Multiple sequence alignment - TraesCS2B01G487900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G487900 chr2B 100.000 3420 0 0 1 3420 685145969 685149388 0.000000e+00 6316.0
1 TraesCS2B01G487900 chr2B 94.795 365 18 1 2559 2923 685153514 685153877 4.950000e-158 568.0
2 TraesCS2B01G487900 chr2B 76.061 330 61 12 1048 1368 797552822 797553142 4.570000e-34 156.0
3 TraesCS2B01G487900 chr2D 90.098 1939 70 30 701 2557 571945691 571947589 0.000000e+00 2405.0
4 TraesCS2B01G487900 chr2D 91.977 860 46 8 2564 3420 633329363 633330202 0.000000e+00 1184.0
5 TraesCS2B01G487900 chr2D 81.078 835 131 25 2604 3420 535215648 535214823 2.880000e-180 641.0
6 TraesCS2B01G487900 chr2D 92.857 364 24 2 2564 2925 633334381 633334744 8.410000e-146 527.0
7 TraesCS2B01G487900 chr2D 94.872 117 5 1 263 379 571942876 571942991 7.540000e-42 182.0
8 TraesCS2B01G487900 chr2A 91.845 1312 46 19 1233 2523 710608598 710609869 0.000000e+00 1773.0
9 TraesCS2B01G487900 chr2A 96.517 804 25 2 1642 2443 710457763 710458565 0.000000e+00 1327.0
10 TraesCS2B01G487900 chr2A 89.902 921 41 10 701 1576 710456857 710457770 0.000000e+00 1138.0
11 TraesCS2B01G487900 chr2A 93.061 245 16 1 991 1235 710603290 710603533 1.170000e-94 357.0
12 TraesCS2B01G487900 chr2A 94.872 117 5 1 263 379 710454185 710454300 7.540000e-42 182.0
13 TraesCS2B01G487900 chr5B 91.590 868 58 6 2558 3420 506324512 506325369 0.000000e+00 1184.0
14 TraesCS2B01G487900 chr5B 89.757 371 33 5 2559 2925 506329507 506329876 1.440000e-128 470.0
15 TraesCS2B01G487900 chr4D 87.126 870 100 8 2559 3420 204758653 204759518 0.000000e+00 976.0
16 TraesCS2B01G487900 chr4D 83.562 365 53 6 2564 2925 204763695 204764055 5.470000e-88 335.0
17 TraesCS2B01G487900 chr7B 85.383 862 116 9 2564 3420 159540272 159539416 0.000000e+00 885.0
18 TraesCS2B01G487900 chr7B 81.081 111 17 2 69 175 234392305 234392415 6.080000e-13 86.1
19 TraesCS2B01G487900 chrUn 80.411 827 144 17 2604 3419 290956833 290956014 6.270000e-172 614.0
20 TraesCS2B01G487900 chrUn 80.411 827 144 17 2604 3419 336406536 336407355 6.270000e-172 614.0
21 TraesCS2B01G487900 chrUn 82.575 637 102 9 2790 3420 313697523 313698156 1.390000e-153 553.0
22 TraesCS2B01G487900 chrUn 82.418 637 103 9 2790 3420 63344548 63345181 6.450000e-152 547.0
23 TraesCS2B01G487900 chrUn 78.638 323 54 11 1048 1364 15341662 15341975 2.080000e-47 200.0
24 TraesCS2B01G487900 chrUn 78.981 314 51 11 1057 1364 272747995 272747691 2.080000e-47 200.0
25 TraesCS2B01G487900 chrUn 76.061 330 61 12 1048 1368 275012911 275013231 4.570000e-34 156.0
26 TraesCS2B01G487900 chrUn 75.926 324 60 15 1051 1368 315958317 315958006 2.130000e-32 150.0
27 TraesCS2B01G487900 chr6B 78.868 265 44 6 2 261 460923733 460923990 5.870000e-38 169.0
28 TraesCS2B01G487900 chr1B 75.556 270 55 9 1 264 554001728 554001464 4.630000e-24 122.0
29 TraesCS2B01G487900 chr1A 83.607 122 20 0 52 173 39611301 39611180 7.760000e-22 115.0
30 TraesCS2B01G487900 chr3D 83.636 110 15 2 46 152 369458596 369458705 2.170000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G487900 chr2B 685145969 685149388 3419 False 6316.000000 6316 100.000000 1 3420 1 chr2B.!!$F1 3419
1 TraesCS2B01G487900 chr2D 571942876 571947589 4713 False 1293.500000 2405 92.485000 263 2557 2 chr2D.!!$F3 2294
2 TraesCS2B01G487900 chr2D 633329363 633330202 839 False 1184.000000 1184 91.977000 2564 3420 1 chr2D.!!$F1 856
3 TraesCS2B01G487900 chr2D 535214823 535215648 825 True 641.000000 641 81.078000 2604 3420 1 chr2D.!!$R1 816
4 TraesCS2B01G487900 chr2A 710608598 710609869 1271 False 1773.000000 1773 91.845000 1233 2523 1 chr2A.!!$F2 1290
5 TraesCS2B01G487900 chr2A 710454185 710458565 4380 False 882.333333 1327 93.763667 263 2443 3 chr2A.!!$F3 2180
6 TraesCS2B01G487900 chr5B 506324512 506325369 857 False 1184.000000 1184 91.590000 2558 3420 1 chr5B.!!$F1 862
7 TraesCS2B01G487900 chr4D 204758653 204759518 865 False 976.000000 976 87.126000 2559 3420 1 chr4D.!!$F1 861
8 TraesCS2B01G487900 chr7B 159539416 159540272 856 True 885.000000 885 85.383000 2564 3420 1 chr7B.!!$R1 856
9 TraesCS2B01G487900 chrUn 290956014 290956833 819 True 614.000000 614 80.411000 2604 3419 1 chrUn.!!$R2 815
10 TraesCS2B01G487900 chrUn 336406536 336407355 819 False 614.000000 614 80.411000 2604 3419 1 chrUn.!!$F5 815
11 TraesCS2B01G487900 chrUn 313697523 313698156 633 False 553.000000 553 82.575000 2790 3420 1 chrUn.!!$F4 630
12 TraesCS2B01G487900 chrUn 63344548 63345181 633 False 547.000000 547 82.418000 2790 3420 1 chrUn.!!$F2 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 3226 0.029567 CTCCACGACGCAGAGATACC 59.970 60.0 8.63 0.00 0.00 2.73 F
721 5254 1.238439 CCAAGAAACGCAGACATGGT 58.762 50.0 0.00 0.00 0.00 3.55 F
1608 6207 0.036294 ACCCGGTTTAAGCTGAGCTC 60.036 55.0 7.72 6.82 38.25 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 6201 0.037046 TCGCAATTGCAGAGAGCTCA 60.037 50.0 28.77 0.0 45.94 4.26 R
1849 6474 0.042281 GGTGGTAGTACCCCTCCAGT 59.958 60.0 16.91 0.0 37.50 4.00 R
2496 7136 0.043940 AACATCAGGAGAGGGAGGCT 59.956 55.0 0.00 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.215845 ACATCACTAATGTTGCAAAACTTCC 58.784 36.000 0.00 0.00 46.73 3.46
30 31 6.040842 ACATCACTAATGTTGCAAAACTTCCT 59.959 34.615 0.00 0.00 46.73 3.36
31 32 6.463995 TCACTAATGTTGCAAAACTTCCTT 57.536 33.333 0.00 0.00 0.00 3.36
32 33 6.503524 TCACTAATGTTGCAAAACTTCCTTC 58.496 36.000 0.00 0.00 0.00 3.46
33 34 5.691754 CACTAATGTTGCAAAACTTCCTTCC 59.308 40.000 0.00 0.00 0.00 3.46
34 35 4.751767 AATGTTGCAAAACTTCCTTCCA 57.248 36.364 0.00 0.00 0.00 3.53
35 36 3.518634 TGTTGCAAAACTTCCTTCCAC 57.481 42.857 0.00 0.00 0.00 4.02
36 37 2.828520 TGTTGCAAAACTTCCTTCCACA 59.171 40.909 0.00 0.00 0.00 4.17
37 38 3.259374 TGTTGCAAAACTTCCTTCCACAA 59.741 39.130 0.00 0.00 0.00 3.33
38 39 3.799281 TGCAAAACTTCCTTCCACAAG 57.201 42.857 0.00 0.00 0.00 3.16
39 40 3.096092 TGCAAAACTTCCTTCCACAAGT 58.904 40.909 0.00 0.00 34.16 3.16
40 41 3.513515 TGCAAAACTTCCTTCCACAAGTT 59.486 39.130 0.00 0.00 43.28 2.66
41 42 4.707448 TGCAAAACTTCCTTCCACAAGTTA 59.293 37.500 0.00 0.00 41.09 2.24
42 43 5.362430 TGCAAAACTTCCTTCCACAAGTTAT 59.638 36.000 0.00 0.00 41.09 1.89
43 44 5.691754 GCAAAACTTCCTTCCACAAGTTATG 59.308 40.000 0.00 0.00 41.09 1.90
44 45 5.453567 AAACTTCCTTCCACAAGTTATGC 57.546 39.130 0.00 0.00 41.09 3.14
45 46 4.098914 ACTTCCTTCCACAAGTTATGCA 57.901 40.909 0.00 0.00 27.81 3.96
46 47 4.469657 ACTTCCTTCCACAAGTTATGCAA 58.530 39.130 0.00 0.00 27.81 4.08
47 48 4.278419 ACTTCCTTCCACAAGTTATGCAAC 59.722 41.667 0.00 0.00 34.67 4.17
48 49 3.826524 TCCTTCCACAAGTTATGCAACA 58.173 40.909 0.00 0.00 37.10 3.33
49 50 4.211125 TCCTTCCACAAGTTATGCAACAA 58.789 39.130 0.00 0.00 37.10 2.83
50 51 4.832266 TCCTTCCACAAGTTATGCAACAAT 59.168 37.500 0.00 0.00 37.10 2.71
51 52 6.007076 TCCTTCCACAAGTTATGCAACAATA 58.993 36.000 0.00 0.00 37.10 1.90
52 53 6.663093 TCCTTCCACAAGTTATGCAACAATAT 59.337 34.615 0.00 0.00 37.10 1.28
53 54 6.974622 CCTTCCACAAGTTATGCAACAATATC 59.025 38.462 0.00 0.00 37.10 1.63
54 55 7.148018 CCTTCCACAAGTTATGCAACAATATCT 60.148 37.037 0.00 0.00 37.10 1.98
55 56 7.087409 TCCACAAGTTATGCAACAATATCTG 57.913 36.000 0.00 0.00 37.10 2.90
56 57 5.745294 CCACAAGTTATGCAACAATATCTGC 59.255 40.000 0.00 0.00 37.10 4.26
64 65 4.496360 TGCAACAATATCTGCAACATTGG 58.504 39.130 15.23 4.17 45.25 3.16
65 66 4.021280 TGCAACAATATCTGCAACATTGGT 60.021 37.500 15.23 8.69 45.25 3.67
66 67 4.931002 GCAACAATATCTGCAACATTGGTT 59.069 37.500 15.23 3.08 38.48 3.67
67 68 5.409214 GCAACAATATCTGCAACATTGGTTT 59.591 36.000 15.23 3.50 38.48 3.27
68 69 6.073112 GCAACAATATCTGCAACATTGGTTTT 60.073 34.615 15.23 2.99 38.48 2.43
69 70 7.292292 CAACAATATCTGCAACATTGGTTTTG 58.708 34.615 15.23 9.23 34.21 2.44
70 71 6.523840 ACAATATCTGCAACATTGGTTTTGT 58.476 32.000 15.23 3.76 34.21 2.83
71 72 6.991531 ACAATATCTGCAACATTGGTTTTGTT 59.008 30.769 15.23 0.00 37.79 2.83
107 108 7.935338 CAACAATATCTCTGTTGCAAAAGTT 57.065 32.000 16.28 5.75 45.07 2.66
108 109 8.000285 CAACAATATCTCTGTTGCAAAAGTTC 58.000 34.615 16.28 0.00 45.07 3.01
109 110 7.516198 ACAATATCTCTGTTGCAAAAGTTCT 57.484 32.000 16.28 4.93 0.00 3.01
110 111 7.365741 ACAATATCTCTGTTGCAAAAGTTCTG 58.634 34.615 16.28 8.81 0.00 3.02
111 112 3.698029 TCTCTGTTGCAAAAGTTCTGC 57.302 42.857 16.28 0.00 40.35 4.26
118 119 3.797451 TGCAAAAGTTCTGCAACATGA 57.203 38.095 0.17 0.00 46.47 3.07
119 120 4.120792 TGCAAAAGTTCTGCAACATGAA 57.879 36.364 0.17 0.00 46.47 2.57
120 121 3.864583 TGCAAAAGTTCTGCAACATGAAC 59.135 39.130 0.17 8.16 46.47 3.18
143 144 1.634702 GTTGCAAACCTTTCAACGCA 58.365 45.000 0.00 0.00 42.21 5.24
144 145 1.996191 GTTGCAAACCTTTCAACGCAA 59.004 42.857 0.00 0.00 42.21 4.85
145 146 1.634702 TGCAAACCTTTCAACGCAAC 58.365 45.000 0.00 0.00 0.00 4.17
146 147 1.067565 TGCAAACCTTTCAACGCAACA 60.068 42.857 0.00 0.00 0.00 3.33
147 148 2.200899 GCAAACCTTTCAACGCAACAT 58.799 42.857 0.00 0.00 0.00 2.71
148 149 2.218530 GCAAACCTTTCAACGCAACATC 59.781 45.455 0.00 0.00 0.00 3.06
149 150 3.443037 CAAACCTTTCAACGCAACATCA 58.557 40.909 0.00 0.00 0.00 3.07
150 151 4.050553 CAAACCTTTCAACGCAACATCAT 58.949 39.130 0.00 0.00 0.00 2.45
151 152 3.559238 ACCTTTCAACGCAACATCATC 57.441 42.857 0.00 0.00 0.00 2.92
152 153 2.228822 ACCTTTCAACGCAACATCATCC 59.771 45.455 0.00 0.00 0.00 3.51
153 154 2.489329 CCTTTCAACGCAACATCATCCT 59.511 45.455 0.00 0.00 0.00 3.24
154 155 3.689161 CCTTTCAACGCAACATCATCCTA 59.311 43.478 0.00 0.00 0.00 2.94
155 156 4.201851 CCTTTCAACGCAACATCATCCTAG 60.202 45.833 0.00 0.00 0.00 3.02
156 157 3.610040 TCAACGCAACATCATCCTAGT 57.390 42.857 0.00 0.00 0.00 2.57
157 158 3.937814 TCAACGCAACATCATCCTAGTT 58.062 40.909 0.00 0.00 0.00 2.24
158 159 3.684305 TCAACGCAACATCATCCTAGTTG 59.316 43.478 0.00 0.00 44.01 3.16
163 164 4.944962 CAACATCATCCTAGTTGCGAAA 57.055 40.909 0.00 0.00 36.59 3.46
164 165 4.651994 CAACATCATCCTAGTTGCGAAAC 58.348 43.478 0.00 0.00 36.59 2.78
165 166 4.207891 ACATCATCCTAGTTGCGAAACT 57.792 40.909 14.58 14.58 36.82 2.66
166 167 3.935203 ACATCATCCTAGTTGCGAAACTG 59.065 43.478 19.55 8.69 34.37 3.16
167 168 3.953712 TCATCCTAGTTGCGAAACTGA 57.046 42.857 19.55 8.90 34.37 3.41
168 169 4.471904 TCATCCTAGTTGCGAAACTGAT 57.528 40.909 19.55 10.91 34.37 2.90
169 170 5.592104 TCATCCTAGTTGCGAAACTGATA 57.408 39.130 19.55 3.96 34.37 2.15
170 171 5.592054 TCATCCTAGTTGCGAAACTGATAG 58.408 41.667 19.55 8.27 34.37 2.08
171 172 3.782046 TCCTAGTTGCGAAACTGATAGC 58.218 45.455 19.55 0.00 34.37 2.97
172 173 3.447586 TCCTAGTTGCGAAACTGATAGCT 59.552 43.478 19.55 0.00 34.37 3.32
173 174 4.643334 TCCTAGTTGCGAAACTGATAGCTA 59.357 41.667 19.55 0.00 34.37 3.32
174 175 5.126545 TCCTAGTTGCGAAACTGATAGCTAA 59.873 40.000 19.55 0.00 34.37 3.09
175 176 5.460419 CCTAGTTGCGAAACTGATAGCTAAG 59.540 44.000 19.55 5.29 34.37 2.18
176 177 4.822026 AGTTGCGAAACTGATAGCTAAGT 58.178 39.130 8.35 0.00 0.00 2.24
177 178 4.865365 AGTTGCGAAACTGATAGCTAAGTC 59.135 41.667 8.35 0.00 0.00 3.01
178 179 3.435566 TGCGAAACTGATAGCTAAGTCG 58.564 45.455 0.00 0.08 0.00 4.18
179 180 2.216714 GCGAAACTGATAGCTAAGTCGC 59.783 50.000 12.91 12.91 34.10 5.19
180 181 3.435566 CGAAACTGATAGCTAAGTCGCA 58.564 45.455 0.00 0.00 0.00 5.10
181 182 3.240861 CGAAACTGATAGCTAAGTCGCAC 59.759 47.826 0.00 0.00 0.00 5.34
182 183 2.476873 ACTGATAGCTAAGTCGCACG 57.523 50.000 0.00 0.00 0.00 5.34
183 184 1.065701 ACTGATAGCTAAGTCGCACGG 59.934 52.381 0.00 0.00 0.00 4.94
184 185 1.065701 CTGATAGCTAAGTCGCACGGT 59.934 52.381 0.00 0.00 0.00 4.83
185 186 2.289820 CTGATAGCTAAGTCGCACGGTA 59.710 50.000 0.00 0.00 0.00 4.02
186 187 2.882761 TGATAGCTAAGTCGCACGGTAT 59.117 45.455 0.00 0.00 0.00 2.73
187 188 3.058432 TGATAGCTAAGTCGCACGGTATC 60.058 47.826 0.00 0.00 37.37 2.24
188 189 0.384669 AGCTAAGTCGCACGGTATCC 59.615 55.000 0.00 0.00 0.00 2.59
189 190 0.596859 GCTAAGTCGCACGGTATCCC 60.597 60.000 0.00 0.00 0.00 3.85
201 202 2.243602 GGTATCCCGCGTTAAATCCA 57.756 50.000 4.92 0.00 0.00 3.41
202 203 2.140717 GGTATCCCGCGTTAAATCCAG 58.859 52.381 4.92 0.00 0.00 3.86
203 204 2.224113 GGTATCCCGCGTTAAATCCAGA 60.224 50.000 4.92 0.00 0.00 3.86
204 205 2.240493 ATCCCGCGTTAAATCCAGAG 57.760 50.000 4.92 0.00 0.00 3.35
205 206 0.177141 TCCCGCGTTAAATCCAGAGG 59.823 55.000 4.92 0.00 0.00 3.69
206 207 1.436983 CCCGCGTTAAATCCAGAGGC 61.437 60.000 4.92 0.00 0.00 4.70
207 208 0.462047 CCGCGTTAAATCCAGAGGCT 60.462 55.000 4.92 0.00 0.00 4.58
208 209 1.202486 CCGCGTTAAATCCAGAGGCTA 60.202 52.381 4.92 0.00 0.00 3.93
209 210 2.128035 CGCGTTAAATCCAGAGGCTAG 58.872 52.381 0.00 0.00 0.00 3.42
210 211 1.867865 GCGTTAAATCCAGAGGCTAGC 59.132 52.381 6.04 6.04 0.00 3.42
211 212 2.741878 GCGTTAAATCCAGAGGCTAGCA 60.742 50.000 18.24 0.00 0.00 3.49
212 213 3.531538 CGTTAAATCCAGAGGCTAGCAA 58.468 45.455 18.24 0.00 0.00 3.91
213 214 3.557595 CGTTAAATCCAGAGGCTAGCAAG 59.442 47.826 18.24 2.48 0.00 4.01
214 215 4.680708 CGTTAAATCCAGAGGCTAGCAAGA 60.681 45.833 18.24 5.48 0.00 3.02
215 216 2.998316 AATCCAGAGGCTAGCAAGAC 57.002 50.000 18.24 4.39 0.00 3.01
216 217 1.871418 ATCCAGAGGCTAGCAAGACA 58.129 50.000 18.24 0.00 30.50 3.41
217 218 1.644509 TCCAGAGGCTAGCAAGACAA 58.355 50.000 18.24 0.00 30.50 3.18
218 219 1.276421 TCCAGAGGCTAGCAAGACAAC 59.724 52.381 18.24 0.00 30.50 3.32
219 220 1.354040 CAGAGGCTAGCAAGACAACG 58.646 55.000 18.24 0.00 30.50 4.10
220 221 0.247736 AGAGGCTAGCAAGACAACGG 59.752 55.000 18.24 0.00 30.50 4.44
221 222 0.037232 GAGGCTAGCAAGACAACGGT 60.037 55.000 18.24 0.00 30.50 4.83
222 223 0.396811 AGGCTAGCAAGACAACGGTT 59.603 50.000 18.24 0.00 30.50 4.44
223 224 0.796927 GGCTAGCAAGACAACGGTTC 59.203 55.000 18.24 0.00 0.00 3.62
224 225 1.608283 GGCTAGCAAGACAACGGTTCT 60.608 52.381 18.24 0.00 0.00 3.01
225 226 2.143925 GCTAGCAAGACAACGGTTCTT 58.856 47.619 10.63 0.00 0.00 2.52
226 227 2.548480 GCTAGCAAGACAACGGTTCTTT 59.452 45.455 10.63 0.00 0.00 2.52
227 228 3.003378 GCTAGCAAGACAACGGTTCTTTT 59.997 43.478 10.63 0.00 0.00 2.27
228 229 4.212636 GCTAGCAAGACAACGGTTCTTTTA 59.787 41.667 10.63 0.00 0.00 1.52
229 230 5.277634 GCTAGCAAGACAACGGTTCTTTTAA 60.278 40.000 10.63 0.00 0.00 1.52
230 231 5.169836 AGCAAGACAACGGTTCTTTTAAG 57.830 39.130 0.00 0.00 0.00 1.85
231 232 4.879545 AGCAAGACAACGGTTCTTTTAAGA 59.120 37.500 0.00 0.00 0.00 2.10
232 233 5.355910 AGCAAGACAACGGTTCTTTTAAGAA 59.644 36.000 0.89 0.89 42.41 2.52
233 234 6.039382 AGCAAGACAACGGTTCTTTTAAGAAT 59.961 34.615 8.07 0.00 45.83 2.40
234 235 7.227910 AGCAAGACAACGGTTCTTTTAAGAATA 59.772 33.333 8.07 0.00 45.83 1.75
235 236 8.021396 GCAAGACAACGGTTCTTTTAAGAATAT 58.979 33.333 8.07 0.00 45.83 1.28
236 237 9.893305 CAAGACAACGGTTCTTTTAAGAATATT 57.107 29.630 8.07 0.00 45.83 1.28
238 239 8.440833 AGACAACGGTTCTTTTAAGAATATTCG 58.559 33.333 9.78 11.33 45.83 3.34
239 240 8.091385 ACAACGGTTCTTTTAAGAATATTCGT 57.909 30.769 9.78 9.34 45.83 3.85
240 241 8.225777 ACAACGGTTCTTTTAAGAATATTCGTC 58.774 33.333 7.19 0.00 45.83 4.20
241 242 6.986118 ACGGTTCTTTTAAGAATATTCGTCG 58.014 36.000 7.19 5.45 45.83 5.12
242 243 6.035327 ACGGTTCTTTTAAGAATATTCGTCGG 59.965 38.462 7.19 0.00 45.83 4.79
243 244 6.190264 GGTTCTTTTAAGAATATTCGTCGGC 58.810 40.000 7.19 0.00 45.83 5.54
244 245 5.978934 TCTTTTAAGAATATTCGTCGGCC 57.021 39.130 7.19 0.00 30.73 6.13
245 246 4.505191 TCTTTTAAGAATATTCGTCGGCCG 59.495 41.667 22.12 22.12 32.52 6.13
246 247 3.713858 TTAAGAATATTCGTCGGCCGA 57.286 42.857 27.28 27.28 45.66 5.54
247 248 7.654669 TCTTTTAAGAATATTCGTCGGCCGAC 61.655 42.308 41.75 41.75 37.43 4.79
248 249 9.907875 TCTTTTAAGAATATTCGTCGGCCGACA 62.908 40.741 46.26 33.93 37.43 4.35
253 254 3.792047 TCGTCGGCCGACACGTAG 61.792 66.667 46.26 33.45 44.77 3.51
254 255 4.093952 CGTCGGCCGACACGTAGT 62.094 66.667 46.26 0.00 44.77 2.73
310 311 8.225777 GTCTCCAAACTTGTTAAATTACTACCG 58.774 37.037 0.00 0.00 0.00 4.02
384 385 6.676237 TGCTCATGCATTTAACTTCGATAA 57.324 33.333 0.00 0.00 45.31 1.75
385 386 7.263100 TGCTCATGCATTTAACTTCGATAAT 57.737 32.000 0.00 0.00 45.31 1.28
386 387 8.376889 TGCTCATGCATTTAACTTCGATAATA 57.623 30.769 0.00 0.00 45.31 0.98
387 388 8.282592 TGCTCATGCATTTAACTTCGATAATAC 58.717 33.333 0.00 0.00 45.31 1.89
388 389 8.499162 GCTCATGCATTTAACTTCGATAATACT 58.501 33.333 0.00 0.00 39.41 2.12
400 401 8.599055 ACTTCGATAATACTACATCTACGTCA 57.401 34.615 0.00 0.00 0.00 4.35
401 402 9.049523 ACTTCGATAATACTACATCTACGTCAA 57.950 33.333 0.00 0.00 0.00 3.18
402 403 9.531412 CTTCGATAATACTACATCTACGTCAAG 57.469 37.037 0.00 0.00 0.00 3.02
403 404 7.516481 TCGATAATACTACATCTACGTCAAGC 58.484 38.462 0.00 0.00 0.00 4.01
404 405 7.387122 TCGATAATACTACATCTACGTCAAGCT 59.613 37.037 0.00 0.00 0.00 3.74
405 406 8.654215 CGATAATACTACATCTACGTCAAGCTA 58.346 37.037 0.00 0.00 0.00 3.32
406 407 9.757859 GATAATACTACATCTACGTCAAGCTAC 57.242 37.037 0.00 0.00 0.00 3.58
408 409 4.186926 ACTACATCTACGTCAAGCTACGA 58.813 43.478 15.63 0.00 45.68 3.43
409 410 4.633126 ACTACATCTACGTCAAGCTACGAA 59.367 41.667 15.63 1.71 45.68 3.85
410 411 4.017380 ACATCTACGTCAAGCTACGAAG 57.983 45.455 15.63 6.73 45.68 3.79
411 412 3.688185 ACATCTACGTCAAGCTACGAAGA 59.312 43.478 15.63 2.74 45.68 2.87
412 413 4.201832 ACATCTACGTCAAGCTACGAAGAG 60.202 45.833 15.63 9.30 45.68 2.85
413 414 3.332919 TCTACGTCAAGCTACGAAGAGT 58.667 45.455 15.63 5.87 45.68 3.24
414 415 3.750130 TCTACGTCAAGCTACGAAGAGTT 59.250 43.478 15.63 0.00 45.68 3.01
415 416 3.366440 ACGTCAAGCTACGAAGAGTTT 57.634 42.857 15.63 0.00 45.68 2.66
416 417 3.714391 ACGTCAAGCTACGAAGAGTTTT 58.286 40.909 15.63 0.00 45.68 2.43
417 418 4.863491 ACGTCAAGCTACGAAGAGTTTTA 58.137 39.130 15.63 0.00 45.68 1.52
418 419 4.916249 ACGTCAAGCTACGAAGAGTTTTAG 59.084 41.667 15.63 0.00 45.68 1.85
419 420 4.323868 CGTCAAGCTACGAAGAGTTTTAGG 59.676 45.833 2.81 0.00 45.68 2.69
420 421 5.228665 GTCAAGCTACGAAGAGTTTTAGGT 58.771 41.667 0.00 0.00 0.00 3.08
421 422 6.385033 GTCAAGCTACGAAGAGTTTTAGGTA 58.615 40.000 0.00 0.00 0.00 3.08
422 423 6.865205 GTCAAGCTACGAAGAGTTTTAGGTAA 59.135 38.462 0.00 0.00 0.00 2.85
423 424 7.383300 GTCAAGCTACGAAGAGTTTTAGGTAAA 59.617 37.037 0.00 0.00 0.00 2.01
424 425 7.383300 TCAAGCTACGAAGAGTTTTAGGTAAAC 59.617 37.037 0.00 0.00 45.26 2.01
443 444 8.095169 AGGTAAACTGCCTATTAATTATCTCGG 58.905 37.037 0.00 0.00 33.97 4.63
444 445 6.803154 AAACTGCCTATTAATTATCTCGGC 57.197 37.500 0.00 8.03 36.64 5.54
445 446 5.746990 ACTGCCTATTAATTATCTCGGCT 57.253 39.130 13.36 0.00 37.01 5.52
446 447 5.725362 ACTGCCTATTAATTATCTCGGCTC 58.275 41.667 13.36 0.00 37.01 4.70
447 448 5.086104 TGCCTATTAATTATCTCGGCTCC 57.914 43.478 13.36 0.00 37.01 4.70
448 449 4.777896 TGCCTATTAATTATCTCGGCTCCT 59.222 41.667 13.36 0.00 37.01 3.69
449 450 5.105310 TGCCTATTAATTATCTCGGCTCCTC 60.105 44.000 13.36 0.00 37.01 3.71
450 451 5.682730 GCCTATTAATTATCTCGGCTCCTCC 60.683 48.000 0.00 0.00 33.47 4.30
451 452 5.659079 CCTATTAATTATCTCGGCTCCTCCT 59.341 44.000 0.00 0.00 0.00 3.69
452 453 4.873746 TTAATTATCTCGGCTCCTCCTG 57.126 45.455 0.00 0.00 0.00 3.86
453 454 2.685106 ATTATCTCGGCTCCTCCTGA 57.315 50.000 0.00 0.00 0.00 3.86
454 455 2.685106 TTATCTCGGCTCCTCCTGAT 57.315 50.000 0.00 0.00 32.87 2.90
455 456 2.685106 TATCTCGGCTCCTCCTGATT 57.315 50.000 0.00 0.00 31.43 2.57
456 457 1.799933 ATCTCGGCTCCTCCTGATTT 58.200 50.000 0.00 0.00 0.00 2.17
457 458 1.573108 TCTCGGCTCCTCCTGATTTT 58.427 50.000 0.00 0.00 0.00 1.82
458 459 1.482593 TCTCGGCTCCTCCTGATTTTC 59.517 52.381 0.00 0.00 0.00 2.29
459 460 1.208052 CTCGGCTCCTCCTGATTTTCA 59.792 52.381 0.00 0.00 0.00 2.69
460 461 1.208052 TCGGCTCCTCCTGATTTTCAG 59.792 52.381 0.00 0.00 43.91 3.02
469 470 2.584835 CTGATTTTCAGGTGGGTGGA 57.415 50.000 0.00 0.00 40.71 4.02
470 471 2.440409 CTGATTTTCAGGTGGGTGGAG 58.560 52.381 0.00 0.00 40.71 3.86
471 472 1.177401 GATTTTCAGGTGGGTGGAGC 58.823 55.000 0.00 0.00 0.00 4.70
472 473 0.251787 ATTTTCAGGTGGGTGGAGCC 60.252 55.000 0.00 0.00 0.00 4.70
486 487 4.635963 AGCCCCTTCCACCCCCTT 62.636 66.667 0.00 0.00 0.00 3.95
487 488 4.062032 GCCCCTTCCACCCCCTTC 62.062 72.222 0.00 0.00 0.00 3.46
488 489 2.204306 CCCCTTCCACCCCCTTCT 60.204 66.667 0.00 0.00 0.00 2.85
489 490 2.309504 CCCCTTCCACCCCCTTCTC 61.310 68.421 0.00 0.00 0.00 2.87
490 491 2.309504 CCCTTCCACCCCCTTCTCC 61.310 68.421 0.00 0.00 0.00 3.71
491 492 1.541368 CCTTCCACCCCCTTCTCCA 60.541 63.158 0.00 0.00 0.00 3.86
492 493 1.140134 CCTTCCACCCCCTTCTCCAA 61.140 60.000 0.00 0.00 0.00 3.53
493 494 1.002857 CTTCCACCCCCTTCTCCAAT 58.997 55.000 0.00 0.00 0.00 3.16
494 495 0.999712 TTCCACCCCCTTCTCCAATC 59.000 55.000 0.00 0.00 0.00 2.67
495 496 0.919289 TCCACCCCCTTCTCCAATCC 60.919 60.000 0.00 0.00 0.00 3.01
496 497 1.214305 CCACCCCCTTCTCCAATCCA 61.214 60.000 0.00 0.00 0.00 3.41
497 498 0.704076 CACCCCCTTCTCCAATCCAA 59.296 55.000 0.00 0.00 0.00 3.53
498 499 1.077005 CACCCCCTTCTCCAATCCAAA 59.923 52.381 0.00 0.00 0.00 3.28
499 500 2.010699 ACCCCCTTCTCCAATCCAAAT 58.989 47.619 0.00 0.00 0.00 2.32
500 501 2.386811 ACCCCCTTCTCCAATCCAAATT 59.613 45.455 0.00 0.00 0.00 1.82
501 502 3.600617 ACCCCCTTCTCCAATCCAAATTA 59.399 43.478 0.00 0.00 0.00 1.40
502 503 4.218312 CCCCCTTCTCCAATCCAAATTAG 58.782 47.826 0.00 0.00 0.00 1.73
503 504 3.638627 CCCCTTCTCCAATCCAAATTAGC 59.361 47.826 0.00 0.00 0.00 3.09
504 505 3.638627 CCCTTCTCCAATCCAAATTAGCC 59.361 47.826 0.00 0.00 0.00 3.93
505 506 4.280819 CCTTCTCCAATCCAAATTAGCCA 58.719 43.478 0.00 0.00 0.00 4.75
506 507 4.897670 CCTTCTCCAATCCAAATTAGCCAT 59.102 41.667 0.00 0.00 0.00 4.40
507 508 5.221382 CCTTCTCCAATCCAAATTAGCCATG 60.221 44.000 0.00 0.00 0.00 3.66
508 509 4.870636 TCTCCAATCCAAATTAGCCATGT 58.129 39.130 0.00 0.00 0.00 3.21
509 510 5.271598 TCTCCAATCCAAATTAGCCATGTT 58.728 37.500 0.00 0.00 0.00 2.71
510 511 5.127519 TCTCCAATCCAAATTAGCCATGTTG 59.872 40.000 0.00 0.00 0.00 3.33
511 512 3.872771 CCAATCCAAATTAGCCATGTTGC 59.127 43.478 0.00 0.00 0.00 4.17
512 513 4.383335 CCAATCCAAATTAGCCATGTTGCT 60.383 41.667 1.96 1.96 45.38 3.91
513 514 4.660789 ATCCAAATTAGCCATGTTGCTC 57.339 40.909 0.00 0.00 41.68 4.26
514 515 3.700538 TCCAAATTAGCCATGTTGCTCT 58.299 40.909 0.00 0.00 41.68 4.09
515 516 4.088634 TCCAAATTAGCCATGTTGCTCTT 58.911 39.130 0.00 0.00 41.68 2.85
516 517 4.527816 TCCAAATTAGCCATGTTGCTCTTT 59.472 37.500 0.00 0.45 41.68 2.52
517 518 5.714333 TCCAAATTAGCCATGTTGCTCTTTA 59.286 36.000 0.00 0.00 41.68 1.85
518 519 5.807011 CCAAATTAGCCATGTTGCTCTTTAC 59.193 40.000 0.00 0.00 41.68 2.01
519 520 6.350445 CCAAATTAGCCATGTTGCTCTTTACT 60.350 38.462 0.00 0.00 41.68 2.24
520 521 6.840780 AATTAGCCATGTTGCTCTTTACTT 57.159 33.333 0.00 0.00 41.68 2.24
521 522 7.938140 AATTAGCCATGTTGCTCTTTACTTA 57.062 32.000 0.00 0.00 41.68 2.24
522 523 7.938140 ATTAGCCATGTTGCTCTTTACTTAA 57.062 32.000 0.00 0.00 41.68 1.85
523 524 7.753309 TTAGCCATGTTGCTCTTTACTTAAA 57.247 32.000 0.00 0.00 41.68 1.52
524 525 6.648879 AGCCATGTTGCTCTTTACTTAAAA 57.351 33.333 0.00 0.00 36.75 1.52
525 526 6.681777 AGCCATGTTGCTCTTTACTTAAAAG 58.318 36.000 0.00 0.00 45.13 2.27
526 527 6.265422 AGCCATGTTGCTCTTTACTTAAAAGT 59.735 34.615 0.39 0.39 44.27 2.66
527 528 7.447238 AGCCATGTTGCTCTTTACTTAAAAGTA 59.553 33.333 0.00 0.00 44.27 2.24
528 529 7.537649 GCCATGTTGCTCTTTACTTAAAAGTAC 59.462 37.037 2.06 0.00 44.27 2.73
529 530 8.564574 CCATGTTGCTCTTTACTTAAAAGTACA 58.435 33.333 2.06 0.00 44.27 2.90
571 572 8.934507 AGTCTAGCATTACTGTAGATGAAAAC 57.065 34.615 11.56 6.05 0.00 2.43
575 576 9.760660 CTAGCATTACTGTAGATGAAAACAAAC 57.239 33.333 11.56 0.00 0.00 2.93
576 577 8.165239 AGCATTACTGTAGATGAAAACAAACA 57.835 30.769 11.56 0.00 0.00 2.83
577 578 8.076178 AGCATTACTGTAGATGAAAACAAACAC 58.924 33.333 11.56 0.00 0.00 3.32
580 581 6.044512 ACTGTAGATGAAAACAAACACGAC 57.955 37.500 0.00 0.00 0.00 4.34
581 582 5.007332 ACTGTAGATGAAAACAAACACGACC 59.993 40.000 0.00 0.00 0.00 4.79
637 3165 9.239551 CCTGATCCAAATAATACATCACATCAT 57.760 33.333 0.00 0.00 0.00 2.45
678 3226 0.029567 CTCCACGACGCAGAGATACC 59.970 60.000 8.63 0.00 0.00 2.73
687 3235 1.271934 CGCAGAGATACCTGGGATCAG 59.728 57.143 20.86 10.99 46.26 2.90
689 3237 2.298729 GCAGAGATACCTGGGATCAGAC 59.701 54.545 20.86 11.29 43.49 3.51
694 3242 5.087323 GAGATACCTGGGATCAGACCAATA 58.913 45.833 20.86 0.00 43.49 1.90
695 3243 5.476983 AGATACCTGGGATCAGACCAATAA 58.523 41.667 20.86 0.00 43.49 1.40
696 3244 5.911178 AGATACCTGGGATCAGACCAATAAA 59.089 40.000 20.86 0.00 43.49 1.40
698 3246 3.206150 CCTGGGATCAGACCAATAAACG 58.794 50.000 0.00 0.00 43.49 3.60
721 5254 1.238439 CCAAGAAACGCAGACATGGT 58.762 50.000 0.00 0.00 0.00 3.55
729 5262 3.499737 CAGACATGGTTCGCCGGC 61.500 66.667 19.07 19.07 41.18 6.13
730 5263 4.778143 AGACATGGTTCGCCGGCC 62.778 66.667 23.46 7.25 41.18 6.13
836 5382 4.202472 TGGTGTTCTGTCTGTCTCTCTCTA 60.202 45.833 0.00 0.00 0.00 2.43
1043 5625 1.664873 GAGGCTAAATGGGGTCGTTC 58.335 55.000 0.00 0.00 0.00 3.95
1076 5658 2.656069 GCCAGGGACGCTGTTCCTA 61.656 63.158 17.35 0.00 40.04 2.94
1078 5660 1.258445 CCAGGGACGCTGTTCCTAGT 61.258 60.000 17.35 0.00 40.04 2.57
1208 5790 2.352032 GGAGCTCTACGTGGTGGCT 61.352 63.158 14.64 17.75 35.86 4.75
1301 5883 1.626686 CGGAGTCCAGCCTCATCTAT 58.373 55.000 10.49 0.00 32.91 1.98
1391 5973 1.961277 CAGGTGTGTTGCCGTCCTC 60.961 63.158 0.00 0.00 0.00 3.71
1398 5980 3.379445 TTGCCGTCCTCCTCCGTC 61.379 66.667 0.00 0.00 0.00 4.79
1436 6030 3.798202 ACTCTGTTCTTGAGTTGGTGTC 58.202 45.455 0.00 0.00 41.45 3.67
1441 6035 6.353323 TCTGTTCTTGAGTTGGTGTCAATTA 58.647 36.000 0.00 0.00 33.49 1.40
1451 6045 7.777440 TGAGTTGGTGTCAATTATAATGCCATA 59.223 33.333 0.00 0.00 35.10 2.74
1468 6062 5.363101 TGCCATACTTCAGATAGCTCAAAG 58.637 41.667 0.00 0.00 0.00 2.77
1495 6091 7.577979 TGGTAGAAATTGTGTGAAATTCGTAC 58.422 34.615 0.00 0.00 0.00 3.67
1507 6103 5.008316 GTGAAATTCGTACCACCAAAAGTCT 59.992 40.000 0.00 0.00 0.00 3.24
1600 6199 4.214758 CCTTCAGTTAACACCCGGTTTAAG 59.785 45.833 8.61 0.00 40.96 1.85
1601 6200 3.140623 TCAGTTAACACCCGGTTTAAGC 58.859 45.455 8.61 0.00 40.96 3.09
1602 6201 3.143728 CAGTTAACACCCGGTTTAAGCT 58.856 45.455 8.61 0.00 40.96 3.74
1603 6202 3.058501 CAGTTAACACCCGGTTTAAGCTG 60.059 47.826 8.61 7.81 40.96 4.24
1604 6203 3.140623 GTTAACACCCGGTTTAAGCTGA 58.859 45.455 0.00 0.00 40.96 4.26
1605 6204 1.892209 AACACCCGGTTTAAGCTGAG 58.108 50.000 0.00 0.00 35.82 3.35
1606 6205 0.605589 ACACCCGGTTTAAGCTGAGC 60.606 55.000 0.00 0.00 0.00 4.26
1607 6206 0.321653 CACCCGGTTTAAGCTGAGCT 60.322 55.000 0.00 0.00 42.56 4.09
1608 6207 0.036294 ACCCGGTTTAAGCTGAGCTC 60.036 55.000 7.72 6.82 38.25 4.09
1609 6208 0.250513 CCCGGTTTAAGCTGAGCTCT 59.749 55.000 16.19 0.51 38.25 4.09
1610 6209 1.646189 CCGGTTTAAGCTGAGCTCTC 58.354 55.000 16.19 6.86 38.25 3.20
1611 6210 1.205893 CCGGTTTAAGCTGAGCTCTCT 59.794 52.381 16.19 9.20 38.25 3.10
1717 6319 9.995003 ACCATCTCAGATAGATTTTACTTGATC 57.005 33.333 0.00 0.00 42.62 2.92
2170 6795 1.746615 CGTGCTTGGGTGCTATGCT 60.747 57.895 0.00 0.00 0.00 3.79
2218 6843 3.592814 CTGGCGGCCATGCATGAG 61.593 66.667 28.31 18.06 36.28 2.90
2226 6851 2.713770 CATGCATGAGGAGCACGC 59.286 61.111 22.59 0.00 45.95 5.34
2392 7032 1.001487 TGCTGTTTCAATTGTGAGCGG 60.001 47.619 5.13 4.42 34.49 5.52
2414 7054 4.508052 GCGTTTGAAATGAAACTTTGCAG 58.492 39.130 0.48 0.00 34.26 4.41
2426 7066 5.750067 TGAAACTTTGCAGATTGAGAAAAGC 59.250 36.000 0.00 0.00 32.33 3.51
2443 7083 7.594758 TGAGAAAAGCTTCAAATGGAAAATACG 59.405 33.333 0.00 0.00 34.44 3.06
2496 7136 4.467438 TGATGCTTCATCCTACAAGTCAGA 59.533 41.667 0.00 0.00 39.87 3.27
2544 7184 6.758886 GCTAGTGCTCTTTTCATGTGTACTAT 59.241 38.462 0.00 0.00 36.03 2.12
2636 7280 2.835701 TAGCAGTTCCGGCAAGCGAG 62.836 60.000 0.00 0.00 0.00 5.03
2644 7328 4.410743 GGCAAGCGAGGCAAGCAC 62.411 66.667 6.95 0.00 37.01 4.40
2645 7329 4.748679 GCAAGCGAGGCAAGCACG 62.749 66.667 6.95 6.54 37.01 5.34
2646 7330 4.093952 CAAGCGAGGCAAGCACGG 62.094 66.667 6.95 0.00 37.01 4.94
2650 7334 3.121030 CGAGGCAAGCACGGGAAG 61.121 66.667 0.00 0.00 0.00 3.46
2651 7335 2.747855 GAGGCAAGCACGGGAAGG 60.748 66.667 0.00 0.00 0.00 3.46
2652 7336 3.249189 AGGCAAGCACGGGAAGGA 61.249 61.111 0.00 0.00 0.00 3.36
2653 7337 2.747855 GGCAAGCACGGGAAGGAG 60.748 66.667 0.00 0.00 0.00 3.69
2654 7338 3.435186 GCAAGCACGGGAAGGAGC 61.435 66.667 0.00 0.00 0.00 4.70
2655 7339 3.121030 CAAGCACGGGAAGGAGCG 61.121 66.667 0.00 0.00 0.00 5.03
2656 7340 3.311110 AAGCACGGGAAGGAGCGA 61.311 61.111 0.00 0.00 0.00 4.93
2657 7341 2.660064 AAGCACGGGAAGGAGCGAT 61.660 57.895 0.00 0.00 0.00 4.58
2658 7342 2.579684 AAGCACGGGAAGGAGCGATC 62.580 60.000 0.00 0.00 0.00 3.69
2659 7343 2.278857 CACGGGAAGGAGCGATCG 60.279 66.667 11.69 11.69 0.00 3.69
2660 7344 2.439701 ACGGGAAGGAGCGATCGA 60.440 61.111 21.57 0.00 0.00 3.59
2741 7446 5.278463 GGATTATACGACGGCCTGTTAACTA 60.278 44.000 7.22 0.00 0.00 2.24
2807 7518 4.272489 TGATTTGGCTAGAAAGTGGATGG 58.728 43.478 0.00 0.00 0.00 3.51
2861 7572 2.563134 GGGTGGATGGGAGGATAGCTAT 60.563 54.545 5.76 5.76 0.00 2.97
2989 7707 2.358247 GGACACGGTGGCGTGATT 60.358 61.111 13.48 0.00 41.92 2.57
3026 7744 1.001406 GATGGATAAGCTGTCCGAGGG 59.999 57.143 12.37 0.00 38.64 4.30
3109 7827 1.435515 GAGCACGGCGAGAATCTCT 59.564 57.895 16.62 0.00 0.00 3.10
3114 7832 1.134965 CACGGCGAGAATCTCTTCCTT 60.135 52.381 16.62 0.68 31.27 3.36
3213 7932 2.165437 GAGATCAACCTCGAGCTTGAGT 59.835 50.000 26.10 15.50 30.14 3.41
3223 7943 2.490217 GCTTGAGTAGCTCCGCGA 59.510 61.111 8.23 0.00 46.77 5.87
3279 7999 0.598680 CTCGTCATCCCGATTGGCTC 60.599 60.000 0.00 0.00 36.08 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.449698 AGGAAGTTTTGCAACATTAGTGATG 58.550 36.000 0.00 0.00 41.71 3.07
7 8 6.655078 AGGAAGTTTTGCAACATTAGTGAT 57.345 33.333 0.00 0.00 35.05 3.06
8 9 6.460953 GGAAGGAAGTTTTGCAACATTAGTGA 60.461 38.462 0.00 0.00 35.05 3.41
9 10 5.691754 GGAAGGAAGTTTTGCAACATTAGTG 59.308 40.000 0.00 0.00 35.05 2.74
10 11 5.362430 TGGAAGGAAGTTTTGCAACATTAGT 59.638 36.000 0.00 0.00 35.05 2.24
11 12 5.691754 GTGGAAGGAAGTTTTGCAACATTAG 59.308 40.000 0.00 0.00 35.05 1.73
12 13 5.127845 TGTGGAAGGAAGTTTTGCAACATTA 59.872 36.000 0.00 0.00 35.05 1.90
13 14 4.081198 TGTGGAAGGAAGTTTTGCAACATT 60.081 37.500 0.00 0.00 35.05 2.71
14 15 3.450457 TGTGGAAGGAAGTTTTGCAACAT 59.550 39.130 0.00 0.00 35.05 2.71
15 16 2.828520 TGTGGAAGGAAGTTTTGCAACA 59.171 40.909 0.00 0.00 35.05 3.33
16 17 3.518634 TGTGGAAGGAAGTTTTGCAAC 57.481 42.857 0.00 0.00 0.00 4.17
17 18 3.513515 ACTTGTGGAAGGAAGTTTTGCAA 59.486 39.130 0.00 0.00 32.95 4.08
18 19 3.096092 ACTTGTGGAAGGAAGTTTTGCA 58.904 40.909 0.00 0.00 32.95 4.08
19 20 3.801114 ACTTGTGGAAGGAAGTTTTGC 57.199 42.857 0.00 0.00 32.95 3.68
20 21 5.691754 GCATAACTTGTGGAAGGAAGTTTTG 59.308 40.000 0.00 0.00 41.53 2.44
21 22 5.362430 TGCATAACTTGTGGAAGGAAGTTTT 59.638 36.000 0.00 0.00 41.53 2.43
22 23 4.892934 TGCATAACTTGTGGAAGGAAGTTT 59.107 37.500 0.00 0.00 41.53 2.66
23 24 4.469657 TGCATAACTTGTGGAAGGAAGTT 58.530 39.130 0.00 0.00 43.28 2.66
24 25 4.098914 TGCATAACTTGTGGAAGGAAGT 57.901 40.909 0.00 0.00 33.75 3.01
25 26 4.278170 TGTTGCATAACTTGTGGAAGGAAG 59.722 41.667 0.00 0.00 37.68 3.46
26 27 4.211125 TGTTGCATAACTTGTGGAAGGAA 58.789 39.130 0.00 0.00 37.68 3.36
27 28 3.826524 TGTTGCATAACTTGTGGAAGGA 58.173 40.909 0.00 0.00 37.68 3.36
28 29 4.582701 TTGTTGCATAACTTGTGGAAGG 57.417 40.909 0.00 0.00 37.68 3.46
29 30 7.699391 CAGATATTGTTGCATAACTTGTGGAAG 59.301 37.037 0.00 0.00 37.68 3.46
30 31 7.537715 CAGATATTGTTGCATAACTTGTGGAA 58.462 34.615 0.00 0.00 37.68 3.53
31 32 6.404623 GCAGATATTGTTGCATAACTTGTGGA 60.405 38.462 0.00 0.00 40.02 4.02
32 33 5.745294 GCAGATATTGTTGCATAACTTGTGG 59.255 40.000 0.00 0.00 40.02 4.17
33 34 6.324042 TGCAGATATTGTTGCATAACTTGTG 58.676 36.000 6.44 0.00 44.72 3.33
34 35 6.513806 TGCAGATATTGTTGCATAACTTGT 57.486 33.333 6.44 0.00 44.72 3.16
43 44 4.497300 ACCAATGTTGCAGATATTGTTGC 58.503 39.130 14.51 2.02 35.69 4.17
44 45 7.041916 ACAAAACCAATGTTGCAGATATTGTTG 60.042 33.333 14.51 14.01 35.69 3.33
45 46 6.991531 ACAAAACCAATGTTGCAGATATTGTT 59.008 30.769 14.51 8.81 35.69 2.83
46 47 6.523840 ACAAAACCAATGTTGCAGATATTGT 58.476 32.000 14.51 0.00 35.69 2.71
47 48 7.424227 AACAAAACCAATGTTGCAGATATTG 57.576 32.000 10.81 10.81 39.43 1.90
84 85 7.864379 CAGAACTTTTGCAACAGAGATATTGTT 59.136 33.333 19.17 1.24 39.23 2.83
85 86 7.365741 CAGAACTTTTGCAACAGAGATATTGT 58.634 34.615 19.17 0.00 0.00 2.71
86 87 6.307318 GCAGAACTTTTGCAACAGAGATATTG 59.693 38.462 19.17 9.01 41.17 1.90
87 88 6.385033 GCAGAACTTTTGCAACAGAGATATT 58.615 36.000 19.17 2.52 41.17 1.28
88 89 5.947443 GCAGAACTTTTGCAACAGAGATAT 58.053 37.500 19.17 0.11 41.17 1.63
89 90 5.362556 GCAGAACTTTTGCAACAGAGATA 57.637 39.130 19.17 0.00 41.17 1.98
90 91 4.234530 GCAGAACTTTTGCAACAGAGAT 57.765 40.909 19.17 4.99 41.17 2.75
91 92 3.698029 GCAGAACTTTTGCAACAGAGA 57.302 42.857 19.17 0.00 41.17 3.10
99 100 4.442350 GTTCATGTTGCAGAACTTTTGC 57.558 40.909 8.81 0.00 40.63 3.68
112 113 4.831107 AGGTTTGCAACAAAGTTCATGTT 58.169 34.783 0.00 0.00 41.50 2.71
113 114 4.470334 AGGTTTGCAACAAAGTTCATGT 57.530 36.364 0.00 0.00 0.00 3.21
114 115 5.350914 TGAAAGGTTTGCAACAAAGTTCATG 59.649 36.000 0.00 0.00 0.00 3.07
115 116 5.486526 TGAAAGGTTTGCAACAAAGTTCAT 58.513 33.333 0.00 0.00 0.00 2.57
116 117 4.887748 TGAAAGGTTTGCAACAAAGTTCA 58.112 34.783 0.00 3.20 0.00 3.18
117 118 5.617609 GTTGAAAGGTTTGCAACAAAGTTC 58.382 37.500 0.00 0.41 41.04 3.01
118 119 4.151512 CGTTGAAAGGTTTGCAACAAAGTT 59.848 37.500 11.94 0.00 41.34 2.66
119 120 3.677596 CGTTGAAAGGTTTGCAACAAAGT 59.322 39.130 11.94 0.00 41.34 2.66
120 121 3.483411 GCGTTGAAAGGTTTGCAACAAAG 60.483 43.478 11.94 2.70 41.34 2.77
121 122 2.413453 GCGTTGAAAGGTTTGCAACAAA 59.587 40.909 11.94 0.00 41.34 2.83
122 123 1.996191 GCGTTGAAAGGTTTGCAACAA 59.004 42.857 11.94 0.00 41.34 2.83
123 124 1.067565 TGCGTTGAAAGGTTTGCAACA 60.068 42.857 11.94 0.00 41.34 3.33
124 125 1.634702 TGCGTTGAAAGGTTTGCAAC 58.365 45.000 0.00 3.10 38.73 4.17
125 126 1.996191 GTTGCGTTGAAAGGTTTGCAA 59.004 42.857 0.00 0.00 39.73 4.08
126 127 1.067565 TGTTGCGTTGAAAGGTTTGCA 60.068 42.857 0.00 0.00 0.00 4.08
127 128 1.634702 TGTTGCGTTGAAAGGTTTGC 58.365 45.000 0.00 0.00 0.00 3.68
128 129 3.443037 TGATGTTGCGTTGAAAGGTTTG 58.557 40.909 0.00 0.00 0.00 2.93
129 130 3.791973 TGATGTTGCGTTGAAAGGTTT 57.208 38.095 0.00 0.00 0.00 3.27
130 131 3.305335 GGATGATGTTGCGTTGAAAGGTT 60.305 43.478 0.00 0.00 0.00 3.50
131 132 2.228822 GGATGATGTTGCGTTGAAAGGT 59.771 45.455 0.00 0.00 0.00 3.50
132 133 2.489329 AGGATGATGTTGCGTTGAAAGG 59.511 45.455 0.00 0.00 0.00 3.11
133 134 3.837213 AGGATGATGTTGCGTTGAAAG 57.163 42.857 0.00 0.00 0.00 2.62
134 135 4.323417 ACTAGGATGATGTTGCGTTGAAA 58.677 39.130 0.00 0.00 0.00 2.69
135 136 3.937814 ACTAGGATGATGTTGCGTTGAA 58.062 40.909 0.00 0.00 0.00 2.69
136 137 3.610040 ACTAGGATGATGTTGCGTTGA 57.390 42.857 0.00 0.00 0.00 3.18
137 138 4.007282 CAACTAGGATGATGTTGCGTTG 57.993 45.455 0.00 0.00 35.39 4.10
142 143 4.393062 AGTTTCGCAACTAGGATGATGTTG 59.607 41.667 0.00 0.00 41.81 3.33
143 144 4.393062 CAGTTTCGCAACTAGGATGATGTT 59.607 41.667 0.00 0.00 41.69 2.71
144 145 3.935203 CAGTTTCGCAACTAGGATGATGT 59.065 43.478 0.00 0.00 41.69 3.06
145 146 4.183865 TCAGTTTCGCAACTAGGATGATG 58.816 43.478 0.00 0.00 41.69 3.07
146 147 4.471904 TCAGTTTCGCAACTAGGATGAT 57.528 40.909 0.00 0.00 41.69 2.45
147 148 3.953712 TCAGTTTCGCAACTAGGATGA 57.046 42.857 0.00 0.00 41.69 2.92
148 149 4.210120 GCTATCAGTTTCGCAACTAGGATG 59.790 45.833 0.00 0.00 41.69 3.51
149 150 4.100189 AGCTATCAGTTTCGCAACTAGGAT 59.900 41.667 0.00 3.31 41.69 3.24
150 151 3.447586 AGCTATCAGTTTCGCAACTAGGA 59.552 43.478 0.00 0.00 41.69 2.94
151 152 3.786635 AGCTATCAGTTTCGCAACTAGG 58.213 45.455 0.00 0.00 41.69 3.02
152 153 6.037098 ACTTAGCTATCAGTTTCGCAACTAG 58.963 40.000 0.00 0.00 41.69 2.57
153 154 5.962433 ACTTAGCTATCAGTTTCGCAACTA 58.038 37.500 0.00 0.00 41.69 2.24
154 155 4.822026 ACTTAGCTATCAGTTTCGCAACT 58.178 39.130 0.00 0.00 44.72 3.16
155 156 4.259451 CGACTTAGCTATCAGTTTCGCAAC 60.259 45.833 0.00 0.00 0.00 4.17
156 157 3.857665 CGACTTAGCTATCAGTTTCGCAA 59.142 43.478 0.00 0.00 0.00 4.85
157 158 3.435566 CGACTTAGCTATCAGTTTCGCA 58.564 45.455 0.00 0.00 0.00 5.10
158 159 2.216714 GCGACTTAGCTATCAGTTTCGC 59.783 50.000 12.91 12.91 31.61 4.70
159 160 3.240861 GTGCGACTTAGCTATCAGTTTCG 59.759 47.826 0.00 0.00 38.13 3.46
160 161 3.240861 CGTGCGACTTAGCTATCAGTTTC 59.759 47.826 0.00 0.00 38.13 2.78
161 162 3.179830 CGTGCGACTTAGCTATCAGTTT 58.820 45.455 0.00 0.00 38.13 2.66
162 163 2.479730 CCGTGCGACTTAGCTATCAGTT 60.480 50.000 0.00 0.00 38.13 3.16
163 164 1.065701 CCGTGCGACTTAGCTATCAGT 59.934 52.381 0.00 0.00 38.13 3.41
164 165 1.065701 ACCGTGCGACTTAGCTATCAG 59.934 52.381 0.00 0.00 38.13 2.90
165 166 1.100510 ACCGTGCGACTTAGCTATCA 58.899 50.000 0.00 0.00 38.13 2.15
166 167 3.490399 GATACCGTGCGACTTAGCTATC 58.510 50.000 0.00 0.00 38.13 2.08
167 168 2.228343 GGATACCGTGCGACTTAGCTAT 59.772 50.000 0.00 0.00 38.13 2.97
168 169 1.605710 GGATACCGTGCGACTTAGCTA 59.394 52.381 0.00 0.00 38.13 3.32
169 170 0.384669 GGATACCGTGCGACTTAGCT 59.615 55.000 0.00 0.00 38.13 3.32
170 171 2.882793 GGATACCGTGCGACTTAGC 58.117 57.895 0.00 0.00 37.71 3.09
183 184 3.057734 CTCTGGATTTAACGCGGGATAC 58.942 50.000 12.47 0.00 0.00 2.24
184 185 2.036733 CCTCTGGATTTAACGCGGGATA 59.963 50.000 12.47 0.00 0.00 2.59
185 186 1.202651 CCTCTGGATTTAACGCGGGAT 60.203 52.381 12.47 0.00 0.00 3.85
186 187 0.177141 CCTCTGGATTTAACGCGGGA 59.823 55.000 12.47 0.00 0.00 5.14
187 188 1.436983 GCCTCTGGATTTAACGCGGG 61.437 60.000 12.47 0.00 0.00 6.13
188 189 0.462047 AGCCTCTGGATTTAACGCGG 60.462 55.000 12.47 0.00 0.00 6.46
189 190 2.128035 CTAGCCTCTGGATTTAACGCG 58.872 52.381 3.53 3.53 0.00 6.01
190 191 1.867865 GCTAGCCTCTGGATTTAACGC 59.132 52.381 2.29 0.00 0.00 4.84
191 192 3.179443 TGCTAGCCTCTGGATTTAACG 57.821 47.619 13.29 0.00 0.00 3.18
192 193 4.572795 GTCTTGCTAGCCTCTGGATTTAAC 59.427 45.833 13.29 0.00 0.00 2.01
193 194 4.225042 TGTCTTGCTAGCCTCTGGATTTAA 59.775 41.667 13.29 0.00 0.00 1.52
194 195 3.774766 TGTCTTGCTAGCCTCTGGATTTA 59.225 43.478 13.29 0.00 0.00 1.40
195 196 2.573462 TGTCTTGCTAGCCTCTGGATTT 59.427 45.455 13.29 0.00 0.00 2.17
196 197 2.191400 TGTCTTGCTAGCCTCTGGATT 58.809 47.619 13.29 0.00 0.00 3.01
197 198 1.871418 TGTCTTGCTAGCCTCTGGAT 58.129 50.000 13.29 0.00 0.00 3.41
198 199 1.276421 GTTGTCTTGCTAGCCTCTGGA 59.724 52.381 13.29 0.28 0.00 3.86
199 200 1.731720 GTTGTCTTGCTAGCCTCTGG 58.268 55.000 13.29 0.00 0.00 3.86
200 201 1.354040 CGTTGTCTTGCTAGCCTCTG 58.646 55.000 13.29 0.00 0.00 3.35
201 202 0.247736 CCGTTGTCTTGCTAGCCTCT 59.752 55.000 13.29 0.00 0.00 3.69
202 203 0.037232 ACCGTTGTCTTGCTAGCCTC 60.037 55.000 13.29 0.49 0.00 4.70
203 204 0.396811 AACCGTTGTCTTGCTAGCCT 59.603 50.000 13.29 0.00 0.00 4.58
204 205 0.796927 GAACCGTTGTCTTGCTAGCC 59.203 55.000 13.29 0.00 0.00 3.93
205 206 1.797025 AGAACCGTTGTCTTGCTAGC 58.203 50.000 8.10 8.10 0.00 3.42
206 207 4.813296 AAAAGAACCGTTGTCTTGCTAG 57.187 40.909 0.00 0.00 0.00 3.42
207 208 6.050432 TCTTAAAAGAACCGTTGTCTTGCTA 58.950 36.000 0.00 0.00 30.73 3.49
208 209 4.879545 TCTTAAAAGAACCGTTGTCTTGCT 59.120 37.500 0.00 0.00 30.73 3.91
209 210 5.164606 TCTTAAAAGAACCGTTGTCTTGC 57.835 39.130 0.00 0.00 30.73 4.01
210 211 9.893305 AATATTCTTAAAAGAACCGTTGTCTTG 57.107 29.630 7.29 0.00 46.80 3.02
212 213 8.440833 CGAATATTCTTAAAAGAACCGTTGTCT 58.559 33.333 13.45 0.00 46.80 3.41
213 214 8.225777 ACGAATATTCTTAAAAGAACCGTTGTC 58.774 33.333 13.45 0.61 46.80 3.18
214 215 8.091385 ACGAATATTCTTAAAAGAACCGTTGT 57.909 30.769 13.45 3.57 46.80 3.32
215 216 7.421613 CGACGAATATTCTTAAAAGAACCGTTG 59.578 37.037 13.45 12.89 46.80 4.10
216 217 7.412237 CCGACGAATATTCTTAAAAGAACCGTT 60.412 37.037 13.45 3.59 46.80 4.44
217 218 6.035327 CCGACGAATATTCTTAAAAGAACCGT 59.965 38.462 13.45 16.55 46.80 4.83
218 219 6.408428 CCGACGAATATTCTTAAAAGAACCG 58.592 40.000 13.45 10.60 46.80 4.44
219 220 6.190264 GCCGACGAATATTCTTAAAAGAACC 58.810 40.000 13.45 0.00 46.80 3.62
220 221 6.190264 GGCCGACGAATATTCTTAAAAGAAC 58.810 40.000 13.45 0.00 46.80 3.01
221 222 5.005971 CGGCCGACGAATATTCTTAAAAGAA 59.994 40.000 24.07 7.56 46.59 2.52
222 223 5.978934 GGCCGACGAATATTCTTAAAAGA 57.021 39.130 13.45 0.00 0.00 2.52
238 239 2.503375 CACTACGTGTCGGCCGAC 60.503 66.667 43.88 43.88 44.77 4.79
239 240 2.554636 AACACTACGTGTCGGCCGA 61.555 57.895 27.28 27.28 46.79 5.54
240 241 2.049802 AACACTACGTGTCGGCCG 60.050 61.111 22.12 22.12 46.79 6.13
241 242 2.664436 GCAACACTACGTGTCGGCC 61.664 63.158 0.00 0.00 46.79 6.13
242 243 2.664436 GGCAACACTACGTGTCGGC 61.664 63.158 0.00 12.47 46.79 5.54
243 244 2.025418 GGGCAACACTACGTGTCGG 61.025 63.158 0.00 0.00 46.79 4.79
244 245 0.241749 TAGGGCAACACTACGTGTCG 59.758 55.000 0.00 0.00 46.79 4.35
245 246 2.667473 ATAGGGCAACACTACGTGTC 57.333 50.000 0.00 0.00 46.79 3.67
247 248 6.200286 CACTTATAATAGGGCAACACTACGTG 59.800 42.308 0.00 0.00 39.75 4.49
248 249 6.278363 CACTTATAATAGGGCAACACTACGT 58.722 40.000 0.00 0.00 39.74 3.57
249 250 5.694910 CCACTTATAATAGGGCAACACTACG 59.305 44.000 0.00 0.00 39.74 3.51
250 251 6.482308 CACCACTTATAATAGGGCAACACTAC 59.518 42.308 7.89 0.00 39.74 2.73
251 252 6.588204 CACCACTTATAATAGGGCAACACTA 58.412 40.000 7.89 0.00 39.74 2.74
252 253 5.437060 CACCACTTATAATAGGGCAACACT 58.563 41.667 7.89 0.00 39.74 3.55
253 254 4.036380 GCACCACTTATAATAGGGCAACAC 59.964 45.833 7.89 0.00 39.74 3.32
254 255 4.204012 GCACCACTTATAATAGGGCAACA 58.796 43.478 7.89 0.00 39.74 3.33
255 256 4.036380 GTGCACCACTTATAATAGGGCAAC 59.964 45.833 5.22 9.62 32.07 4.17
256 257 4.204012 GTGCACCACTTATAATAGGGCAA 58.796 43.478 5.22 4.55 32.07 4.52
257 258 3.434453 GGTGCACCACTTATAATAGGGCA 60.434 47.826 31.23 11.76 34.40 5.36
258 259 3.146847 GGTGCACCACTTATAATAGGGC 58.853 50.000 31.23 0.00 34.40 5.19
259 260 3.181458 ACGGTGCACCACTTATAATAGGG 60.181 47.826 34.16 15.85 34.40 3.53
260 261 4.067972 ACGGTGCACCACTTATAATAGG 57.932 45.455 34.16 16.05 34.40 2.57
261 262 4.678287 CGTACGGTGCACCACTTATAATAG 59.322 45.833 34.16 16.56 34.40 1.73
341 342 8.962884 TGAGCAGCTTCTAAATTTATGTCATA 57.037 30.769 0.00 0.00 0.00 2.15
379 380 7.519843 AGCTTGACGTAGATGTAGTATTATCG 58.480 38.462 0.00 0.00 0.00 2.92
380 381 9.757859 GTAGCTTGACGTAGATGTAGTATTATC 57.242 37.037 0.00 0.00 0.00 1.75
382 383 7.653311 TCGTAGCTTGACGTAGATGTAGTATTA 59.347 37.037 8.77 0.00 43.39 0.98
383 384 6.481313 TCGTAGCTTGACGTAGATGTAGTATT 59.519 38.462 8.77 0.00 43.39 1.89
384 385 5.987953 TCGTAGCTTGACGTAGATGTAGTAT 59.012 40.000 8.77 0.00 43.39 2.12
385 386 5.351458 TCGTAGCTTGACGTAGATGTAGTA 58.649 41.667 8.77 0.00 43.39 1.82
386 387 4.186926 TCGTAGCTTGACGTAGATGTAGT 58.813 43.478 8.77 0.00 43.39 2.73
387 388 4.790810 TCGTAGCTTGACGTAGATGTAG 57.209 45.455 8.77 0.00 43.39 2.74
388 389 4.872124 TCTTCGTAGCTTGACGTAGATGTA 59.128 41.667 12.61 0.00 42.14 2.29
389 390 3.688185 TCTTCGTAGCTTGACGTAGATGT 59.312 43.478 12.61 0.00 42.14 3.06
390 391 4.201832 ACTCTTCGTAGCTTGACGTAGATG 60.202 45.833 15.80 12.80 44.69 2.90
391 392 3.940221 ACTCTTCGTAGCTTGACGTAGAT 59.060 43.478 15.80 6.74 44.69 1.98
392 393 3.332919 ACTCTTCGTAGCTTGACGTAGA 58.667 45.455 14.97 14.97 43.95 2.59
393 394 3.743567 ACTCTTCGTAGCTTGACGTAG 57.256 47.619 8.77 8.79 43.39 3.51
394 395 4.494350 AAACTCTTCGTAGCTTGACGTA 57.506 40.909 8.77 0.00 43.39 3.57
395 396 3.366440 AAACTCTTCGTAGCTTGACGT 57.634 42.857 8.77 0.00 43.39 4.34
396 397 4.323868 CCTAAAACTCTTCGTAGCTTGACG 59.676 45.833 2.53 2.53 44.29 4.35
397 398 5.228665 ACCTAAAACTCTTCGTAGCTTGAC 58.771 41.667 0.00 0.00 0.00 3.18
398 399 5.464030 ACCTAAAACTCTTCGTAGCTTGA 57.536 39.130 0.00 0.00 0.00 3.02
399 400 7.508134 GTTTACCTAAAACTCTTCGTAGCTTG 58.492 38.462 0.00 0.00 43.52 4.01
400 401 7.649370 GTTTACCTAAAACTCTTCGTAGCTT 57.351 36.000 0.00 0.00 43.52 3.74
417 418 8.095169 CCGAGATAATTAATAGGCAGTTTACCT 58.905 37.037 0.00 0.00 41.57 3.08
418 419 7.148457 GCCGAGATAATTAATAGGCAGTTTACC 60.148 40.741 15.73 0.00 42.37 2.85
419 420 7.603024 AGCCGAGATAATTAATAGGCAGTTTAC 59.397 37.037 20.06 0.00 44.97 2.01
420 421 7.676947 AGCCGAGATAATTAATAGGCAGTTTA 58.323 34.615 20.06 0.00 44.97 2.01
421 422 6.534634 AGCCGAGATAATTAATAGGCAGTTT 58.465 36.000 20.06 4.41 44.97 2.66
422 423 6.115448 AGCCGAGATAATTAATAGGCAGTT 57.885 37.500 20.06 4.67 44.97 3.16
423 424 5.337652 GGAGCCGAGATAATTAATAGGCAGT 60.338 44.000 20.06 7.08 44.97 4.40
424 425 5.105146 AGGAGCCGAGATAATTAATAGGCAG 60.105 44.000 20.06 0.00 44.97 4.85
425 426 4.777896 AGGAGCCGAGATAATTAATAGGCA 59.222 41.667 20.06 0.00 44.97 4.75
426 427 5.346181 AGGAGCCGAGATAATTAATAGGC 57.654 43.478 13.84 13.84 43.07 3.93
427 428 5.659079 AGGAGGAGCCGAGATAATTAATAGG 59.341 44.000 0.00 0.00 43.43 2.57
428 429 6.378564 TCAGGAGGAGCCGAGATAATTAATAG 59.621 42.308 0.00 0.00 43.43 1.73
429 430 6.253758 TCAGGAGGAGCCGAGATAATTAATA 58.746 40.000 0.00 0.00 43.43 0.98
430 431 5.087323 TCAGGAGGAGCCGAGATAATTAAT 58.913 41.667 0.00 0.00 43.43 1.40
431 432 4.480115 TCAGGAGGAGCCGAGATAATTAA 58.520 43.478 0.00 0.00 43.43 1.40
432 433 4.114015 TCAGGAGGAGCCGAGATAATTA 57.886 45.455 0.00 0.00 43.43 1.40
433 434 2.964209 TCAGGAGGAGCCGAGATAATT 58.036 47.619 0.00 0.00 43.43 1.40
434 435 2.685106 TCAGGAGGAGCCGAGATAAT 57.315 50.000 0.00 0.00 43.43 1.28
435 436 2.685106 ATCAGGAGGAGCCGAGATAA 57.315 50.000 0.00 0.00 43.43 1.75
436 437 2.685106 AATCAGGAGGAGCCGAGATA 57.315 50.000 0.00 0.00 43.43 1.98
437 438 1.799933 AAATCAGGAGGAGCCGAGAT 58.200 50.000 0.00 0.00 43.43 2.75
438 439 1.482593 GAAAATCAGGAGGAGCCGAGA 59.517 52.381 0.00 0.00 43.43 4.04
439 440 1.208052 TGAAAATCAGGAGGAGCCGAG 59.792 52.381 0.00 0.00 43.43 4.63
440 441 1.208052 CTGAAAATCAGGAGGAGCCGA 59.792 52.381 0.00 0.00 40.71 5.54
441 442 1.661341 CTGAAAATCAGGAGGAGCCG 58.339 55.000 0.00 0.00 40.71 5.52
450 451 2.440409 CTCCACCCACCTGAAAATCAG 58.560 52.381 0.32 0.32 43.91 2.90
451 452 1.547675 GCTCCACCCACCTGAAAATCA 60.548 52.381 0.00 0.00 0.00 2.57
452 453 1.177401 GCTCCACCCACCTGAAAATC 58.823 55.000 0.00 0.00 0.00 2.17
453 454 0.251787 GGCTCCACCCACCTGAAAAT 60.252 55.000 0.00 0.00 0.00 1.82
454 455 1.152830 GGCTCCACCCACCTGAAAA 59.847 57.895 0.00 0.00 0.00 2.29
455 456 2.843545 GGCTCCACCCACCTGAAA 59.156 61.111 0.00 0.00 0.00 2.69
469 470 4.635963 AAGGGGGTGGAAGGGGCT 62.636 66.667 0.00 0.00 0.00 5.19
470 471 4.062032 GAAGGGGGTGGAAGGGGC 62.062 72.222 0.00 0.00 0.00 5.80
471 472 2.204306 AGAAGGGGGTGGAAGGGG 60.204 66.667 0.00 0.00 0.00 4.79
472 473 2.309504 GGAGAAGGGGGTGGAAGGG 61.310 68.421 0.00 0.00 0.00 3.95
473 474 1.140134 TTGGAGAAGGGGGTGGAAGG 61.140 60.000 0.00 0.00 0.00 3.46
474 475 1.002857 ATTGGAGAAGGGGGTGGAAG 58.997 55.000 0.00 0.00 0.00 3.46
475 476 0.999712 GATTGGAGAAGGGGGTGGAA 59.000 55.000 0.00 0.00 0.00 3.53
476 477 0.919289 GGATTGGAGAAGGGGGTGGA 60.919 60.000 0.00 0.00 0.00 4.02
477 478 1.214305 TGGATTGGAGAAGGGGGTGG 61.214 60.000 0.00 0.00 0.00 4.61
478 479 0.704076 TTGGATTGGAGAAGGGGGTG 59.296 55.000 0.00 0.00 0.00 4.61
479 480 1.466858 TTTGGATTGGAGAAGGGGGT 58.533 50.000 0.00 0.00 0.00 4.95
480 481 2.854736 ATTTGGATTGGAGAAGGGGG 57.145 50.000 0.00 0.00 0.00 5.40
481 482 3.638627 GCTAATTTGGATTGGAGAAGGGG 59.361 47.826 0.00 0.00 0.00 4.79
482 483 3.638627 GGCTAATTTGGATTGGAGAAGGG 59.361 47.826 0.00 0.00 0.00 3.95
483 484 4.280819 TGGCTAATTTGGATTGGAGAAGG 58.719 43.478 0.00 0.00 0.00 3.46
484 485 5.361857 ACATGGCTAATTTGGATTGGAGAAG 59.638 40.000 0.00 0.00 0.00 2.85
485 486 5.271598 ACATGGCTAATTTGGATTGGAGAA 58.728 37.500 0.00 0.00 0.00 2.87
486 487 4.870636 ACATGGCTAATTTGGATTGGAGA 58.129 39.130 0.00 0.00 0.00 3.71
487 488 5.353938 CAACATGGCTAATTTGGATTGGAG 58.646 41.667 0.00 0.00 0.00 3.86
488 489 4.382901 GCAACATGGCTAATTTGGATTGGA 60.383 41.667 0.00 0.00 0.00 3.53
489 490 3.872771 GCAACATGGCTAATTTGGATTGG 59.127 43.478 0.00 0.00 0.00 3.16
490 491 4.761975 AGCAACATGGCTAATTTGGATTG 58.238 39.130 0.00 0.00 43.70 2.67
491 492 4.713321 AGAGCAACATGGCTAATTTGGATT 59.287 37.500 0.00 0.00 45.99 3.01
492 493 4.284178 AGAGCAACATGGCTAATTTGGAT 58.716 39.130 0.00 0.00 45.99 3.41
493 494 3.700538 AGAGCAACATGGCTAATTTGGA 58.299 40.909 0.00 0.00 45.99 3.53
494 495 4.460948 AAGAGCAACATGGCTAATTTGG 57.539 40.909 0.00 0.00 45.99 3.28
495 496 6.624423 AGTAAAGAGCAACATGGCTAATTTG 58.376 36.000 12.78 3.17 45.99 2.32
496 497 6.840780 AGTAAAGAGCAACATGGCTAATTT 57.159 33.333 0.00 5.03 45.99 1.82
497 498 6.840780 AAGTAAAGAGCAACATGGCTAATT 57.159 33.333 0.00 0.00 45.99 1.40
498 499 7.938140 TTAAGTAAAGAGCAACATGGCTAAT 57.062 32.000 0.00 0.00 45.99 1.73
499 500 7.753309 TTTAAGTAAAGAGCAACATGGCTAA 57.247 32.000 0.00 0.00 45.99 3.09
500 501 7.447238 ACTTTTAAGTAAAGAGCAACATGGCTA 59.553 33.333 0.00 0.00 45.00 3.93
501 502 6.265422 ACTTTTAAGTAAAGAGCAACATGGCT 59.735 34.615 0.00 0.00 45.00 4.75
502 503 6.447162 ACTTTTAAGTAAAGAGCAACATGGC 58.553 36.000 0.00 0.00 45.00 4.40
503 504 8.564574 TGTACTTTTAAGTAAAGAGCAACATGG 58.435 33.333 4.03 0.00 45.00 3.66
522 523 9.971922 ACTTACGTAACTGAACTTATGTACTTT 57.028 29.630 3.29 0.00 30.93 2.66
523 524 9.617975 GACTTACGTAACTGAACTTATGTACTT 57.382 33.333 3.29 0.00 30.93 2.24
524 525 9.007901 AGACTTACGTAACTGAACTTATGTACT 57.992 33.333 3.29 0.00 30.93 2.73
527 528 7.967303 GCTAGACTTACGTAACTGAACTTATGT 59.033 37.037 3.29 0.00 31.95 2.29
528 529 7.966753 TGCTAGACTTACGTAACTGAACTTATG 59.033 37.037 3.29 0.00 0.00 1.90
529 530 8.048534 TGCTAGACTTACGTAACTGAACTTAT 57.951 34.615 3.29 0.00 0.00 1.73
530 531 7.439157 TGCTAGACTTACGTAACTGAACTTA 57.561 36.000 3.29 0.00 0.00 2.24
531 532 6.323203 TGCTAGACTTACGTAACTGAACTT 57.677 37.500 3.29 0.00 0.00 2.66
532 533 5.954296 TGCTAGACTTACGTAACTGAACT 57.046 39.130 3.29 4.58 0.00 3.01
533 534 7.967303 AGTAATGCTAGACTTACGTAACTGAAC 59.033 37.037 3.29 0.00 33.93 3.18
534 535 7.966753 CAGTAATGCTAGACTTACGTAACTGAA 59.033 37.037 3.29 0.00 33.93 3.02
535 536 7.120285 ACAGTAATGCTAGACTTACGTAACTGA 59.880 37.037 17.72 0.00 34.87 3.41
536 537 7.249147 ACAGTAATGCTAGACTTACGTAACTG 58.751 38.462 3.29 8.76 36.43 3.16
537 538 7.388460 ACAGTAATGCTAGACTTACGTAACT 57.612 36.000 3.29 3.80 33.93 2.24
538 539 8.607459 TCTACAGTAATGCTAGACTTACGTAAC 58.393 37.037 3.29 0.00 33.93 2.50
539 540 8.722480 TCTACAGTAATGCTAGACTTACGTAA 57.278 34.615 7.94 7.94 33.93 3.18
540 541 8.771766 CATCTACAGTAATGCTAGACTTACGTA 58.228 37.037 0.00 0.00 33.93 3.57
541 542 7.498239 TCATCTACAGTAATGCTAGACTTACGT 59.502 37.037 0.00 0.00 33.93 3.57
542 543 7.862648 TCATCTACAGTAATGCTAGACTTACG 58.137 38.462 0.00 0.67 33.93 3.18
545 546 9.372369 GTTTTCATCTACAGTAATGCTAGACTT 57.628 33.333 0.00 0.00 0.00 3.01
546 547 8.531982 TGTTTTCATCTACAGTAATGCTAGACT 58.468 33.333 0.00 0.00 0.00 3.24
547 548 8.703604 TGTTTTCATCTACAGTAATGCTAGAC 57.296 34.615 0.00 0.00 0.00 2.59
548 549 9.719355 TTTGTTTTCATCTACAGTAATGCTAGA 57.281 29.630 0.00 0.00 0.00 2.43
549 550 9.760660 GTTTGTTTTCATCTACAGTAATGCTAG 57.239 33.333 0.00 0.00 0.00 3.42
550 551 9.278978 TGTTTGTTTTCATCTACAGTAATGCTA 57.721 29.630 0.00 0.00 0.00 3.49
551 552 8.076178 GTGTTTGTTTTCATCTACAGTAATGCT 58.924 33.333 0.00 0.00 0.00 3.79
552 553 7.059488 CGTGTTTGTTTTCATCTACAGTAATGC 59.941 37.037 0.00 0.00 0.00 3.56
553 554 8.279800 TCGTGTTTGTTTTCATCTACAGTAATG 58.720 33.333 0.00 0.00 0.00 1.90
554 555 8.280497 GTCGTGTTTGTTTTCATCTACAGTAAT 58.720 33.333 0.00 0.00 0.00 1.89
555 556 7.254522 GGTCGTGTTTGTTTTCATCTACAGTAA 60.255 37.037 0.00 0.00 0.00 2.24
556 557 6.201425 GGTCGTGTTTGTTTTCATCTACAGTA 59.799 38.462 0.00 0.00 0.00 2.74
560 561 4.025480 ACGGTCGTGTTTGTTTTCATCTAC 60.025 41.667 0.00 0.00 0.00 2.59
571 572 4.410492 ACTACTACTACGGTCGTGTTTG 57.590 45.455 6.25 0.00 0.00 2.93
575 576 3.000724 GCACTACTACTACTACGGTCGTG 59.999 52.174 6.25 0.00 0.00 4.35
576 577 3.118956 AGCACTACTACTACTACGGTCGT 60.119 47.826 0.69 0.69 0.00 4.34
577 578 3.244814 CAGCACTACTACTACTACGGTCG 59.755 52.174 0.00 0.00 0.00 4.79
580 581 3.204526 AGCAGCACTACTACTACTACGG 58.795 50.000 0.00 0.00 0.00 4.02
581 582 4.879104 AAGCAGCACTACTACTACTACG 57.121 45.455 0.00 0.00 0.00 3.51
622 3150 6.545666 GGTCAAACCCATGATGTGATGTATTA 59.454 38.462 0.00 0.00 30.04 0.98
625 3153 4.263683 TGGTCAAACCCATGATGTGATGTA 60.264 41.667 0.00 0.00 37.50 2.29
637 3165 0.741915 GCTTCGTTTGGTCAAACCCA 59.258 50.000 17.60 5.26 45.78 4.51
678 3226 3.206150 CCGTTTATTGGTCTGATCCCAG 58.794 50.000 0.00 0.00 41.74 4.45
687 3235 0.179174 CTTGGCGCCGTTTATTGGTC 60.179 55.000 23.90 0.00 0.00 4.02
689 3237 0.523966 TTCTTGGCGCCGTTTATTGG 59.476 50.000 23.90 5.25 0.00 3.16
694 3242 2.330041 CGTTTCTTGGCGCCGTTT 59.670 55.556 23.90 0.00 0.00 3.60
695 3243 4.322385 GCGTTTCTTGGCGCCGTT 62.322 61.111 23.90 0.00 46.93 4.44
721 5254 3.385749 GATTCAGAGGGCCGGCGAA 62.386 63.158 22.54 18.07 0.00 4.70
729 5262 2.765135 TCTTGCTCAGAGATTCAGAGGG 59.235 50.000 0.00 0.00 31.57 4.30
730 5263 4.141892 ACATCTTGCTCAGAGATTCAGAGG 60.142 45.833 0.00 0.61 33.87 3.69
795 5334 4.023980 CACCATAGTCTAGTCCAGTCCAA 58.976 47.826 0.00 0.00 0.00 3.53
878 5425 2.102588 CGAGACAGGGGAATAACCGAAT 59.897 50.000 0.00 0.00 40.11 3.34
880 5427 1.108776 CGAGACAGGGGAATAACCGA 58.891 55.000 0.00 0.00 40.11 4.69
881 5428 0.104304 CCGAGACAGGGGAATAACCG 59.896 60.000 0.00 0.00 40.11 4.44
882 5429 1.492764 TCCGAGACAGGGGAATAACC 58.507 55.000 0.00 0.00 38.08 2.85
883 5430 2.037381 GGATCCGAGACAGGGGAATAAC 59.963 54.545 0.00 0.00 35.60 1.89
884 5431 2.090719 AGGATCCGAGACAGGGGAATAA 60.091 50.000 5.98 0.00 35.60 1.40
885 5432 1.503784 AGGATCCGAGACAGGGGAATA 59.496 52.381 5.98 0.00 35.60 1.75
886 5433 0.266152 AGGATCCGAGACAGGGGAAT 59.734 55.000 5.98 0.00 35.60 3.01
963 5527 4.444838 CGCGGGGTCGGTTGATGA 62.445 66.667 0.00 0.00 36.79 2.92
1027 5609 1.129811 CGTTGAACGACCCCATTTAGC 59.870 52.381 13.13 0.00 46.05 3.09
1398 5980 0.898320 AGTTGACAGATCCACGGAGG 59.102 55.000 0.00 0.00 39.47 4.30
1441 6035 7.250032 TGAGCTATCTGAAGTATGGCATTAT 57.750 36.000 4.78 0.00 33.62 1.28
1451 6045 5.234466 ACCAACTTTGAGCTATCTGAAGT 57.766 39.130 0.00 0.00 35.46 3.01
1468 6062 6.915843 ACGAATTTCACACAATTTCTACCAAC 59.084 34.615 0.00 0.00 0.00 3.77
1507 6103 8.862325 ACATTACCAAATTGATGTCTCAGTTA 57.138 30.769 0.00 0.00 31.71 2.24
1519 6115 7.530190 GCAACGAAATCAAACATTACCAAATTG 59.470 33.333 0.00 0.00 0.00 2.32
1600 6199 0.099082 GCAATTGCAGAGAGCTCAGC 59.901 55.000 25.36 16.78 45.94 4.26
1601 6200 0.374063 CGCAATTGCAGAGAGCTCAG 59.626 55.000 28.77 6.48 45.94 3.35
1602 6201 0.037046 TCGCAATTGCAGAGAGCTCA 60.037 50.000 28.77 0.00 45.94 4.26
1603 6202 1.261089 GATCGCAATTGCAGAGAGCTC 59.739 52.381 28.77 16.22 45.94 4.09
1604 6203 1.297664 GATCGCAATTGCAGAGAGCT 58.702 50.000 28.77 12.25 45.94 4.09
1605 6204 0.042361 CGATCGCAATTGCAGAGAGC 60.042 55.000 28.77 19.11 45.96 4.09
1606 6205 1.257415 GACGATCGCAATTGCAGAGAG 59.743 52.381 28.77 22.28 42.21 3.20
1607 6206 1.280982 GACGATCGCAATTGCAGAGA 58.719 50.000 28.77 18.49 42.21 3.10
1608 6207 1.001624 TGACGATCGCAATTGCAGAG 58.998 50.000 28.77 18.32 42.21 3.35
1609 6208 1.594397 GATGACGATCGCAATTGCAGA 59.406 47.619 28.77 24.59 42.21 4.26
1610 6209 1.596260 AGATGACGATCGCAATTGCAG 59.404 47.619 28.77 20.64 42.21 4.41
1611 6210 1.594397 GAGATGACGATCGCAATTGCA 59.406 47.619 28.77 16.65 42.21 4.08
1674 6273 2.229792 TGGTCATCAAAACTGGCTGAC 58.770 47.619 0.00 0.00 36.38 3.51
1717 6319 2.033049 GCCATTGCAGTGAGCTTATGAG 59.967 50.000 11.31 0.00 45.94 2.90
1849 6474 0.042281 GGTGGTAGTACCCCTCCAGT 59.958 60.000 16.91 0.00 37.50 4.00
2183 6808 2.047560 GTCAGGGTGCCCGTACAC 60.048 66.667 0.98 0.00 41.95 2.90
2268 6905 3.884091 ACTACTAATCAGACGCCACTAGG 59.116 47.826 0.00 0.00 38.23 3.02
2392 7032 4.267452 TCTGCAAAGTTTCATTTCAAACGC 59.733 37.500 0.00 0.00 40.60 4.84
2414 7054 7.951530 TTTCCATTTGAAGCTTTTCTCAATC 57.048 32.000 0.00 0.00 33.63 2.67
2426 7066 5.123820 TCCAGCTCGTATTTTCCATTTGAAG 59.876 40.000 0.00 0.00 33.63 3.02
2443 7083 3.243839 TGGCAAAACTTTTGATCCAGCTC 60.244 43.478 16.90 0.00 0.00 4.09
2496 7136 0.043940 AACATCAGGAGAGGGAGGCT 59.956 55.000 0.00 0.00 0.00 4.58
2544 7184 3.812609 ACGCTGACAACATGTATCACAAA 59.187 39.130 0.00 0.00 0.00 2.83
2636 7280 2.747855 CTCCTTCCCGTGCTTGCC 60.748 66.667 0.00 0.00 0.00 4.52
2641 7325 2.586357 GATCGCTCCTTCCCGTGC 60.586 66.667 0.00 0.00 0.00 5.34
2642 7326 2.278857 CGATCGCTCCTTCCCGTG 60.279 66.667 0.26 0.00 0.00 4.94
2643 7327 2.439701 TCGATCGCTCCTTCCCGT 60.440 61.111 11.09 0.00 0.00 5.28
2644 7328 2.333225 CTCGATCGCTCCTTCCCG 59.667 66.667 11.09 0.00 0.00 5.14
2645 7329 2.028337 GCTCGATCGCTCCTTCCC 59.972 66.667 11.09 0.00 0.00 3.97
2646 7330 1.299773 CAGCTCGATCGCTCCTTCC 60.300 63.158 11.09 0.00 38.41 3.46
2647 7331 0.101399 TTCAGCTCGATCGCTCCTTC 59.899 55.000 11.09 0.00 38.41 3.46
2648 7332 0.102120 CTTCAGCTCGATCGCTCCTT 59.898 55.000 11.09 0.00 38.41 3.36
2649 7333 1.732917 CTTCAGCTCGATCGCTCCT 59.267 57.895 11.09 3.14 38.41 3.69
2650 7334 1.299773 CCTTCAGCTCGATCGCTCC 60.300 63.158 11.09 0.56 38.41 4.70
2651 7335 1.948635 GCCTTCAGCTCGATCGCTC 60.949 63.158 11.09 4.19 38.41 5.03
2652 7336 2.105930 GCCTTCAGCTCGATCGCT 59.894 61.111 11.09 0.00 41.90 4.93
2653 7337 2.964389 GGCCTTCAGCTCGATCGC 60.964 66.667 11.09 0.00 43.05 4.58
2654 7338 2.279784 GGGCCTTCAGCTCGATCG 60.280 66.667 9.36 9.36 43.05 3.69
2741 7446 8.521176 AGCTATTTATCTATCGACCGTTAACAT 58.479 33.333 6.39 0.00 0.00 2.71
2772 7477 2.816087 GCCAAATCAAACAGAGAGAGCA 59.184 45.455 0.00 0.00 0.00 4.26
2861 7572 5.599999 TTCAAATTGGGGAAAAGTTTCGA 57.400 34.783 0.00 0.00 38.06 3.71
3005 7723 1.688735 CCTCGGACAGCTTATCCATCA 59.311 52.381 13.15 0.00 35.83 3.07
3067 7785 2.746277 GCGCTGGTCCAAATCGGT 60.746 61.111 0.00 0.00 35.57 4.69
3109 7827 1.069090 AGCTTGTCGACGCAAGGAA 59.931 52.632 23.72 1.36 44.29 3.36
3114 7832 0.319469 TGAATCAGCTTGTCGACGCA 60.319 50.000 16.22 2.89 0.00 5.24
3223 7943 2.035237 TTGTTCCTTCGGCCACTCGT 62.035 55.000 2.24 0.00 0.00 4.18
3279 7999 1.876714 CAATACCGCGACCACTCCG 60.877 63.158 8.23 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.