Multiple sequence alignment - TraesCS2B01G487000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G487000 chr2B 100.000 4498 0 0 1 4498 683310992 683306495 0.000000e+00 8307.0
1 TraesCS2B01G487000 chr2B 97.691 1646 34 3 2855 4497 683590456 683588812 0.000000e+00 2826.0
2 TraesCS2B01G487000 chr2B 92.798 1458 70 5 863 2301 683487589 683486148 0.000000e+00 2078.0
3 TraesCS2B01G487000 chr2B 94.537 1263 41 10 2494 3754 683385005 683383769 0.000000e+00 1925.0
4 TraesCS2B01G487000 chr2B 90.827 1439 65 21 899 2301 683592327 683590920 0.000000e+00 1864.0
5 TraesCS2B01G487000 chr2B 90.212 1461 92 23 863 2301 683274713 683273282 0.000000e+00 1858.0
6 TraesCS2B01G487000 chr2B 90.417 1440 72 26 899 2301 683386463 683385053 0.000000e+00 1834.0
7 TraesCS2B01G487000 chr2B 89.141 1455 86 32 863 2301 683689646 683688248 0.000000e+00 1746.0
8 TraesCS2B01G487000 chr2B 90.439 1297 86 16 2494 3759 683273234 683271945 0.000000e+00 1674.0
9 TraesCS2B01G487000 chr2B 95.694 627 19 6 2462 3087 683486152 683485533 0.000000e+00 1002.0
10 TraesCS2B01G487000 chr2B 96.801 594 19 0 2494 3087 683688200 683687607 0.000000e+00 992.0
11 TraesCS2B01G487000 chr2B 93.902 656 35 4 1 656 683275438 683274788 0.000000e+00 985.0
12 TraesCS2B01G487000 chr2B 90.678 708 41 9 1 708 683488277 683487595 0.000000e+00 918.0
13 TraesCS2B01G487000 chr2B 87.483 719 46 16 3072 3754 683484208 683483498 0.000000e+00 789.0
14 TraesCS2B01G487000 chr2B 87.344 719 47 18 3072 3754 683686279 683685569 0.000000e+00 784.0
15 TraesCS2B01G487000 chr2B 86.499 674 76 9 35 708 683690310 683689652 0.000000e+00 726.0
16 TraesCS2B01G487000 chr2B 93.924 395 16 6 2464 2857 683590924 683590537 1.390000e-164 590.0
17 TraesCS2B01G487000 chr2B 89.087 449 49 0 1 449 683702620 683702172 3.930000e-155 558.0
18 TraesCS2B01G487000 chr2B 89.344 244 24 2 445 687 683694156 683693914 5.650000e-79 305.0
19 TraesCS2B01G487000 chr2B 96.552 145 5 0 705 849 107499974 107500118 1.620000e-59 241.0
20 TraesCS2B01G487000 chr2B 88.028 142 15 2 3788 3927 683747077 683746936 2.780000e-37 167.0
21 TraesCS2B01G487000 chr2B 87.500 120 14 1 3804 3922 683383370 683383251 2.180000e-28 137.0
22 TraesCS2B01G487000 chr2B 94.828 58 3 0 3791 3848 683271777 683271720 1.720000e-14 91.6
23 TraesCS2B01G487000 chr2B 100.000 28 0 0 2466 2493 683273286 683273259 8.000000e-03 52.8
24 TraesCS2B01G487000 chr2B 100.000 28 0 0 2466 2493 683385057 683385030 8.000000e-03 52.8
25 TraesCS2B01G487000 chr2D 91.391 1452 83 23 863 2301 571662468 571661046 0.000000e+00 1951.0
26 TraesCS2B01G487000 chr2D 90.000 1360 69 19 863 2189 571549909 571548584 0.000000e+00 1696.0
27 TraesCS2B01G487000 chr2D 91.020 735 35 5 2462 3186 571661050 571660337 0.000000e+00 963.0
28 TraesCS2B01G487000 chr2D 90.859 722 45 13 2475 3194 571548585 571547883 0.000000e+00 948.0
29 TraesCS2B01G487000 chr2D 90.732 669 60 1 1 669 571663197 571662531 0.000000e+00 891.0
30 TraesCS2B01G487000 chr2D 92.473 558 29 8 3212 3759 571660264 571659710 0.000000e+00 785.0
31 TraesCS2B01G487000 chr2D 89.423 520 45 8 3221 3739 571546244 571545734 0.000000e+00 647.0
32 TraesCS2B01G487000 chr2D 88.579 359 36 4 298 656 571550337 571549984 8.940000e-117 431.0
33 TraesCS2B01G487000 chr2D 82.850 414 54 10 3925 4327 571545143 571544736 5.530000e-94 355.0
34 TraesCS2B01G487000 chr2D 81.548 336 27 11 3363 3666 571873981 571873649 1.250000e-60 244.0
35 TraesCS2B01G487000 chr2D 96.552 58 2 0 3791 3848 571545402 571545345 3.700000e-16 97.1
36 TraesCS2B01G487000 chr2A 91.667 1140 68 16 863 1983 710275773 710274642 0.000000e+00 1554.0
37 TraesCS2B01G487000 chr2A 91.143 971 67 15 2461 3430 710274286 710273334 0.000000e+00 1299.0
38 TraesCS2B01G487000 chr2A 91.330 669 58 0 1 669 710276503 710275835 0.000000e+00 915.0
39 TraesCS2B01G487000 chr2A 90.462 692 46 13 3422 4098 710343180 710342494 0.000000e+00 894.0
40 TraesCS2B01G487000 chr2A 95.112 491 21 1 2540 3030 710344793 710344306 0.000000e+00 771.0
41 TraesCS2B01G487000 chr2A 84.420 629 75 13 3 626 20145191 20144581 8.330000e-167 597.0
42 TraesCS2B01G487000 chr2A 92.262 336 21 5 3426 3759 710273208 710272876 5.270000e-129 472.0
43 TraesCS2B01G487000 chr2A 91.901 284 17 2 2018 2301 710274562 710274285 4.220000e-105 392.0
44 TraesCS2B01G487000 chr2A 85.950 363 28 5 1939 2301 710345177 710344838 2.560000e-97 366.0
45 TraesCS2B01G487000 chr2A 83.508 382 26 13 3068 3424 710344303 710343934 5.610000e-84 322.0
46 TraesCS2B01G487000 chr2A 87.560 209 15 5 1886 2094 710345735 710345538 9.730000e-57 231.0
47 TraesCS2B01G487000 chr2A 94.245 139 8 0 2163 2301 710345538 710345400 3.520000e-51 213.0
48 TraesCS2B01G487000 chr2A 91.473 129 11 0 2462 2590 710345404 710345276 1.290000e-40 178.0
49 TraesCS2B01G487000 chr2A 83.226 155 13 5 4092 4245 710318667 710318525 3.650000e-26 130.0
50 TraesCS2B01G487000 chr2A 95.745 47 2 0 2466 2512 710344842 710344796 4.820000e-10 76.8
51 TraesCS2B01G487000 chr4D 82.810 541 78 4 5 543 465604962 465604435 1.890000e-128 470.0
52 TraesCS2B01G487000 chr4A 75.645 698 124 24 3 679 648745888 648745216 5.650000e-79 305.0
53 TraesCS2B01G487000 chr4A 81.957 327 51 7 1027 1349 541921872 541922194 2.060000e-68 270.0
54 TraesCS2B01G487000 chr4B 83.230 322 48 6 1027 1345 82277255 82276937 1.580000e-74 291.0
55 TraesCS2B01G487000 chr4B 93.923 181 8 3 2300 2478 83135495 83135674 2.060000e-68 270.0
56 TraesCS2B01G487000 chr4B 95.266 169 8 0 2297 2465 461850253 461850085 7.420000e-68 268.0
57 TraesCS2B01G487000 chr7B 94.595 185 7 3 2286 2469 741942522 741942704 2.650000e-72 283.0
58 TraesCS2B01G487000 chr7B 94.054 185 8 3 2286 2469 741871525 741871707 1.230000e-70 278.0
59 TraesCS2B01G487000 chr7B 95.833 168 7 0 2298 2465 697802574 697802741 5.730000e-69 272.0
60 TraesCS2B01G487000 chr7B 97.260 146 4 0 704 849 370208283 370208138 9.660000e-62 248.0
61 TraesCS2B01G487000 chr7B 96.053 152 5 1 705 856 665423377 665423227 3.480000e-61 246.0
62 TraesCS2B01G487000 chr3A 96.429 168 6 0 2297 2464 731100880 731100713 1.230000e-70 278.0
63 TraesCS2B01G487000 chr5B 95.882 170 7 0 2297 2466 678119823 678119654 4.430000e-70 276.0
64 TraesCS2B01G487000 chr5B 96.528 144 5 0 703 846 283999638 283999781 5.820000e-59 239.0
65 TraesCS2B01G487000 chr5B 96.503 143 5 0 704 846 638677324 638677466 2.090000e-58 237.0
66 TraesCS2B01G487000 chr7A 93.956 182 9 2 2295 2474 699482893 699482712 1.590000e-69 274.0
67 TraesCS2B01G487000 chr1B 91.710 193 12 3 2300 2491 530659793 530659604 9.590000e-67 265.0
68 TraesCS2B01G487000 chr1B 94.872 156 6 2 707 860 456301066 456300911 4.500000e-60 243.0
69 TraesCS2B01G487000 chr1B 94.156 154 8 1 704 857 437865166 437865318 2.710000e-57 233.0
70 TraesCS2B01G487000 chr3B 96.644 149 5 0 704 852 630397484 630397336 9.660000e-62 248.0
71 TraesCS2B01G487000 chr3B 96.575 146 4 1 707 851 127906731 127906586 1.620000e-59 241.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G487000 chr2B 683306495 683310992 4497 True 8307.000000 8307 100.000000 1 4498 1 chr2B.!!$R1 4497
1 TraesCS2B01G487000 chr2B 683588812 683592327 3515 True 1760.000000 2826 94.147333 899 4497 3 chr2B.!!$R7 3598
2 TraesCS2B01G487000 chr2B 683483498 683488277 4779 True 1196.750000 2078 91.663250 1 3754 4 chr2B.!!$R6 3753
3 TraesCS2B01G487000 chr2B 683383251 683386463 3212 True 987.200000 1925 93.113500 899 3922 4 chr2B.!!$R5 3023
4 TraesCS2B01G487000 chr2B 683271720 683275438 3718 True 932.280000 1858 93.876200 1 3848 5 chr2B.!!$R4 3847
5 TraesCS2B01G487000 chr2B 683685569 683694156 8587 True 910.600000 1746 89.825800 35 3754 5 chr2B.!!$R8 3719
6 TraesCS2B01G487000 chr2D 571659710 571663197 3487 True 1147.500000 1951 91.404000 1 3759 4 chr2D.!!$R3 3758
7 TraesCS2B01G487000 chr2D 571544736 571550337 5601 True 695.683333 1696 89.710500 298 4327 6 chr2D.!!$R2 4029
8 TraesCS2B01G487000 chr2A 710272876 710276503 3627 True 926.400000 1554 91.660600 1 3759 5 chr2A.!!$R3 3758
9 TraesCS2B01G487000 chr2A 20144581 20145191 610 True 597.000000 597 84.420000 3 626 1 chr2A.!!$R1 623
10 TraesCS2B01G487000 chr2A 710342494 710345735 3241 True 381.475000 894 90.506875 1886 4098 8 chr2A.!!$R4 2212
11 TraesCS2B01G487000 chr4D 465604435 465604962 527 True 470.000000 470 82.810000 5 543 1 chr4D.!!$R1 538
12 TraesCS2B01G487000 chr4A 648745216 648745888 672 True 305.000000 305 75.645000 3 679 1 chr4A.!!$R1 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 4632 0.047802 AGGGATTGGAGGGGATTGGA 59.952 55.0 0.0 0.0 0.0 3.53 F
759 4637 0.121197 TTGGAGGGGATTGGAGAGGT 59.879 55.0 0.0 0.0 0.0 3.85 F
760 4638 0.121197 TGGAGGGGATTGGAGAGGTT 59.879 55.0 0.0 0.0 0.0 3.50 F
829 4707 0.178961 AAACCTCTCCAAACCCTGCC 60.179 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2675 7198 1.258445 AACTCGTGATCTTCCCCGCT 61.258 55.000 0.0 0.0 0.00 5.52 R
3267 10889 5.983720 CGGTGGATTAGAAACACAGTATAGG 59.016 44.000 0.0 0.0 36.87 2.57 R
3277 10899 3.933332 CCAGACTTCGGTGGATTAGAAAC 59.067 47.826 0.0 0.0 35.67 2.78 R
3572 12120 5.372343 TGAAGCCATTAAGCAAGATCCTA 57.628 39.130 0.0 0.0 34.23 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 4032 1.942677 TCACGTTTCCTTTCTTCGCA 58.057 45.000 0.00 0.00 0.00 5.10
416 4252 0.111061 ACATGAGGTCAAGGCTGCAA 59.889 50.000 0.00 0.00 0.00 4.08
422 4258 0.899717 GGTCAAGGCTGCAATTGGGA 60.900 55.000 7.72 0.00 0.00 4.37
459 4295 1.659794 GGCGCCAACAACATCAAGT 59.340 52.632 24.80 0.00 0.00 3.16
519 4378 9.533831 ACCTATTTTCAATAGGATTGACAAGTT 57.466 29.630 23.67 0.84 42.90 2.66
522 4381 8.970691 ATTTTCAATAGGATTGACAAGTTTCG 57.029 30.769 1.39 0.00 0.00 3.46
523 4382 6.494893 TTCAATAGGATTGACAAGTTTCGG 57.505 37.500 1.39 0.00 0.00 4.30
524 4383 5.556915 TCAATAGGATTGACAAGTTTCGGT 58.443 37.500 0.00 0.00 0.00 4.69
525 4384 5.642063 TCAATAGGATTGACAAGTTTCGGTC 59.358 40.000 0.00 0.00 34.63 4.79
526 4385 3.485463 AGGATTGACAAGTTTCGGTCA 57.515 42.857 0.00 0.00 41.93 4.02
527 4386 4.021102 AGGATTGACAAGTTTCGGTCAT 57.979 40.909 0.00 0.00 43.01 3.06
528 4387 4.398319 AGGATTGACAAGTTTCGGTCATT 58.602 39.130 0.00 0.00 43.01 2.57
529 4388 5.556915 AGGATTGACAAGTTTCGGTCATTA 58.443 37.500 0.00 0.00 43.01 1.90
530 4389 6.180472 AGGATTGACAAGTTTCGGTCATTAT 58.820 36.000 0.00 0.00 43.01 1.28
531 4390 6.316390 AGGATTGACAAGTTTCGGTCATTATC 59.684 38.462 0.00 0.00 43.01 1.75
532 4391 5.524511 TTGACAAGTTTCGGTCATTATCG 57.475 39.130 0.00 0.00 43.01 2.92
533 4392 4.562082 TGACAAGTTTCGGTCATTATCGT 58.438 39.130 0.00 0.00 39.00 3.73
534 4393 4.992319 TGACAAGTTTCGGTCATTATCGTT 59.008 37.500 0.00 0.00 39.00 3.85
535 4394 5.119588 TGACAAGTTTCGGTCATTATCGTTC 59.880 40.000 0.00 0.00 39.00 3.95
536 4395 4.992319 ACAAGTTTCGGTCATTATCGTTCA 59.008 37.500 0.00 0.00 0.00 3.18
548 4407 2.629639 ATCGTTCAAATTTCGGCCAC 57.370 45.000 2.24 0.00 0.00 5.01
555 4414 2.619177 TCAAATTTCGGCCACTTTTCGA 59.381 40.909 2.24 0.00 0.00 3.71
562 4421 1.268352 CGGCCACTTTTCGATCCAAAA 59.732 47.619 2.24 0.00 0.00 2.44
687 4565 2.954684 TTGGTCGGGAGCAAGCGAT 61.955 57.895 9.07 0.00 43.00 4.58
702 4580 2.102474 GCGATCAGCTCATTCTTTGC 57.898 50.000 0.00 0.00 44.04 3.68
703 4581 1.268437 GCGATCAGCTCATTCTTTGCC 60.268 52.381 0.00 0.00 44.04 4.52
704 4582 2.286872 CGATCAGCTCATTCTTTGCCT 58.713 47.619 0.00 0.00 0.00 4.75
705 4583 3.461061 CGATCAGCTCATTCTTTGCCTA 58.539 45.455 0.00 0.00 0.00 3.93
706 4584 3.873361 CGATCAGCTCATTCTTTGCCTAA 59.127 43.478 0.00 0.00 0.00 2.69
707 4585 4.025061 CGATCAGCTCATTCTTTGCCTAAG 60.025 45.833 0.00 0.00 35.04 2.18
708 4586 3.614092 TCAGCTCATTCTTTGCCTAAGG 58.386 45.455 0.00 0.00 34.46 2.69
718 4596 2.669240 GCCTAAGGCCCTGTTCGT 59.331 61.111 0.00 0.00 44.06 3.85
719 4597 1.002502 GCCTAAGGCCCTGTTCGTT 60.003 57.895 0.00 0.00 44.06 3.85
720 4598 0.608308 GCCTAAGGCCCTGTTCGTTT 60.608 55.000 0.00 0.00 44.06 3.60
721 4599 1.339342 GCCTAAGGCCCTGTTCGTTTA 60.339 52.381 0.00 0.00 44.06 2.01
722 4600 2.876892 GCCTAAGGCCCTGTTCGTTTAA 60.877 50.000 0.00 0.00 44.06 1.52
723 4601 3.617284 CCTAAGGCCCTGTTCGTTTAAT 58.383 45.455 0.00 0.00 0.00 1.40
724 4602 3.626217 CCTAAGGCCCTGTTCGTTTAATC 59.374 47.826 0.00 0.00 0.00 1.75
725 4603 2.124277 AGGCCCTGTTCGTTTAATCC 57.876 50.000 0.00 0.00 0.00 3.01
726 4604 1.100510 GGCCCTGTTCGTTTAATCCC 58.899 55.000 0.00 0.00 0.00 3.85
727 4605 1.100510 GCCCTGTTCGTTTAATCCCC 58.899 55.000 0.00 0.00 0.00 4.81
728 4606 1.340697 GCCCTGTTCGTTTAATCCCCT 60.341 52.381 0.00 0.00 0.00 4.79
729 4607 2.640184 CCCTGTTCGTTTAATCCCCTC 58.360 52.381 0.00 0.00 0.00 4.30
730 4608 2.277084 CCTGTTCGTTTAATCCCCTCG 58.723 52.381 0.00 0.00 0.00 4.63
731 4609 1.664151 CTGTTCGTTTAATCCCCTCGC 59.336 52.381 0.00 0.00 0.00 5.03
732 4610 1.012086 GTTCGTTTAATCCCCTCGCC 58.988 55.000 0.00 0.00 0.00 5.54
733 4611 0.614294 TTCGTTTAATCCCCTCGCCA 59.386 50.000 0.00 0.00 0.00 5.69
734 4612 0.108041 TCGTTTAATCCCCTCGCCAC 60.108 55.000 0.00 0.00 0.00 5.01
735 4613 0.391927 CGTTTAATCCCCTCGCCACA 60.392 55.000 0.00 0.00 0.00 4.17
736 4614 1.379527 GTTTAATCCCCTCGCCACAG 58.620 55.000 0.00 0.00 0.00 3.66
737 4615 0.254747 TTTAATCCCCTCGCCACAGG 59.745 55.000 0.00 0.00 0.00 4.00
743 4621 2.124570 CCTCGCCACAGGGATTGG 60.125 66.667 0.00 0.00 35.59 3.16
744 4622 2.669133 CCTCGCCACAGGGATTGGA 61.669 63.158 0.00 0.00 36.02 3.53
745 4623 1.153289 CTCGCCACAGGGATTGGAG 60.153 63.158 0.00 0.00 36.02 3.86
746 4624 2.124570 CGCCACAGGGATTGGAGG 60.125 66.667 0.00 0.00 36.02 4.30
747 4625 2.276740 GCCACAGGGATTGGAGGG 59.723 66.667 0.00 0.00 36.02 4.30
748 4626 3.010144 CCACAGGGATTGGAGGGG 58.990 66.667 0.00 0.00 36.02 4.79
749 4627 1.619363 CCACAGGGATTGGAGGGGA 60.619 63.158 0.00 0.00 36.02 4.81
750 4628 0.995675 CCACAGGGATTGGAGGGGAT 60.996 60.000 0.00 0.00 36.02 3.85
751 4629 0.929244 CACAGGGATTGGAGGGGATT 59.071 55.000 0.00 0.00 0.00 3.01
752 4630 0.929244 ACAGGGATTGGAGGGGATTG 59.071 55.000 0.00 0.00 0.00 2.67
753 4631 0.186873 CAGGGATTGGAGGGGATTGG 59.813 60.000 0.00 0.00 0.00 3.16
754 4632 0.047802 AGGGATTGGAGGGGATTGGA 59.952 55.000 0.00 0.00 0.00 3.53
755 4633 0.480252 GGGATTGGAGGGGATTGGAG 59.520 60.000 0.00 0.00 0.00 3.86
756 4634 1.522900 GGATTGGAGGGGATTGGAGA 58.477 55.000 0.00 0.00 0.00 3.71
757 4635 1.423161 GGATTGGAGGGGATTGGAGAG 59.577 57.143 0.00 0.00 0.00 3.20
758 4636 1.423161 GATTGGAGGGGATTGGAGAGG 59.577 57.143 0.00 0.00 0.00 3.69
759 4637 0.121197 TTGGAGGGGATTGGAGAGGT 59.879 55.000 0.00 0.00 0.00 3.85
760 4638 0.121197 TGGAGGGGATTGGAGAGGTT 59.879 55.000 0.00 0.00 0.00 3.50
761 4639 1.299939 GGAGGGGATTGGAGAGGTTT 58.700 55.000 0.00 0.00 0.00 3.27
762 4640 1.064389 GGAGGGGATTGGAGAGGTTTG 60.064 57.143 0.00 0.00 0.00 2.93
763 4641 1.916181 GAGGGGATTGGAGAGGTTTGA 59.084 52.381 0.00 0.00 0.00 2.69
764 4642 1.636003 AGGGGATTGGAGAGGTTTGAC 59.364 52.381 0.00 0.00 0.00 3.18
765 4643 1.341089 GGGGATTGGAGAGGTTTGACC 60.341 57.143 0.00 0.00 38.99 4.02
766 4644 1.354368 GGGATTGGAGAGGTTTGACCA 59.646 52.381 0.00 0.00 41.95 4.02
767 4645 2.619074 GGGATTGGAGAGGTTTGACCAG 60.619 54.545 0.00 0.00 41.95 4.00
768 4646 2.619074 GGATTGGAGAGGTTTGACCAGG 60.619 54.545 0.00 0.00 41.95 4.45
769 4647 1.814429 TTGGAGAGGTTTGACCAGGA 58.186 50.000 0.00 0.00 41.95 3.86
770 4648 2.044793 TGGAGAGGTTTGACCAGGAT 57.955 50.000 0.00 0.00 41.95 3.24
771 4649 2.348472 TGGAGAGGTTTGACCAGGATT 58.652 47.619 0.00 0.00 41.95 3.01
772 4650 2.716424 TGGAGAGGTTTGACCAGGATTT 59.284 45.455 0.00 0.00 41.95 2.17
773 4651 3.140144 TGGAGAGGTTTGACCAGGATTTT 59.860 43.478 0.00 0.00 41.95 1.82
774 4652 3.507622 GGAGAGGTTTGACCAGGATTTTG 59.492 47.826 0.00 0.00 41.95 2.44
775 4653 4.398319 GAGAGGTTTGACCAGGATTTTGA 58.602 43.478 0.00 0.00 41.95 2.69
776 4654 4.145052 AGAGGTTTGACCAGGATTTTGAC 58.855 43.478 0.00 0.00 41.95 3.18
777 4655 4.141158 AGAGGTTTGACCAGGATTTTGACT 60.141 41.667 0.00 0.00 41.95 3.41
778 4656 4.546674 AGGTTTGACCAGGATTTTGACTT 58.453 39.130 0.00 0.00 41.95 3.01
779 4657 4.342092 AGGTTTGACCAGGATTTTGACTTG 59.658 41.667 0.00 0.00 41.95 3.16
780 4658 4.051237 GTTTGACCAGGATTTTGACTTGC 58.949 43.478 0.00 0.00 0.00 4.01
781 4659 2.942804 TGACCAGGATTTTGACTTGCA 58.057 42.857 0.00 0.00 0.00 4.08
782 4660 3.295093 TGACCAGGATTTTGACTTGCAA 58.705 40.909 0.00 0.00 33.88 4.08
783 4661 3.318839 TGACCAGGATTTTGACTTGCAAG 59.681 43.478 24.84 24.84 37.87 4.01
784 4662 2.629617 ACCAGGATTTTGACTTGCAAGG 59.370 45.455 29.18 11.04 37.87 3.61
785 4663 2.028748 CCAGGATTTTGACTTGCAAGGG 60.029 50.000 29.18 13.19 37.87 3.95
786 4664 2.892852 CAGGATTTTGACTTGCAAGGGA 59.107 45.455 29.18 13.09 37.87 4.20
787 4665 3.512724 CAGGATTTTGACTTGCAAGGGAT 59.487 43.478 29.18 14.92 37.87 3.85
788 4666 4.020839 CAGGATTTTGACTTGCAAGGGATT 60.021 41.667 29.18 9.27 37.87 3.01
789 4667 4.594491 AGGATTTTGACTTGCAAGGGATTT 59.406 37.500 29.18 8.87 37.87 2.17
790 4668 5.779771 AGGATTTTGACTTGCAAGGGATTTA 59.220 36.000 29.18 11.01 37.87 1.40
791 4669 6.269769 AGGATTTTGACTTGCAAGGGATTTAA 59.730 34.615 29.18 15.31 37.87 1.52
792 4670 7.038088 AGGATTTTGACTTGCAAGGGATTTAAT 60.038 33.333 29.18 18.73 37.87 1.40
793 4671 7.278646 GGATTTTGACTTGCAAGGGATTTAATC 59.721 37.037 29.18 23.91 37.87 1.75
794 4672 6.036577 TTTGACTTGCAAGGGATTTAATCC 57.963 37.500 29.18 15.22 39.39 3.01
805 4683 3.779444 GGATTTAATCCCCTCCAATCCC 58.221 50.000 12.74 0.00 43.88 3.85
806 4684 3.402708 GGATTTAATCCCCTCCAATCCCT 59.597 47.826 12.74 0.00 43.88 4.20
807 4685 4.140686 GGATTTAATCCCCTCCAATCCCTT 60.141 45.833 12.74 0.00 43.88 3.95
808 4686 4.984642 TTTAATCCCCTCCAATCCCTTT 57.015 40.909 0.00 0.00 0.00 3.11
809 4687 4.536295 TTAATCCCCTCCAATCCCTTTC 57.464 45.455 0.00 0.00 0.00 2.62
810 4688 2.000290 ATCCCCTCCAATCCCTTTCA 58.000 50.000 0.00 0.00 0.00 2.69
811 4689 1.766951 TCCCCTCCAATCCCTTTCAA 58.233 50.000 0.00 0.00 0.00 2.69
812 4690 2.077803 TCCCCTCCAATCCCTTTCAAA 58.922 47.619 0.00 0.00 0.00 2.69
813 4691 2.179427 CCCCTCCAATCCCTTTCAAAC 58.821 52.381 0.00 0.00 0.00 2.93
814 4692 2.179427 CCCTCCAATCCCTTTCAAACC 58.821 52.381 0.00 0.00 0.00 3.27
815 4693 2.225369 CCCTCCAATCCCTTTCAAACCT 60.225 50.000 0.00 0.00 0.00 3.50
816 4694 3.092301 CCTCCAATCCCTTTCAAACCTC 58.908 50.000 0.00 0.00 0.00 3.85
817 4695 3.245407 CCTCCAATCCCTTTCAAACCTCT 60.245 47.826 0.00 0.00 0.00 3.69
818 4696 4.013050 CTCCAATCCCTTTCAAACCTCTC 58.987 47.826 0.00 0.00 0.00 3.20
819 4697 3.092301 CCAATCCCTTTCAAACCTCTCC 58.908 50.000 0.00 0.00 0.00 3.71
820 4698 3.500289 CCAATCCCTTTCAAACCTCTCCA 60.500 47.826 0.00 0.00 0.00 3.86
821 4699 4.151883 CAATCCCTTTCAAACCTCTCCAA 58.848 43.478 0.00 0.00 0.00 3.53
822 4700 3.963476 TCCCTTTCAAACCTCTCCAAA 57.037 42.857 0.00 0.00 0.00 3.28
823 4701 3.562182 TCCCTTTCAAACCTCTCCAAAC 58.438 45.455 0.00 0.00 0.00 2.93
824 4702 2.628178 CCCTTTCAAACCTCTCCAAACC 59.372 50.000 0.00 0.00 0.00 3.27
825 4703 2.628178 CCTTTCAAACCTCTCCAAACCC 59.372 50.000 0.00 0.00 0.00 4.11
826 4704 3.566351 CTTTCAAACCTCTCCAAACCCT 58.434 45.455 0.00 0.00 0.00 4.34
827 4705 2.656947 TCAAACCTCTCCAAACCCTG 57.343 50.000 0.00 0.00 0.00 4.45
828 4706 0.961753 CAAACCTCTCCAAACCCTGC 59.038 55.000 0.00 0.00 0.00 4.85
829 4707 0.178961 AAACCTCTCCAAACCCTGCC 60.179 55.000 0.00 0.00 0.00 4.85
830 4708 2.081585 AACCTCTCCAAACCCTGCCC 62.082 60.000 0.00 0.00 0.00 5.36
831 4709 2.538141 CCTCTCCAAACCCTGCCCA 61.538 63.158 0.00 0.00 0.00 5.36
832 4710 1.460255 CTCTCCAAACCCTGCCCAA 59.540 57.895 0.00 0.00 0.00 4.12
833 4711 0.895559 CTCTCCAAACCCTGCCCAAC 60.896 60.000 0.00 0.00 0.00 3.77
834 4712 1.908299 CTCCAAACCCTGCCCAACC 60.908 63.158 0.00 0.00 0.00 3.77
835 4713 3.302344 CCAAACCCTGCCCAACCG 61.302 66.667 0.00 0.00 0.00 4.44
836 4714 2.203422 CAAACCCTGCCCAACCGA 60.203 61.111 0.00 0.00 0.00 4.69
837 4715 1.830408 CAAACCCTGCCCAACCGAA 60.830 57.895 0.00 0.00 0.00 4.30
838 4716 1.830847 AAACCCTGCCCAACCGAAC 60.831 57.895 0.00 0.00 0.00 3.95
839 4717 4.636435 ACCCTGCCCAACCGAACG 62.636 66.667 0.00 0.00 0.00 3.95
840 4718 4.323477 CCCTGCCCAACCGAACGA 62.323 66.667 0.00 0.00 0.00 3.85
841 4719 2.742372 CCTGCCCAACCGAACGAG 60.742 66.667 0.00 0.00 0.00 4.18
867 4746 7.040409 GGCCTAAGAGACTTTTTCATCTTTTCA 60.040 37.037 0.00 0.00 34.08 2.69
1656 5574 4.443266 GCGTCGCTGGAGGAGCTT 62.443 66.667 10.68 0.00 46.64 3.74
1826 5754 1.003545 CTCGTATGCCAAGCCGATTTG 60.004 52.381 0.00 0.00 0.00 2.32
1946 5886 2.965831 TGTCCCTACACATATCTCCTGC 59.034 50.000 0.00 0.00 0.00 4.85
1966 5906 5.337894 CCTGCCCAAGTATATATGTCTCCTG 60.338 48.000 0.00 0.00 0.00 3.86
2004 6000 4.933483 GCAATTGTCGGCGAAACA 57.067 50.000 12.92 3.72 0.00 2.83
2005 6001 3.399879 GCAATTGTCGGCGAAACAT 57.600 47.368 12.92 0.26 0.00 2.71
2006 6002 0.984109 GCAATTGTCGGCGAAACATG 59.016 50.000 12.92 9.13 0.00 3.21
2007 6003 1.400888 GCAATTGTCGGCGAAACATGA 60.401 47.619 12.92 0.00 0.00 3.07
2008 6004 2.731968 GCAATTGTCGGCGAAACATGAT 60.732 45.455 12.92 0.00 0.00 2.45
2009 6005 2.830772 ATTGTCGGCGAAACATGATG 57.169 45.000 12.92 0.00 0.00 3.07
2010 6006 1.518325 TTGTCGGCGAAACATGATGT 58.482 45.000 12.92 0.00 0.00 3.06
2011 6007 1.075542 TGTCGGCGAAACATGATGTC 58.924 50.000 12.92 0.00 0.00 3.06
2012 6008 1.337728 TGTCGGCGAAACATGATGTCT 60.338 47.619 12.92 0.00 0.00 3.41
2013 6009 1.324736 GTCGGCGAAACATGATGTCTC 59.675 52.381 12.92 0.00 0.00 3.36
2014 6010 0.652592 CGGCGAAACATGATGTCTCC 59.347 55.000 0.00 0.00 0.00 3.71
2015 6011 1.017387 GGCGAAACATGATGTCTCCC 58.983 55.000 0.00 0.00 0.00 4.30
2016 6012 1.407437 GGCGAAACATGATGTCTCCCT 60.407 52.381 0.00 0.00 0.00 4.20
2027 6023 6.560304 ACATGATGTCTCCCTAACTTATCCAT 59.440 38.462 0.00 0.00 0.00 3.41
2033 6029 6.386927 TGTCTCCCTAACTTATCCATGATGTT 59.613 38.462 0.00 0.00 0.00 2.71
2036 6032 8.336235 TCTCCCTAACTTATCCATGATGTTTTT 58.664 33.333 0.00 0.00 0.00 1.94
2214 6712 1.228063 CTCCTTGGGATGCATCGGG 60.228 63.158 20.15 17.54 0.00 5.14
2241 6739 2.007608 CAGCCTTACGGAACCTTAAGC 58.992 52.381 10.38 7.22 0.00 3.09
2269 6767 4.384056 CTGCTAAGATCAGGGGTAATGTG 58.616 47.826 0.00 0.00 0.00 3.21
2304 6803 7.452880 TGCTTATGCATTTGGAATATACTCC 57.547 36.000 3.54 0.00 45.31 3.85
2305 6804 6.434028 TGCTTATGCATTTGGAATATACTCCC 59.566 38.462 3.54 0.00 45.31 4.30
2306 6805 6.660949 GCTTATGCATTTGGAATATACTCCCT 59.339 38.462 3.54 0.00 39.41 4.20
2307 6806 7.148171 GCTTATGCATTTGGAATATACTCCCTC 60.148 40.741 3.54 0.00 39.41 4.30
2308 6807 4.985538 TGCATTTGGAATATACTCCCTCC 58.014 43.478 0.00 0.00 34.22 4.30
2309 6808 4.003648 GCATTTGGAATATACTCCCTCCG 58.996 47.826 0.00 0.00 34.22 4.63
2310 6809 4.505039 GCATTTGGAATATACTCCCTCCGT 60.505 45.833 0.00 0.00 34.22 4.69
2311 6810 5.621193 CATTTGGAATATACTCCCTCCGTT 58.379 41.667 0.00 0.00 34.22 4.44
2312 6811 4.950205 TTGGAATATACTCCCTCCGTTC 57.050 45.455 0.00 0.00 34.22 3.95
2313 6812 3.236896 TGGAATATACTCCCTCCGTTCC 58.763 50.000 0.00 0.00 34.22 3.62
2314 6813 3.116862 TGGAATATACTCCCTCCGTTCCT 60.117 47.826 0.00 0.00 35.75 3.36
2315 6814 4.106825 TGGAATATACTCCCTCCGTTCCTA 59.893 45.833 0.00 0.00 35.75 2.94
2316 6815 5.082425 GGAATATACTCCCTCCGTTCCTAA 58.918 45.833 0.00 0.00 32.83 2.69
2317 6816 5.541484 GGAATATACTCCCTCCGTTCCTAAA 59.459 44.000 0.00 0.00 32.83 1.85
2318 6817 6.212993 GGAATATACTCCCTCCGTTCCTAAAT 59.787 42.308 0.00 0.00 32.83 1.40
2319 6818 7.398332 GGAATATACTCCCTCCGTTCCTAAATA 59.602 40.741 0.00 0.00 32.83 1.40
2320 6819 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2323 6822 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2324 6823 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2325 6824 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2326 6825 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2327 6826 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2328 6827 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2329 6828 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2330 6829 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2380 6879 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
2389 6888 6.839124 AGATGCATTTTAAGTGTGGATTCA 57.161 33.333 0.00 0.00 0.00 2.57
2390 6889 7.414222 AGATGCATTTTAAGTGTGGATTCAT 57.586 32.000 0.00 0.00 0.00 2.57
2391 6890 7.844009 AGATGCATTTTAAGTGTGGATTCATT 58.156 30.769 0.00 0.00 0.00 2.57
2392 6891 7.977853 AGATGCATTTTAAGTGTGGATTCATTC 59.022 33.333 0.00 0.00 0.00 2.67
2393 6892 6.990798 TGCATTTTAAGTGTGGATTCATTCA 58.009 32.000 0.00 0.00 0.00 2.57
2394 6893 7.613585 TGCATTTTAAGTGTGGATTCATTCAT 58.386 30.769 0.00 0.00 0.00 2.57
2395 6894 8.095792 TGCATTTTAAGTGTGGATTCATTCATT 58.904 29.630 0.00 0.00 0.00 2.57
2396 6895 8.938906 GCATTTTAAGTGTGGATTCATTCATTT 58.061 29.630 0.00 0.00 0.00 2.32
2402 6901 7.396540 AGTGTGGATTCATTCATTTTACTCC 57.603 36.000 0.00 0.00 0.00 3.85
2403 6902 6.094048 AGTGTGGATTCATTCATTTTACTCCG 59.906 38.462 0.00 0.00 0.00 4.63
2404 6903 5.943416 TGTGGATTCATTCATTTTACTCCGT 59.057 36.000 0.00 0.00 0.00 4.69
2405 6904 7.065324 GTGTGGATTCATTCATTTTACTCCGTA 59.935 37.037 0.00 0.00 0.00 4.02
2406 6905 7.773224 TGTGGATTCATTCATTTTACTCCGTAT 59.227 33.333 0.00 0.00 0.00 3.06
2407 6906 8.070171 GTGGATTCATTCATTTTACTCCGTATG 58.930 37.037 0.00 0.00 0.00 2.39
2408 6907 7.773224 TGGATTCATTCATTTTACTCCGTATGT 59.227 33.333 0.00 0.00 0.00 2.29
2409 6908 9.268268 GGATTCATTCATTTTACTCCGTATGTA 57.732 33.333 0.00 0.00 0.00 2.29
2411 6910 9.832445 ATTCATTCATTTTACTCCGTATGTAGT 57.168 29.630 0.00 0.00 0.00 2.73
2412 6911 8.867112 TCATTCATTTTACTCCGTATGTAGTC 57.133 34.615 0.00 0.00 0.00 2.59
2413 6912 7.924412 TCATTCATTTTACTCCGTATGTAGTCC 59.076 37.037 0.00 0.00 0.00 3.85
2414 6913 6.778834 TCATTTTACTCCGTATGTAGTCCA 57.221 37.500 0.00 0.00 0.00 4.02
2415 6914 7.356089 TCATTTTACTCCGTATGTAGTCCAT 57.644 36.000 0.00 0.00 37.58 3.41
2416 6915 7.431249 TCATTTTACTCCGTATGTAGTCCATC 58.569 38.462 0.00 0.00 34.86 3.51
2417 6916 5.779529 TTTACTCCGTATGTAGTCCATCC 57.220 43.478 0.00 0.00 34.86 3.51
2418 6917 3.308035 ACTCCGTATGTAGTCCATCCA 57.692 47.619 0.00 0.00 34.86 3.41
2419 6918 3.223435 ACTCCGTATGTAGTCCATCCAG 58.777 50.000 0.00 0.00 34.86 3.86
2420 6919 3.223435 CTCCGTATGTAGTCCATCCAGT 58.777 50.000 0.00 0.00 34.86 4.00
2421 6920 2.956333 TCCGTATGTAGTCCATCCAGTG 59.044 50.000 0.00 0.00 34.86 3.66
2436 6935 5.982356 CATCCAGTGGAATCTCTACAAAGA 58.018 41.667 17.71 0.00 34.34 2.52
2437 6936 5.407407 TCCAGTGGAATCTCTACAAAGAC 57.593 43.478 10.20 0.00 29.47 3.01
2438 6937 5.087323 TCCAGTGGAATCTCTACAAAGACT 58.913 41.667 10.20 0.00 29.47 3.24
2439 6938 5.544176 TCCAGTGGAATCTCTACAAAGACTT 59.456 40.000 10.20 0.00 29.47 3.01
2440 6939 6.724441 TCCAGTGGAATCTCTACAAAGACTTA 59.276 38.462 10.20 0.00 29.47 2.24
2441 6940 6.814146 CCAGTGGAATCTCTACAAAGACTTAC 59.186 42.308 1.68 0.00 29.47 2.34
2442 6941 7.378966 CAGTGGAATCTCTACAAAGACTTACA 58.621 38.462 0.00 0.00 29.47 2.41
2443 6942 8.037758 CAGTGGAATCTCTACAAAGACTTACAT 58.962 37.037 0.00 0.00 29.47 2.29
2444 6943 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
2445 6944 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
2451 6950 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
2452 6951 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
2453 6952 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
2454 6953 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
2455 6954 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
2456 6955 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2457 6956 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2458 6957 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2459 6958 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2460 6959 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
2461 6960 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
2462 6961 4.296056 ACATTTAGGAACGGAGGGAGTAT 58.704 43.478 0.00 0.00 0.00 2.12
2463 6962 5.461327 ACATTTAGGAACGGAGGGAGTATA 58.539 41.667 0.00 0.00 0.00 1.47
2464 6963 6.082707 ACATTTAGGAACGGAGGGAGTATAT 58.917 40.000 0.00 0.00 0.00 0.86
2530 7053 4.431416 TGAACTAATGTCCCAACAGTGT 57.569 40.909 0.00 0.00 39.20 3.55
2531 7054 4.787551 TGAACTAATGTCCCAACAGTGTT 58.212 39.130 1.64 1.64 39.20 3.32
2532 7055 4.819630 TGAACTAATGTCCCAACAGTGTTC 59.180 41.667 5.27 0.00 39.34 3.18
2533 7056 4.431416 ACTAATGTCCCAACAGTGTTCA 57.569 40.909 5.27 1.26 39.20 3.18
2675 7198 2.513753 ACATGGAAATTGAAGGCGTCA 58.486 42.857 0.00 0.00 0.00 4.35
2944 7553 6.483640 GTCTAAACTCACCATTTAGCCCTATG 59.516 42.308 0.00 0.00 38.82 2.23
3572 12120 4.327680 GCAGACCAACTCCTATCTGTTTT 58.672 43.478 0.00 0.00 40.61 2.43
3936 13094 6.801575 TGAATAACCCAGTGTTGAAGAAAAC 58.198 36.000 0.00 0.00 37.83 2.43
4111 13277 1.072331 ACACTCCGCTGGTCTGAATTT 59.928 47.619 0.00 0.00 0.00 1.82
4192 13358 8.742777 AGTTTCACATGATATTGCAATAGTTGT 58.257 29.630 22.76 20.37 0.00 3.32
4193 13359 8.800972 GTTTCACATGATATTGCAATAGTTGTG 58.199 33.333 30.31 30.31 34.12 3.33
4386 13555 5.474532 TGAAGGAGGTGACAATTCATCAAAG 59.525 40.000 0.00 0.00 34.98 2.77
4421 13590 5.019470 AGGAGTTCAAGATGAAAATTCCCC 58.981 41.667 12.29 0.00 38.22 4.81
4466 13635 2.752354 CTCCATATCCTCGCTCTACTGG 59.248 54.545 0.00 0.00 0.00 4.00
4485 13654 2.026014 CGTGCTTGCACCAACACC 59.974 61.111 18.48 0.00 0.00 4.16
4497 13666 0.790207 CCAACACCGACTTCACATCG 59.210 55.000 0.00 0.00 39.33 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 3896 6.279513 ACAAAGGCCGAAATATTTGATTGA 57.720 33.333 17.12 0.00 36.41 2.57
136 3956 4.428615 TTTATACCAAAAAGAGGTGCGC 57.571 40.909 0.00 0.00 40.26 6.09
416 4252 1.901085 GGCTCAGTCGACTCCCAAT 59.099 57.895 16.96 0.00 0.00 3.16
516 4375 6.737254 ATTTGAACGATAATGACCGAAACT 57.263 33.333 0.00 0.00 0.00 2.66
517 4376 7.252865 CGAAATTTGAACGATAATGACCGAAAC 60.253 37.037 0.00 0.00 0.00 2.78
518 4377 6.739100 CGAAATTTGAACGATAATGACCGAAA 59.261 34.615 0.00 0.00 0.00 3.46
519 4378 6.244999 CGAAATTTGAACGATAATGACCGAA 58.755 36.000 0.00 0.00 0.00 4.30
520 4379 5.220510 CCGAAATTTGAACGATAATGACCGA 60.221 40.000 0.00 0.00 0.00 4.69
521 4380 4.961551 CCGAAATTTGAACGATAATGACCG 59.038 41.667 0.00 0.00 0.00 4.79
522 4381 4.733405 GCCGAAATTTGAACGATAATGACC 59.267 41.667 0.00 0.00 0.00 4.02
523 4382 4.733405 GGCCGAAATTTGAACGATAATGAC 59.267 41.667 0.00 0.00 0.00 3.06
524 4383 4.396478 TGGCCGAAATTTGAACGATAATGA 59.604 37.500 0.00 0.00 0.00 2.57
525 4384 4.499040 GTGGCCGAAATTTGAACGATAATG 59.501 41.667 0.00 0.00 0.00 1.90
526 4385 4.398044 AGTGGCCGAAATTTGAACGATAAT 59.602 37.500 0.00 0.00 0.00 1.28
527 4386 3.754323 AGTGGCCGAAATTTGAACGATAA 59.246 39.130 0.00 0.00 0.00 1.75
528 4387 3.340034 AGTGGCCGAAATTTGAACGATA 58.660 40.909 0.00 0.00 0.00 2.92
529 4388 2.159382 AGTGGCCGAAATTTGAACGAT 58.841 42.857 0.00 0.00 0.00 3.73
530 4389 1.600023 AGTGGCCGAAATTTGAACGA 58.400 45.000 0.00 0.00 0.00 3.85
531 4390 2.415697 AAGTGGCCGAAATTTGAACG 57.584 45.000 0.00 0.00 0.00 3.95
532 4391 3.181575 CGAAAAGTGGCCGAAATTTGAAC 59.818 43.478 0.00 0.00 0.00 3.18
533 4392 3.066900 TCGAAAAGTGGCCGAAATTTGAA 59.933 39.130 0.00 0.00 0.00 2.69
534 4393 2.619177 TCGAAAAGTGGCCGAAATTTGA 59.381 40.909 0.00 0.00 0.00 2.69
535 4394 3.006659 TCGAAAAGTGGCCGAAATTTG 57.993 42.857 0.00 0.00 0.00 2.32
536 4395 3.366985 GGATCGAAAAGTGGCCGAAATTT 60.367 43.478 0.00 0.00 35.87 1.82
687 4565 3.614092 CCTTAGGCAAAGAATGAGCTGA 58.386 45.455 0.00 0.00 37.38 4.26
702 4580 2.773993 TAAACGAACAGGGCCTTAGG 57.226 50.000 1.32 0.00 0.00 2.69
703 4581 3.626217 GGATTAAACGAACAGGGCCTTAG 59.374 47.826 1.32 0.00 0.00 2.18
704 4582 3.613030 GGATTAAACGAACAGGGCCTTA 58.387 45.455 1.32 0.00 0.00 2.69
705 4583 2.443416 GGATTAAACGAACAGGGCCTT 58.557 47.619 1.32 0.00 0.00 4.35
706 4584 1.340697 GGGATTAAACGAACAGGGCCT 60.341 52.381 0.00 0.00 0.00 5.19
707 4585 1.100510 GGGATTAAACGAACAGGGCC 58.899 55.000 0.00 0.00 0.00 5.80
708 4586 1.100510 GGGGATTAAACGAACAGGGC 58.899 55.000 0.00 0.00 0.00 5.19
709 4587 2.640184 GAGGGGATTAAACGAACAGGG 58.360 52.381 0.00 0.00 0.00 4.45
710 4588 2.277084 CGAGGGGATTAAACGAACAGG 58.723 52.381 0.00 0.00 0.00 4.00
711 4589 1.664151 GCGAGGGGATTAAACGAACAG 59.336 52.381 0.00 0.00 0.00 3.16
712 4590 1.676615 GGCGAGGGGATTAAACGAACA 60.677 52.381 0.00 0.00 0.00 3.18
713 4591 1.012086 GGCGAGGGGATTAAACGAAC 58.988 55.000 0.00 0.00 0.00 3.95
714 4592 0.614294 TGGCGAGGGGATTAAACGAA 59.386 50.000 0.00 0.00 0.00 3.85
715 4593 0.108041 GTGGCGAGGGGATTAAACGA 60.108 55.000 0.00 0.00 0.00 3.85
716 4594 0.391927 TGTGGCGAGGGGATTAAACG 60.392 55.000 0.00 0.00 0.00 3.60
717 4595 1.379527 CTGTGGCGAGGGGATTAAAC 58.620 55.000 0.00 0.00 0.00 2.01
718 4596 0.254747 CCTGTGGCGAGGGGATTAAA 59.745 55.000 0.00 0.00 0.00 1.52
719 4597 1.912220 CCTGTGGCGAGGGGATTAA 59.088 57.895 0.00 0.00 0.00 1.40
720 4598 3.642078 CCTGTGGCGAGGGGATTA 58.358 61.111 0.00 0.00 0.00 1.75
726 4604 2.124570 CCAATCCCTGTGGCGAGG 60.125 66.667 0.00 0.00 0.00 4.63
727 4605 1.153289 CTCCAATCCCTGTGGCGAG 60.153 63.158 0.00 0.00 35.99 5.03
728 4606 2.669133 CCTCCAATCCCTGTGGCGA 61.669 63.158 0.00 0.00 35.99 5.54
729 4607 2.124570 CCTCCAATCCCTGTGGCG 60.125 66.667 0.00 0.00 35.99 5.69
730 4608 2.276740 CCCTCCAATCCCTGTGGC 59.723 66.667 0.00 0.00 35.99 5.01
731 4609 0.995675 ATCCCCTCCAATCCCTGTGG 60.996 60.000 0.00 0.00 37.51 4.17
732 4610 0.929244 AATCCCCTCCAATCCCTGTG 59.071 55.000 0.00 0.00 0.00 3.66
733 4611 0.929244 CAATCCCCTCCAATCCCTGT 59.071 55.000 0.00 0.00 0.00 4.00
734 4612 0.186873 CCAATCCCCTCCAATCCCTG 59.813 60.000 0.00 0.00 0.00 4.45
735 4613 0.047802 TCCAATCCCCTCCAATCCCT 59.952 55.000 0.00 0.00 0.00 4.20
736 4614 0.480252 CTCCAATCCCCTCCAATCCC 59.520 60.000 0.00 0.00 0.00 3.85
737 4615 1.423161 CTCTCCAATCCCCTCCAATCC 59.577 57.143 0.00 0.00 0.00 3.01
738 4616 1.423161 CCTCTCCAATCCCCTCCAATC 59.577 57.143 0.00 0.00 0.00 2.67
739 4617 1.275238 ACCTCTCCAATCCCCTCCAAT 60.275 52.381 0.00 0.00 0.00 3.16
740 4618 0.121197 ACCTCTCCAATCCCCTCCAA 59.879 55.000 0.00 0.00 0.00 3.53
741 4619 0.121197 AACCTCTCCAATCCCCTCCA 59.879 55.000 0.00 0.00 0.00 3.86
742 4620 1.064389 CAAACCTCTCCAATCCCCTCC 60.064 57.143 0.00 0.00 0.00 4.30
743 4621 1.916181 TCAAACCTCTCCAATCCCCTC 59.084 52.381 0.00 0.00 0.00 4.30
744 4622 1.636003 GTCAAACCTCTCCAATCCCCT 59.364 52.381 0.00 0.00 0.00 4.79
745 4623 1.341089 GGTCAAACCTCTCCAATCCCC 60.341 57.143 0.00 0.00 34.73 4.81
746 4624 1.354368 TGGTCAAACCTCTCCAATCCC 59.646 52.381 0.00 0.00 39.58 3.85
747 4625 2.619074 CCTGGTCAAACCTCTCCAATCC 60.619 54.545 0.00 0.00 39.58 3.01
748 4626 2.305927 TCCTGGTCAAACCTCTCCAATC 59.694 50.000 0.00 0.00 39.58 2.67
749 4627 2.348472 TCCTGGTCAAACCTCTCCAAT 58.652 47.619 0.00 0.00 39.58 3.16
750 4628 1.814429 TCCTGGTCAAACCTCTCCAA 58.186 50.000 0.00 0.00 39.58 3.53
751 4629 2.044793 ATCCTGGTCAAACCTCTCCA 57.955 50.000 0.00 0.00 39.58 3.86
752 4630 3.441500 AAATCCTGGTCAAACCTCTCC 57.558 47.619 0.00 0.00 39.58 3.71
753 4631 4.216472 GTCAAAATCCTGGTCAAACCTCTC 59.784 45.833 0.00 0.00 39.58 3.20
754 4632 4.141158 AGTCAAAATCCTGGTCAAACCTCT 60.141 41.667 0.00 0.00 39.58 3.69
755 4633 4.145052 AGTCAAAATCCTGGTCAAACCTC 58.855 43.478 0.00 0.00 39.58 3.85
756 4634 4.184649 AGTCAAAATCCTGGTCAAACCT 57.815 40.909 0.00 0.00 39.58 3.50
757 4635 4.620982 CAAGTCAAAATCCTGGTCAAACC 58.379 43.478 0.00 0.00 39.22 3.27
758 4636 4.051237 GCAAGTCAAAATCCTGGTCAAAC 58.949 43.478 0.00 0.00 0.00 2.93
759 4637 3.703556 TGCAAGTCAAAATCCTGGTCAAA 59.296 39.130 0.00 0.00 0.00 2.69
760 4638 3.295093 TGCAAGTCAAAATCCTGGTCAA 58.705 40.909 0.00 0.00 0.00 3.18
761 4639 2.942804 TGCAAGTCAAAATCCTGGTCA 58.057 42.857 0.00 0.00 0.00 4.02
762 4640 3.305608 CCTTGCAAGTCAAAATCCTGGTC 60.306 47.826 24.35 0.00 33.65 4.02
763 4641 2.629617 CCTTGCAAGTCAAAATCCTGGT 59.370 45.455 24.35 0.00 33.65 4.00
764 4642 2.028748 CCCTTGCAAGTCAAAATCCTGG 60.029 50.000 24.35 10.71 33.65 4.45
765 4643 2.892852 TCCCTTGCAAGTCAAAATCCTG 59.107 45.455 24.35 5.47 33.65 3.86
766 4644 3.243359 TCCCTTGCAAGTCAAAATCCT 57.757 42.857 24.35 0.00 33.65 3.24
767 4645 4.541973 AATCCCTTGCAAGTCAAAATCC 57.458 40.909 24.35 0.00 33.65 3.01
768 4646 7.278646 GGATTAAATCCCTTGCAAGTCAAAATC 59.721 37.037 24.35 20.70 43.88 2.17
769 4647 7.105588 GGATTAAATCCCTTGCAAGTCAAAAT 58.894 34.615 24.35 14.96 43.88 1.82
770 4648 6.463360 GGATTAAATCCCTTGCAAGTCAAAA 58.537 36.000 24.35 11.23 43.88 2.44
771 4649 6.036577 GGATTAAATCCCTTGCAAGTCAAA 57.963 37.500 24.35 10.27 43.88 2.69
772 4650 5.659440 GGATTAAATCCCTTGCAAGTCAA 57.341 39.130 24.35 10.08 43.88 3.18
785 4663 4.749048 AGGGATTGGAGGGGATTAAATC 57.251 45.455 0.00 0.00 0.00 2.17
786 4664 5.042676 TGAAAGGGATTGGAGGGGATTAAAT 60.043 40.000 0.00 0.00 0.00 1.40
787 4665 4.296313 TGAAAGGGATTGGAGGGGATTAAA 59.704 41.667 0.00 0.00 0.00 1.52
788 4666 3.861695 TGAAAGGGATTGGAGGGGATTAA 59.138 43.478 0.00 0.00 0.00 1.40
789 4667 3.480012 TGAAAGGGATTGGAGGGGATTA 58.520 45.455 0.00 0.00 0.00 1.75
790 4668 2.297044 TGAAAGGGATTGGAGGGGATT 58.703 47.619 0.00 0.00 0.00 3.01
791 4669 2.000290 TGAAAGGGATTGGAGGGGAT 58.000 50.000 0.00 0.00 0.00 3.85
792 4670 1.766951 TTGAAAGGGATTGGAGGGGA 58.233 50.000 0.00 0.00 0.00 4.81
793 4671 2.179427 GTTTGAAAGGGATTGGAGGGG 58.821 52.381 0.00 0.00 0.00 4.79
794 4672 2.179427 GGTTTGAAAGGGATTGGAGGG 58.821 52.381 0.00 0.00 0.00 4.30
795 4673 3.092301 GAGGTTTGAAAGGGATTGGAGG 58.908 50.000 0.00 0.00 0.00 4.30
796 4674 4.013050 GAGAGGTTTGAAAGGGATTGGAG 58.987 47.826 0.00 0.00 0.00 3.86
797 4675 3.245264 GGAGAGGTTTGAAAGGGATTGGA 60.245 47.826 0.00 0.00 0.00 3.53
798 4676 3.092301 GGAGAGGTTTGAAAGGGATTGG 58.908 50.000 0.00 0.00 0.00 3.16
799 4677 3.766545 TGGAGAGGTTTGAAAGGGATTG 58.233 45.455 0.00 0.00 0.00 2.67
800 4678 4.469469 TTGGAGAGGTTTGAAAGGGATT 57.531 40.909 0.00 0.00 0.00 3.01
801 4679 4.152647 GTTTGGAGAGGTTTGAAAGGGAT 58.847 43.478 0.00 0.00 0.00 3.85
802 4680 3.562182 GTTTGGAGAGGTTTGAAAGGGA 58.438 45.455 0.00 0.00 0.00 4.20
803 4681 2.628178 GGTTTGGAGAGGTTTGAAAGGG 59.372 50.000 0.00 0.00 0.00 3.95
804 4682 2.628178 GGGTTTGGAGAGGTTTGAAAGG 59.372 50.000 0.00 0.00 0.00 3.11
805 4683 3.319122 CAGGGTTTGGAGAGGTTTGAAAG 59.681 47.826 0.00 0.00 0.00 2.62
806 4684 3.295973 CAGGGTTTGGAGAGGTTTGAAA 58.704 45.455 0.00 0.00 0.00 2.69
807 4685 2.944129 CAGGGTTTGGAGAGGTTTGAA 58.056 47.619 0.00 0.00 0.00 2.69
808 4686 1.478654 GCAGGGTTTGGAGAGGTTTGA 60.479 52.381 0.00 0.00 0.00 2.69
809 4687 0.961753 GCAGGGTTTGGAGAGGTTTG 59.038 55.000 0.00 0.00 0.00 2.93
810 4688 0.178961 GGCAGGGTTTGGAGAGGTTT 60.179 55.000 0.00 0.00 0.00 3.27
811 4689 1.460699 GGCAGGGTTTGGAGAGGTT 59.539 57.895 0.00 0.00 0.00 3.50
812 4690 2.539081 GGGCAGGGTTTGGAGAGGT 61.539 63.158 0.00 0.00 0.00 3.85
813 4691 2.080336 TTGGGCAGGGTTTGGAGAGG 62.080 60.000 0.00 0.00 0.00 3.69
814 4692 0.895559 GTTGGGCAGGGTTTGGAGAG 60.896 60.000 0.00 0.00 0.00 3.20
815 4693 1.152830 GTTGGGCAGGGTTTGGAGA 59.847 57.895 0.00 0.00 0.00 3.71
816 4694 1.908299 GGTTGGGCAGGGTTTGGAG 60.908 63.158 0.00 0.00 0.00 3.86
817 4695 2.200092 GGTTGGGCAGGGTTTGGA 59.800 61.111 0.00 0.00 0.00 3.53
818 4696 3.302344 CGGTTGGGCAGGGTTTGG 61.302 66.667 0.00 0.00 0.00 3.28
819 4697 1.830408 TTCGGTTGGGCAGGGTTTG 60.830 57.895 0.00 0.00 0.00 2.93
820 4698 1.830847 GTTCGGTTGGGCAGGGTTT 60.831 57.895 0.00 0.00 0.00 3.27
821 4699 2.203437 GTTCGGTTGGGCAGGGTT 60.203 61.111 0.00 0.00 0.00 4.11
822 4700 4.636435 CGTTCGGTTGGGCAGGGT 62.636 66.667 0.00 0.00 0.00 4.34
823 4701 4.323477 TCGTTCGGTTGGGCAGGG 62.323 66.667 0.00 0.00 0.00 4.45
824 4702 2.742372 CTCGTTCGGTTGGGCAGG 60.742 66.667 0.00 0.00 0.00 4.85
825 4703 2.742372 CCTCGTTCGGTTGGGCAG 60.742 66.667 0.00 0.00 0.00 4.85
828 4706 2.175035 TTAGGCCTCGTTCGGTTGGG 62.175 60.000 9.68 0.00 0.00 4.12
829 4707 0.739813 CTTAGGCCTCGTTCGGTTGG 60.740 60.000 9.68 0.00 0.00 3.77
830 4708 0.245539 TCTTAGGCCTCGTTCGGTTG 59.754 55.000 9.68 0.00 0.00 3.77
831 4709 0.531200 CTCTTAGGCCTCGTTCGGTT 59.469 55.000 9.68 0.00 0.00 4.44
832 4710 0.323178 TCTCTTAGGCCTCGTTCGGT 60.323 55.000 9.68 0.00 0.00 4.69
833 4711 0.100861 GTCTCTTAGGCCTCGTTCGG 59.899 60.000 9.68 0.00 0.00 4.30
834 4712 1.096416 AGTCTCTTAGGCCTCGTTCG 58.904 55.000 9.68 0.00 0.00 3.95
835 4713 3.596310 AAAGTCTCTTAGGCCTCGTTC 57.404 47.619 9.68 0.00 0.00 3.95
836 4714 4.202326 TGAAAAAGTCTCTTAGGCCTCGTT 60.202 41.667 9.68 0.00 0.00 3.85
837 4715 3.323979 TGAAAAAGTCTCTTAGGCCTCGT 59.676 43.478 9.68 0.00 0.00 4.18
838 4716 3.926616 TGAAAAAGTCTCTTAGGCCTCG 58.073 45.455 9.68 0.97 0.00 4.63
839 4717 5.739959 AGATGAAAAAGTCTCTTAGGCCTC 58.260 41.667 9.68 0.00 0.00 4.70
840 4718 5.770685 AGATGAAAAAGTCTCTTAGGCCT 57.229 39.130 11.78 11.78 0.00 5.19
841 4719 6.825944 AAAGATGAAAAAGTCTCTTAGGCC 57.174 37.500 0.00 0.00 0.00 5.19
987 4868 2.275418 CCCATGGAAAGACCCCGG 59.725 66.667 15.22 0.00 38.00 5.73
1036 4944 1.617947 GGGAGGACGCTGATGAGGTT 61.618 60.000 0.00 0.00 0.00 3.50
1671 5589 1.952102 TACGGCCGGTCCATCTGTTC 61.952 60.000 31.76 0.00 34.01 3.18
1826 5754 3.373565 CCCAAAGACCAAGGCCGC 61.374 66.667 0.00 0.00 0.00 6.53
1946 5886 6.019748 AGGACAGGAGACATATATACTTGGG 58.980 44.000 0.00 0.00 0.00 4.12
1966 5906 3.729163 GCGCTAAATTGAAGAAGCAGGAC 60.729 47.826 0.00 0.00 34.60 3.85
2004 6000 6.789457 TCATGGATAAGTTAGGGAGACATCAT 59.211 38.462 0.00 0.00 0.00 2.45
2005 6001 6.143206 TCATGGATAAGTTAGGGAGACATCA 58.857 40.000 0.00 0.00 0.00 3.07
2006 6002 6.672266 TCATGGATAAGTTAGGGAGACATC 57.328 41.667 0.00 0.00 0.00 3.06
2007 6003 6.560304 ACATCATGGATAAGTTAGGGAGACAT 59.440 38.462 0.00 0.00 0.00 3.06
2008 6004 5.905331 ACATCATGGATAAGTTAGGGAGACA 59.095 40.000 0.00 0.00 0.00 3.41
2009 6005 6.426646 ACATCATGGATAAGTTAGGGAGAC 57.573 41.667 0.00 0.00 0.00 3.36
2010 6006 7.451731 AAACATCATGGATAAGTTAGGGAGA 57.548 36.000 0.00 0.00 0.00 3.71
2011 6007 8.525290 AAAAACATCATGGATAAGTTAGGGAG 57.475 34.615 0.00 0.00 0.00 4.30
2260 6758 2.607635 CACAGCATACGACACATTACCC 59.392 50.000 0.00 0.00 0.00 3.69
2269 6767 2.652662 GCATAAGCACAGCATACGAC 57.347 50.000 0.00 0.00 41.58 4.34
2301 6800 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2302 6801 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2303 6802 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2304 6803 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2305 6804 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2354 6853 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
2363 6862 9.625747 TGAATCCACACTTAAAATGCATCTATA 57.374 29.630 0.00 0.00 0.00 1.31
2364 6863 8.523915 TGAATCCACACTTAAAATGCATCTAT 57.476 30.769 0.00 0.00 0.00 1.98
2365 6864 7.936496 TGAATCCACACTTAAAATGCATCTA 57.064 32.000 0.00 0.00 0.00 1.98
2366 6865 6.839124 TGAATCCACACTTAAAATGCATCT 57.161 33.333 0.00 0.00 0.00 2.90
2367 6866 7.760794 TGAATGAATCCACACTTAAAATGCATC 59.239 33.333 0.00 0.00 0.00 3.91
2368 6867 7.613585 TGAATGAATCCACACTTAAAATGCAT 58.386 30.769 0.00 0.00 0.00 3.96
2369 6868 6.990798 TGAATGAATCCACACTTAAAATGCA 58.009 32.000 0.00 0.00 0.00 3.96
2370 6869 8.483307 AATGAATGAATCCACACTTAAAATGC 57.517 30.769 0.00 0.00 0.00 3.56
2376 6875 8.956426 GGAGTAAAATGAATGAATCCACACTTA 58.044 33.333 0.00 0.00 0.00 2.24
2377 6876 7.362056 CGGAGTAAAATGAATGAATCCACACTT 60.362 37.037 0.00 0.00 0.00 3.16
2378 6877 6.094048 CGGAGTAAAATGAATGAATCCACACT 59.906 38.462 0.00 0.00 0.00 3.55
2379 6878 6.128007 ACGGAGTAAAATGAATGAATCCACAC 60.128 38.462 0.00 0.00 41.94 3.82
2380 6879 5.943416 ACGGAGTAAAATGAATGAATCCACA 59.057 36.000 0.00 0.00 41.94 4.17
2381 6880 6.436843 ACGGAGTAAAATGAATGAATCCAC 57.563 37.500 0.00 0.00 41.94 4.02
2398 6897 3.308035 TGGATGGACTACATACGGAGT 57.692 47.619 0.00 0.00 43.86 3.85
2413 6912 5.814705 GTCTTTGTAGAGATTCCACTGGATG 59.185 44.000 0.00 0.00 0.00 3.51
2414 6913 5.723887 AGTCTTTGTAGAGATTCCACTGGAT 59.276 40.000 0.00 0.00 0.00 3.41
2415 6914 5.087323 AGTCTTTGTAGAGATTCCACTGGA 58.913 41.667 0.00 0.00 0.00 3.86
2416 6915 5.413309 AGTCTTTGTAGAGATTCCACTGG 57.587 43.478 0.00 0.00 0.00 4.00
2417 6916 7.378966 TGTAAGTCTTTGTAGAGATTCCACTG 58.621 38.462 0.00 0.00 0.00 3.66
2418 6917 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
2419 6918 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
2425 6924 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
2426 6925 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
2427 6926 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
2428 6927 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
2429 6928 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
2430 6929 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
2431 6930 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
2432 6931 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2433 6932 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2434 6933 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
2435 6934 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
2436 6935 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
2437 6936 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
2438 6937 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
2439 6938 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
2440 6939 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
2441 6940 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
2446 6945 7.670559 GCATATATATATACTCCCTCCGTTCCT 59.329 40.741 4.54 0.00 0.00 3.36
2447 6946 7.450634 TGCATATATATATACTCCCTCCGTTCC 59.549 40.741 4.54 0.00 0.00 3.62
2448 6947 8.405418 TGCATATATATATACTCCCTCCGTTC 57.595 38.462 4.54 0.00 0.00 3.95
2449 6948 8.005388 ACTGCATATATATATACTCCCTCCGTT 58.995 37.037 4.54 0.00 0.00 4.44
2450 6949 7.527796 ACTGCATATATATATACTCCCTCCGT 58.472 38.462 4.54 0.00 0.00 4.69
2451 6950 8.948145 GTACTGCATATATATATACTCCCTCCG 58.052 40.741 4.54 0.00 0.00 4.63
2452 6951 9.809395 TGTACTGCATATATATATACTCCCTCC 57.191 37.037 4.54 0.00 0.00 4.30
2461 6960 9.770097 GGCTGAACATGTACTGCATATATATAT 57.230 33.333 15.44 0.00 35.74 0.86
2462 6961 8.757877 TGGCTGAACATGTACTGCATATATATA 58.242 33.333 15.44 0.00 35.74 0.86
2463 6962 7.623630 TGGCTGAACATGTACTGCATATATAT 58.376 34.615 15.44 0.00 35.74 0.86
2464 6963 7.003402 TGGCTGAACATGTACTGCATATATA 57.997 36.000 15.44 0.00 35.74 0.86
2675 7198 1.258445 AACTCGTGATCTTCCCCGCT 61.258 55.000 0.00 0.00 0.00 5.52
3267 10889 5.983720 CGGTGGATTAGAAACACAGTATAGG 59.016 44.000 0.00 0.00 36.87 2.57
3277 10899 3.933332 CCAGACTTCGGTGGATTAGAAAC 59.067 47.826 0.00 0.00 35.67 2.78
3572 12120 5.372343 TGAAGCCATTAAGCAAGATCCTA 57.628 39.130 0.00 0.00 34.23 2.94
3936 13094 9.252962 GGGAGCTCAATAAACATTTTGATTATG 57.747 33.333 17.19 0.00 31.83 1.90
4386 13555 4.814771 TCTTGAACTCCTCCTTTTCGTTTC 59.185 41.667 0.00 0.00 0.00 2.78
4421 13590 2.863137 GCTAGCAGATCCTCGAAAACAG 59.137 50.000 10.63 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.