 | 4.40 |
3189 | 4480 | 6.455647 | GCAAATAGCAGAAAAGTTAAAGGGT | 58.544 | 36.000 | 0.00 | 0.00 | 44.79 | 4.34 |
3207 | 4498 | 1.076332 | GTAACCCGTTAGCAGCAGTG | 58.924 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
3231 | 4522 | 3.646736 | ACAGGGGCACTATTAAGGAAC | 57.353 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
3258 | 4549 | 6.469410 | ACTTACCGTTGATCATTGGAGTAAA | 58.531 | 36.000 | 17.95 | 7.61 | 0.00 | 2.01 |
3268 | 4559 | 8.284945 | TGATCATTGGAGTAAAATTCTCAAGG | 57.715 | 34.615 | 0.00 | 0.00 | 34.04 | 3.61 |
3340 | 6626 | 8.846943 | TTTGAAGCTTAGTTATGATGAGTTGA | 57.153 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
3365 | 6651 | 7.708998 | ACATACCGTTTACAACAATGTTTCTT | 58.291 | 30.769 | 0.00 | 0.00 | 41.05 | 2.52 |
3366 | 6652 | 7.646130 | ACATACCGTTTACAACAATGTTTCTTG | 59.354 | 33.333 | 0.00 | 0.00 | 41.05 | 3.02 |
3574 | 6899 | 4.865365 | AGGAAAAAGAATTCTCTCTACGCG | 59.135 | 41.667 | 8.78 | 3.53 | 0.00 | 6.01 |
3630 | 6967 | 2.161410 | TGATTTTGCGAGGATGGTTTCG | 59.839 | 45.455 | 0.00 | 0.00 | 39.69 | 3.46 |
3631 | 6968 | 0.878416 | TTTTGCGAGGATGGTTTCGG | 59.122 | 50.000 | 0.00 | 0.00 | 37.30 | 4.30 |
3632 | 6969 | 0.250553 | TTTGCGAGGATGGTTTCGGT | 60.251 | 50.000 | 0.00 | 0.00 | 37.30 | 4.69 |
3641 | 6978 | 3.517901 | AGGATGGTTTCGGTGACTGAATA | 59.482 | 43.478 | 7.79 | 0.00 | 0.00 | 1.75 |
3648 | 6985 | 1.067060 | TCGGTGACTGAATATGCGAGG | 59.933 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
3669 | 7006 | 4.343526 | AGGATAGATGGTCTGCAGTGTAAG | 59.656 | 45.833 | 14.67 | 0.00 | 0.00 | 2.34 |
3675 | 7012 | 5.645497 | AGATGGTCTGCAGTGTAAGAAAATC | 59.355 | 40.000 | 14.67 | 5.65 | 0.00 | 2.17 |
3725 | 7062 | 4.997395 | AGTAACTGGTTCTGCATACAACAG | 59.003 | 41.667 | 3.94 | 3.94 | 36.44 | 3.16 |
3907 | 7244 | 0.031857 | CCTGCTGCGAGTATCTCCAG | 59.968 | 60.000 | 0.00 | 9.31 | 34.37 | 3.86 |
3908 | 7245 | 1.028130 | CTGCTGCGAGTATCTCCAGA | 58.972 | 55.000 | 14.56 | 0.00 | 33.66 | 3.86 |
4008 | 7345 | 8.492673 | TGCATCTTCGTTATCTAAAACTTGAT | 57.507 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
4033 | 7379 | 0.240945 | CGGGATTGTGCCACAAGTTC | 59.759 | 55.000 | 16.35 | 9.32 | 41.94 | 3.01 |
4041 | 7387 | 2.434336 | TGTGCCACAAGTTCTCAGTACT | 59.566 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
4045 | 7391 | 4.574828 | TGCCACAAGTTCTCAGTACTTTTC | 59.425 | 41.667 | 0.00 | 0.00 | 33.73 | 2.29 |
4049 | 7395 | 6.763610 | CCACAAGTTCTCAGTACTTTTCTTCT | 59.236 | 38.462 | 0.00 | 0.00 | 33.73 | 2.85 |
4079 | 7425 | 6.992063 | AGTATTAGATGTTGGCTCAAACAG | 57.008 | 37.500 | 6.38 | 0.00 | 42.99 | 3.16 |
4099 | 7445 | 6.039415 | ACAGGGATACTTCTCTACCCAATA | 57.961 | 41.667 | 0.00 | 0.00 | 42.62 | 1.90 |
4258 | 7613 | 6.951062 | TTACACAACTCAAATCCATGAACA | 57.049 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
4364 | 7719 | 5.053145 | ACACTTAGAAGAGCTTCACTTGTG | 58.947 | 41.667 | 12.32 | 14.79 | 41.84 | 3.33 |
4365 | 7720 | 5.053145 | CACTTAGAAGAGCTTCACTTGTGT | 58.947 | 41.667 | 12.32 | 0.84 | 41.84 | 3.72 |
4389 | 7762 | 3.118884 | GGAAGCATGCATTTTCAGTGGAT | 60.119 | 43.478 | 21.98 | 0.00 | 0.00 | 3.41 |
4391 | 7794 | 5.394443 | GGAAGCATGCATTTTCAGTGGATAA | 60.394 | 40.000 | 21.98 | 0.00 | 0.00 | 1.75 |
4434 | 7837 | 1.674962 | GAATCTTCTGCAGACATGGCC | 59.325 | 52.381 | 18.03 | 0.00 | 32.83 | 5.36 |
4515 | 7918 | 4.374399 | GGTATAATGGTACCACTTCACCG | 58.626 | 47.826 | 19.09 | 0.00 | 42.98 | 4.94 |
4549 | 7952 | 7.217200 | TGCCAATAATATCTCAGTTACCTCAC | 58.783 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
4704 | 8107 | 5.450550 | GGAGCTAATTTTACTCAACATGCCC | 60.451 | 44.000 | 0.00 | 0.00 | 31.88 | 5.36 |
4748 | 8151 | 0.768221 | TCTGTGGGGGCTCTGAACTT | 60.768 | 55.000 | 0.00 | 0.00 | 0.00 | 2.66 |
4752 | 8155 | 1.351350 | GTGGGGGCTCTGAACTTTAGT | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
4797 | 8200 | 4.415881 | TTGTGAAGCACTGAAGGAGTTA | 57.584 | 40.909 | 0.00 | 0.00 | 35.11 | 2.24 |
4905 | 8308 | 4.202141 | CCTCATTTGAAAGTGTTGAAGCCA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 4.75 |
4918 | 8321 | 1.202806 | TGAAGCCACTTCCACCTTCAG | 60.203 | 52.381 | 4.96 | 0.00 | 39.51 | 3.02 |
4964 | 8370 | 4.830826 | AAGTGGTTTCAAGATTTCCGTC | 57.169 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
4980 | 8386 | 5.372547 | TTCCGTCTATGAAGGTATCATCG | 57.627 | 43.478 | 0.00 | 0.00 | 45.91 | 3.84 |
4999 | 8405 | 7.519032 | TCATCGGGTGAAAAGTTAGAAATTT | 57.481 | 32.000 | 0.00 | 0.00 | 32.78 | 1.82 |
5015 | 8423 | 6.391227 | AGAAATTTGGGATGCTAATTACCG | 57.609 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
5045 | 8463 | 4.981054 | CGATCGATCTTGTGATGAGTTGAT | 59.019 | 41.667 | 22.43 | 0.00 | 32.19 | 2.57 |
5046 | 8464 | 5.116831 | CGATCGATCTTGTGATGAGTTGATC | 59.883 | 44.000 | 22.43 | 0.00 | 32.19 | 2.92 |
5133 | 10541 | 5.473504 | TGGTTGCAGAAATCTAAGGTCTTTC | 59.526 | 40.000 | 0.00 | 0.00 | 0.00 | 2.62 |
5186 | 10594 | 8.029642 | TCTTTAACGAGCTTGAAAATAAGAGG | 57.970 | 34.615 | 8.31 | 0.00 | 0.00 | 3.69 |
5209 | 10617 | 5.516696 | GGCTGTGAAAAACTTTTCTCTTCAC | 59.483 | 40.000 | 14.31 | 10.26 | 45.14 | 3.18 |
5224 | 10638 | 0.328926 | TTCACATGAGATGCCAGCCA | 59.671 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
5230 | 10644 | 1.466856 | TGAGATGCCAGCCATTGAAC | 58.533 | 50.000 | 0.00 | 0.00 | 33.29 | 3.18 |
5251 | 10665 | 1.153597 | TGTGACAGCTGTGAACTGCG | 61.154 | 55.000 | 27.27 | 0.00 | 44.18 | 5.18 |
5254 | 10668 | 1.151668 | GACAGCTGTGAACTGCGATT | 58.848 | 50.000 | 27.27 | 0.00 | 44.18 | 3.34 |
5478 | 11100 | 1.464734 | TGACCTGGTTAGCTCGAGAG | 58.535 | 55.000 | 18.75 | 2.77 | 0.00 | 3.20 |
5567 | 11189 | 4.456566 | TCGTCTAAAATTTAACTGGGGCAC | 59.543 | 41.667 | 0.00 | 0.00 | 0.00 | 5.01 |
5588 | 11210 | 3.452627 | ACGGACTGCTTCTCTGGATTTAT | 59.547 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
5815 | 11483 | 9.343539 | GAGATATCACCAGCCTTAAAAAGTTAT | 57.656 | 33.333 | 5.32 | 0.00 | 0.00 | 1.89 |
5823 | 11492 | 8.683615 | ACCAGCCTTAAAAAGTTATATGTAAGC | 58.316 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
5888 | 11557 | 3.555586 | GCACTGGAAGAATTGGCAATTGT | 60.556 | 43.478 | 28.78 | 22.39 | 37.43 | 2.71 |
5927 | 11641 | 4.002316 | ACCGTCACTGTACTAGAAGACTC | 58.998 | 47.826 | 0.00 | 0.00 | 34.85 | 3.36 |
5939 | 11653 | 0.612744 | GAAGACTCTCCTGGCTTGCT | 59.387 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
5940 | 11654 | 0.324285 | AAGACTCTCCTGGCTTGCTG | 59.676 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
5965 | 11733 | 2.433604 | TGTTTGGAAAGGCTTTGCATCA | 59.566 | 40.909 | 30.50 | 26.77 | 40.72 | 3.07 |
6103 | 11875 | 3.683802 | CTGCTCAAATCCCTGAAAGAGT | 58.316 | 45.455 | 0.00 | 0.00 | 34.07 | 3.24 |
6335 | 12107 | 6.078456 | AGTCAAAATTGGTGGGAGATATGA | 57.922 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
6390 | 12163 | 1.713597 | TCTGCATGCACAACTCGTAG | 58.286 | 50.000 | 18.46 | 3.63 | 0.00 | 3.51 |
6401 | 12174 | 0.249741 | AACTCGTAGCGCTTGGTTGT | 60.250 | 50.000 | 18.68 | 6.06 | 0.00 | 3.32 |
6426 | 12200 | 9.599322 | GTTCTTGAGTTAAAGTTGTGTCATATG | 57.401 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
6427 | 12201 | 7.806690 | TCTTGAGTTAAAGTTGTGTCATATGC | 58.193 | 34.615 | 0.00 | 0.00 | 0.00 | 3.14 |
6428 | 12202 | 7.661437 | TCTTGAGTTAAAGTTGTGTCATATGCT | 59.339 | 33.333 | 0.00 | 0.00 | 0.00 | 3.79 |
6429 | 12203 | 7.364522 | TGAGTTAAAGTTGTGTCATATGCTC | 57.635 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
6430 | 12204 | 6.934083 | TGAGTTAAAGTTGTGTCATATGCTCA | 59.066 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
6431 | 12205 | 7.607607 | TGAGTTAAAGTTGTGTCATATGCTCAT | 59.392 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
6432 | 12206 | 9.098355 | GAGTTAAAGTTGTGTCATATGCTCATA | 57.902 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
6519 | 12498 | 3.733337 | GTCTGGGTAGGCATTCATGTAG | 58.267 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6553 | 12532 | 7.122948 | ACTGGTATGTTTTGTTGTTTGGTCTTA | 59.877 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
6554 | 12533 | 8.012957 | TGGTATGTTTTGTTGTTTGGTCTTAT | 57.987 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
6555 | 12534 | 8.138712 | TGGTATGTTTTGTTGTTTGGTCTTATC | 58.861 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
6556 | 12535 | 8.138712 | GGTATGTTTTGTTGTTTGGTCTTATCA | 58.861 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
6557 | 12536 | 9.522804 | GTATGTTTTGTTGTTTGGTCTTATCAA | 57.477 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
6559 | 12538 | 7.607250 | TGTTTTGTTGTTTGGTCTTATCAACT | 58.393 | 30.769 | 0.00 | 0.00 | 39.03 | 3.16 |
6560 | 12539 | 7.543868 | TGTTTTGTTGTTTGGTCTTATCAACTG | 59.456 | 33.333 | 0.00 | 0.00 | 39.03 | 3.16 |
6575 | 12567 | 8.906867 | TCTTATCAACTGAATGATGAATTTCCC | 58.093 | 33.333 | 9.76 | 0.00 | 40.21 | 3.97 |
6663 | 12838 | 6.611613 | TCCGAAGATGCATCCTATTATTCT | 57.388 | 37.500 | 23.06 | 0.00 | 0.00 | 2.40 |
6697 | 12879 | 5.226396 | TGGTTTATCCAAAATTCGTTGCTG | 58.774 | 37.500 | 0.00 | 0.00 | 44.12 | 4.41 |
6699 | 12881 | 4.782019 | TTATCCAAAATTCGTTGCTGCT | 57.218 | 36.364 | 0.00 | 0.00 | 0.00 | 4.24 |
6702 | 12884 | 0.704551 | CAAAATTCGTTGCTGCTCGC | 59.295 | 50.000 | 0.00 | 0.00 | 39.77 | 5.03 |
6745 | 12927 | 2.799126 | TGTGCCCTTTATCGGAACAT | 57.201 | 45.000 | 0.00 | 0.00 | 0.00 | 2.71 |
6781 | 13020 | 1.696336 | AGTGTGGTGAACAGAGCAGAT | 59.304 | 47.619 | 0.00 | 0.00 | 40.26 | 2.90 |
6795 | 16329 | 4.934001 | CAGAGCAGATAAACATGTCACAGT | 59.066 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
6901 | 16440 | 3.629398 | GCTGATTACCAGTTCCATTCCTG | 59.371 | 47.826 | 0.00 | 0.00 | 44.71 | 3.86 |
6902 | 16441 | 3.620488 | TGATTACCAGTTCCATTCCTGC | 58.380 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
6908 | 16449 | 2.158900 | CCAGTTCCATTCCTGCGATACT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
6925 | 16466 | 6.263392 | TGCGATACTAATGAAGCTACTTCTCT | 59.737 | 38.462 | 8.66 | 0.00 | 40.73 | 3.10 |
6934 | 16475 | 5.773575 | TGAAGCTACTTCTCTTGTGTGTAG | 58.226 | 41.667 | 8.66 | 0.00 | 40.73 | 2.74 |
6945 | 16486 | 7.211966 | TCTCTTGTGTGTAGTTTAGTACTCC | 57.788 | 40.000 | 0.00 | 0.00 | 38.33 | 3.85 |
6946 | 16487 | 6.208204 | TCTCTTGTGTGTAGTTTAGTACTCCC | 59.792 | 42.308 | 0.00 | 0.00 | 38.33 | 4.30 |
6947 | 16488 | 6.073314 | TCTTGTGTGTAGTTTAGTACTCCCT | 58.927 | 40.000 | 0.00 | 0.00 | 38.33 | 4.20 |
6949 | 16490 | 4.768968 | TGTGTGTAGTTTAGTACTCCCTCC | 59.231 | 45.833 | 0.00 | 0.00 | 38.33 | 4.30 |
6954 | 16495 | 4.348020 | AGTTTAGTACTCCCTCCATCCA | 57.652 | 45.455 | 0.00 | 0.00 | 28.23 | 3.41 |
6956 | 16497 | 5.098663 | AGTTTAGTACTCCCTCCATCCAAA | 58.901 | 41.667 | 0.00 | 0.00 | 28.23 | 3.28 |
6957 | 16498 | 5.731678 | AGTTTAGTACTCCCTCCATCCAAAT | 59.268 | 40.000 | 0.00 | 0.00 | 28.23 | 2.32 |
6958 | 16499 | 6.906901 | AGTTTAGTACTCCCTCCATCCAAATA | 59.093 | 38.462 | 0.00 | 0.00 | 28.23 | 1.40 |
6959 | 16500 | 6.996180 | TTAGTACTCCCTCCATCCAAATAG | 57.004 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
6960 | 16501 | 4.897051 | AGTACTCCCTCCATCCAAATAGT | 58.103 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
6961 | 16502 | 4.656112 | AGTACTCCCTCCATCCAAATAGTG | 59.344 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
6962 | 16503 | 3.464828 | ACTCCCTCCATCCAAATAGTGT | 58.535 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
6963 | 16504 | 3.456277 | ACTCCCTCCATCCAAATAGTGTC | 59.544 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
6964 | 16505 | 3.713764 | CTCCCTCCATCCAAATAGTGTCT | 59.286 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
6965 | 16506 | 3.711704 | TCCCTCCATCCAAATAGTGTCTC | 59.288 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
6966 | 16507 | 3.455910 | CCCTCCATCCAAATAGTGTCTCA | 59.544 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
6967 | 16508 | 4.080356 | CCCTCCATCCAAATAGTGTCTCAA | 60.080 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
6968 | 16509 | 4.878397 | CCTCCATCCAAATAGTGTCTCAAC | 59.122 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
6969 | 16510 | 5.338708 | CCTCCATCCAAATAGTGTCTCAACT | 60.339 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
6970 | 16511 | 6.126863 | TCCATCCAAATAGTGTCTCAACTT | 57.873 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
6971 | 16512 | 6.542821 | TCCATCCAAATAGTGTCTCAACTTT | 58.457 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
6972 | 16513 | 7.685481 | TCCATCCAAATAGTGTCTCAACTTTA | 58.315 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
6973 | 16514 | 7.824289 | TCCATCCAAATAGTGTCTCAACTTTAG | 59.176 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
6974 | 16515 | 7.607991 | CCATCCAAATAGTGTCTCAACTTTAGT | 59.392 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
6975 | 16516 | 9.653287 | CATCCAAATAGTGTCTCAACTTTAGTA | 57.347 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
6976 | 16517 | 9.654663 | ATCCAAATAGTGTCTCAACTTTAGTAC | 57.345 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
6977 | 16518 | 8.644216 | TCCAAATAGTGTCTCAACTTTAGTACA | 58.356 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
6978 | 16519 | 9.268268 | CCAAATAGTGTCTCAACTTTAGTACAA | 57.732 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
7028 | 16569 | 9.853177 | ATTAAGATACTTATTTTGGGACAGAGG | 57.147 | 33.333 | 0.00 | 0.00 | 42.39 | 3.69 |
7029 | 16570 | 6.253946 | AGATACTTATTTTGGGACAGAGGG | 57.746 | 41.667 | 0.00 | 0.00 | 42.39 | 4.30 |
7030 | 16571 | 5.970640 | AGATACTTATTTTGGGACAGAGGGA | 59.029 | 40.000 | 0.00 | 0.00 | 42.39 | 4.20 |
7031 | 16572 | 4.576330 | ACTTATTTTGGGACAGAGGGAG | 57.424 | 45.455 | 0.00 | 0.00 | 42.39 | 4.30 |
7032 | 16573 | 3.916989 | ACTTATTTTGGGACAGAGGGAGT | 59.083 | 43.478 | 0.00 | 0.00 | 42.39 | 3.85 |
7033 | 16574 | 5.098663 | ACTTATTTTGGGACAGAGGGAGTA | 58.901 | 41.667 | 0.00 | 0.00 | 42.39 | 2.59 |
7034 | 16575 | 5.045797 | ACTTATTTTGGGACAGAGGGAGTAC | 60.046 | 44.000 | 0.00 | 0.00 | 42.39 | 2.73 |
7035 | 16576 | 2.715763 | TTTGGGACAGAGGGAGTACT | 57.284 | 50.000 | 0.00 | 0.00 | 42.39 | 2.73 |
7036 | 16577 | 3.839323 | TTTGGGACAGAGGGAGTACTA | 57.161 | 47.619 | 0.00 | 0.00 | 42.39 | 1.82 |
7037 | 16578 | 4.348020 | TTTGGGACAGAGGGAGTACTAT | 57.652 | 45.455 | 0.00 | 0.00 | 42.39 | 2.12 |
7038 | 16579 | 3.596940 | TGGGACAGAGGGAGTACTATC | 57.403 | 52.381 | 0.00 | 0.00 | 0.00 | 2.08 |
7039 | 16580 | 2.158652 | TGGGACAGAGGGAGTACTATCG | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 2.92 |
7040 | 16581 | 2.158638 | GGGACAGAGGGAGTACTATCGT | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 3.73 |
7041 | 16582 | 3.072184 | GGGACAGAGGGAGTACTATCGTA | 59.928 | 52.174 | 0.00 | 0.00 | 0.00 | 3.43 |
7042 | 16583 | 4.263418 | GGGACAGAGGGAGTACTATCGTAT | 60.263 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
7043 | 16584 | 4.937015 | GGACAGAGGGAGTACTATCGTATC | 59.063 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
7044 | 16585 | 4.567971 | ACAGAGGGAGTACTATCGTATCG | 58.432 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
7165 | 16837 | 2.015736 | AACTGATCACCGCATCTCAC | 57.984 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
7179 | 16851 | 0.033920 | TCTCACACGAGCATTGCAGT | 59.966 | 50.000 | 11.91 | 7.66 | 39.30 | 4.40 |
7181 | 16853 | 2.068519 | CTCACACGAGCATTGCAGTTA | 58.931 | 47.619 | 11.91 | 0.00 | 31.00 | 2.24 |
7195 | 16867 | 5.484173 | TTGCAGTTACATCGATCATTTCC | 57.516 | 39.130 | 0.00 | 0.00 | 0.00 | 3.13 |
7206 | 16878 | 4.450976 | TCGATCATTTCCACCATGTAAGG | 58.549 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
7239 | 16911 | 7.678837 | TGAACATTAGCAATCCCTGAAAATTT | 58.321 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
7270 | 16942 | 4.399618 | TGGCAAACACAAGCAAAGTAACTA | 59.600 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
7272 | 16944 | 5.808030 | GGCAAACACAAGCAAAGTAACTAAA | 59.192 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
7325 | 16999 | 1.360192 | GCACCAGCACACCAAAGAC | 59.640 | 57.895 | 0.00 | 0.00 | 41.58 | 3.01 |
7326 | 17000 | 2.032981 | CACCAGCACACCAAAGACC | 58.967 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
7327 | 17001 | 0.751277 | CACCAGCACACCAAAGACCA | 60.751 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
7328 | 17002 | 0.033601 | ACCAGCACACCAAAGACCAA | 60.034 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
7330 | 17004 | 1.202405 | CCAGCACACCAAAGACCAAAC | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 2.93 |
7332 | 17006 | 1.476488 | AGCACACCAAAGACCAAACAC | 59.524 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
7333 | 17007 | 1.797348 | GCACACCAAAGACCAAACACG | 60.797 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
7334 | 17008 | 1.470890 | CACACCAAAGACCAAACACGT | 59.529 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
7337 | 17011 | 3.006003 | ACACCAAAGACCAAACACGTTTT | 59.994 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
7338 | 17012 | 4.217983 | ACACCAAAGACCAAACACGTTTTA | 59.782 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
7339 | 17013 | 4.559643 | CACCAAAGACCAAACACGTTTTAC | 59.440 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
7341 | 17015 | 5.647225 | ACCAAAGACCAAACACGTTTTACTA | 59.353 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
7342 | 17016 | 6.183360 | ACCAAAGACCAAACACGTTTTACTAG | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 7.487829 | GGCATCGTAAATCATGTGTTGTAATTT | 59.512 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
94 | 115 | 9.976511 | CATGCATGGATTTAGTTCTCATTTATT | 57.023 | 29.630 | 19.40 | 0.00 | 0.00 | 1.40 |
178 | 199 | 5.191722 | TCAGTTGGGTAAGATAAGCATTCCT | 59.808 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
193 | 214 | 1.481056 | CCTCGGTTCCTCAGTTGGGT | 61.481 | 60.000 | 0.00 | 0.00 | 0.00 | 4.51 |
288 | 311 | 1.145738 | AGCCCAGTCCATGAACAAAGT | 59.854 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
389 | 416 | 2.356695 | AGCGGTGTTTGTACCAAACTTC | 59.643 | 45.455 | 17.72 | 11.80 | 40.89 | 3.01 |
624 | 673 | 7.275888 | TGCAAGAACTTCAACTAAATCATGT | 57.724 | 32.000 | 0.00 | 0.00 | 0.00 | 3.21 |
668 | 718 | 4.338879 | AGACCTGCTCAAAACATGCTATT | 58.661 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
700 | 750 | 2.705826 | GTGTGCATAGCAGCGCTC | 59.294 | 61.111 | 7.13 | 2.24 | 44.96 | 5.03 |
701 | 751 | 3.190849 | CGTGTGCATAGCAGCGCT | 61.191 | 61.111 | 2.64 | 2.64 | 44.96 | 5.92 |
702 | 752 | 3.188100 | TCGTGTGCATAGCAGCGC | 61.188 | 61.111 | 0.00 | 0.00 | 40.08 | 5.92 |
703 | 753 | 2.697425 | GTCGTGTGCATAGCAGCG | 59.303 | 61.111 | 8.83 | 8.83 | 40.08 | 5.18 |
704 | 754 | 2.697425 | CGTCGTGTGCATAGCAGC | 59.303 | 61.111 | 0.00 | 0.00 | 40.08 | 5.25 |
705 | 755 | 2.094066 | TGCGTCGTGTGCATAGCAG | 61.094 | 57.895 | 0.00 | 0.00 | 40.08 | 4.24 |
706 | 756 | 2.048690 | TGCGTCGTGTGCATAGCA | 60.049 | 55.556 | 0.00 | 0.00 | 37.44 | 3.49 |
712 | 762 | 1.805539 | TCTGCTATGCGTCGTGTGC | 60.806 | 57.895 | 0.00 | 0.00 | 0.00 | 4.57 |
713 | 763 | 1.733416 | CGTCTGCTATGCGTCGTGTG | 61.733 | 60.000 | 0.00 | 0.00 | 0.00 | 3.82 |
714 | 764 | 1.514228 | CGTCTGCTATGCGTCGTGT | 60.514 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
715 | 765 | 0.592500 | ATCGTCTGCTATGCGTCGTG | 60.593 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
716 | 766 | 0.100682 | AATCGTCTGCTATGCGTCGT | 59.899 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
717 | 767 | 1.071894 | CAAATCGTCTGCTATGCGTCG | 60.072 | 52.381 | 0.00 | 0.00 | 0.00 | 5.12 |
718 | 768 | 1.927174 | ACAAATCGTCTGCTATGCGTC | 59.073 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
719 | 769 | 1.660607 | CACAAATCGTCTGCTATGCGT | 59.339 | 47.619 | 0.00 | 0.00 | 0.00 | 5.24 |
720 | 770 | 1.593070 | GCACAAATCGTCTGCTATGCG | 60.593 | 52.381 | 0.00 | 0.00 | 0.00 | 4.73 |
721 | 771 | 1.398041 | TGCACAAATCGTCTGCTATGC | 59.602 | 47.619 | 0.00 | 0.00 | 0.00 | 3.14 |
722 | 772 | 2.535534 | CGTGCACAAATCGTCTGCTATG | 60.536 | 50.000 | 18.64 | 0.00 | 0.00 | 2.23 |
723 | 773 | 1.660607 | CGTGCACAAATCGTCTGCTAT | 59.339 | 47.619 | 18.64 | 0.00 | 0.00 | 2.97 |
724 | 774 | 1.067693 | CGTGCACAAATCGTCTGCTA | 58.932 | 50.000 | 18.64 | 0.00 | 0.00 | 3.49 |
725 | 775 | 0.599991 | TCGTGCACAAATCGTCTGCT | 60.600 | 50.000 | 18.64 | 0.00 | 0.00 | 4.24 |
726 | 776 | 0.443869 | ATCGTGCACAAATCGTCTGC | 59.556 | 50.000 | 18.64 | 0.00 | 0.00 | 4.26 |
727 | 777 | 2.282555 | CCTATCGTGCACAAATCGTCTG | 59.717 | 50.000 | 18.64 | 0.00 | 0.00 | 3.51 |
728 | 778 | 2.540515 | CCTATCGTGCACAAATCGTCT | 58.459 | 47.619 | 18.64 | 0.00 | 0.00 | 4.18 |
729 | 779 | 1.593006 | CCCTATCGTGCACAAATCGTC | 59.407 | 52.381 | 18.64 | 0.00 | 0.00 | 4.20 |
730 | 780 | 1.651987 | CCCTATCGTGCACAAATCGT | 58.348 | 50.000 | 18.64 | 0.00 | 0.00 | 3.73 |
731 | 781 | 0.304705 | GCCCTATCGTGCACAAATCG | 59.695 | 55.000 | 18.64 | 1.94 | 0.00 | 3.34 |
732 | 782 | 1.378531 | TGCCCTATCGTGCACAAATC | 58.621 | 50.000 | 18.64 | 0.00 | 31.31 | 2.17 |
733 | 783 | 2.057137 | ATGCCCTATCGTGCACAAAT | 57.943 | 45.000 | 18.64 | 12.05 | 40.88 | 2.32 |
734 | 784 | 2.700722 | TATGCCCTATCGTGCACAAA | 57.299 | 45.000 | 18.64 | 4.30 | 40.88 | 2.83 |
735 | 785 | 2.549992 | GGATATGCCCTATCGTGCACAA | 60.550 | 50.000 | 18.64 | 0.00 | 40.88 | 3.33 |
736 | 786 | 1.001974 | GGATATGCCCTATCGTGCACA | 59.998 | 52.381 | 18.64 | 4.45 | 40.88 | 4.57 |
737 | 787 | 1.726853 | GGATATGCCCTATCGTGCAC | 58.273 | 55.000 | 6.82 | 6.82 | 40.88 | 4.57 |
738 | 788 | 0.246360 | CGGATATGCCCTATCGTGCA | 59.754 | 55.000 | 0.00 | 0.00 | 42.52 | 4.57 |
739 | 789 | 0.246635 | ACGGATATGCCCTATCGTGC | 59.753 | 55.000 | 0.00 | 0.00 | 37.67 | 5.34 |
740 | 790 | 1.996292 | CACGGATATGCCCTATCGTG | 58.004 | 55.000 | 0.00 | 0.00 | 37.67 | 4.35 |
741 | 791 | 0.246635 | GCACGGATATGCCCTATCGT | 59.753 | 55.000 | 0.00 | 0.00 | 39.86 | 3.73 |
742 | 792 | 0.802222 | CGCACGGATATGCCCTATCG | 60.802 | 60.000 | 0.00 | 0.00 | 42.99 | 2.92 |
743 | 793 | 0.246635 | ACGCACGGATATGCCCTATC | 59.753 | 55.000 | 0.00 | 0.00 | 42.99 | 2.08 |
744 | 794 | 0.246635 | GACGCACGGATATGCCCTAT | 59.753 | 55.000 | 0.00 | 0.00 | 42.99 | 2.57 |
745 | 795 | 1.663739 | GACGCACGGATATGCCCTA | 59.336 | 57.895 | 0.00 | 0.00 | 42.99 | 3.53 |
746 | 796 | 2.421739 | GACGCACGGATATGCCCT | 59.578 | 61.111 | 0.00 | 0.00 | 42.99 | 5.19 |
747 | 797 | 2.665185 | GGACGCACGGATATGCCC | 60.665 | 66.667 | 0.00 | 0.00 | 42.99 | 5.36 |
748 | 798 | 3.036084 | CGGACGCACGGATATGCC | 61.036 | 66.667 | 0.00 | 0.00 | 42.99 | 4.40 |
749 | 799 | 2.279252 | ACGGACGCACGGATATGC | 60.279 | 61.111 | 4.37 | 0.00 | 42.48 | 3.14 |
750 | 800 | 2.585869 | GCACGGACGCACGGATATG | 61.586 | 63.158 | 4.37 | 0.00 | 38.39 | 1.78 |
751 | 801 | 2.279252 | GCACGGACGCACGGATAT | 60.279 | 61.111 | 4.37 | 0.00 | 38.39 | 1.63 |
752 | 802 | 1.726533 | TATGCACGGACGCACGGATA | 61.727 | 55.000 | 0.00 | 0.00 | 46.56 | 2.59 |
753 | 803 | 2.363711 | ATATGCACGGACGCACGGAT | 62.364 | 55.000 | 0.00 | 0.00 | 46.56 | 4.18 |
754 | 804 | 2.566057 | AATATGCACGGACGCACGGA | 62.566 | 55.000 | 0.00 | 0.00 | 46.56 | 4.69 |
755 | 805 | 0.872451 | TAATATGCACGGACGCACGG | 60.872 | 55.000 | 0.00 | 0.00 | 46.56 | 4.94 |
756 | 806 | 1.124297 | GATAATATGCACGGACGCACG | 59.876 | 52.381 | 0.00 | 0.00 | 46.56 | 5.34 |
757 | 807 | 2.131972 | TGATAATATGCACGGACGCAC | 58.868 | 47.619 | 0.00 | 0.00 | 46.56 | 5.34 |
759 | 809 | 3.247648 | ACTTTGATAATATGCACGGACGC | 59.752 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
760 | 810 | 4.761745 | CACTTTGATAATATGCACGGACG | 58.238 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
761 | 811 | 4.035091 | TGCACTTTGATAATATGCACGGAC | 59.965 | 41.667 | 0.00 | 0.00 | 41.18 | 4.79 |
762 | 812 | 4.195416 | TGCACTTTGATAATATGCACGGA | 58.805 | 39.130 | 0.00 | 0.00 | 41.18 | 4.69 |
763 | 813 | 4.530388 | CTGCACTTTGATAATATGCACGG | 58.470 | 43.478 | 0.00 | 0.00 | 41.18 | 4.94 |
764 | 814 | 3.970610 | GCTGCACTTTGATAATATGCACG | 59.029 | 43.478 | 0.00 | 0.00 | 41.18 | 5.34 |
765 | 815 | 4.923893 | TGCTGCACTTTGATAATATGCAC | 58.076 | 39.130 | 0.00 | 0.00 | 41.18 | 4.57 |
766 | 816 | 4.883006 | TCTGCTGCACTTTGATAATATGCA | 59.117 | 37.500 | 0.00 | 0.00 | 43.70 | 3.96 |
767 | 817 | 5.210715 | GTCTGCTGCACTTTGATAATATGC | 58.789 | 41.667 | 0.00 | 0.00 | 36.81 | 3.14 |
768 | 818 | 5.438117 | CGTCTGCTGCACTTTGATAATATG | 58.562 | 41.667 | 0.00 | 0.00 | 0.00 | 1.78 |
769 | 819 | 4.512944 | CCGTCTGCTGCACTTTGATAATAT | 59.487 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
770 | 820 | 3.871006 | CCGTCTGCTGCACTTTGATAATA | 59.129 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
771 | 821 | 2.679837 | CCGTCTGCTGCACTTTGATAAT | 59.320 | 45.455 | 0.00 | 0.00 | 0.00 | 1.28 |
772 | 822 | 2.076100 | CCGTCTGCTGCACTTTGATAA | 58.924 | 47.619 | 0.00 | 0.00 | 0.00 | 1.75 |
773 | 823 | 1.725641 | CCGTCTGCTGCACTTTGATA | 58.274 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
774 | 824 | 1.580845 | GCCGTCTGCTGCACTTTGAT | 61.581 | 55.000 | 0.00 | 0.00 | 36.87 | 2.57 |
775 | 825 | 2.253758 | GCCGTCTGCTGCACTTTGA | 61.254 | 57.895 | 0.00 | 0.00 | 36.87 | 2.69 |
776 | 826 | 2.253452 | GCCGTCTGCTGCACTTTG | 59.747 | 61.111 | 0.00 | 0.00 | 36.87 | 2.77 |
785 | 835 | 2.219674 | CGATTTTCATCTAGCCGTCTGC | 59.780 | 50.000 | 0.00 | 0.00 | 41.71 | 4.26 |
786 | 836 | 3.243877 | CACGATTTTCATCTAGCCGTCTG | 59.756 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
787 | 837 | 3.448686 | CACGATTTTCATCTAGCCGTCT | 58.551 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
788 | 838 | 2.033662 | GCACGATTTTCATCTAGCCGTC | 60.034 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
789 | 839 | 1.933853 | GCACGATTTTCATCTAGCCGT | 59.066 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
790 | 840 | 1.933181 | TGCACGATTTTCATCTAGCCG | 59.067 | 47.619 | 0.00 | 0.00 | 0.00 | 5.52 |
791 | 841 | 2.032178 | GGTGCACGATTTTCATCTAGCC | 59.968 | 50.000 | 11.45 | 0.00 | 0.00 | 3.93 |
792 | 842 | 2.939103 | AGGTGCACGATTTTCATCTAGC | 59.061 | 45.455 | 11.45 | 0.00 | 0.00 | 3.42 |
793 | 843 | 3.935203 | ACAGGTGCACGATTTTCATCTAG | 59.065 | 43.478 | 11.45 | 0.00 | 0.00 | 2.43 |
794 | 844 | 3.932710 | GACAGGTGCACGATTTTCATCTA | 59.067 | 43.478 | 11.45 | 0.00 | 0.00 | 1.98 |
795 | 845 | 2.744202 | GACAGGTGCACGATTTTCATCT | 59.256 | 45.455 | 11.45 | 0.00 | 0.00 | 2.90 |
796 | 846 | 2.474526 | CGACAGGTGCACGATTTTCATC | 60.475 | 50.000 | 11.45 | 0.00 | 0.00 | 2.92 |
797 | 847 | 1.464608 | CGACAGGTGCACGATTTTCAT | 59.535 | 47.619 | 11.45 | 0.00 | 0.00 | 2.57 |
798 | 848 | 0.865111 | CGACAGGTGCACGATTTTCA | 59.135 | 50.000 | 11.45 | 0.00 | 0.00 | 2.69 |
799 | 849 | 0.865769 | ACGACAGGTGCACGATTTTC | 59.134 | 50.000 | 11.45 | 1.81 | 0.00 | 2.29 |
800 | 850 | 0.865769 | GACGACAGGTGCACGATTTT | 59.134 | 50.000 | 11.45 | 0.00 | 0.00 | 1.82 |
801 | 851 | 0.949105 | GGACGACAGGTGCACGATTT | 60.949 | 55.000 | 11.45 | 0.00 | 36.89 | 2.17 |
802 | 852 | 1.374252 | GGACGACAGGTGCACGATT | 60.374 | 57.895 | 11.45 | 0.00 | 36.89 | 3.34 |
803 | 853 | 2.261671 | GGACGACAGGTGCACGAT | 59.738 | 61.111 | 11.45 | 0.00 | 36.89 | 3.73 |
804 | 854 | 3.220658 | TGGACGACAGGTGCACGA | 61.221 | 61.111 | 11.45 | 0.00 | 42.55 | 4.35 |
808 | 858 | 1.448540 | CTCCATGGACGACAGGTGC | 60.449 | 63.158 | 11.44 | 0.00 | 37.52 | 5.01 |
809 | 859 | 0.390340 | CACTCCATGGACGACAGGTG | 60.390 | 60.000 | 11.44 | 12.63 | 0.00 | 4.00 |
810 | 860 | 1.975327 | CACTCCATGGACGACAGGT | 59.025 | 57.895 | 11.44 | 2.90 | 0.00 | 4.00 |
811 | 861 | 1.448540 | GCACTCCATGGACGACAGG | 60.449 | 63.158 | 11.44 | 2.15 | 0.00 | 4.00 |
812 | 862 | 0.107993 | ATGCACTCCATGGACGACAG | 60.108 | 55.000 | 11.44 | 2.99 | 31.48 | 3.51 |
813 | 863 | 0.108186 | GATGCACTCCATGGACGACA | 60.108 | 55.000 | 11.44 | 9.32 | 33.29 | 4.35 |
814 | 864 | 1.148157 | CGATGCACTCCATGGACGAC | 61.148 | 60.000 | 11.44 | 3.12 | 33.29 | 4.34 |
815 | 865 | 1.141665 | CGATGCACTCCATGGACGA | 59.858 | 57.895 | 11.44 | 0.00 | 33.29 | 4.20 |
816 | 866 | 1.148157 | GACGATGCACTCCATGGACG | 61.148 | 60.000 | 11.44 | 14.37 | 34.20 | 4.79 |
817 | 867 | 0.176680 | AGACGATGCACTCCATGGAC | 59.823 | 55.000 | 11.44 | 1.49 | 34.20 | 4.02 |
818 | 868 | 0.176449 | CAGACGATGCACTCCATGGA | 59.824 | 55.000 | 15.27 | 15.27 | 34.20 | 3.41 |
819 | 869 | 2.686602 | CAGACGATGCACTCCATGG | 58.313 | 57.895 | 4.97 | 4.97 | 35.94 | 3.66 |
829 | 879 | 2.034254 | CGAAACAGCTATGCAGACGATG | 60.034 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
830 | 880 | 2.196749 | CGAAACAGCTATGCAGACGAT | 58.803 | 47.619 | 0.00 | 0.00 | 0.00 | 3.73 |
831 | 881 | 1.629013 | CGAAACAGCTATGCAGACGA | 58.371 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
832 | 882 | 0.025513 | GCGAAACAGCTATGCAGACG | 59.974 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
833 | 883 | 3.885777 | GCGAAACAGCTATGCAGAC | 57.114 | 52.632 | 0.00 | 0.00 | 0.00 | 3.51 |
851 | 901 | 1.080569 | GTTGGGTCAAATGGCGCAG | 60.081 | 57.895 | 10.83 | 0.00 | 43.39 | 5.18 |
852 | 902 | 2.913765 | CGTTGGGTCAAATGGCGCA | 61.914 | 57.895 | 10.83 | 0.18 | 40.91 | 6.09 |
853 | 903 | 2.126502 | CGTTGGGTCAAATGGCGC | 60.127 | 61.111 | 0.00 | 0.00 | 0.00 | 6.53 |
854 | 904 | 1.312371 | ATCCGTTGGGTCAAATGGCG | 61.312 | 55.000 | 0.00 | 0.00 | 36.34 | 5.69 |
855 | 905 | 0.455815 | GATCCGTTGGGTCAAATGGC | 59.544 | 55.000 | 0.00 | 0.00 | 36.34 | 4.40 |
856 | 906 | 1.832883 | TGATCCGTTGGGTCAAATGG | 58.167 | 50.000 | 0.00 | 0.00 | 37.53 | 3.16 |
857 | 907 | 2.819608 | AGTTGATCCGTTGGGTCAAATG | 59.180 | 45.455 | 12.84 | 0.00 | 36.10 | 2.32 |
858 | 908 | 2.819608 | CAGTTGATCCGTTGGGTCAAAT | 59.180 | 45.455 | 12.84 | 9.41 | 36.10 | 2.32 |
859 | 909 | 2.226330 | CAGTTGATCCGTTGGGTCAAA | 58.774 | 47.619 | 12.84 | 0.00 | 36.10 | 2.69 |
860 | 910 | 1.544537 | CCAGTTGATCCGTTGGGTCAA | 60.545 | 52.381 | 7.43 | 7.43 | 33.69 | 3.18 |
861 | 911 | 0.036164 | CCAGTTGATCCGTTGGGTCA | 59.964 | 55.000 | 0.00 | 0.00 | 33.83 | 4.02 |
862 | 912 | 0.036306 | ACCAGTTGATCCGTTGGGTC | 59.964 | 55.000 | 10.20 | 0.00 | 34.99 | 4.46 |
863 | 913 | 0.476771 | AACCAGTTGATCCGTTGGGT | 59.523 | 50.000 | 10.20 | 2.16 | 34.99 | 4.51 |
864 | 914 | 0.881118 | CAACCAGTTGATCCGTTGGG | 59.119 | 55.000 | 4.47 | 0.06 | 42.93 | 4.12 |
865 | 915 | 1.604604 | ACAACCAGTTGATCCGTTGG | 58.395 | 50.000 | 17.06 | 5.26 | 42.93 | 3.77 |
866 | 916 | 6.093495 | ACAATATACAACCAGTTGATCCGTTG | 59.907 | 38.462 | 17.06 | 14.70 | 42.93 | 4.10 |
867 | 917 | 6.177610 | ACAATATACAACCAGTTGATCCGTT | 58.822 | 36.000 | 17.06 | 3.13 | 42.93 | 4.44 |
868 | 918 | 5.741011 | ACAATATACAACCAGTTGATCCGT | 58.259 | 37.500 | 17.06 | 3.98 | 42.93 | 4.69 |
869 | 919 | 6.677781 | AACAATATACAACCAGTTGATCCG | 57.322 | 37.500 | 17.06 | 3.43 | 42.93 | 4.18 |
870 | 920 | 8.184192 | CAGAAACAATATACAACCAGTTGATCC | 58.816 | 37.037 | 17.06 | 0.00 | 42.93 | 3.36 |
871 | 921 | 7.698130 | GCAGAAACAATATACAACCAGTTGATC | 59.302 | 37.037 | 17.06 | 0.00 | 42.93 | 2.92 |
872 | 922 | 7.394359 | AGCAGAAACAATATACAACCAGTTGAT | 59.606 | 33.333 | 17.06 | 8.61 | 42.93 | 2.57 |
873 | 923 | 6.714810 | AGCAGAAACAATATACAACCAGTTGA | 59.285 | 34.615 | 17.06 | 1.85 | 42.93 | 3.18 |
874 | 924 | 6.913170 | AGCAGAAACAATATACAACCAGTTG | 58.087 | 36.000 | 8.95 | 8.95 | 45.58 | 3.16 |
875 | 925 | 6.942576 | AGAGCAGAAACAATATACAACCAGTT | 59.057 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
876 | 926 | 6.476378 | AGAGCAGAAACAATATACAACCAGT | 58.524 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
877 | 927 | 6.992063 | AGAGCAGAAACAATATACAACCAG | 57.008 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
878 | 928 | 7.168219 | AGAAGAGCAGAAACAATATACAACCA | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
879 | 929 | 7.464710 | CGAGAAGAGCAGAAACAATATACAACC | 60.465 | 40.741 | 0.00 | 0.00 | 0.00 | 3.77 |
880 | 930 | 7.394872 | CGAGAAGAGCAGAAACAATATACAAC | 58.605 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
881 | 931 | 6.036083 | GCGAGAAGAGCAGAAACAATATACAA | 59.964 | 38.462 | 0.00 | 0.00 | 34.19 | 2.41 |
882 | 932 | 5.520288 | GCGAGAAGAGCAGAAACAATATACA | 59.480 | 40.000 | 0.00 | 0.00 | 34.19 | 2.29 |
952 | 1002 | 3.391382 | GGTCTCTGTGGTCGGGGG | 61.391 | 72.222 | 0.00 | 0.00 | 0.00 | 5.40 |
954 | 1004 | 0.972983 | AGATGGTCTCTGTGGTCGGG | 60.973 | 60.000 | 0.00 | 0.00 | 31.12 | 5.14 |
955 | 1005 | 0.457851 | GAGATGGTCTCTGTGGTCGG | 59.542 | 60.000 | 0.00 | 0.00 | 40.30 | 4.79 |
956 | 1006 | 0.457851 | GGAGATGGTCTCTGTGGTCG | 59.542 | 60.000 | 6.89 | 0.00 | 42.95 | 4.79 |
957 | 1007 | 1.480137 | CTGGAGATGGTCTCTGTGGTC | 59.520 | 57.143 | 6.89 | 0.00 | 42.95 | 4.02 |
959 | 1009 | 0.177604 | GCTGGAGATGGTCTCTGTGG | 59.822 | 60.000 | 6.89 | 0.00 | 42.95 | 4.17 |
960 | 1010 | 0.179116 | CGCTGGAGATGGTCTCTGTG | 60.179 | 60.000 | 6.89 | 4.08 | 42.95 | 3.66 |
961 | 1011 | 0.323816 | TCGCTGGAGATGGTCTCTGT | 60.324 | 55.000 | 6.89 | 0.00 | 42.95 | 3.41 |
962 | 1012 | 0.820226 | TTCGCTGGAGATGGTCTCTG | 59.180 | 55.000 | 6.89 | 2.59 | 42.95 | 3.35 |
963 | 1013 | 0.820871 | GTTCGCTGGAGATGGTCTCT | 59.179 | 55.000 | 6.89 | 0.00 | 42.95 | 3.10 |
964 | 1014 | 0.532573 | TGTTCGCTGGAGATGGTCTC | 59.467 | 55.000 | 0.00 | 0.00 | 42.66 | 3.36 |
965 | 1015 | 1.137872 | GATGTTCGCTGGAGATGGTCT | 59.862 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
966 | 1016 | 1.576356 | GATGTTCGCTGGAGATGGTC | 58.424 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
986 | 1036 | 1.301558 | GCCATCAGATCCGGCAGAG | 60.302 | 63.158 | 6.85 | 0.00 | 45.52 | 3.35 |
1041 | 1091 | 1.087501 | GCTTGTCGATTTGGAGGGTC | 58.912 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1123 | 1173 | 2.492088 | TGACCACTATGTTGACTCTCCG | 59.508 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1134 | 1184 | 0.036105 | TGGCAGCAGTGACCACTATG | 60.036 | 55.000 | 1.95 | 6.32 | 40.20 | 2.23 |
1172 | 1236 | 2.894387 | GTCCATCCAGCAGCTCGC | 60.894 | 66.667 | 0.00 | 0.47 | 42.91 | 5.03 |
1189 | 1268 | 0.898320 | TCCTCCAGAAGAGCGAAAGG | 59.102 | 55.000 | 0.00 | 0.00 | 41.74 | 3.11 |
1284 | 1397 | 2.413142 | GCTTGGATCTGCAGGTGCC | 61.413 | 63.158 | 16.61 | 13.84 | 41.18 | 5.01 |
1287 | 1400 | 1.220206 | CTCGCTTGGATCTGCAGGT | 59.780 | 57.895 | 15.13 | 6.50 | 0.00 | 4.00 |
1307 | 1420 | 2.294078 | GGGACTGGGAGTGGGACTG | 61.294 | 68.421 | 0.00 | 0.00 | 0.00 | 3.51 |
1311 | 1424 | 3.011517 | CCTGGGACTGGGAGTGGG | 61.012 | 72.222 | 0.00 | 0.00 | 44.20 | 4.61 |
1319 | 1432 | 1.258445 | ACGCTTACCTCCTGGGACTG | 61.258 | 60.000 | 0.00 | 0.00 | 38.76 | 3.51 |
1320 | 1433 | 0.333993 | TACGCTTACCTCCTGGGACT | 59.666 | 55.000 | 0.00 | 0.00 | 38.76 | 3.85 |
1325 | 1444 | 4.113354 | GACAGATTTACGCTTACCTCCTG | 58.887 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
1350 | 1469 | 3.010420 | GCAGACTTGGATTACTTGGGTC | 58.990 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
1393 | 1520 | 6.346518 | CGACCAATTTACATTTTTGGAGCAAC | 60.347 | 38.462 | 7.85 | 0.00 | 42.02 | 4.17 |
1407 | 1540 | 6.984474 | TCCTTGATCAGATACGACCAATTTAC | 59.016 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
1438 | 2226 | 5.934935 | TCGTGGACCAGAAATTAAAGAAC | 57.065 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
1517 | 2326 | 2.029020 | CGCCCCTCGATATCTCATTGAA | 60.029 | 50.000 | 0.34 | 0.00 | 41.67 | 2.69 |
1547 | 2362 | 1.200020 | GCCAACATTGCTCTGTGGTAC | 59.800 | 52.381 | 0.00 | 0.00 | 0.00 | 3.34 |
1599 | 2426 | 5.914898 | TCCGTTATCTCTTTCTGTGATCA | 57.085 | 39.130 | 0.00 | 0.00 | 32.05 | 2.92 |
1642 | 2469 | 2.370281 | ACTCATTGCTACAGTGTCGG | 57.630 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1643 | 2470 | 5.405571 | ACTTAAACTCATTGCTACAGTGTCG | 59.594 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1672 | 2504 | 1.990563 | GATGTACCGTTCGTCTTGGTG | 59.009 | 52.381 | 0.00 | 0.00 | 37.20 | 4.17 |
1675 | 2507 | 3.770666 | AGATGATGTACCGTTCGTCTTG | 58.229 | 45.455 | 6.51 | 0.00 | 35.23 | 3.02 |
1761 | 2593 | 6.512514 | TTAAGTACCTTGAAGGGTTTGGTA | 57.487 | 37.500 | 16.78 | 0.00 | 40.58 | 3.25 |
1846 | 2782 | 7.957484 | CGCCTCAAGCATATGTATATAAACAAC | 59.043 | 37.037 | 4.29 | 0.00 | 44.04 | 3.32 |
1861 | 2797 | 0.322816 | ACCACAATCGCCTCAAGCAT | 60.323 | 50.000 | 0.00 | 0.00 | 44.04 | 3.79 |
1884 | 2827 | 2.488153 | GCGGGGGATGTGCTTATTAATC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
1893 | 2836 | 0.820871 | TTATTTTGCGGGGGATGTGC | 59.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1895 | 2838 | 5.941555 | TTTATTTATTTTGCGGGGGATGT | 57.058 | 34.783 | 0.00 | 0.00 | 0.00 | 3.06 |
1896 | 2839 | 6.584563 | CGTATTTATTTATTTTGCGGGGGATG | 59.415 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
1899 | 2842 | 4.682401 | GCGTATTTATTTATTTTGCGGGGG | 59.318 | 41.667 | 0.00 | 0.00 | 0.00 | 5.40 |
1900 | 2843 | 5.174216 | GTGCGTATTTATTTATTTTGCGGGG | 59.826 | 40.000 | 0.00 | 0.00 | 0.00 | 5.73 |
1902 | 2845 | 5.974751 | AGGTGCGTATTTATTTATTTTGCGG | 59.025 | 36.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1903 | 2846 | 6.910433 | AGAGGTGCGTATTTATTTATTTTGCG | 59.090 | 34.615 | 0.00 | 0.00 | 0.00 | 4.85 |
1904 | 2847 | 8.628882 | AAGAGGTGCGTATTTATTTATTTTGC | 57.371 | 30.769 | 0.00 | 0.00 | 0.00 | 3.68 |
1941 | 2884 | 2.603473 | TAGGCTCACCGGTGCTGT | 60.603 | 61.111 | 30.25 | 15.74 | 42.76 | 4.40 |
1961 | 2904 | 2.236766 | GCTGGATGAGCTGGCAATTAT | 58.763 | 47.619 | 0.00 | 0.00 | 45.21 | 1.28 |
1983 | 2926 | 2.537214 | GACCGTCGTCTCTTTCGTTTTT | 59.463 | 45.455 | 0.00 | 0.00 | 35.99 | 1.94 |
1988 | 2931 | 0.039798 | TTGGACCGTCGTCTCTTTCG | 60.040 | 55.000 | 0.00 | 0.00 | 39.15 | 3.46 |
2081 | 3030 | 2.467826 | GGCCGCACTTGATCTCTGC | 61.468 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
2104 | 3053 | 0.035056 | GCATACCTGCTGTCCCACTT | 60.035 | 55.000 | 0.00 | 0.00 | 45.32 | 3.16 |
2206 | 3310 | 5.158101 | TCTAATTGTTTTTCGACGCAACA | 57.842 | 34.783 | 0.00 | 0.00 | 0.00 | 3.33 |
2207 | 3311 | 5.679792 | ACTTCTAATTGTTTTTCGACGCAAC | 59.320 | 36.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2334 | 3580 | 2.005370 | TTCTGGTGGACGAGTTACCT | 57.995 | 50.000 | 10.46 | 0.00 | 35.51 | 3.08 |
2337 | 3583 | 2.038033 | CCCTTTTCTGGTGGACGAGTTA | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2338 | 3584 | 1.202770 | CCCTTTTCTGGTGGACGAGTT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
2343 | 3589 | 2.951229 | TTCTCCCTTTTCTGGTGGAC | 57.049 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2346 | 3592 | 3.439857 | TCCATTCTCCCTTTTCTGGTG | 57.560 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
2350 | 3596 | 5.453158 | GGAATCATCCATTCTCCCTTTTCT | 58.547 | 41.667 | 0.00 | 0.00 | 45.79 | 2.52 |
2370 | 3616 | 8.511321 | GTGTTAGTCACATCAATTTGTATGGAA | 58.489 | 33.333 | 11.14 | 0.81 | 45.51 | 3.53 |
2389 | 3635 | 1.420138 | CCAAGGGGTGACTGTGTTAGT | 59.580 | 52.381 | 0.00 | 0.00 | 44.02 | 2.24 |
2429 | 3678 | 5.983720 | TGACTAGCTATTTTTCGTATCCTGC | 59.016 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2471 | 3720 | 4.214332 | GCTTGAGAATTTCAGTCGTTTCCT | 59.786 | 41.667 | 0.00 | 0.00 | 37.07 | 3.36 |
2476 | 3725 | 4.883083 | TGTAGCTTGAGAATTTCAGTCGT | 58.117 | 39.130 | 0.00 | 0.00 | 37.07 | 4.34 |
2477 | 3726 | 5.220548 | CCATGTAGCTTGAGAATTTCAGTCG | 60.221 | 44.000 | 0.00 | 0.00 | 37.07 | 4.18 |
2484 | 3733 | 4.101585 | TCCGATCCATGTAGCTTGAGAATT | 59.898 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
2525 | 3801 | 5.682234 | TGATGTTGTACTCTGGTGATGAT | 57.318 | 39.130 | 0.00 | 0.00 | 0.00 | 2.45 |
2526 | 3802 | 5.682234 | ATGATGTTGTACTCTGGTGATGA | 57.318 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
2527 | 3803 | 7.212274 | TGATATGATGTTGTACTCTGGTGATG | 58.788 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
2528 | 3804 | 7.365497 | TGATATGATGTTGTACTCTGGTGAT | 57.635 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2529 | 3805 | 6.683861 | GCTGATATGATGTTGTACTCTGGTGA | 60.684 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
2530 | 3806 | 5.464722 | GCTGATATGATGTTGTACTCTGGTG | 59.535 | 44.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2531 | 3807 | 5.129320 | TGCTGATATGATGTTGTACTCTGGT | 59.871 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2532 | 3808 | 5.464722 | GTGCTGATATGATGTTGTACTCTGG | 59.535 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2533 | 3809 | 5.464722 | GGTGCTGATATGATGTTGTACTCTG | 59.535 | 44.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2534 | 3810 | 5.365025 | AGGTGCTGATATGATGTTGTACTCT | 59.635 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2535 | 3811 | 5.605534 | AGGTGCTGATATGATGTTGTACTC | 58.394 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2536 | 3812 | 5.129320 | TGAGGTGCTGATATGATGTTGTACT | 59.871 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2537 | 3813 | 5.359756 | TGAGGTGCTGATATGATGTTGTAC | 58.640 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2538 | 3814 | 5.363580 | TCTGAGGTGCTGATATGATGTTGTA | 59.636 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2539 | 3815 | 4.162888 | TCTGAGGTGCTGATATGATGTTGT | 59.837 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
2540 | 3816 | 4.700700 | TCTGAGGTGCTGATATGATGTTG | 58.299 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
2541 | 3817 | 5.121811 | GTTCTGAGGTGCTGATATGATGTT | 58.878 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
2542 | 3818 | 4.162888 | TGTTCTGAGGTGCTGATATGATGT | 59.837 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
2543 | 3819 | 4.700700 | TGTTCTGAGGTGCTGATATGATG | 58.299 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
2544 | 3820 | 5.071384 | TGATGTTCTGAGGTGCTGATATGAT | 59.929 | 40.000 | 0.00 | 0.00 | 0.00 | 2.45 |
2545 | 3821 | 4.406649 | TGATGTTCTGAGGTGCTGATATGA | 59.593 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
2546 | 3822 | 4.700700 | TGATGTTCTGAGGTGCTGATATG | 58.299 | 43.478 | 0.00 | 0.00 | 0.00 | 1.78 |
2547 | 3823 | 5.104610 | ACTTGATGTTCTGAGGTGCTGATAT | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 1.63 |
2548 | 3824 | 4.223700 | ACTTGATGTTCTGAGGTGCTGATA | 59.776 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
2724 | 4006 | 1.339055 | TGCCTTTCCACTTCTGGATCG | 60.339 | 52.381 | 0.00 | 0.00 | 46.64 | 3.69 |
2751 | 4033 | 3.791545 | ACACCCAAACCCATATCCTATGT | 59.208 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2808 | 4090 | 5.308014 | TCTTGAGAAACAAAGCTCAGCATA | 58.692 | 37.500 | 0.00 | 0.00 | 41.67 | 3.14 |
2812 | 4094 | 6.129053 | ACTTTCTTGAGAAACAAAGCTCAG | 57.871 | 37.500 | 2.16 | 0.00 | 41.67 | 3.35 |
2835 | 4117 | 3.939740 | AAGCAGCCTATTCCTTCATGA | 57.060 | 42.857 | 0.00 | 0.00 | 0.00 | 3.07 |
2875 | 4157 | 7.361031 | CCTCTTTGATTTGACATGACTTCTCAG | 60.361 | 40.741 | 0.00 | 0.00 | 0.00 | 3.35 |
2879 | 4161 | 5.474876 | ACCCTCTTTGATTTGACATGACTTC | 59.525 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2925 | 4213 | 4.210331 | GGGCATCTTTCTTGTCATACCAT | 58.790 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
2929 | 4217 | 3.904800 | TCGGGCATCTTTCTTGTCATA | 57.095 | 42.857 | 0.00 | 0.00 | 0.00 | 2.15 |
2940 | 4228 | 0.394352 | GTTGGTTCCATCGGGCATCT | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2944 | 4235 | 1.676006 | CAATAGTTGGTTCCATCGGGC | 59.324 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
2945 | 4236 | 2.297701 | CCAATAGTTGGTTCCATCGGG | 58.702 | 52.381 | 0.54 | 0.00 | 45.93 | 5.14 |
2970 | 4261 | 4.037208 | CCATTGGCACTATGAGGCTTAAAG | 59.963 | 45.833 | 0.71 | 0.00 | 0.00 | 1.85 |
2988 | 4279 | 4.624024 | GTCACAAGAATCACATTGCCATTG | 59.376 | 41.667 | 0.00 | 0.00 | 0.00 | 2.82 |
3025 | 4316 | 3.742433 | TCCAATCATTTTTGCAACGGT | 57.258 | 38.095 | 0.00 | 0.00 | 0.00 | 4.83 |
3053 | 4344 | 9.456147 | TTTCAATAGTAGCTAACTTAATTGGCA | 57.544 | 29.630 | 0.00 | 0.00 | 46.85 | 4.92 |
3090 | 4381 | 9.941325 | AAAGCACATGATTTGAATAATAACCAA | 57.059 | 25.926 | 0.00 | 0.00 | 31.82 | 3.67 |
3099 | 4390 | 7.094975 | CCATCAACAAAAGCACATGATTTGAAT | 60.095 | 33.333 | 17.95 | 9.79 | 37.46 | 2.57 |
3114 | 4405 | 8.859090 | AGACATTCATAGTTTCCATCAACAAAA | 58.141 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
3119 | 4410 | 7.174413 | TCCAAGACATTCATAGTTTCCATCAA | 58.826 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3177 | 4468 | 4.761739 | GCTAACGGGTTACCCTTTAACTTT | 59.238 | 41.667 | 19.31 | 2.84 | 42.67 | 2.66 |
3189 | 4480 | 0.970640 | TCACTGCTGCTAACGGGTTA | 59.029 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3207 | 4498 | 3.965347 | TCCTTAATAGTGCCCCTGTAGTC | 59.035 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
3258 | 4549 | 9.716531 | GATTTCCAATTTTCTTCCTTGAGAATT | 57.283 | 29.630 | 0.00 | 0.00 | 35.70 | 2.17 |
3288 | 4579 | 2.254152 | TGATGCCTCCACTAAGTCCT | 57.746 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3423 | 6709 | 4.335416 | TCACAAATCCCTGAGAAATCCAC | 58.665 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
3556 | 6881 | 3.192844 | TGACCGCGTAGAGAGAATTCTTT | 59.807 | 43.478 | 9.87 | 3.31 | 32.53 | 2.52 |
3574 | 6899 | 7.047891 | TCACACATAGAATACCAAATCTGACC | 58.952 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
3630 | 6967 | 2.890808 | TCCTCGCATATTCAGTCACC | 57.109 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3631 | 6968 | 5.378292 | TCTATCCTCGCATATTCAGTCAC | 57.622 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
3632 | 6969 | 5.105595 | CCATCTATCCTCGCATATTCAGTCA | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3641 | 6978 | 1.274728 | GCAGACCATCTATCCTCGCAT | 59.725 | 52.381 | 0.00 | 0.00 | 0.00 | 4.73 |
3648 | 6985 | 5.521906 | TCTTACACTGCAGACCATCTATC | 57.478 | 43.478 | 23.35 | 0.00 | 0.00 | 2.08 |
3675 | 7012 | 9.745880 | ATTGACAAATAGTGTATAGTCGGTAAG | 57.254 | 33.333 | 0.00 | 0.00 | 41.96 | 2.34 |
3691 | 7028 | 7.880713 | TGCAGAACCAGTTACTATTGACAAATA | 59.119 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3783 | 7120 | 8.564574 | GTTCTCAATTTGGTAACTGATGTAACA | 58.435 | 33.333 | 0.00 | 0.00 | 37.61 | 2.41 |
3867 | 7204 | 3.394719 | GCGTAAATTTTGGGCCTTTTGA | 58.605 | 40.909 | 4.53 | 0.00 | 0.00 | 2.69 |
3907 | 7244 | 6.317857 | GCACTTGAAACAGATAAGTGGATTC | 58.682 | 40.000 | 15.51 | 0.00 | 46.94 | 2.52 |
3908 | 7245 | 5.183904 | GGCACTTGAAACAGATAAGTGGATT | 59.816 | 40.000 | 15.51 | 0.00 | 46.94 | 3.01 |
4008 | 7345 | 1.072489 | TGTGGCACAATCCCGTCTAAA | 59.928 | 47.619 | 19.74 | 0.00 | 44.16 | 1.85 |
4011 | 7348 | 0.606401 | CTTGTGGCACAATCCCGTCT | 60.606 | 55.000 | 31.20 | 0.00 | 44.16 | 4.18 |
4033 | 7379 | 8.655651 | ACTTGAAGAAGAAGAAAAGTACTGAG | 57.344 | 34.615 | 0.00 | 0.00 | 32.98 | 3.35 |
4045 | 7391 | 8.394121 | GCCAACATCTAATACTTGAAGAAGAAG | 58.606 | 37.037 | 0.00 | 0.00 | 32.98 | 2.85 |
4049 | 7395 | 7.394016 | TGAGCCAACATCTAATACTTGAAGAA | 58.606 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
4079 | 7425 | 5.088026 | AGCTATTGGGTAGAGAAGTATCCC | 58.912 | 45.833 | 0.00 | 0.00 | 38.68 | 3.85 |
4099 | 7445 | 4.337555 | CAGGCTAACAAGATTATGCAAGCT | 59.662 | 41.667 | 0.00 | 0.00 | 33.91 | 3.74 |
4258 | 7613 | 3.356290 | ACACTCCAAGTTGAACAAGCTT | 58.644 | 40.909 | 3.87 | 0.00 | 0.00 | 3.74 |
4364 | 7719 | 3.430895 | CACTGAAAATGCATGCTTCCAAC | 59.569 | 43.478 | 20.33 | 6.81 | 0.00 | 3.77 |
4365 | 7720 | 3.555377 | CCACTGAAAATGCATGCTTCCAA | 60.555 | 43.478 | 20.33 | 0.00 | 0.00 | 3.53 |
4389 | 7762 | 7.178451 | TCAAATCTAGTGTCACTGACATCCTTA | 59.822 | 37.037 | 16.03 | 5.60 | 44.63 | 2.69 |
4391 | 7794 | 5.481824 | TCAAATCTAGTGTCACTGACATCCT | 59.518 | 40.000 | 16.03 | 10.64 | 44.63 | 3.24 |
4434 | 7837 | 4.020751 | TCAAGACCCTCAATCACTTCTCTG | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 3.35 |
4549 | 7952 | 1.718396 | TCAAGATGAAGCGTCTGCAG | 58.282 | 50.000 | 7.63 | 7.63 | 46.23 | 4.41 |
4704 | 8107 | 6.393990 | AGTACTTGAGCATCTCACTAACTTG | 58.606 | 40.000 | 0.00 | 0.00 | 40.46 | 3.16 |
4748 | 8151 | 1.270274 | TCCGCAGTGCTCGTAAACTAA | 59.730 | 47.619 | 14.33 | 0.00 | 0.00 | 2.24 |
4752 | 8155 | 0.800683 | CGATCCGCAGTGCTCGTAAA | 60.801 | 55.000 | 14.33 | 0.00 | 0.00 | 2.01 |
4797 | 8200 | 8.954950 | AATTATCATCGTTCTCAAACAGATCT | 57.045 | 30.769 | 0.00 | 0.00 | 34.93 | 2.75 |
4905 | 8308 | 2.031495 | AGGTAGCTGAAGGTGGAAGT | 57.969 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4943 | 8346 | 4.461198 | AGACGGAAATCTTGAAACCACTT | 58.539 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
4946 | 8349 | 5.800296 | TCATAGACGGAAATCTTGAAACCA | 58.200 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
4964 | 8370 | 5.468540 | TTCACCCGATGATACCTTCATAG | 57.531 | 43.478 | 0.00 | 0.00 | 45.29 | 2.23 |
4980 | 8386 | 6.413783 | TCCCAAATTTCTAACTTTTCACCC | 57.586 | 37.500 | 0.00 | 0.00 | 0.00 | 4.61 |
4999 | 8405 | 1.765904 | TCTGCGGTAATTAGCATCCCA | 59.234 | 47.619 | 14.62 | 5.17 | 42.95 | 4.37 |
5015 | 8423 | 0.249238 | ACAAGATCGATCGCCTCTGC | 60.249 | 55.000 | 19.33 | 0.00 | 0.00 | 4.26 |
5045 | 8463 | 7.015098 | ACACCAAAATTTTGTCATCCAGTATGA | 59.985 | 33.333 | 25.25 | 0.00 | 37.51 | 2.15 |
5046 | 8464 | 7.153985 | ACACCAAAATTTTGTCATCCAGTATG | 58.846 | 34.615 | 25.25 | 10.79 | 36.45 | 2.39 |
5133 | 10541 | 4.752101 | AGATGACTGAAACCTTCAAACGAG | 59.248 | 41.667 | 0.00 | 0.00 | 39.58 | 4.18 |
5186 | 10594 | 6.560493 | GTGAAGAGAAAAGTTTTTCACAGC | 57.440 | 37.500 | 19.17 | 8.96 | 46.81 | 4.40 |
5209 | 10617 | 1.687563 | TCAATGGCTGGCATCTCATG | 58.312 | 50.000 | 17.56 | 11.72 | 0.00 | 3.07 |
5224 | 10638 | 3.479489 | TCACAGCTGTCACATGTTCAAT | 58.521 | 40.909 | 18.64 | 0.00 | 0.00 | 2.57 |
5230 | 10644 | 1.069432 | GCAGTTCACAGCTGTCACATG | 60.069 | 52.381 | 18.64 | 14.59 | 36.42 | 3.21 |
5251 | 10665 | 8.800370 | AGACTTTTAAGAGATGGGAAAGAATC | 57.200 | 34.615 | 0.00 | 0.00 | 32.97 | 2.52 |
5254 | 10668 | 7.016661 | ACTGAGACTTTTAAGAGATGGGAAAGA | 59.983 | 37.037 | 0.00 | 0.00 | 32.97 | 2.52 |
5478 | 11100 | 2.019984 | GATGGAATGTGCAAGAGTCCC | 58.980 | 52.381 | 10.17 | 0.00 | 0.00 | 4.46 |
5567 | 11189 | 2.393271 | AAATCCAGAGAAGCAGTCCG | 57.607 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5641 | 11281 | 2.759355 | ACTTCCATTCTCGGGGTCATA | 58.241 | 47.619 | 0.00 | 0.00 | 0.00 | 2.15 |
5648 | 11288 | 4.275936 | ACACAAAAGAACTTCCATTCTCGG | 59.724 | 41.667 | 0.00 | 0.00 | 37.99 | 4.63 |
5649 | 11289 | 5.424121 | ACACAAAAGAACTTCCATTCTCG | 57.576 | 39.130 | 0.00 | 0.00 | 37.99 | 4.04 |
5785 | 11453 | 7.676683 | TTTTAAGGCTGGTGATATCTCTAGT | 57.323 | 36.000 | 16.51 | 3.48 | 0.00 | 2.57 |
5815 | 11483 | 2.196595 | ACCTGGGCTGAAGCTTACATA | 58.803 | 47.619 | 0.00 | 0.00 | 41.70 | 2.29 |
5823 | 11492 | 0.971386 | ATTGCAAACCTGGGCTGAAG | 59.029 | 50.000 | 1.71 | 0.00 | 0.00 | 3.02 |
5825 | 11494 | 0.112995 | AGATTGCAAACCTGGGCTGA | 59.887 | 50.000 | 1.71 | 0.00 | 0.00 | 4.26 |
5939 | 11653 | 1.422531 | AAGCCTTTCCAAACATGGCA | 58.577 | 45.000 | 0.00 | 0.00 | 45.42 | 4.92 |
5940 | 11654 | 2.145536 | CAAAGCCTTTCCAAACATGGC | 58.854 | 47.619 | 0.00 | 0.00 | 43.52 | 4.40 |
5965 | 11733 | 3.054361 | GTGGTAAGGACAGATGGGTCATT | 60.054 | 47.826 | 0.00 | 0.00 | 43.40 | 2.57 |
6026 | 11795 | 4.881850 | TCCTCACTTTCAAGAAACCAAGTC | 59.118 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
6390 | 12163 | 0.663153 | ACTCAAGAACAACCAAGCGC | 59.337 | 50.000 | 0.00 | 0.00 | 0.00 | 5.92 |
6401 | 12174 | 8.289618 | GCATATGACACAACTTTAACTCAAGAA | 58.710 | 33.333 | 6.97 | 0.00 | 0.00 | 2.52 |
6436 | 12210 | 7.542477 | GGGTATGTCGACTCTGAATATAACATG | 59.458 | 40.741 | 17.92 | 0.00 | 0.00 | 3.21 |
6453 | 12413 | 4.126437 | TGCACAATTATGAGGGTATGTCG | 58.874 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
6519 | 12498 | 7.357303 | ACAACAAAACATACCAGTTTATCGAC | 58.643 | 34.615 | 0.00 | 0.00 | 40.60 | 4.20 |
6553 | 12532 | 7.670605 | ATGGGAAATTCATCATTCAGTTGAT | 57.329 | 32.000 | 0.00 | 0.00 | 36.79 | 2.57 |
6554 | 12533 | 7.398047 | AGAATGGGAAATTCATCATTCAGTTGA | 59.602 | 33.333 | 26.76 | 0.00 | 44.50 | 3.18 |
6555 | 12534 | 7.553334 | AGAATGGGAAATTCATCATTCAGTTG | 58.447 | 34.615 | 26.76 | 0.00 | 44.50 | 3.16 |
6556 | 12535 | 7.729124 | AGAATGGGAAATTCATCATTCAGTT | 57.271 | 32.000 | 26.76 | 14.27 | 44.50 | 3.16 |
6557 | 12536 | 7.179694 | ACAAGAATGGGAAATTCATCATTCAGT | 59.820 | 33.333 | 26.76 | 23.08 | 44.50 | 3.41 |
6559 | 12538 | 7.484993 | ACAAGAATGGGAAATTCATCATTCA | 57.515 | 32.000 | 26.76 | 7.17 | 44.50 | 2.57 |
6560 | 12539 | 8.782339 | AAACAAGAATGGGAAATTCATCATTC | 57.218 | 30.769 | 22.07 | 22.07 | 43.22 | 2.67 |
6575 | 12567 | 4.072131 | TCTCCCGGAAGAAAACAAGAATG | 58.928 | 43.478 | 0.73 | 0.00 | 0.00 | 2.67 |
6697 | 12879 | 2.420022 | ACTCAAAATGGTATGTGCGAGC | 59.580 | 45.455 | 0.00 | 0.00 | 0.00 | 5.03 |
6699 | 12881 | 6.751514 | ATTAACTCAAAATGGTATGTGCGA | 57.248 | 33.333 | 0.00 | 0.00 | 0.00 | 5.10 |
6708 | 12890 | 7.330262 | AGGGCACATTTATTAACTCAAAATGG | 58.670 | 34.615 | 10.68 | 2.99 | 42.31 | 3.16 |
6738 | 12920 | 3.466836 | AGCATATGTGTGGTATGTTCCG | 58.533 | 45.455 | 4.29 | 0.00 | 33.19 | 4.30 |
6781 | 13020 | 3.138304 | GTGCAGGACTGTGACATGTTTA | 58.862 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
6795 | 16329 | 2.235650 | CCTGATCTCTGAAAGTGCAGGA | 59.764 | 50.000 | 0.00 | 0.00 | 43.73 | 3.86 |
6901 | 16440 | 6.674066 | AGAGAAGTAGCTTCATTAGTATCGC | 58.326 | 40.000 | 10.91 | 0.00 | 42.37 | 4.58 |
6902 | 16441 | 8.132362 | ACAAGAGAAGTAGCTTCATTAGTATCG | 58.868 | 37.037 | 10.91 | 0.00 | 42.37 | 2.92 |
6908 | 16449 | 6.759272 | ACACACAAGAGAAGTAGCTTCATTA | 58.241 | 36.000 | 10.91 | 0.00 | 42.37 | 1.90 |
6925 | 16466 | 5.244626 | GGAGGGAGTACTAAACTACACACAA | 59.755 | 44.000 | 0.00 | 0.00 | 41.38 | 3.33 |
6934 | 16475 | 5.431179 | TTTGGATGGAGGGAGTACTAAAC | 57.569 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
6945 | 16486 | 4.760530 | TGAGACACTATTTGGATGGAGG | 57.239 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
6946 | 16487 | 5.738909 | AGTTGAGACACTATTTGGATGGAG | 58.261 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
6947 | 16488 | 5.762179 | AGTTGAGACACTATTTGGATGGA | 57.238 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
6949 | 16490 | 8.553459 | ACTAAAGTTGAGACACTATTTGGATG | 57.447 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
7002 | 16543 | 9.853177 | CCTCTGTCCCAAAATAAGTATCTTAAT | 57.147 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
7003 | 16544 | 8.272173 | CCCTCTGTCCCAAAATAAGTATCTTAA | 58.728 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
7004 | 16545 | 7.626084 | TCCCTCTGTCCCAAAATAAGTATCTTA | 59.374 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
7005 | 16546 | 6.447084 | TCCCTCTGTCCCAAAATAAGTATCTT | 59.553 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
7006 | 16547 | 5.970640 | TCCCTCTGTCCCAAAATAAGTATCT | 59.029 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
7007 | 16548 | 6.126739 | ACTCCCTCTGTCCCAAAATAAGTATC | 60.127 | 42.308 | 0.00 | 0.00 | 0.00 | 2.24 |
7008 | 16549 | 5.731678 | ACTCCCTCTGTCCCAAAATAAGTAT | 59.268 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
7009 | 16550 | 5.098663 | ACTCCCTCTGTCCCAAAATAAGTA | 58.901 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
7010 | 16551 | 3.916989 | ACTCCCTCTGTCCCAAAATAAGT | 59.083 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
7011 | 16552 | 4.576330 | ACTCCCTCTGTCCCAAAATAAG | 57.424 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
7012 | 16553 | 5.098663 | AGTACTCCCTCTGTCCCAAAATAA | 58.901 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
7013 | 16554 | 4.695606 | AGTACTCCCTCTGTCCCAAAATA | 58.304 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
7014 | 16555 | 3.532102 | AGTACTCCCTCTGTCCCAAAAT | 58.468 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
7015 | 16556 | 2.986050 | AGTACTCCCTCTGTCCCAAAA | 58.014 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
7016 | 16557 | 2.715763 | AGTACTCCCTCTGTCCCAAA | 57.284 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
7017 | 16558 | 3.687551 | CGATAGTACTCCCTCTGTCCCAA | 60.688 | 52.174 | 0.00 | 0.00 | 0.00 | 4.12 |
7018 | 16559 | 2.158652 | CGATAGTACTCCCTCTGTCCCA | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 4.37 |
7019 | 16560 | 2.506444 | CGATAGTACTCCCTCTGTCCC | 58.494 | 57.143 | 0.00 | 0.00 | 0.00 | 4.46 |
7034 | 16575 | 9.888878 | TTTTATCTTCTTACCACGATACGATAG | 57.111 | 33.333 | 0.00 | 0.00 | 46.19 | 2.08 |
7035 | 16576 | 9.888878 | CTTTTATCTTCTTACCACGATACGATA | 57.111 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
7036 | 16577 | 8.627403 | TCTTTTATCTTCTTACCACGATACGAT | 58.373 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
7037 | 16578 | 7.988737 | TCTTTTATCTTCTTACCACGATACGA | 58.011 | 34.615 | 0.00 | 0.00 | 0.00 | 3.43 |
7038 | 16579 | 8.624701 | TTCTTTTATCTTCTTACCACGATACG | 57.375 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
7040 | 16581 | 9.595823 | CCTTTCTTTTATCTTCTTACCACGATA | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
7041 | 16582 | 8.319146 | TCCTTTCTTTTATCTTCTTACCACGAT | 58.681 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
7042 | 16583 | 7.601508 | GTCCTTTCTTTTATCTTCTTACCACGA | 59.398 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
7043 | 16584 | 7.386848 | TGTCCTTTCTTTTATCTTCTTACCACG | 59.613 | 37.037 | 0.00 | 0.00 | 0.00 | 4.94 |
7044 | 16585 | 8.617290 | TGTCCTTTCTTTTATCTTCTTACCAC | 57.383 | 34.615 | 0.00 | 0.00 | 0.00 | 4.16 |
7165 | 16837 | 2.535534 | CGATGTAACTGCAATGCTCGTG | 60.536 | 50.000 | 6.82 | 0.00 | 0.00 | 4.35 |
7179 | 16851 | 5.436175 | ACATGGTGGAAATGATCGATGTAA | 58.564 | 37.500 | 0.54 | 0.00 | 0.00 | 2.41 |
7181 | 16853 | 3.889815 | ACATGGTGGAAATGATCGATGT | 58.110 | 40.909 | 0.54 | 0.00 | 0.00 | 3.06 |
7195 | 16867 | 4.220693 | TCATCAAGGTCCTTACATGGTG | 57.779 | 45.455 | 17.26 | 8.50 | 0.00 | 4.17 |
7206 | 16878 | 5.221126 | GGGATTGCTAATGTTCATCAAGGTC | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
7318 | 16992 | 4.989044 | AGTAAAACGTGTTTGGTCTTTGG | 58.011 | 39.130 | 0.00 | 0.00 | 32.36 | 3.28 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.