Multiple sequence alignment - TraesCS2B01G486400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G486400 chr2B 100.000 6213 0 0 318 6530 683126899 683133111 0.000000e+00 11474.0
1 TraesCS2B01G486400 chr2B 93.827 2932 167 7 1805 4728 683054274 683057199 0.000000e+00 4399.0
2 TraesCS2B01G486400 chr2B 89.475 2974 286 15 1833 4801 794694184 794691233 0.000000e+00 3733.0
3 TraesCS2B01G486400 chr2B 89.475 2974 286 15 1833 4801 794803085 794800134 0.000000e+00 3733.0
4 TraesCS2B01G486400 chr2B 84.583 3360 472 19 1822 5175 683159759 683163078 0.000000e+00 3293.0
5 TraesCS2B01G486400 chr2B 84.727 1794 259 11 1805 3593 683043161 683044944 0.000000e+00 1781.0
6 TraesCS2B01G486400 chr2B 85.618 1043 143 7 5488 6527 683071224 683072262 0.000000e+00 1088.0
7 TraesCS2B01G486400 chr2B 85.277 1046 141 12 5488 6527 683057622 683058660 0.000000e+00 1066.0
8 TraesCS2B01G486400 chr2B 84.286 1050 150 9 5488 6527 683046503 683047547 0.000000e+00 1011.0
9 TraesCS2B01G486400 chr2B 82.700 1052 169 11 5488 6530 794690895 794689848 0.000000e+00 922.0
10 TraesCS2B01G486400 chr2B 82.700 1052 169 11 5488 6530 794799796 794798749 0.000000e+00 922.0
11 TraesCS2B01G486400 chr2B 87.634 744 71 10 917 1647 683067038 683067773 0.000000e+00 845.0
12 TraesCS2B01G486400 chr2B 85.965 741 96 3 4758 5491 683046050 683046789 0.000000e+00 785.0
13 TraesCS2B01G486400 chr2B 88.839 448 48 2 1195 1641 683042612 683043058 3.440000e-152 549.0
14 TraesCS2B01G486400 chr2B 82.201 618 100 9 4877 5490 794691228 794690617 2.090000e-144 523.0
15 TraesCS2B01G486400 chr2B 82.201 618 100 9 4877 5490 794800129 794799518 2.090000e-144 523.0
16 TraesCS2B01G486400 chr2B 85.743 505 43 13 375 876 683066558 683067036 2.100000e-139 507.0
17 TraesCS2B01G486400 chr2B 86.787 333 42 2 5160 5491 683057571 683057902 2.880000e-98 370.0
18 TraesCS2B01G486400 chr2B 100.000 146 0 0 1 146 683126582 683126727 3.000000e-68 270.0
19 TraesCS2B01G486400 chr2B 93.548 93 6 0 1 93 283386580 283386672 8.830000e-29 139.0
20 TraesCS2B01G486400 chr2B 98.529 68 1 0 974 1041 794697000 794696933 3.200000e-23 121.0
21 TraesCS2B01G486400 chr2B 97.436 39 1 0 911 949 794697044 794697006 4.230000e-07 67.6
22 TraesCS2B01G486400 chr2A 86.265 3633 451 24 1787 5401 710206288 710209890 0.000000e+00 3901.0
23 TraesCS2B01G486400 chr2A 87.827 3056 356 14 1681 4728 710188006 710191053 0.000000e+00 3568.0
24 TraesCS2B01G486400 chr2A 86.405 1861 231 13 3633 5490 710095035 710096876 0.000000e+00 2015.0
25 TraesCS2B01G486400 chr2A 84.858 1836 267 6 3657 5491 710038203 710040028 0.000000e+00 1840.0
26 TraesCS2B01G486400 chr2A 84.495 1793 259 11 1805 3593 709850449 709852226 0.000000e+00 1753.0
27 TraesCS2B01G486400 chr2A 88.351 1322 114 17 318 1633 710186433 710187720 0.000000e+00 1552.0
28 TraesCS2B01G486400 chr2A 86.966 1381 130 24 318 1679 710204586 710205935 0.000000e+00 1507.0
29 TraesCS2B01G486400 chr2A 86.250 1040 142 1 5488 6527 710096597 710097635 0.000000e+00 1127.0
30 TraesCS2B01G486400 chr2A 85.153 1044 145 10 5488 6527 710191476 710192513 0.000000e+00 1061.0
31 TraesCS2B01G486400 chr2A 84.306 1045 153 10 5488 6527 709859349 709860387 0.000000e+00 1011.0
32 TraesCS2B01G486400 chr2A 89.310 449 42 5 1195 1639 710092699 710093145 5.720000e-155 558.0
33 TraesCS2B01G486400 chr2A 88.667 450 45 5 1195 1641 709849938 709850384 1.600000e-150 544.0
34 TraesCS2B01G486400 chr2A 88.971 408 43 2 1236 1641 710035892 710036299 2.720000e-138 503.0
35 TraesCS2B01G486400 chr2A 87.387 333 40 2 5160 5491 710191425 710191756 1.330000e-101 381.0
36 TraesCS2B01G486400 chr2D 82.398 4471 689 50 1067 5491 571526470 571530888 0.000000e+00 3807.0
37 TraesCS2B01G486400 chr2D 85.357 3360 451 17 1822 5175 571443443 571446767 0.000000e+00 3441.0
38 TraesCS2B01G486400 chr2D 83.278 2422 367 23 1196 3593 571194748 571197155 0.000000e+00 2194.0
39 TraesCS2B01G486400 chr2D 84.913 1836 266 6 3657 5491 571210989 571212814 0.000000e+00 1845.0
40 TraesCS2B01G486400 chr2D 84.498 1045 151 10 5488 6527 571198713 571199751 0.000000e+00 1022.0
41 TraesCS2B01G486400 chr2D 87.585 733 87 4 4758 5488 571198260 571198990 0.000000e+00 846.0
42 TraesCS2B01G486400 chr2D 88.406 414 46 2 1236 1647 571208678 571209091 1.260000e-136 497.0
43 TraesCS2B01G486400 chr2D 81.757 592 93 10 1070 1655 571442695 571443277 1.270000e-131 481.0
44 TraesCS2B01G486400 chr7A 100.000 93 0 0 1 93 69900702 69900794 8.710000e-39 172.0
45 TraesCS2B01G486400 chr7A 98.925 93 1 0 1 93 483672549 483672457 4.050000e-37 167.0
46 TraesCS2B01G486400 chr5A 97.802 91 2 0 3 93 476470153 476470243 2.440000e-34 158.0
47 TraesCS2B01G486400 chr6B 96.703 91 3 0 3 93 296612763 296612673 1.130000e-32 152.0
48 TraesCS2B01G486400 chr4A 94.505 91 5 0 3 93 609314492 609314582 2.450000e-29 141.0
49 TraesCS2B01G486400 chr3B 94.505 91 5 0 3 93 89599879 89599969 2.450000e-29 141.0
50 TraesCS2B01G486400 chr3D 93.407 91 6 0 1 91 556952049 556951959 1.140000e-27 135.0
51 TraesCS2B01G486400 chrUn 98.529 68 1 0 974 1041 332504214 332504281 3.200000e-23 121.0
52 TraesCS2B01G486400 chrUn 97.436 39 1 0 911 949 332504170 332504208 4.230000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G486400 chr2B 683126582 683133111 6529 False 5872.000000 11474 100.000000 1 6530 2 chr2B.!!$F6 6529
1 TraesCS2B01G486400 chr2B 683159759 683163078 3319 False 3293.000000 3293 84.583000 1822 5175 1 chr2B.!!$F2 3353
2 TraesCS2B01G486400 chr2B 683054274 683058660 4386 False 1945.000000 4399 88.630333 1805 6527 3 chr2B.!!$F4 4722
3 TraesCS2B01G486400 chr2B 794798749 794803085 4336 True 1726.000000 3733 84.792000 1833 6530 3 chr2B.!!$R2 4697
4 TraesCS2B01G486400 chr2B 794689848 794697044 7196 True 1073.320000 3733 90.068200 911 6530 5 chr2B.!!$R1 5619
5 TraesCS2B01G486400 chr2B 683042612 683047547 4935 False 1031.500000 1781 85.954250 1195 6527 4 chr2B.!!$F3 5332
6 TraesCS2B01G486400 chr2B 683066558 683072262 5704 False 813.333333 1088 86.331667 375 6527 3 chr2B.!!$F5 6152
7 TraesCS2B01G486400 chr2A 710204586 710209890 5304 False 2704.000000 3901 86.615500 318 5401 2 chr2A.!!$F6 5083
8 TraesCS2B01G486400 chr2A 710186433 710192513 6080 False 1640.500000 3568 87.179500 318 6527 4 chr2A.!!$F5 6209
9 TraesCS2B01G486400 chr2A 710092699 710097635 4936 False 1233.333333 2015 87.321667 1195 6527 3 chr2A.!!$F4 5332
10 TraesCS2B01G486400 chr2A 710035892 710040028 4136 False 1171.500000 1840 86.914500 1236 5491 2 chr2A.!!$F3 4255
11 TraesCS2B01G486400 chr2A 709849938 709852226 2288 False 1148.500000 1753 86.581000 1195 3593 2 chr2A.!!$F2 2398
12 TraesCS2B01G486400 chr2A 709859349 709860387 1038 False 1011.000000 1011 84.306000 5488 6527 1 chr2A.!!$F1 1039
13 TraesCS2B01G486400 chr2D 571526470 571530888 4418 False 3807.000000 3807 82.398000 1067 5491 1 chr2D.!!$F1 4424
14 TraesCS2B01G486400 chr2D 571442695 571446767 4072 False 1961.000000 3441 83.557000 1070 5175 2 chr2D.!!$F4 4105
15 TraesCS2B01G486400 chr2D 571194748 571199751 5003 False 1354.000000 2194 85.120333 1196 6527 3 chr2D.!!$F2 5331
16 TraesCS2B01G486400 chr2D 571208678 571212814 4136 False 1171.000000 1845 86.659500 1236 5491 2 chr2D.!!$F3 4255

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.033011 TGTAGTGCCCCCTCTCTCTC 60.033 60.000 0.00 0.00 0.00 3.20 F
1138 1165 0.244994 TCTCTCTCGTTTGCTGCCTC 59.755 55.000 0.00 0.00 0.00 4.70 F
1400 1446 0.316841 TTCGTGAAATTGGGCTTGCC 59.683 50.000 2.49 2.49 0.00 4.52 F
1580 1629 0.687354 ACCGACTCCAGCAACAGATT 59.313 50.000 0.00 0.00 0.00 2.40 F
2916 5114 0.040425 GTCGGCGCACTTTTGAACAT 60.040 50.000 10.83 0.00 0.00 2.71 F
4588 6807 0.670162 ATGTTGCAGCAACTGGTCAC 59.330 50.000 32.99 11.54 43.85 3.67 F
4858 7077 1.066908 CTCTTCCGCCTTCTGCTCTAG 59.933 57.143 0.00 0.00 38.05 2.43 F
5443 7680 0.034670 GCAAAGCCTGGATCTGGAGT 60.035 55.000 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1265 1301 0.039180 TCTCTCCCGCACACCTAAGA 59.961 55.000 0.00 0.00 0.00 2.10 R
2019 4206 1.179152 TCTACCGCGTGAGATCCAAA 58.821 50.000 4.92 0.00 0.00 3.28 R
2899 5097 2.241722 CTTATGTTCAAAAGTGCGCCG 58.758 47.619 4.18 0.00 0.00 6.46 R
3025 5227 5.465390 CGAGAAACAATGTTGAAGGTAGACA 59.535 40.000 0.00 0.00 0.00 3.41 R
4869 7088 1.060729 TCGAAACACCCCTCATGGAA 58.939 50.000 0.00 0.00 35.39 3.53 R
5424 7661 0.034670 ACTCCAGATCCAGGCTTTGC 60.035 55.000 0.00 0.00 0.00 3.68 R
6095 8335 0.035725 TCCCATGCAGAAGACAGCTG 60.036 55.000 13.48 13.48 36.47 4.24 R
6442 8682 0.178947 AGATCTTAGAGGCCCCTCGG 60.179 60.000 0.00 4.18 46.90 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.641305 AGACGTCTCTATACGCCAAGT 58.359 47.619 13.58 0.00 46.71 3.16
21 22 2.355132 AGACGTCTCTATACGCCAAGTG 59.645 50.000 13.58 0.00 46.71 3.16
22 23 2.353889 GACGTCTCTATACGCCAAGTGA 59.646 50.000 8.70 0.00 46.71 3.41
23 24 2.950309 ACGTCTCTATACGCCAAGTGAT 59.050 45.455 0.00 0.00 46.71 3.06
24 25 3.380637 ACGTCTCTATACGCCAAGTGATT 59.619 43.478 0.00 0.00 46.71 2.57
25 26 4.142227 ACGTCTCTATACGCCAAGTGATTT 60.142 41.667 0.00 0.00 46.71 2.17
26 27 4.804139 CGTCTCTATACGCCAAGTGATTTT 59.196 41.667 0.00 0.00 35.87 1.82
27 28 5.051641 CGTCTCTATACGCCAAGTGATTTTC 60.052 44.000 0.00 0.00 35.87 2.29
28 29 5.810587 GTCTCTATACGCCAAGTGATTTTCA 59.189 40.000 0.00 0.00 0.00 2.69
29 30 6.312918 GTCTCTATACGCCAAGTGATTTTCAA 59.687 38.462 0.00 0.00 0.00 2.69
30 31 7.011482 GTCTCTATACGCCAAGTGATTTTCAAT 59.989 37.037 0.00 0.00 0.00 2.57
31 32 8.201464 TCTCTATACGCCAAGTGATTTTCAATA 58.799 33.333 0.00 0.00 0.00 1.90
32 33 8.725405 TCTATACGCCAAGTGATTTTCAATAA 57.275 30.769 0.00 0.00 0.00 1.40
33 34 9.337396 TCTATACGCCAAGTGATTTTCAATAAT 57.663 29.630 0.00 0.00 0.00 1.28
34 35 9.385902 CTATACGCCAAGTGATTTTCAATAATG 57.614 33.333 0.00 0.00 0.00 1.90
35 36 6.266168 ACGCCAAGTGATTTTCAATAATGA 57.734 33.333 0.00 0.00 0.00 2.57
36 37 6.324819 ACGCCAAGTGATTTTCAATAATGAG 58.675 36.000 0.00 0.00 36.78 2.90
37 38 6.150976 ACGCCAAGTGATTTTCAATAATGAGA 59.849 34.615 0.00 0.00 36.78 3.27
38 39 6.470235 CGCCAAGTGATTTTCAATAATGAGAC 59.530 38.462 0.00 0.00 36.78 3.36
39 40 6.470235 GCCAAGTGATTTTCAATAATGAGACG 59.530 38.462 0.00 0.00 36.78 4.18
40 41 7.530010 CCAAGTGATTTTCAATAATGAGACGT 58.470 34.615 0.00 0.00 36.78 4.34
41 42 8.664798 CCAAGTGATTTTCAATAATGAGACGTA 58.335 33.333 0.00 0.00 36.78 3.57
42 43 9.694520 CAAGTGATTTTCAATAATGAGACGTAG 57.305 33.333 0.00 0.00 36.78 3.51
43 44 9.653287 AAGTGATTTTCAATAATGAGACGTAGA 57.347 29.630 0.00 0.00 36.78 2.59
44 45 9.823647 AGTGATTTTCAATAATGAGACGTAGAT 57.176 29.630 0.00 0.00 36.78 1.98
51 52 8.282124 TCAATAATGAGACGTAGATAAAAGCG 57.718 34.615 0.00 0.00 0.00 4.68
52 53 7.919091 TCAATAATGAGACGTAGATAAAAGCGT 59.081 33.333 0.00 0.00 40.44 5.07
60 61 6.715344 ACGTAGATAAAAGCGTCAAATCAA 57.285 33.333 0.00 0.00 31.54 2.57
61 62 7.124347 ACGTAGATAAAAGCGTCAAATCAAA 57.876 32.000 0.00 0.00 31.54 2.69
62 63 7.577979 ACGTAGATAAAAGCGTCAAATCAAAA 58.422 30.769 0.00 0.00 31.54 2.44
63 64 8.071368 ACGTAGATAAAAGCGTCAAATCAAAAA 58.929 29.630 0.00 0.00 31.54 1.94
64 65 8.355806 CGTAGATAAAAGCGTCAAATCAAAAAC 58.644 33.333 0.00 0.00 0.00 2.43
65 66 7.320499 AGATAAAAGCGTCAAATCAAAAACG 57.680 32.000 0.00 0.00 38.13 3.60
66 67 6.915843 AGATAAAAGCGTCAAATCAAAAACGT 59.084 30.769 0.00 0.00 37.45 3.99
67 68 5.369947 AAAAGCGTCAAATCAAAAACGTC 57.630 34.783 0.00 0.00 37.45 4.34
68 69 3.963383 AGCGTCAAATCAAAAACGTCT 57.037 38.095 0.00 0.00 37.45 4.18
69 70 3.873529 AGCGTCAAATCAAAAACGTCTC 58.126 40.909 0.00 0.00 37.45 3.36
70 71 3.560068 AGCGTCAAATCAAAAACGTCTCT 59.440 39.130 0.00 0.00 37.45 3.10
71 72 4.748102 AGCGTCAAATCAAAAACGTCTCTA 59.252 37.500 0.00 0.00 37.45 2.43
72 73 4.839174 GCGTCAAATCAAAAACGTCTCTAC 59.161 41.667 0.00 0.00 37.45 2.59
73 74 5.557514 GCGTCAAATCAAAAACGTCTCTACA 60.558 40.000 0.00 0.00 37.45 2.74
74 75 6.590357 CGTCAAATCAAAAACGTCTCTACAT 58.410 36.000 0.00 0.00 0.00 2.29
75 76 6.516355 CGTCAAATCAAAAACGTCTCTACATG 59.484 38.462 0.00 0.00 0.00 3.21
76 77 7.352739 GTCAAATCAAAAACGTCTCTACATGT 58.647 34.615 2.69 2.69 0.00 3.21
77 78 7.530861 GTCAAATCAAAAACGTCTCTACATGTC 59.469 37.037 0.00 0.00 0.00 3.06
78 79 7.441157 TCAAATCAAAAACGTCTCTACATGTCT 59.559 33.333 0.00 0.00 0.00 3.41
79 80 8.708742 CAAATCAAAAACGTCTCTACATGTCTA 58.291 33.333 0.00 0.00 0.00 2.59
80 81 9.436957 AAATCAAAAACGTCTCTACATGTCTAT 57.563 29.630 0.00 0.00 0.00 1.98
81 82 9.436957 AATCAAAAACGTCTCTACATGTCTATT 57.563 29.630 0.00 0.00 0.00 1.73
82 83 8.827177 TCAAAAACGTCTCTACATGTCTATTT 57.173 30.769 0.00 0.00 0.00 1.40
83 84 9.268268 TCAAAAACGTCTCTACATGTCTATTTT 57.732 29.630 0.00 0.00 0.00 1.82
84 85 9.318041 CAAAAACGTCTCTACATGTCTATTTTG 57.682 33.333 0.00 6.82 0.00 2.44
85 86 8.603242 AAAACGTCTCTACATGTCTATTTTGT 57.397 30.769 0.00 0.00 0.00 2.83
86 87 8.603242 AAACGTCTCTACATGTCTATTTTGTT 57.397 30.769 0.00 0.00 0.00 2.83
87 88 7.582435 ACGTCTCTACATGTCTATTTTGTTG 57.418 36.000 0.00 0.00 0.00 3.33
88 89 7.152645 ACGTCTCTACATGTCTATTTTGTTGT 58.847 34.615 0.00 0.00 0.00 3.32
89 90 8.301720 ACGTCTCTACATGTCTATTTTGTTGTA 58.698 33.333 0.00 0.00 0.00 2.41
90 91 8.799091 CGTCTCTACATGTCTATTTTGTTGTAG 58.201 37.037 0.00 0.00 38.44 2.74
91 92 9.640963 GTCTCTACATGTCTATTTTGTTGTAGT 57.359 33.333 0.00 0.00 38.32 2.73
92 93 9.639601 TCTCTACATGTCTATTTTGTTGTAGTG 57.360 33.333 0.00 5.93 38.32 2.74
93 94 8.251750 TCTACATGTCTATTTTGTTGTAGTGC 57.748 34.615 0.00 0.00 38.32 4.40
94 95 6.254281 ACATGTCTATTTTGTTGTAGTGCC 57.746 37.500 0.00 0.00 0.00 5.01
95 96 5.183140 ACATGTCTATTTTGTTGTAGTGCCC 59.817 40.000 0.00 0.00 0.00 5.36
96 97 4.076394 TGTCTATTTTGTTGTAGTGCCCC 58.924 43.478 0.00 0.00 0.00 5.80
97 98 3.442625 GTCTATTTTGTTGTAGTGCCCCC 59.557 47.826 0.00 0.00 0.00 5.40
98 99 2.694616 ATTTTGTTGTAGTGCCCCCT 57.305 45.000 0.00 0.00 0.00 4.79
99 100 1.989706 TTTTGTTGTAGTGCCCCCTC 58.010 50.000 0.00 0.00 0.00 4.30
100 101 1.145571 TTTGTTGTAGTGCCCCCTCT 58.854 50.000 0.00 0.00 0.00 3.69
101 102 0.690762 TTGTTGTAGTGCCCCCTCTC 59.309 55.000 0.00 0.00 0.00 3.20
102 103 0.178903 TGTTGTAGTGCCCCCTCTCT 60.179 55.000 0.00 0.00 0.00 3.10
103 104 0.537653 GTTGTAGTGCCCCCTCTCTC 59.462 60.000 0.00 0.00 0.00 3.20
104 105 0.413832 TTGTAGTGCCCCCTCTCTCT 59.586 55.000 0.00 0.00 0.00 3.10
105 106 0.033011 TGTAGTGCCCCCTCTCTCTC 60.033 60.000 0.00 0.00 0.00 3.20
106 107 0.260523 GTAGTGCCCCCTCTCTCTCT 59.739 60.000 0.00 0.00 0.00 3.10
107 108 0.553819 TAGTGCCCCCTCTCTCTCTC 59.446 60.000 0.00 0.00 0.00 3.20
108 109 1.221213 AGTGCCCCCTCTCTCTCTCT 61.221 60.000 0.00 0.00 0.00 3.10
109 110 0.325203 GTGCCCCCTCTCTCTCTCTT 60.325 60.000 0.00 0.00 0.00 2.85
110 111 0.415429 TGCCCCCTCTCTCTCTCTTT 59.585 55.000 0.00 0.00 0.00 2.52
111 112 0.829990 GCCCCCTCTCTCTCTCTTTG 59.170 60.000 0.00 0.00 0.00 2.77
112 113 1.899438 GCCCCCTCTCTCTCTCTTTGT 60.899 57.143 0.00 0.00 0.00 2.83
113 114 2.624557 GCCCCCTCTCTCTCTCTTTGTA 60.625 54.545 0.00 0.00 0.00 2.41
114 115 3.922375 CCCCCTCTCTCTCTCTTTGTAT 58.078 50.000 0.00 0.00 0.00 2.29
115 116 4.693058 GCCCCCTCTCTCTCTCTTTGTATA 60.693 50.000 0.00 0.00 0.00 1.47
116 117 5.650283 CCCCCTCTCTCTCTCTTTGTATAT 58.350 45.833 0.00 0.00 0.00 0.86
117 118 5.714806 CCCCCTCTCTCTCTCTTTGTATATC 59.285 48.000 0.00 0.00 0.00 1.63
118 119 6.468651 CCCCCTCTCTCTCTCTTTGTATATCT 60.469 46.154 0.00 0.00 0.00 1.98
119 120 6.434028 CCCCTCTCTCTCTCTTTGTATATCTG 59.566 46.154 0.00 0.00 0.00 2.90
120 121 7.004086 CCCTCTCTCTCTCTTTGTATATCTGT 58.996 42.308 0.00 0.00 0.00 3.41
121 122 7.505585 CCCTCTCTCTCTCTTTGTATATCTGTT 59.494 40.741 0.00 0.00 0.00 3.16
122 123 8.567948 CCTCTCTCTCTCTTTGTATATCTGTTC 58.432 40.741 0.00 0.00 0.00 3.18
123 124 9.119418 CTCTCTCTCTCTTTGTATATCTGTTCA 57.881 37.037 0.00 0.00 0.00 3.18
124 125 8.898761 TCTCTCTCTCTTTGTATATCTGTTCAC 58.101 37.037 0.00 0.00 0.00 3.18
125 126 8.815565 TCTCTCTCTTTGTATATCTGTTCACT 57.184 34.615 0.00 0.00 0.00 3.41
126 127 8.898761 TCTCTCTCTTTGTATATCTGTTCACTC 58.101 37.037 0.00 0.00 0.00 3.51
127 128 8.815565 TCTCTCTTTGTATATCTGTTCACTCT 57.184 34.615 0.00 0.00 0.00 3.24
128 129 8.681806 TCTCTCTTTGTATATCTGTTCACTCTG 58.318 37.037 0.00 0.00 0.00 3.35
129 130 7.776107 TCTCTTTGTATATCTGTTCACTCTGG 58.224 38.462 0.00 0.00 0.00 3.86
130 131 6.878317 TCTTTGTATATCTGTTCACTCTGGG 58.122 40.000 0.00 0.00 0.00 4.45
131 132 4.672587 TGTATATCTGTTCACTCTGGGC 57.327 45.455 0.00 0.00 0.00 5.36
132 133 3.388024 TGTATATCTGTTCACTCTGGGCC 59.612 47.826 0.00 0.00 0.00 5.80
133 134 2.254152 TATCTGTTCACTCTGGGCCT 57.746 50.000 4.53 0.00 0.00 5.19
134 135 0.908198 ATCTGTTCACTCTGGGCCTC 59.092 55.000 4.53 0.00 0.00 4.70
135 136 1.079543 CTGTTCACTCTGGGCCTCG 60.080 63.158 4.53 0.00 0.00 4.63
136 137 2.266055 GTTCACTCTGGGCCTCGG 59.734 66.667 4.53 0.00 0.00 4.63
137 138 2.203788 TTCACTCTGGGCCTCGGT 60.204 61.111 4.53 0.00 0.00 4.69
138 139 2.283529 TTCACTCTGGGCCTCGGTC 61.284 63.158 4.53 0.00 0.00 4.79
139 140 3.775654 CACTCTGGGCCTCGGTCC 61.776 72.222 4.53 0.00 41.01 4.46
144 145 3.176297 TGGGCCTCGGTCCATTTT 58.824 55.556 4.89 0.00 46.04 1.82
145 146 1.462928 TGGGCCTCGGTCCATTTTT 59.537 52.632 4.89 0.00 46.04 1.94
464 472 0.811219 TCTCCTGTATGCATGTGCGC 60.811 55.000 10.16 0.00 45.83 6.09
511 519 7.462590 AGGCCCAATACCTATTCTTATTTCTC 58.537 38.462 0.00 0.00 35.10 2.87
650 659 6.405397 CCCAGCCAAATACACCATTAGTTAAC 60.405 42.308 0.00 0.00 0.00 2.01
751 762 2.819608 GCCATGTGCTTCAGTTAAAGGA 59.180 45.455 0.00 0.00 36.87 3.36
876 890 3.817647 AGTTTCCATGAAAGTGCTCTGTC 59.182 43.478 0.00 0.00 34.41 3.51
1054 1076 5.297029 GTGCTTCCTTGTAAGTTCCATATCC 59.703 44.000 0.00 0.00 0.00 2.59
1103 1125 4.010349 ACTTGGTAATGCTAGCTGGTTTC 58.990 43.478 17.23 6.27 0.00 2.78
1127 1152 5.038033 GGTGCATAGTTTAACTCTCTCTCG 58.962 45.833 0.00 0.00 0.00 4.04
1138 1165 0.244994 TCTCTCTCGTTTGCTGCCTC 59.755 55.000 0.00 0.00 0.00 4.70
1157 1188 2.039613 CTCCCTTGCTTTCTGTCTTCCT 59.960 50.000 0.00 0.00 0.00 3.36
1228 1264 0.961753 CTGTTTGGTTTCTCCCCTGC 59.038 55.000 0.00 0.00 34.77 4.85
1258 1294 0.390735 CTTTTGCTCCTGCCATTGCC 60.391 55.000 0.00 0.00 38.71 4.52
1265 1301 3.367743 CTGCCATTGCCGTGCTGT 61.368 61.111 0.00 0.00 36.33 4.40
1374 1420 6.319048 ACTTCTTCACTGGACATATGGAAT 57.681 37.500 7.80 0.00 0.00 3.01
1381 1427 4.042560 CACTGGACATATGGAATCCTGGAT 59.957 45.833 16.91 2.57 36.16 3.41
1400 1446 0.316841 TTCGTGAAATTGGGCTTGCC 59.683 50.000 2.49 2.49 0.00 4.52
1418 1464 1.677217 GCCGAAGATGTGGAGAAGCTT 60.677 52.381 0.00 0.00 0.00 3.74
1580 1629 0.687354 ACCGACTCCAGCAACAGATT 59.313 50.000 0.00 0.00 0.00 2.40
1603 1652 5.620206 TGAAGAAGGTGCTTCATTTGTCTA 58.380 37.500 0.00 0.00 46.73 2.59
1604 1653 6.061441 TGAAGAAGGTGCTTCATTTGTCTAA 58.939 36.000 0.00 0.00 46.73 2.10
1626 1675 5.453567 ACCTGTTCTATTTTGGTTGCTTC 57.546 39.130 0.00 0.00 0.00 3.86
1643 1693 4.380531 TGCTTCCAGCTTCTTTATATCGG 58.619 43.478 0.00 0.00 42.97 4.18
1648 1698 4.161565 TCCAGCTTCTTTATATCGGTGTGT 59.838 41.667 0.00 0.00 0.00 3.72
1655 1705 7.572353 GCTTCTTTATATCGGTGTGTTTGTGAA 60.572 37.037 0.00 0.00 0.00 3.18
1656 1706 7.124347 TCTTTATATCGGTGTGTTTGTGAAC 57.876 36.000 0.00 0.00 36.29 3.18
1657 1707 5.518529 TTATATCGGTGTGTTTGTGAACG 57.481 39.130 0.00 0.00 38.65 3.95
1662 1712 1.003223 GGTGTGTTTGTGAACGCTACC 60.003 52.381 4.72 6.56 44.60 3.18
1664 1714 1.937223 TGTGTTTGTGAACGCTACCTG 59.063 47.619 4.72 0.00 44.60 4.00
1665 1715 1.263217 GTGTTTGTGAACGCTACCTGG 59.737 52.381 0.00 0.00 41.82 4.45
1677 3732 1.411612 GCTACCTGGTGGCGTATAGTT 59.588 52.381 19.63 0.00 36.63 2.24
1704 3788 3.076621 TGTAACCAAGAGCAGCTGAATG 58.923 45.455 20.43 9.57 0.00 2.67
1729 3813 1.553690 GGCACTGCCCCTCAGACTAA 61.554 60.000 9.13 0.00 45.72 2.24
1742 3826 6.045955 CCCTCAGACTAACTCTTGCTTAATC 58.954 44.000 0.00 0.00 0.00 1.75
1743 3827 6.351371 CCCTCAGACTAACTCTTGCTTAATCA 60.351 42.308 0.00 0.00 0.00 2.57
1785 3873 9.829637 GATTCAACTTTTGTTAAAATTGTCGAC 57.170 29.630 9.11 9.11 41.35 4.20
1788 3876 5.575019 ACTTTTGTTAAAATTGTCGACGCT 58.425 33.333 11.62 0.00 0.00 5.07
1799 3887 2.703416 TGTCGACGCTAAAGGTAGAGA 58.297 47.619 11.62 0.00 31.99 3.10
1867 4047 1.969103 GCTTTTGCTTAAGTGGCTCG 58.031 50.000 4.02 0.00 43.35 5.03
1878 4059 1.961793 AGTGGCTCGTTTTGCTTGTA 58.038 45.000 0.00 0.00 0.00 2.41
1880 4061 1.602377 GTGGCTCGTTTTGCTTGTACT 59.398 47.619 0.00 0.00 0.00 2.73
1892 4073 9.440784 CGTTTTGCTTGTACTAAAATAACTGAA 57.559 29.630 0.00 0.00 0.00 3.02
2019 4206 1.269448 CGCCACAAGCCAAATAACTGT 59.731 47.619 0.00 0.00 38.78 3.55
2386 4576 1.278238 GTATTGGGAAGACGACGCTG 58.722 55.000 0.00 0.00 0.00 5.18
2477 4667 4.823989 CCACAAACTTCAGTGAAAGGAGAT 59.176 41.667 7.06 0.00 37.97 2.75
2899 5097 1.534595 CCACTTGCTGCACAAAGTGTC 60.535 52.381 23.76 0.00 37.96 3.67
2902 5100 2.050985 GCTGCACAAAGTGTCGGC 60.051 61.111 0.00 8.72 35.89 5.54
2916 5114 0.040425 GTCGGCGCACTTTTGAACAT 60.040 50.000 10.83 0.00 0.00 2.71
3025 5227 8.484214 TGAAGCTCAGTTATGATTATCTACCT 57.516 34.615 0.00 0.00 34.12 3.08
3059 5261 5.786401 ACATTGTTTCTCGTATTGCTCTC 57.214 39.130 0.00 0.00 0.00 3.20
3230 5432 5.869649 AAAGGTTGGCTCAAAGTATGTTT 57.130 34.783 0.00 0.00 0.00 2.83
3343 5545 4.022068 AGTGTTCGCCATTTGTCAATCATT 60.022 37.500 0.00 0.00 0.00 2.57
3593 5798 7.387673 TGTTAAATCCATACCATCTTCGCTATG 59.612 37.037 0.00 0.00 0.00 2.23
3644 5849 8.227119 CAGACAGATCATTGTATAGAGTCTACG 58.773 40.741 0.85 0.00 33.01 3.51
3651 5862 8.047413 TCATTGTATAGAGTCTACGACAACAA 57.953 34.615 22.66 17.40 34.60 2.83
3722 5939 4.819769 TGCTGGTATTTCAGGCAATTTTC 58.180 39.130 0.00 0.00 35.43 2.29
3811 6028 2.963432 GCAATAGCTTGTGTTGGCAAT 58.037 42.857 1.92 0.00 37.91 3.56
3899 6116 3.196469 TCAGTCCCTGAATGAGCTTGTAG 59.804 47.826 0.00 0.00 37.57 2.74
3905 6122 5.105310 TCCCTGAATGAGCTTGTAGTACTTC 60.105 44.000 0.00 0.00 0.00 3.01
4096 6313 9.103861 GATCTCAAAACTCTAGAAATAACTGGG 57.896 37.037 0.00 0.00 0.00 4.45
4144 6361 5.978814 TGGCTTTCTAATACTTCCTCACTC 58.021 41.667 0.00 0.00 0.00 3.51
4146 6363 6.156949 TGGCTTTCTAATACTTCCTCACTCAT 59.843 38.462 0.00 0.00 0.00 2.90
4155 6372 3.119316 ACTTCCTCACTCATCTTACTGCG 60.119 47.826 0.00 0.00 0.00 5.18
4158 6375 2.480416 CCTCACTCATCTTACTGCGGAC 60.480 54.545 0.00 0.00 0.00 4.79
4249 6466 6.072673 GGAAGTTAACGTTGATCAGGATGTTT 60.073 38.462 11.99 0.00 37.40 2.83
4352 6569 7.206789 TCTTATGGAATGGAATTGACCTACA 57.793 36.000 0.00 0.00 36.07 2.74
4540 6759 3.519908 TTTCTGTTCGAGACATTTGCG 57.480 42.857 1.76 0.00 37.69 4.85
4588 6807 0.670162 ATGTTGCAGCAACTGGTCAC 59.330 50.000 32.99 11.54 43.85 3.67
4600 6819 2.530701 ACTGGTCACTCCTTCCACTAG 58.469 52.381 0.00 0.00 37.07 2.57
4602 6821 1.196012 GGTCACTCCTTCCACTAGGG 58.804 60.000 0.00 0.00 35.90 3.53
4647 6866 2.012673 GAGTTGATGGACCTGCATGTC 58.987 52.381 13.19 13.19 34.42 3.06
4749 6968 1.346068 ACTTCTCCACCTCTGCAACTC 59.654 52.381 0.00 0.00 0.00 3.01
4784 7003 4.418190 AGGAGATCAAAAGGGATGGCTATT 59.582 41.667 0.00 0.00 0.00 1.73
4785 7004 4.522022 GGAGATCAAAAGGGATGGCTATTG 59.478 45.833 0.00 0.00 0.00 1.90
4793 7012 2.090267 AGGGATGGCTATTGAGTCTCCT 60.090 50.000 0.00 0.00 29.99 3.69
4795 7014 3.495806 GGGATGGCTATTGAGTCTCCTTG 60.496 52.174 0.00 0.00 29.99 3.61
4858 7077 1.066908 CTCTTCCGCCTTCTGCTCTAG 59.933 57.143 0.00 0.00 38.05 2.43
4869 7088 5.546526 CCTTCTGCTCTAGTTTCTGAGTTT 58.453 41.667 0.00 0.00 33.22 2.66
4875 7094 5.702670 TGCTCTAGTTTCTGAGTTTTCCATG 59.297 40.000 0.00 0.00 33.22 3.66
4881 7100 2.348472 TCTGAGTTTTCCATGAGGGGT 58.652 47.619 0.00 0.00 37.22 4.95
4914 7133 7.390718 ACACTTCCAACAATGAGGATAAAGTAC 59.609 37.037 0.68 0.00 33.10 2.73
4915 7134 6.594159 ACTTCCAACAATGAGGATAAAGTACG 59.406 38.462 0.68 0.00 33.10 3.67
4940 7159 7.467267 CGGATGGTTCAAAATCGAATCTAATGT 60.467 37.037 0.00 0.00 0.00 2.71
4984 7203 7.446625 ACAGTATCTTGGCATTCCATAATCTTC 59.553 37.037 0.00 0.00 43.05 2.87
4997 7216 2.240493 AATCTTCGGGGCATAAGACG 57.760 50.000 0.00 0.00 34.70 4.18
5052 7271 4.818546 TCTCTTTCAAGTGAAGCTTTCAGG 59.181 41.667 0.00 0.00 41.01 3.86
5060 7279 4.393693 AGCTTTCAGGCAGCTCAC 57.606 55.556 0.00 0.00 44.77 3.51
5205 7427 1.533625 ACATTAGCACATGTGGCGTT 58.466 45.000 26.55 7.45 35.97 4.84
5334 7565 1.418637 ACGGAAGGAACCAGCAGTTTA 59.581 47.619 0.00 0.00 39.40 2.01
5411 7648 9.836179 ATATAATCTCCTATGTTCTCTCAAGGT 57.164 33.333 0.00 0.00 0.00 3.50
5412 7649 5.867903 ATCTCCTATGTTCTCTCAAGGTG 57.132 43.478 0.00 0.00 0.00 4.00
5413 7650 3.449018 TCTCCTATGTTCTCTCAAGGTGC 59.551 47.826 0.00 0.00 0.00 5.01
5414 7651 3.445008 TCCTATGTTCTCTCAAGGTGCT 58.555 45.455 0.00 0.00 0.00 4.40
5415 7652 4.610333 TCCTATGTTCTCTCAAGGTGCTA 58.390 43.478 0.00 0.00 0.00 3.49
5416 7653 5.211973 TCCTATGTTCTCTCAAGGTGCTAT 58.788 41.667 0.00 0.00 0.00 2.97
5417 7654 5.069648 TCCTATGTTCTCTCAAGGTGCTATG 59.930 44.000 0.00 0.00 0.00 2.23
5418 7655 3.616956 TGTTCTCTCAAGGTGCTATGG 57.383 47.619 0.00 0.00 0.00 2.74
5419 7656 3.173151 TGTTCTCTCAAGGTGCTATGGA 58.827 45.455 0.00 0.00 0.00 3.41
5420 7657 3.776969 TGTTCTCTCAAGGTGCTATGGAT 59.223 43.478 0.00 0.00 0.00 3.41
5421 7658 4.225942 TGTTCTCTCAAGGTGCTATGGATT 59.774 41.667 0.00 0.00 0.00 3.01
5422 7659 4.679373 TCTCTCAAGGTGCTATGGATTC 57.321 45.455 0.00 0.00 0.00 2.52
5423 7660 4.033009 TCTCTCAAGGTGCTATGGATTCA 58.967 43.478 0.00 0.00 0.00 2.57
5424 7661 4.100653 TCTCTCAAGGTGCTATGGATTCAG 59.899 45.833 0.00 0.00 0.00 3.02
5425 7662 2.877168 CTCAAGGTGCTATGGATTCAGC 59.123 50.000 0.00 0.00 38.31 4.26
5426 7663 2.239402 TCAAGGTGCTATGGATTCAGCA 59.761 45.455 0.00 0.00 45.23 4.41
5431 7668 2.026641 TGCTATGGATTCAGCAAAGCC 58.973 47.619 0.00 0.00 44.49 4.35
5432 7669 2.305009 GCTATGGATTCAGCAAAGCCT 58.695 47.619 7.53 0.00 44.17 4.58
5433 7670 2.034305 GCTATGGATTCAGCAAAGCCTG 59.966 50.000 7.53 0.00 44.17 4.85
5434 7671 1.481871 ATGGATTCAGCAAAGCCTGG 58.518 50.000 7.53 0.00 44.17 4.45
5435 7672 0.405198 TGGATTCAGCAAAGCCTGGA 59.595 50.000 0.00 0.00 44.17 3.86
5436 7673 1.006281 TGGATTCAGCAAAGCCTGGAT 59.994 47.619 0.00 0.00 44.17 3.41
5437 7674 1.680207 GGATTCAGCAAAGCCTGGATC 59.320 52.381 0.00 2.51 43.97 3.36
5438 7675 2.652590 GATTCAGCAAAGCCTGGATCT 58.347 47.619 0.00 0.00 42.25 2.75
5439 7676 1.830279 TTCAGCAAAGCCTGGATCTG 58.170 50.000 0.00 0.00 33.64 2.90
5440 7677 0.034767 TCAGCAAAGCCTGGATCTGG 60.035 55.000 0.00 0.00 33.64 3.86
5441 7678 0.034767 CAGCAAAGCCTGGATCTGGA 60.035 55.000 0.00 0.00 0.00 3.86
5442 7679 0.255318 AGCAAAGCCTGGATCTGGAG 59.745 55.000 0.00 0.00 0.00 3.86
5443 7680 0.034670 GCAAAGCCTGGATCTGGAGT 60.035 55.000 0.00 0.00 0.00 3.85
5444 7681 2.016096 GCAAAGCCTGGATCTGGAGTC 61.016 57.143 0.00 0.00 0.00 3.36
5445 7682 0.915364 AAAGCCTGGATCTGGAGTCC 59.085 55.000 0.73 0.73 36.26 3.85
5446 7683 0.043940 AAGCCTGGATCTGGAGTCCT 59.956 55.000 11.33 0.00 36.68 3.85
5447 7684 0.690411 AGCCTGGATCTGGAGTCCTG 60.690 60.000 11.33 10.48 36.68 3.86
5448 7685 0.980231 GCCTGGATCTGGAGTCCTGT 60.980 60.000 11.33 0.89 36.68 4.00
5449 7686 0.829333 CCTGGATCTGGAGTCCTGTG 59.171 60.000 11.33 0.90 36.68 3.66
5450 7687 0.829333 CTGGATCTGGAGTCCTGTGG 59.171 60.000 11.33 0.00 36.68 4.17
5451 7688 0.413434 TGGATCTGGAGTCCTGTGGA 59.587 55.000 11.33 4.13 36.68 4.02
5452 7689 1.118838 GGATCTGGAGTCCTGTGGAG 58.881 60.000 11.33 0.00 32.85 3.86
5453 7690 1.118838 GATCTGGAGTCCTGTGGAGG 58.881 60.000 11.33 0.00 41.39 4.30
5454 7691 0.415429 ATCTGGAGTCCTGTGGAGGT 59.585 55.000 11.33 0.00 40.76 3.85
5455 7692 1.081481 TCTGGAGTCCTGTGGAGGTA 58.919 55.000 11.33 0.00 40.76 3.08
5456 7693 1.006043 TCTGGAGTCCTGTGGAGGTAG 59.994 57.143 11.33 0.00 40.76 3.18
5457 7694 0.784495 TGGAGTCCTGTGGAGGTAGT 59.216 55.000 11.33 0.00 40.76 2.73
5458 7695 1.997791 TGGAGTCCTGTGGAGGTAGTA 59.002 52.381 11.33 0.00 40.76 1.82
5459 7696 2.025226 TGGAGTCCTGTGGAGGTAGTAG 60.025 54.545 11.33 0.00 40.76 2.57
5460 7697 2.241685 GGAGTCCTGTGGAGGTAGTAGA 59.758 54.545 0.41 0.00 40.76 2.59
5461 7698 3.547746 GAGTCCTGTGGAGGTAGTAGAG 58.452 54.545 0.00 0.00 40.76 2.43
5462 7699 3.191273 AGTCCTGTGGAGGTAGTAGAGA 58.809 50.000 0.00 0.00 40.76 3.10
5463 7700 3.054213 AGTCCTGTGGAGGTAGTAGAGAC 60.054 52.174 0.00 0.00 40.76 3.36
5464 7701 3.054213 GTCCTGTGGAGGTAGTAGAGACT 60.054 52.174 0.00 0.00 40.76 3.24
5465 7702 3.592427 TCCTGTGGAGGTAGTAGAGACTT 59.408 47.826 0.00 0.00 40.76 3.01
5466 7703 3.949113 CCTGTGGAGGTAGTAGAGACTTC 59.051 52.174 0.00 0.00 37.10 3.01
5467 7704 4.567958 CCTGTGGAGGTAGTAGAGACTTCA 60.568 50.000 0.00 0.00 37.10 3.02
5468 7705 4.333690 TGTGGAGGTAGTAGAGACTTCAC 58.666 47.826 0.00 0.00 37.10 3.18
5469 7706 4.202535 TGTGGAGGTAGTAGAGACTTCACA 60.203 45.833 0.00 0.00 37.10 3.58
5470 7707 4.396790 GTGGAGGTAGTAGAGACTTCACAG 59.603 50.000 0.00 0.00 37.10 3.66
5471 7708 3.949113 GGAGGTAGTAGAGACTTCACAGG 59.051 52.174 0.00 0.00 37.10 4.00
5472 7709 4.324408 GGAGGTAGTAGAGACTTCACAGGA 60.324 50.000 0.00 0.00 37.10 3.86
5473 7710 5.442391 GAGGTAGTAGAGACTTCACAGGAT 58.558 45.833 0.00 0.00 37.10 3.24
5474 7711 5.833340 AGGTAGTAGAGACTTCACAGGATT 58.167 41.667 0.00 0.00 37.10 3.01
5475 7712 5.889289 AGGTAGTAGAGACTTCACAGGATTC 59.111 44.000 0.00 0.00 37.10 2.52
5476 7713 5.652891 GGTAGTAGAGACTTCACAGGATTCA 59.347 44.000 0.00 0.00 37.10 2.57
5477 7714 5.652994 AGTAGAGACTTCACAGGATTCAC 57.347 43.478 0.00 0.00 28.61 3.18
5478 7715 3.971245 AGAGACTTCACAGGATTCACC 57.029 47.619 0.00 0.00 39.35 4.02
5479 7716 5.753541 AGTAGAGACTTCACAGGATTCACCT 60.754 44.000 0.00 0.00 40.90 4.00
5480 7717 7.529482 AGTAGAGACTTCACAGGATTCACCTC 61.529 46.154 0.00 0.00 38.98 3.85
5481 7718 9.610215 AGTAGAGACTTCACAGGATTCACCTCT 62.610 44.444 0.00 0.00 38.98 3.69
5498 7735 2.376109 CTCTCTTACGGAGGTGGCTAA 58.624 52.381 0.00 0.00 42.10 3.09
5500 7737 1.822990 CTCTTACGGAGGTGGCTAACA 59.177 52.381 0.00 0.00 38.35 2.41
5521 7758 3.490155 CACAAATGCTTTCACATTCGCAA 59.510 39.130 0.00 0.00 39.32 4.85
5543 7780 2.912956 TCCCTTGAGGAGTTGCTGTTAT 59.087 45.455 0.00 0.00 40.93 1.89
5544 7781 3.012518 CCCTTGAGGAGTTGCTGTTATG 58.987 50.000 0.00 0.00 38.24 1.90
5623 7860 1.202806 AGCAGTTTGGCTTCAGCAGTA 60.203 47.619 0.30 0.00 42.71 2.74
5631 7868 2.040278 TGGCTTCAGCAGTAATGACCTT 59.960 45.455 0.30 0.00 44.36 3.50
5632 7869 3.084786 GGCTTCAGCAGTAATGACCTTT 58.915 45.455 0.30 0.00 44.36 3.11
5665 7902 6.389091 TGAACATGAATTGAAACTGCCATAC 58.611 36.000 0.00 0.00 0.00 2.39
5675 7912 5.428253 TGAAACTGCCATACAATCTCCTAC 58.572 41.667 0.00 0.00 0.00 3.18
5706 7943 6.475504 TCAAGAAGTTATGGATTCAGCTGAA 58.524 36.000 30.23 30.23 38.56 3.02
5728 7965 2.182827 CTGGATCTGGAGTTCTGTGGA 58.817 52.381 0.00 0.00 0.00 4.02
5766 8003 2.892784 GGATTCACCTCTCTTACGGG 57.107 55.000 0.00 0.00 35.41 5.28
5779 8016 0.251073 TTACGGGGCTAGTCCTTTGC 59.749 55.000 14.34 0.00 34.39 3.68
5780 8017 0.905809 TACGGGGCTAGTCCTTTGCA 60.906 55.000 14.34 0.00 34.39 4.08
5810 8047 0.320771 GCTGGTCTCATCGTTGGTGT 60.321 55.000 0.00 0.00 0.00 4.16
5836 8073 6.537301 GTGAAACGAAAGATGATGGTACCATA 59.463 38.462 27.42 15.53 36.70 2.74
5870 8110 2.038952 CTCCCACCATCACTTGAAGACA 59.961 50.000 0.00 0.00 0.00 3.41
5873 8113 3.192001 CCCACCATCACTTGAAGACATTG 59.808 47.826 0.00 0.00 0.00 2.82
5893 8133 1.904287 CTATCGGTCCTCTCCCAGAG 58.096 60.000 0.00 0.00 41.96 3.35
5929 8169 0.987294 CTCCTCAAGGCCTTCTCCAA 59.013 55.000 17.29 0.00 34.44 3.53
5932 8172 1.074566 CCTCAAGGCCTTCTCCAACTT 59.925 52.381 17.29 0.00 0.00 2.66
5964 8204 5.197682 AGTCTACGTAATAGCCCATGTTC 57.802 43.478 0.00 0.00 0.00 3.18
6069 8309 0.252467 CAGTTCCTCACCTCCCTCCT 60.252 60.000 0.00 0.00 0.00 3.69
6095 8335 4.279420 GCTTGAATATTGAGATGAACCCCC 59.721 45.833 0.00 0.00 0.00 5.40
6142 8382 1.509923 GCAGGAGCAAGAACATGGC 59.490 57.895 0.00 0.00 41.58 4.40
6143 8383 1.246056 GCAGGAGCAAGAACATGGCA 61.246 55.000 0.00 0.00 41.58 4.92
6157 8397 3.592059 ACATGGCAGCAATCAAATTCAC 58.408 40.909 0.00 0.00 0.00 3.18
6169 8409 2.108075 TCAAATTCACCTGCTTCCTCCA 59.892 45.455 0.00 0.00 0.00 3.86
6208 8448 2.731691 TTTGGGCTCTCACGGACAGC 62.732 60.000 0.00 0.00 0.00 4.40
6209 8449 3.695606 GGGCTCTCACGGACAGCA 61.696 66.667 4.22 0.00 0.00 4.41
6229 8469 3.434739 GCATCCAATCCCATCTTCTGTCT 60.435 47.826 0.00 0.00 0.00 3.41
6255 8495 4.272489 CTTCCTGCCATCACCAAATTAGA 58.728 43.478 0.00 0.00 0.00 2.10
6314 8554 0.901114 ATGCTGCATGGCACTGGAAA 60.901 50.000 15.44 0.00 45.36 3.13
6336 8576 1.200020 GTTGGAAATTGGAGACTGCGG 59.800 52.381 0.00 0.00 0.00 5.69
6356 8596 0.755079 CTCCCTTGCATCCATCGAGA 59.245 55.000 0.00 0.00 0.00 4.04
6362 8602 1.044790 TGCATCCATCGAGAGCCTCA 61.045 55.000 0.00 0.00 0.00 3.86
6368 8608 1.205655 CCATCGAGAGCCTCAAGTTCA 59.794 52.381 0.00 0.00 0.00 3.18
6369 8609 2.266554 CATCGAGAGCCTCAAGTTCAC 58.733 52.381 0.00 0.00 0.00 3.18
6397 8637 7.391833 AGAAACCTGACATCCTTGAAAGTATTC 59.608 37.037 0.00 0.00 36.04 1.75
6399 8639 6.176183 ACCTGACATCCTTGAAAGTATTCAG 58.824 40.000 0.00 0.00 45.82 3.02
6440 8680 0.592637 TTTGGAGCTTGTGTCGCATG 59.407 50.000 0.00 0.00 0.00 4.06
6442 8682 0.950555 TGGAGCTTGTGTCGCATGAC 60.951 55.000 0.00 0.00 45.71 3.06
6444 8684 1.959899 GAGCTTGTGTCGCATGACCG 61.960 60.000 0.00 0.00 44.86 4.79
6455 8695 1.457643 CATGACCGAGGGGCCTCTA 60.458 63.158 4.16 0.00 40.69 2.43
6472 8712 4.690261 GCCTCTAAGATCTGGTCTGGACTA 60.690 50.000 0.00 0.00 37.23 2.59
6527 8770 0.680618 CCATGCCCTTCTGCAAACAA 59.319 50.000 0.00 0.00 45.84 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.362736 TCACTTGGCGTATAGAGACGT 58.637 47.619 0.00 0.00 44.74 4.34
4 5 5.810587 TGAAAATCACTTGGCGTATAGAGAC 59.189 40.000 0.00 0.00 0.00 3.36
5 6 5.972935 TGAAAATCACTTGGCGTATAGAGA 58.027 37.500 0.00 0.00 0.00 3.10
6 7 6.662414 TTGAAAATCACTTGGCGTATAGAG 57.338 37.500 0.00 0.00 0.00 2.43
7 8 8.725405 TTATTGAAAATCACTTGGCGTATAGA 57.275 30.769 0.00 0.00 0.00 1.98
8 9 9.385902 CATTATTGAAAATCACTTGGCGTATAG 57.614 33.333 0.00 0.00 0.00 1.31
9 10 9.114952 TCATTATTGAAAATCACTTGGCGTATA 57.885 29.630 0.00 0.00 0.00 1.47
10 11 7.995289 TCATTATTGAAAATCACTTGGCGTAT 58.005 30.769 0.00 0.00 0.00 3.06
11 12 7.335673 TCTCATTATTGAAAATCACTTGGCGTA 59.664 33.333 0.00 0.00 0.00 4.42
12 13 6.150976 TCTCATTATTGAAAATCACTTGGCGT 59.849 34.615 0.00 0.00 0.00 5.68
13 14 6.470235 GTCTCATTATTGAAAATCACTTGGCG 59.530 38.462 0.00 0.00 0.00 5.69
14 15 6.470235 CGTCTCATTATTGAAAATCACTTGGC 59.530 38.462 0.00 0.00 0.00 4.52
15 16 7.530010 ACGTCTCATTATTGAAAATCACTTGG 58.470 34.615 0.00 0.00 0.00 3.61
16 17 9.694520 CTACGTCTCATTATTGAAAATCACTTG 57.305 33.333 0.00 0.00 0.00 3.16
17 18 9.653287 TCTACGTCTCATTATTGAAAATCACTT 57.347 29.630 0.00 0.00 0.00 3.16
18 19 9.823647 ATCTACGTCTCATTATTGAAAATCACT 57.176 29.630 0.00 0.00 0.00 3.41
25 26 8.752254 CGCTTTTATCTACGTCTCATTATTGAA 58.248 33.333 0.00 0.00 0.00 2.69
26 27 7.919091 ACGCTTTTATCTACGTCTCATTATTGA 59.081 33.333 0.00 0.00 32.37 2.57
27 28 8.062231 ACGCTTTTATCTACGTCTCATTATTG 57.938 34.615 0.00 0.00 32.37 1.90
37 38 6.715344 TTGATTTGACGCTTTTATCTACGT 57.285 33.333 0.00 0.00 42.27 3.57
38 39 8.355806 GTTTTTGATTTGACGCTTTTATCTACG 58.644 33.333 0.00 0.00 0.00 3.51
39 40 8.355806 CGTTTTTGATTTGACGCTTTTATCTAC 58.644 33.333 0.00 0.00 0.00 2.59
40 41 8.071368 ACGTTTTTGATTTGACGCTTTTATCTA 58.929 29.630 0.00 0.00 38.97 1.98
41 42 6.915843 ACGTTTTTGATTTGACGCTTTTATCT 59.084 30.769 0.00 0.00 38.97 1.98
42 43 7.089249 ACGTTTTTGATTTGACGCTTTTATC 57.911 32.000 0.00 0.00 38.97 1.75
43 44 6.915843 AGACGTTTTTGATTTGACGCTTTTAT 59.084 30.769 0.00 0.00 38.97 1.40
44 45 6.259638 AGACGTTTTTGATTTGACGCTTTTA 58.740 32.000 0.00 0.00 38.97 1.52
45 46 5.099575 AGACGTTTTTGATTTGACGCTTTT 58.900 33.333 0.00 0.00 38.97 2.27
46 47 4.668289 AGACGTTTTTGATTTGACGCTTT 58.332 34.783 0.00 0.00 38.97 3.51
47 48 4.035208 AGAGACGTTTTTGATTTGACGCTT 59.965 37.500 0.00 0.00 38.97 4.68
48 49 3.560068 AGAGACGTTTTTGATTTGACGCT 59.440 39.130 0.00 0.00 38.97 5.07
49 50 3.873529 AGAGACGTTTTTGATTTGACGC 58.126 40.909 0.00 0.00 38.97 5.19
50 51 5.969741 TGTAGAGACGTTTTTGATTTGACG 58.030 37.500 0.00 0.00 41.00 4.35
51 52 7.352739 ACATGTAGAGACGTTTTTGATTTGAC 58.647 34.615 0.00 0.00 0.00 3.18
52 53 7.441157 AGACATGTAGAGACGTTTTTGATTTGA 59.559 33.333 0.00 0.00 0.00 2.69
53 54 7.576236 AGACATGTAGAGACGTTTTTGATTTG 58.424 34.615 0.00 0.00 0.00 2.32
54 55 7.730364 AGACATGTAGAGACGTTTTTGATTT 57.270 32.000 0.00 0.00 0.00 2.17
55 56 9.436957 AATAGACATGTAGAGACGTTTTTGATT 57.563 29.630 0.00 0.00 0.00 2.57
56 57 9.436957 AAATAGACATGTAGAGACGTTTTTGAT 57.563 29.630 0.00 0.00 0.00 2.57
57 58 8.827177 AAATAGACATGTAGAGACGTTTTTGA 57.173 30.769 0.00 0.00 0.00 2.69
58 59 9.318041 CAAAATAGACATGTAGAGACGTTTTTG 57.682 33.333 0.00 4.80 0.00 2.44
59 60 9.052759 ACAAAATAGACATGTAGAGACGTTTTT 57.947 29.630 0.00 0.00 0.00 1.94
60 61 8.603242 ACAAAATAGACATGTAGAGACGTTTT 57.397 30.769 0.00 0.00 0.00 2.43
61 62 8.495949 CAACAAAATAGACATGTAGAGACGTTT 58.504 33.333 0.00 0.00 0.00 3.60
62 63 7.656137 ACAACAAAATAGACATGTAGAGACGTT 59.344 33.333 0.00 0.00 0.00 3.99
63 64 7.152645 ACAACAAAATAGACATGTAGAGACGT 58.847 34.615 0.00 0.00 0.00 4.34
64 65 7.582435 ACAACAAAATAGACATGTAGAGACG 57.418 36.000 0.00 0.00 0.00 4.18
65 66 9.640963 ACTACAACAAAATAGACATGTAGAGAC 57.359 33.333 15.37 0.00 41.57 3.36
66 67 9.639601 CACTACAACAAAATAGACATGTAGAGA 57.360 33.333 15.37 0.00 41.57 3.10
67 68 8.383619 GCACTACAACAAAATAGACATGTAGAG 58.616 37.037 15.37 9.81 41.57 2.43
68 69 7.333423 GGCACTACAACAAAATAGACATGTAGA 59.667 37.037 15.37 0.00 41.57 2.59
69 70 7.414098 GGGCACTACAACAAAATAGACATGTAG 60.414 40.741 0.00 8.70 43.53 2.74
70 71 6.373216 GGGCACTACAACAAAATAGACATGTA 59.627 38.462 0.00 0.00 0.00 2.29
71 72 5.183140 GGGCACTACAACAAAATAGACATGT 59.817 40.000 0.00 0.00 0.00 3.21
72 73 5.393027 GGGGCACTACAACAAAATAGACATG 60.393 44.000 0.00 0.00 0.00 3.21
73 74 4.705023 GGGGCACTACAACAAAATAGACAT 59.295 41.667 0.00 0.00 0.00 3.06
74 75 4.076394 GGGGCACTACAACAAAATAGACA 58.924 43.478 0.00 0.00 0.00 3.41
75 76 3.442625 GGGGGCACTACAACAAAATAGAC 59.557 47.826 0.00 0.00 0.00 2.59
76 77 3.332485 AGGGGGCACTACAACAAAATAGA 59.668 43.478 0.00 0.00 0.00 1.98
77 78 3.694566 GAGGGGGCACTACAACAAAATAG 59.305 47.826 0.00 0.00 0.00 1.73
78 79 3.332485 AGAGGGGGCACTACAACAAAATA 59.668 43.478 0.00 0.00 0.00 1.40
79 80 2.110011 AGAGGGGGCACTACAACAAAAT 59.890 45.455 0.00 0.00 0.00 1.82
80 81 1.497286 AGAGGGGGCACTACAACAAAA 59.503 47.619 0.00 0.00 0.00 2.44
81 82 1.073284 GAGAGGGGGCACTACAACAAA 59.927 52.381 0.00 0.00 0.00 2.83
82 83 0.690762 GAGAGGGGGCACTACAACAA 59.309 55.000 0.00 0.00 0.00 2.83
83 84 0.178903 AGAGAGGGGGCACTACAACA 60.179 55.000 0.00 0.00 0.00 3.33
84 85 0.537653 GAGAGAGGGGGCACTACAAC 59.462 60.000 0.00 0.00 0.00 3.32
85 86 0.413832 AGAGAGAGGGGGCACTACAA 59.586 55.000 0.00 0.00 0.00 2.41
86 87 0.033011 GAGAGAGAGGGGGCACTACA 60.033 60.000 0.00 0.00 0.00 2.74
87 88 0.260523 AGAGAGAGAGGGGGCACTAC 59.739 60.000 0.00 0.00 0.00 2.73
88 89 0.553819 GAGAGAGAGAGGGGGCACTA 59.446 60.000 0.00 0.00 0.00 2.74
89 90 1.221213 AGAGAGAGAGAGGGGGCACT 61.221 60.000 0.00 0.00 0.00 4.40
90 91 0.325203 AAGAGAGAGAGAGGGGGCAC 60.325 60.000 0.00 0.00 0.00 5.01
91 92 0.415429 AAAGAGAGAGAGAGGGGGCA 59.585 55.000 0.00 0.00 0.00 5.36
92 93 0.829990 CAAAGAGAGAGAGAGGGGGC 59.170 60.000 0.00 0.00 0.00 5.80
93 94 2.246091 ACAAAGAGAGAGAGAGGGGG 57.754 55.000 0.00 0.00 0.00 5.40
94 95 6.434028 CAGATATACAAAGAGAGAGAGAGGGG 59.566 46.154 0.00 0.00 0.00 4.79
95 96 7.004086 ACAGATATACAAAGAGAGAGAGAGGG 58.996 42.308 0.00 0.00 0.00 4.30
96 97 8.463930 AACAGATATACAAAGAGAGAGAGAGG 57.536 38.462 0.00 0.00 0.00 3.69
97 98 9.119418 TGAACAGATATACAAAGAGAGAGAGAG 57.881 37.037 0.00 0.00 0.00 3.20
98 99 8.898761 GTGAACAGATATACAAAGAGAGAGAGA 58.101 37.037 0.00 0.00 0.00 3.10
99 100 8.902806 AGTGAACAGATATACAAAGAGAGAGAG 58.097 37.037 0.00 0.00 0.00 3.20
100 101 8.815565 AGTGAACAGATATACAAAGAGAGAGA 57.184 34.615 0.00 0.00 0.00 3.10
101 102 8.902806 AGAGTGAACAGATATACAAAGAGAGAG 58.097 37.037 0.00 0.00 0.00 3.20
102 103 8.681806 CAGAGTGAACAGATATACAAAGAGAGA 58.318 37.037 0.00 0.00 0.00 3.10
103 104 7.920151 CCAGAGTGAACAGATATACAAAGAGAG 59.080 40.741 0.00 0.00 0.00 3.20
104 105 7.147828 CCCAGAGTGAACAGATATACAAAGAGA 60.148 40.741 0.00 0.00 0.00 3.10
105 106 6.983307 CCCAGAGTGAACAGATATACAAAGAG 59.017 42.308 0.00 0.00 0.00 2.85
106 107 6.630413 GCCCAGAGTGAACAGATATACAAAGA 60.630 42.308 0.00 0.00 0.00 2.52
107 108 5.525378 GCCCAGAGTGAACAGATATACAAAG 59.475 44.000 0.00 0.00 0.00 2.77
108 109 5.428253 GCCCAGAGTGAACAGATATACAAA 58.572 41.667 0.00 0.00 0.00 2.83
109 110 4.141711 GGCCCAGAGTGAACAGATATACAA 60.142 45.833 0.00 0.00 0.00 2.41
110 111 3.388024 GGCCCAGAGTGAACAGATATACA 59.612 47.826 0.00 0.00 0.00 2.29
111 112 3.643792 AGGCCCAGAGTGAACAGATATAC 59.356 47.826 0.00 0.00 0.00 1.47
112 113 3.898123 GAGGCCCAGAGTGAACAGATATA 59.102 47.826 0.00 0.00 0.00 0.86
113 114 2.703007 GAGGCCCAGAGTGAACAGATAT 59.297 50.000 0.00 0.00 0.00 1.63
114 115 2.111384 GAGGCCCAGAGTGAACAGATA 58.889 52.381 0.00 0.00 0.00 1.98
115 116 0.908198 GAGGCCCAGAGTGAACAGAT 59.092 55.000 0.00 0.00 0.00 2.90
116 117 1.536073 CGAGGCCCAGAGTGAACAGA 61.536 60.000 0.00 0.00 0.00 3.41
117 118 1.079543 CGAGGCCCAGAGTGAACAG 60.080 63.158 0.00 0.00 0.00 3.16
118 119 2.583441 CCGAGGCCCAGAGTGAACA 61.583 63.158 0.00 0.00 0.00 3.18
119 120 2.266055 CCGAGGCCCAGAGTGAAC 59.734 66.667 0.00 0.00 0.00 3.18
120 121 2.203788 ACCGAGGCCCAGAGTGAA 60.204 61.111 0.00 0.00 0.00 3.18
121 122 2.680352 GACCGAGGCCCAGAGTGA 60.680 66.667 0.00 0.00 0.00 3.41
122 123 3.775654 GGACCGAGGCCCAGAGTG 61.776 72.222 0.00 0.00 0.00 3.51
123 124 3.625632 ATGGACCGAGGCCCAGAGT 62.626 63.158 0.00 0.00 35.67 3.24
124 125 1.915078 AAATGGACCGAGGCCCAGAG 61.915 60.000 0.00 0.00 35.67 3.35
125 126 1.497309 AAAATGGACCGAGGCCCAGA 61.497 55.000 0.00 0.00 35.67 3.86
126 127 0.611896 AAAAATGGACCGAGGCCCAG 60.612 55.000 0.00 0.00 35.67 4.45
127 128 1.462928 AAAAATGGACCGAGGCCCA 59.537 52.632 0.00 0.00 36.79 5.36
128 129 4.434483 AAAAATGGACCGAGGCCC 57.566 55.556 0.00 0.00 0.00 5.80
324 325 3.973206 TGTACAGCCTTTTAGCTAGCA 57.027 42.857 18.83 0.00 42.61 3.49
338 339 6.018994 GCTTTGGTTCCGATAAGTATGTACAG 60.019 42.308 0.33 0.00 0.00 2.74
464 472 1.153005 GCAGCCTGGAATCTCTGGG 60.153 63.158 0.00 0.00 0.00 4.45
511 519 1.902508 TGGTAACTGAGCCCAGAGAAG 59.097 52.381 0.65 0.00 43.02 2.85
624 633 2.917713 AATGGTGTATTTGGCTGGGA 57.082 45.000 0.00 0.00 0.00 4.37
650 659 1.009829 GTCTTGAGCCCATAGTTGCG 58.990 55.000 0.00 0.00 0.00 4.85
739 750 8.092687 ACTAACGCTAGAATTCCTTTAACTGAA 58.907 33.333 0.65 0.00 0.00 3.02
751 762 4.259356 GTTCCCCAACTAACGCTAGAATT 58.741 43.478 0.00 0.00 0.00 2.17
774 785 5.376854 AACTATGCACCAAAAACAGCTAG 57.623 39.130 0.00 0.00 0.00 3.42
876 890 5.294306 AGCTCATGATGTTAACATACCAACG 59.706 40.000 20.83 11.09 36.57 4.10
949 964 3.307339 TGTATGGCTGTGCAATACACTCA 60.307 43.478 13.82 0.00 44.98 3.41
965 987 8.617809 GGTGTATTTGGTTGTATACTTGTATGG 58.382 37.037 4.17 0.00 0.00 2.74
1054 1076 2.002505 AGGATGATAGGGTCTCCACG 57.997 55.000 0.00 0.00 34.83 4.94
1090 1112 1.671054 GCACCGAAACCAGCTAGCA 60.671 57.895 18.83 0.00 0.00 3.49
1103 1125 5.000012 AGAGAGAGTTAAACTATGCACCG 58.000 43.478 0.00 0.00 0.00 4.94
1127 1152 1.466851 AAGCAAGGGAGGCAGCAAAC 61.467 55.000 0.00 0.00 0.00 2.93
1138 1165 2.575805 AGGAAGACAGAAAGCAAGGG 57.424 50.000 0.00 0.00 0.00 3.95
1157 1188 8.593945 AATAATGCATCAAAAGGAAGGAACTA 57.406 30.769 0.00 0.00 38.49 2.24
1258 1294 1.617755 CGCACACCTAAGACAGCACG 61.618 60.000 0.00 0.00 0.00 5.34
1265 1301 0.039180 TCTCTCCCGCACACCTAAGA 59.961 55.000 0.00 0.00 0.00 2.10
1351 1397 5.762179 TTCCATATGTCCAGTGAAGAAGT 57.238 39.130 1.24 0.00 0.00 3.01
1374 1420 2.722094 CCCAATTTCACGAATCCAGGA 58.278 47.619 0.00 0.00 0.00 3.86
1381 1427 0.316841 GGCAAGCCCAATTTCACGAA 59.683 50.000 0.00 0.00 0.00 3.85
1400 1446 6.428385 AATTTAAGCTTCTCCACATCTTCG 57.572 37.500 0.00 0.00 0.00 3.79
1418 1464 5.483811 TGCACGTACCTCATCTGAAATTTA 58.516 37.500 0.00 0.00 0.00 1.40
1603 1652 5.221441 GGAAGCAACCAAAATAGAACAGGTT 60.221 40.000 0.00 0.00 42.94 3.50
1604 1653 4.280929 GGAAGCAACCAAAATAGAACAGGT 59.719 41.667 0.00 0.00 0.00 4.00
1626 1675 4.442706 ACACACCGATATAAAGAAGCTGG 58.557 43.478 0.00 0.00 0.00 4.85
1643 1693 1.937899 AGGTAGCGTTCACAAACACAC 59.062 47.619 0.00 0.00 34.93 3.82
1648 1698 1.588674 CACCAGGTAGCGTTCACAAA 58.411 50.000 0.00 0.00 0.00 2.83
1657 1707 1.038280 ACTATACGCCACCAGGTAGC 58.962 55.000 0.00 0.00 37.19 3.58
1662 1712 8.706035 GTTACATATTAAACTATACGCCACCAG 58.294 37.037 0.00 0.00 0.00 4.00
1664 1714 7.656948 TGGTTACATATTAAACTATACGCCACC 59.343 37.037 0.00 0.00 0.00 4.61
1665 1715 8.592105 TGGTTACATATTAAACTATACGCCAC 57.408 34.615 0.00 0.00 0.00 5.01
1677 3732 6.649155 TCAGCTGCTCTTGGTTACATATTAA 58.351 36.000 9.47 0.00 0.00 1.40
1715 3799 1.902508 CAAGAGTTAGTCTGAGGGGCA 59.097 52.381 0.00 0.00 34.84 5.36
1777 3865 3.693085 TCTCTACCTTTAGCGTCGACAAT 59.307 43.478 17.16 5.51 0.00 2.71
1780 3868 3.967203 ATCTCTACCTTTAGCGTCGAC 57.033 47.619 5.18 5.18 0.00 4.20
1781 3869 3.812053 GGTATCTCTACCTTTAGCGTCGA 59.188 47.826 0.00 0.00 43.62 4.20
1866 4046 8.996988 TCAGTTATTTTAGTACAAGCAAAACG 57.003 30.769 0.00 0.00 0.00 3.60
1892 4073 5.147767 ACCTTTCCCTGCATAAGAAAACTT 58.852 37.500 7.19 0.00 0.00 2.66
2019 4206 1.179152 TCTACCGCGTGAGATCCAAA 58.821 50.000 4.92 0.00 0.00 3.28
2386 4576 9.539825 CTTTCATCATGGTATACATATCTAGCC 57.460 37.037 5.01 0.00 37.84 3.93
2477 4667 7.108194 ACATGCTCTAAGATCTCAATTGTCAA 58.892 34.615 5.13 0.00 0.00 3.18
2899 5097 2.241722 CTTATGTTCAAAAGTGCGCCG 58.758 47.619 4.18 0.00 0.00 6.46
2916 5114 5.666462 TCCAATGCTTATCGCTAACACTTA 58.334 37.500 0.00 0.00 40.11 2.24
3025 5227 5.465390 CGAGAAACAATGTTGAAGGTAGACA 59.535 40.000 0.00 0.00 0.00 3.41
3059 5261 7.885297 TCAAATTGTTTGTCCTCTGGAAATAG 58.115 34.615 2.74 0.00 41.36 1.73
3369 5571 8.405531 CAAACTTCTCAATAGGAAAACTGTCAA 58.594 33.333 0.00 0.00 0.00 3.18
3424 5629 8.181904 ACAACATCAAAGTCCTCAATTTATGT 57.818 30.769 0.00 0.00 0.00 2.29
3427 5632 7.925483 CCAAACAACATCAAAGTCCTCAATTTA 59.075 33.333 0.00 0.00 0.00 1.40
3561 5766 8.877864 AAGATGGTATGGATTTAACAAACTGA 57.122 30.769 0.00 0.00 0.00 3.41
3644 5849 4.044426 GCTTGAGGAAACACATTGTTGTC 58.956 43.478 0.00 0.00 40.14 3.18
3651 5862 3.890756 TGTCAATGCTTGAGGAAACACAT 59.109 39.130 0.00 0.00 41.01 3.21
3722 5939 2.916702 TGCATATCAGTAGGCACAGG 57.083 50.000 0.00 0.00 42.14 4.00
3811 6028 6.494952 ACTTAGTTCCTGAAGAGAGGTCATA 58.505 40.000 0.00 0.00 34.36 2.15
3931 6148 2.094182 CGCACTGGCCTCTTCTTTAGTA 60.094 50.000 3.32 0.00 36.38 1.82
3958 6175 7.918562 GCTTCTAGATACTCTTTGTCTAACAGG 59.081 40.741 0.00 0.00 0.00 4.00
3983 6200 1.747355 CTCCCATGACAAGGACAATGC 59.253 52.381 0.00 0.00 0.00 3.56
4096 6313 1.514553 GGAGGTAGCACCACCGTAC 59.485 63.158 3.28 0.00 39.19 3.67
4144 6361 2.959516 TGAAGTGTCCGCAGTAAGATG 58.040 47.619 0.00 0.00 0.00 2.90
4146 6363 2.826128 AGATGAAGTGTCCGCAGTAAGA 59.174 45.455 0.00 0.00 0.00 2.10
4256 6473 5.072741 CAAGGAAGGAACTGAGATTTCCAA 58.927 41.667 4.87 0.00 44.51 3.53
4352 6569 9.710900 GTTCTTGATCATCAAAACCCTTAAATT 57.289 29.630 0.75 0.00 35.73 1.82
4588 6807 2.173569 CCATTTCCCCTAGTGGAAGGAG 59.826 54.545 6.78 1.91 44.87 3.69
4602 6821 2.362375 TTGAGCGCCCCCATTTCC 60.362 61.111 2.29 0.00 0.00 3.13
4647 6866 1.734465 GGAACTGCCAATTCTCTCACG 59.266 52.381 0.00 0.00 36.34 4.35
4815 7034 3.585862 GTGCGACACTATCAAAGAAGGA 58.414 45.455 3.20 0.00 0.00 3.36
4858 7077 3.507622 CCCCTCATGGAAAACTCAGAAAC 59.492 47.826 0.00 0.00 35.39 2.78
4869 7088 1.060729 TCGAAACACCCCTCATGGAA 58.939 50.000 0.00 0.00 35.39 3.53
4881 7100 3.942115 TCATTGTTGGAAGTGTCGAAACA 59.058 39.130 8.78 0.10 32.27 2.83
4914 7133 4.882671 AGATTCGATTTTGAACCATCCG 57.117 40.909 0.00 0.00 0.00 4.18
4915 7134 7.707104 ACATTAGATTCGATTTTGAACCATCC 58.293 34.615 0.00 0.00 0.00 3.51
4940 7159 9.355916 AGATACTGTTATCTAGCACACTCAATA 57.644 33.333 0.00 0.00 42.39 1.90
4984 7203 2.469516 GCAACCGTCTTATGCCCCG 61.470 63.158 0.00 0.00 34.03 5.73
4997 7216 2.414161 GGACAGTTTTCTATGCGCAACC 60.414 50.000 17.11 0.00 0.00 3.77
5067 7286 5.524281 GCAGTCCTTTATAACTAAGTGCTCC 59.476 44.000 10.55 0.00 0.00 4.70
5083 7302 2.839228 AGTCAGATTAGGGCAGTCCTT 58.161 47.619 0.00 0.00 45.47 3.36
5177 7399 5.448225 CCACATGTGCTAATGTTGACAGATC 60.448 44.000 20.81 0.00 38.75 2.75
5205 7427 1.573857 TGAGATAGCCACCTCCCAGTA 59.426 52.381 0.00 0.00 0.00 2.74
5281 7512 8.254508 AGGTTGACTGATAGATAGAAACTTCAC 58.745 37.037 0.00 0.00 0.00 3.18
5283 7514 9.738832 GTAGGTTGACTGATAGATAGAAACTTC 57.261 37.037 0.00 0.00 0.00 3.01
5295 7526 4.768448 TCCGTTTCTGTAGGTTGACTGATA 59.232 41.667 0.00 0.00 0.00 2.15
5334 7565 0.982704 AGGTCATCACTGCTGAAGCT 59.017 50.000 3.61 0.00 42.66 3.74
5412 7649 2.034305 CAGGCTTTGCTGAATCCATAGC 59.966 50.000 0.00 0.00 40.29 2.97
5413 7650 2.621998 CCAGGCTTTGCTGAATCCATAG 59.378 50.000 0.00 0.00 0.00 2.23
5414 7651 2.241941 TCCAGGCTTTGCTGAATCCATA 59.758 45.455 0.00 0.00 0.00 2.74
5415 7652 1.006281 TCCAGGCTTTGCTGAATCCAT 59.994 47.619 0.00 0.00 0.00 3.41
5416 7653 0.405198 TCCAGGCTTTGCTGAATCCA 59.595 50.000 0.00 0.00 0.00 3.41
5417 7654 1.680207 GATCCAGGCTTTGCTGAATCC 59.320 52.381 0.00 0.00 0.00 3.01
5418 7655 2.358267 CAGATCCAGGCTTTGCTGAATC 59.642 50.000 0.00 0.00 0.00 2.52
5419 7656 2.376109 CAGATCCAGGCTTTGCTGAAT 58.624 47.619 0.00 0.00 0.00 2.57
5420 7657 1.615116 CCAGATCCAGGCTTTGCTGAA 60.615 52.381 0.00 0.00 0.00 3.02
5421 7658 0.034767 CCAGATCCAGGCTTTGCTGA 60.035 55.000 0.00 0.00 0.00 4.26
5422 7659 0.034767 TCCAGATCCAGGCTTTGCTG 60.035 55.000 0.00 0.00 0.00 4.41
5423 7660 0.255318 CTCCAGATCCAGGCTTTGCT 59.745 55.000 0.00 0.00 0.00 3.91
5424 7661 0.034670 ACTCCAGATCCAGGCTTTGC 60.035 55.000 0.00 0.00 0.00 3.68
5425 7662 1.407989 GGACTCCAGATCCAGGCTTTG 60.408 57.143 0.00 0.00 36.15 2.77
5426 7663 0.915364 GGACTCCAGATCCAGGCTTT 59.085 55.000 0.00 0.00 36.15 3.51
5427 7664 0.043940 AGGACTCCAGATCCAGGCTT 59.956 55.000 0.00 0.00 38.86 4.35
5428 7665 0.690411 CAGGACTCCAGATCCAGGCT 60.690 60.000 0.00 0.00 38.86 4.58
5429 7666 0.980231 ACAGGACTCCAGATCCAGGC 60.980 60.000 0.00 0.00 38.86 4.85
5430 7667 0.829333 CACAGGACTCCAGATCCAGG 59.171 60.000 0.00 0.00 38.86 4.45
5431 7668 0.829333 CCACAGGACTCCAGATCCAG 59.171 60.000 0.00 0.00 38.86 3.86
5432 7669 0.413434 TCCACAGGACTCCAGATCCA 59.587 55.000 0.00 0.00 38.86 3.41
5433 7670 1.118838 CTCCACAGGACTCCAGATCC 58.881 60.000 0.00 0.00 36.38 3.36
5434 7671 1.118838 CCTCCACAGGACTCCAGATC 58.881 60.000 0.00 0.00 43.65 2.75
5435 7672 0.415429 ACCTCCACAGGACTCCAGAT 59.585 55.000 0.00 0.00 43.65 2.90
5436 7673 1.006043 CTACCTCCACAGGACTCCAGA 59.994 57.143 0.00 0.00 43.65 3.86
5437 7674 1.272760 ACTACCTCCACAGGACTCCAG 60.273 57.143 0.00 0.00 43.65 3.86
5438 7675 0.784495 ACTACCTCCACAGGACTCCA 59.216 55.000 0.00 0.00 43.65 3.86
5439 7676 2.241685 TCTACTACCTCCACAGGACTCC 59.758 54.545 0.00 0.00 43.65 3.85
5440 7677 3.200385 TCTCTACTACCTCCACAGGACTC 59.800 52.174 0.00 0.00 43.65 3.36
5441 7678 3.054213 GTCTCTACTACCTCCACAGGACT 60.054 52.174 0.00 0.00 43.65 3.85
5442 7679 3.054213 AGTCTCTACTACCTCCACAGGAC 60.054 52.174 0.00 0.00 43.91 3.85
5443 7680 3.191273 AGTCTCTACTACCTCCACAGGA 58.809 50.000 0.00 0.00 43.91 3.86
5444 7681 3.655615 AGTCTCTACTACCTCCACAGG 57.344 52.381 0.00 0.00 46.87 4.00
5445 7682 4.396790 GTGAAGTCTCTACTACCTCCACAG 59.603 50.000 0.00 0.00 33.75 3.66
5446 7683 4.202535 TGTGAAGTCTCTACTACCTCCACA 60.203 45.833 0.00 0.00 33.75 4.17
5447 7684 4.333690 TGTGAAGTCTCTACTACCTCCAC 58.666 47.826 0.00 0.00 33.75 4.02
5448 7685 4.567958 CCTGTGAAGTCTCTACTACCTCCA 60.568 50.000 0.00 0.00 33.75 3.86
5449 7686 3.949113 CCTGTGAAGTCTCTACTACCTCC 59.051 52.174 0.00 0.00 33.75 4.30
5450 7687 4.846040 TCCTGTGAAGTCTCTACTACCTC 58.154 47.826 0.00 0.00 33.75 3.85
5451 7688 4.931027 TCCTGTGAAGTCTCTACTACCT 57.069 45.455 0.00 0.00 33.75 3.08
5452 7689 5.652891 TGAATCCTGTGAAGTCTCTACTACC 59.347 44.000 0.00 0.00 33.75 3.18
5453 7690 6.404954 GGTGAATCCTGTGAAGTCTCTACTAC 60.405 46.154 0.00 0.00 33.75 2.73
5454 7691 5.652891 GGTGAATCCTGTGAAGTCTCTACTA 59.347 44.000 0.00 0.00 33.75 1.82
5455 7692 4.464597 GGTGAATCCTGTGAAGTCTCTACT 59.535 45.833 0.00 0.00 37.65 2.57
5456 7693 4.464597 AGGTGAATCCTGTGAAGTCTCTAC 59.535 45.833 0.00 0.00 46.19 2.59
5457 7694 4.678256 AGGTGAATCCTGTGAAGTCTCTA 58.322 43.478 0.00 0.00 46.19 2.43
5458 7695 3.515562 AGGTGAATCCTGTGAAGTCTCT 58.484 45.455 0.00 0.00 46.19 3.10
5459 7696 3.971245 AGGTGAATCCTGTGAAGTCTC 57.029 47.619 0.00 0.00 46.19 3.36
5461 7698 9.898797 CGTAAGAGAGGTGAATCCTGTGAAGTC 62.899 48.148 0.00 0.00 44.48 3.01
5462 7699 8.237204 CGTAAGAGAGGTGAATCCTGTGAAGT 62.237 46.154 0.00 0.00 44.48 3.01
5463 7700 5.905355 CGTAAGAGAGGTGAATCCTGTGAAG 60.905 48.000 0.00 0.00 44.48 3.02
5464 7701 4.082190 CGTAAGAGAGGTGAATCCTGTGAA 60.082 45.833 0.00 0.00 44.48 3.18
5465 7702 3.444034 CGTAAGAGAGGTGAATCCTGTGA 59.556 47.826 0.00 0.00 44.48 3.58
5466 7703 3.429547 CCGTAAGAGAGGTGAATCCTGTG 60.430 52.174 0.00 0.00 44.48 3.66
5467 7704 2.761208 CCGTAAGAGAGGTGAATCCTGT 59.239 50.000 0.00 0.00 44.48 4.00
5468 7705 3.024547 TCCGTAAGAGAGGTGAATCCTG 58.975 50.000 0.00 0.00 44.48 3.86
5469 7706 3.292460 CTCCGTAAGAGAGGTGAATCCT 58.708 50.000 0.00 0.00 46.50 3.24
5470 7707 2.362717 CCTCCGTAAGAGAGGTGAATCC 59.637 54.545 0.00 0.00 46.50 3.01
5471 7708 3.719173 CCTCCGTAAGAGAGGTGAATC 57.281 52.381 0.00 0.00 46.50 2.52
5478 7715 2.054232 TAGCCACCTCCGTAAGAGAG 57.946 55.000 0.00 0.00 46.50 3.20
5479 7716 2.097825 GTTAGCCACCTCCGTAAGAGA 58.902 52.381 0.00 0.00 46.50 3.10
5480 7717 1.822990 TGTTAGCCACCTCCGTAAGAG 59.177 52.381 0.00 0.00 42.83 2.85
5481 7718 1.547372 GTGTTAGCCACCTCCGTAAGA 59.453 52.381 0.00 0.00 38.18 2.10
5482 7719 1.274167 TGTGTTAGCCACCTCCGTAAG 59.726 52.381 0.00 0.00 43.85 2.34
5483 7720 1.340088 TGTGTTAGCCACCTCCGTAA 58.660 50.000 0.00 0.00 43.85 3.18
5484 7721 1.340088 TTGTGTTAGCCACCTCCGTA 58.660 50.000 0.00 0.00 43.85 4.02
5485 7722 0.470766 TTTGTGTTAGCCACCTCCGT 59.529 50.000 0.00 0.00 43.85 4.69
5486 7723 1.468520 CATTTGTGTTAGCCACCTCCG 59.531 52.381 0.00 0.00 43.85 4.63
5498 7735 3.052036 GCGAATGTGAAAGCATTTGTGT 58.948 40.909 7.57 0.00 39.27 3.72
5500 7737 3.367992 TGCGAATGTGAAAGCATTTGT 57.632 38.095 7.57 0.00 39.27 2.83
5504 7741 2.159198 GGGATTGCGAATGTGAAAGCAT 60.159 45.455 0.00 0.00 39.50 3.79
5521 7758 1.366319 ACAGCAACTCCTCAAGGGAT 58.634 50.000 0.00 0.00 44.15 3.85
5543 7780 7.506114 AGAAACTTTATCTGTGGACAGTTACA 58.494 34.615 6.68 0.00 44.12 2.41
5544 7781 7.964604 AGAAACTTTATCTGTGGACAGTTAC 57.035 36.000 6.68 0.00 44.12 2.50
5623 7860 3.173953 TCATCTTGGGCAAAGGTCATT 57.826 42.857 0.88 0.00 36.46 2.57
5631 7868 4.527427 TCAATTCATGTTCATCTTGGGCAA 59.473 37.500 0.00 0.00 0.00 4.52
5632 7869 4.087907 TCAATTCATGTTCATCTTGGGCA 58.912 39.130 0.00 0.00 0.00 5.36
5665 7902 5.568685 TCTTGAGAGAACGTAGGAGATTG 57.431 43.478 0.00 0.00 0.00 2.67
5675 7912 6.813649 TGAATCCATAACTTCTTGAGAGAACG 59.186 38.462 0.00 0.00 36.99 3.95
5706 7943 1.905215 CACAGAACTCCAGATCCAGGT 59.095 52.381 2.06 0.00 0.00 4.00
5728 7965 4.931027 TCCTGTGAAGTCTCTACTACCT 57.069 45.455 0.00 0.00 33.75 3.08
5766 8003 0.523519 GCAACTGCAAAGGACTAGCC 59.476 55.000 0.00 0.00 41.59 3.93
5779 8016 2.203538 ACCAGCTTGGGGCAACTG 60.204 61.111 7.06 0.00 43.37 3.16
5780 8017 2.116125 GACCAGCTTGGGGCAACT 59.884 61.111 7.06 0.00 43.37 3.16
5810 8047 4.693566 GGTACCATCATCTTTCGTTTCACA 59.306 41.667 7.15 0.00 0.00 3.58
5836 8073 1.272147 GGTGGGAGCAATCCAACTTCT 60.272 52.381 1.96 0.00 38.86 2.85
5870 8110 1.343069 GGGAGAGGACCGATAGCAAT 58.657 55.000 0.00 0.00 0.00 3.56
5873 8113 0.178987 TCTGGGAGAGGACCGATAGC 60.179 60.000 0.00 0.00 0.00 2.97
5932 8172 9.586435 GGGCTATTACGTAGACTTAACTTTTTA 57.414 33.333 0.00 0.00 38.59 1.52
5964 8204 2.001812 ATGCAGCTGTACAGACTTCG 57.998 50.000 27.08 12.26 0.00 3.79
6069 8309 6.772716 GGGGTTCATCTCAATATTCAAGCTTA 59.227 38.462 0.00 0.00 0.00 3.09
6095 8335 0.035725 TCCCATGCAGAAGACAGCTG 60.036 55.000 13.48 13.48 36.47 4.24
6139 8379 2.028839 CAGGTGAATTTGATTGCTGCCA 60.029 45.455 0.00 0.00 0.00 4.92
6142 8382 3.587797 AGCAGGTGAATTTGATTGCTG 57.412 42.857 7.41 0.00 40.11 4.41
6143 8383 3.056322 GGAAGCAGGTGAATTTGATTGCT 60.056 43.478 3.53 3.53 43.13 3.91
6157 8397 1.280133 TCAAGTGATGGAGGAAGCAGG 59.720 52.381 0.00 0.00 0.00 4.85
6169 8409 7.363268 GCCCAAATCTCAAGTTTATCAAGTGAT 60.363 37.037 0.00 0.00 38.51 3.06
6208 8448 4.434545 AGACAGAAGATGGGATTGGATG 57.565 45.455 0.00 0.00 0.00 3.51
6209 8449 4.789807 CAAGACAGAAGATGGGATTGGAT 58.210 43.478 0.00 0.00 0.00 3.41
6255 8495 4.660303 TCAATTCTGGACTATGCCATACCT 59.340 41.667 0.00 0.00 37.30 3.08
6303 8543 2.151502 TTCCAACTTTTCCAGTGCCA 57.848 45.000 0.00 0.00 35.12 4.92
6314 8554 2.554032 CGCAGTCTCCAATTTCCAACTT 59.446 45.455 0.00 0.00 0.00 2.66
6336 8576 0.883814 CTCGATGGATGCAAGGGAGC 60.884 60.000 0.00 0.00 0.00 4.70
6340 8580 0.883814 GGCTCTCGATGGATGCAAGG 60.884 60.000 0.00 0.00 0.00 3.61
6356 8596 3.648545 AGGTTTCTAGTGAACTTGAGGCT 59.351 43.478 10.18 0.00 31.02 4.58
6362 8602 5.308237 AGGATGTCAGGTTTCTAGTGAACTT 59.692 40.000 10.18 2.46 31.02 2.66
6368 8608 5.825593 TTCAAGGATGTCAGGTTTCTAGT 57.174 39.130 0.00 0.00 0.00 2.57
6369 8609 6.234177 ACTTTCAAGGATGTCAGGTTTCTAG 58.766 40.000 0.00 0.00 0.00 2.43
6440 8680 0.470268 ATCTTAGAGGCCCCTCGGTC 60.470 60.000 0.00 0.00 46.90 4.79
6442 8682 0.178947 AGATCTTAGAGGCCCCTCGG 60.179 60.000 0.00 4.18 46.90 4.63
6444 8684 1.347062 CCAGATCTTAGAGGCCCCTC 58.653 60.000 0.00 6.20 43.03 4.30
6477 8717 5.366460 AGATGCGTCATCAATCTCAAGATT 58.634 37.500 17.94 0.00 44.93 2.40
6478 8718 4.958509 AGATGCGTCATCAATCTCAAGAT 58.041 39.130 17.94 0.00 42.72 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.