Multiple sequence alignment - TraesCS2B01G484500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G484500 chr2B 100.000 3410 0 0 1 3410 681944368 681940959 0.000000e+00 6298.0
1 TraesCS2B01G484500 chr2B 85.897 78 6 4 514 586 17892615 17892538 1.010000e-10 78.7
2 TraesCS2B01G484500 chr2D 94.751 2172 81 13 653 2803 569153883 569151724 0.000000e+00 3349.0
3 TraesCS2B01G484500 chr2D 94.133 1892 79 15 773 2641 569121324 569119442 0.000000e+00 2850.0
4 TraesCS2B01G484500 chr2D 97.128 592 17 0 2819 3410 569151737 569151146 0.000000e+00 1000.0
5 TraesCS2B01G484500 chr2D 95.819 598 18 3 2819 3410 569091232 569090636 0.000000e+00 959.0
6 TraesCS2B01G484500 chr2D 87.037 162 16 3 651 811 569127485 569127642 9.720000e-41 178.0
7 TraesCS2B01G484500 chr2D 85.714 168 19 5 325 490 11453958 11454122 4.520000e-39 172.0
8 TraesCS2B01G484500 chr2D 92.553 94 7 0 3260 3353 569110614 569110521 5.940000e-28 135.0
9 TraesCS2B01G484500 chr2D 100.000 64 0 0 2740 2803 569091282 569091219 5.980000e-23 119.0
10 TraesCS2B01G484500 chr2D 95.714 70 2 1 2735 2803 569118418 569118349 1.000000e-20 111.0
11 TraesCS2B01G484500 chr2D 92.105 76 5 1 2906 2981 569118326 569118252 4.650000e-19 106.0
12 TraesCS2B01G484500 chr2A 92.919 1949 85 18 860 2803 708862157 708864057 0.000000e+00 2785.0
13 TraesCS2B01G484500 chr2A 91.011 89 6 1 2906 2994 708864079 708864165 5.980000e-23 119.0
14 TraesCS2B01G484500 chr2A 87.037 54 1 5 606 655 21466021 21465970 4.750000e-04 56.5
15 TraesCS2B01G484500 chr7D 84.571 1387 185 19 1022 2404 523057010 523055649 0.000000e+00 1349.0
16 TraesCS2B01G484500 chr7D 84.553 1366 178 24 1022 2381 523133800 523132462 0.000000e+00 1323.0
17 TraesCS2B01G484500 chr7D 82.969 1374 184 27 1022 2385 500773766 500775099 0.000000e+00 1195.0
18 TraesCS2B01G484500 chr7D 78.274 1367 253 29 1023 2376 554321931 554320596 0.000000e+00 839.0
19 TraesCS2B01G484500 chr7D 85.859 198 26 2 1 197 487869209 487869013 3.450000e-50 209.0
20 TraesCS2B01G484500 chr7D 85.057 174 17 6 335 503 587554286 587554117 5.850000e-38 169.0
21 TraesCS2B01G484500 chr7D 84.884 86 8 4 505 585 623691575 623691660 7.840000e-12 82.4
22 TraesCS2B01G484500 chr7D 84.884 86 8 4 505 585 623704321 623704406 7.840000e-12 82.4
23 TraesCS2B01G484500 chr7A 84.510 1388 186 20 1022 2405 603331651 603330289 0.000000e+00 1345.0
24 TraesCS2B01G484500 chr7A 83.346 1363 200 18 1022 2381 603553246 603551908 0.000000e+00 1234.0
25 TraesCS2B01G484500 chr7A 82.542 1369 199 15 1022 2385 566788262 566789595 0.000000e+00 1168.0
26 TraesCS2B01G484500 chr7A 87.372 293 25 10 213 503 658135646 658135928 3.280000e-85 326.0
27 TraesCS2B01G484500 chr7A 86.689 293 26 10 213 503 576959635 576959354 2.550000e-81 313.0
28 TraesCS2B01G484500 chr7B 84.593 1363 183 16 1022 2381 557491593 557490255 0.000000e+00 1328.0
29 TraesCS2B01G484500 chr7B 83.847 1362 192 17 1022 2381 557257419 557256084 0.000000e+00 1271.0
30 TraesCS2B01G484500 chr7B 83.005 1371 188 22 1022 2385 528871662 528872994 0.000000e+00 1199.0
31 TraesCS2B01G484500 chr7B 79.930 284 43 6 1023 1296 600589337 600589616 2.680000e-46 196.0
32 TraesCS2B01G484500 chr3B 97.938 291 5 1 213 503 675631880 675632169 1.410000e-138 503.0
33 TraesCS2B01G484500 chr3B 87.838 296 27 6 213 503 654093977 654093686 4.220000e-89 339.0
34 TraesCS2B01G484500 chr1B 97.611 293 5 2 211 503 683211168 683211458 5.080000e-138 501.0
35 TraesCS2B01G484500 chr1B 93.617 47 2 1 2859 2905 681157999 681157954 6.110000e-08 69.4
36 TraesCS2B01G484500 chr5B 88.851 296 24 6 213 503 711991233 711991524 4.190000e-94 355.0
37 TraesCS2B01G484500 chr5B 88.421 190 22 0 1 190 143298299 143298488 2.650000e-56 230.0
38 TraesCS2B01G484500 chr5B 86.869 198 24 2 1 197 15585001 15584805 1.590000e-53 220.0
39 TraesCS2B01G484500 chr5B 86.802 197 23 2 2 198 659761217 659761410 2.060000e-52 217.0
40 TraesCS2B01G484500 chr5B 95.238 42 2 0 2859 2900 617573787 617573746 2.200000e-07 67.6
41 TraesCS2B01G484500 chr5B 97.059 34 0 1 623 655 621977616 621977583 4.750000e-04 56.5
42 TraesCS2B01G484500 chr5B 87.500 48 5 1 606 652 16730370 16730323 2.000000e-03 54.7
43 TraesCS2B01G484500 chr5D 73.913 966 203 34 1020 1950 543496374 543497325 3.260000e-90 342.0
44 TraesCS2B01G484500 chr5D 86.935 199 22 4 1 197 242952372 242952568 1.590000e-53 220.0
45 TraesCS2B01G484500 chr5D 94.737 57 1 2 514 568 451956700 451956644 1.690000e-13 87.9
46 TraesCS2B01G484500 chr5D 89.394 66 5 2 505 568 497857326 497857391 7.840000e-12 82.4
47 TraesCS2B01G484500 chr5D 84.337 83 7 5 510 586 360752219 360752137 3.650000e-10 76.8
48 TraesCS2B01G484500 chr5D 95.833 48 1 1 2859 2906 498181954 498181908 3.650000e-10 76.8
49 TraesCS2B01G484500 chr3A 86.441 295 28 9 213 503 749183723 749183437 2.550000e-81 313.0
50 TraesCS2B01G484500 chr3A 88.406 69 6 2 505 571 80695216 80695284 7.840000e-12 82.4
51 TraesCS2B01G484500 chr4B 87.629 194 23 1 2 195 69302592 69302400 1.230000e-54 224.0
52 TraesCS2B01G484500 chr1A 86.432 199 23 4 1 197 46271213 46271409 7.410000e-52 215.0
53 TraesCS2B01G484500 chr1A 88.312 77 4 3 514 585 574500944 574500868 1.690000e-13 87.9
54 TraesCS2B01G484500 chr6D 85.427 199 25 4 1 197 407210178 407210374 1.600000e-48 204.0
55 TraesCS2B01G484500 chr5A 85.427 199 25 4 1 197 279742907 279742711 1.600000e-48 204.0
56 TraesCS2B01G484500 chr6A 89.855 69 5 2 505 571 427426919 427426851 1.690000e-13 87.9
57 TraesCS2B01G484500 chr6A 97.143 35 0 1 624 657 140603579 140603613 1.320000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G484500 chr2B 681940959 681944368 3409 True 6298.000000 6298 100.0000 1 3410 1 chr2B.!!$R2 3409
1 TraesCS2B01G484500 chr2D 569151146 569153883 2737 True 2174.500000 3349 95.9395 653 3410 2 chr2D.!!$R4 2757
2 TraesCS2B01G484500 chr2D 569118252 569121324 3072 True 1022.333333 2850 93.9840 773 2981 3 chr2D.!!$R3 2208
3 TraesCS2B01G484500 chr2D 569090636 569091282 646 True 539.000000 959 97.9095 2740 3410 2 chr2D.!!$R2 670
4 TraesCS2B01G484500 chr2A 708862157 708864165 2008 False 1452.000000 2785 91.9650 860 2994 2 chr2A.!!$F1 2134
5 TraesCS2B01G484500 chr7D 523055649 523057010 1361 True 1349.000000 1349 84.5710 1022 2404 1 chr7D.!!$R2 1382
6 TraesCS2B01G484500 chr7D 523132462 523133800 1338 True 1323.000000 1323 84.5530 1022 2381 1 chr7D.!!$R3 1359
7 TraesCS2B01G484500 chr7D 500773766 500775099 1333 False 1195.000000 1195 82.9690 1022 2385 1 chr7D.!!$F1 1363
8 TraesCS2B01G484500 chr7D 554320596 554321931 1335 True 839.000000 839 78.2740 1023 2376 1 chr7D.!!$R4 1353
9 TraesCS2B01G484500 chr7A 603330289 603331651 1362 True 1345.000000 1345 84.5100 1022 2405 1 chr7A.!!$R2 1383
10 TraesCS2B01G484500 chr7A 603551908 603553246 1338 True 1234.000000 1234 83.3460 1022 2381 1 chr7A.!!$R3 1359
11 TraesCS2B01G484500 chr7A 566788262 566789595 1333 False 1168.000000 1168 82.5420 1022 2385 1 chr7A.!!$F1 1363
12 TraesCS2B01G484500 chr7B 557490255 557491593 1338 True 1328.000000 1328 84.5930 1022 2381 1 chr7B.!!$R2 1359
13 TraesCS2B01G484500 chr7B 557256084 557257419 1335 True 1271.000000 1271 83.8470 1022 2381 1 chr7B.!!$R1 1359
14 TraesCS2B01G484500 chr7B 528871662 528872994 1332 False 1199.000000 1199 83.0050 1022 2385 1 chr7B.!!$F1 1363
15 TraesCS2B01G484500 chr5D 543496374 543497325 951 False 342.000000 342 73.9130 1020 1950 1 chr5D.!!$F3 930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.036765 TTAACGCGCCTGTTGGAGAT 60.037 50.0 5.73 0.0 34.95 2.75 F
650 651 0.108138 ACAAGTCCGGCTGTAGATGC 60.108 55.0 0.00 0.0 0.00 3.91 F
651 652 0.176680 CAAGTCCGGCTGTAGATGCT 59.823 55.0 0.00 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 1904 0.736636 CCAGGCTCACGTATACGACA 59.263 55.000 30.77 15.2 43.02 4.35 R
2369 2446 1.739562 CCAGACTTGACGCTGAGCC 60.740 63.158 0.00 0.0 34.06 4.70 R
2662 2743 2.885894 GGGTCCGTCCAAATTACAAACA 59.114 45.455 0.00 0.0 38.11 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.154469 GGATTTTATAGGCGCGCGC 60.154 57.895 44.40 44.40 41.06 6.86
19 20 1.507096 GATTTTATAGGCGCGCGCG 60.507 57.895 45.73 45.73 43.06 6.86
40 41 2.809601 CGGCGCGCCATATCTACC 60.810 66.667 45.26 18.93 35.37 3.18
41 42 2.809601 GGCGCGCCATATCTACCG 60.810 66.667 43.55 0.00 35.81 4.02
42 43 3.479269 GCGCGCCATATCTACCGC 61.479 66.667 23.24 0.00 42.71 5.68
45 46 2.809601 CGCCATATCTACCGCGCC 60.810 66.667 0.00 0.00 37.97 6.53
46 47 2.342279 GCCATATCTACCGCGCCA 59.658 61.111 0.00 0.00 0.00 5.69
47 48 1.738099 GCCATATCTACCGCGCCAG 60.738 63.158 0.00 0.00 0.00 4.85
48 49 1.738099 CCATATCTACCGCGCCAGC 60.738 63.158 0.00 0.00 40.74 4.85
49 50 1.290324 CATATCTACCGCGCCAGCT 59.710 57.895 0.00 0.00 42.32 4.24
50 51 1.010935 CATATCTACCGCGCCAGCTG 61.011 60.000 6.78 6.78 42.32 4.24
51 52 2.771763 ATATCTACCGCGCCAGCTGC 62.772 60.000 8.66 2.87 42.32 5.25
58 59 4.410743 GCGCCAGCTGCCACTTTC 62.411 66.667 8.66 0.00 41.01 2.62
59 60 2.670934 CGCCAGCTGCCACTTTCT 60.671 61.111 8.66 0.00 36.24 2.52
60 61 2.684843 CGCCAGCTGCCACTTTCTC 61.685 63.158 8.66 0.00 36.24 2.87
61 62 2.338785 GCCAGCTGCCACTTTCTCC 61.339 63.158 8.66 0.00 0.00 3.71
62 63 1.676967 CCAGCTGCCACTTTCTCCC 60.677 63.158 8.66 0.00 0.00 4.30
63 64 1.676967 CAGCTGCCACTTTCTCCCC 60.677 63.158 0.00 0.00 0.00 4.81
64 65 2.361737 GCTGCCACTTTCTCCCCC 60.362 66.667 0.00 0.00 0.00 5.40
65 66 2.045926 CTGCCACTTTCTCCCCCG 60.046 66.667 0.00 0.00 0.00 5.73
66 67 4.344865 TGCCACTTTCTCCCCCGC 62.345 66.667 0.00 0.00 0.00 6.13
106 107 2.487892 CGGTAATTTGCCGCCACC 59.512 61.111 12.98 0.00 42.82 4.61
107 108 2.487892 GGTAATTTGCCGCCACCG 59.512 61.111 0.00 0.00 0.00 4.94
108 109 2.202557 GTAATTTGCCGCCACCGC 60.203 61.111 0.00 0.00 0.00 5.68
109 110 2.360600 TAATTTGCCGCCACCGCT 60.361 55.556 0.00 0.00 0.00 5.52
110 111 2.695759 TAATTTGCCGCCACCGCTG 61.696 57.895 0.00 0.00 0.00 5.18
124 125 2.251371 GCTGGAACACGCGAAACC 59.749 61.111 15.93 11.21 0.00 3.27
125 126 2.549282 CTGGAACACGCGAAACCG 59.451 61.111 15.93 0.00 0.00 4.44
126 127 2.950172 CTGGAACACGCGAAACCGG 61.950 63.158 15.93 11.75 0.00 5.28
127 128 3.719144 GGAACACGCGAAACCGGG 61.719 66.667 15.93 0.00 44.21 5.73
128 129 4.379143 GAACACGCGAAACCGGGC 62.379 66.667 15.93 0.00 42.72 6.13
143 144 4.392576 GGCCGCGCGTGCTAAAAA 62.393 61.111 31.70 0.00 39.65 1.94
159 160 1.468895 AAAAACGCTTTTACCGCACG 58.531 45.000 0.00 0.00 32.85 5.34
160 161 0.317186 AAAACGCTTTTACCGCACGG 60.317 50.000 7.71 7.71 42.03 4.94
161 162 1.159098 AAACGCTTTTACCGCACGGA 61.159 50.000 17.40 0.00 38.96 4.69
162 163 1.834458 AACGCTTTTACCGCACGGAC 61.834 55.000 17.40 0.00 38.96 4.79
163 164 2.472934 GCTTTTACCGCACGGACG 59.527 61.111 17.40 0.20 38.96 4.79
164 165 2.472934 CTTTTACCGCACGGACGC 59.527 61.111 17.40 0.00 38.96 5.19
172 173 3.541191 GCACGGACGCGTCTTTTA 58.459 55.556 35.50 0.00 0.00 1.52
173 174 1.854664 GCACGGACGCGTCTTTTAA 59.145 52.632 35.50 0.00 0.00 1.52
174 175 0.449993 GCACGGACGCGTCTTTTAAC 60.450 55.000 35.50 18.60 0.00 2.01
175 176 0.179292 CACGGACGCGTCTTTTAACG 60.179 55.000 35.50 29.54 45.31 3.18
181 182 4.717917 CGTCTTTTAACGCGCCTG 57.282 55.556 5.73 0.00 35.64 4.85
182 183 1.857364 CGTCTTTTAACGCGCCTGT 59.143 52.632 5.73 0.00 35.64 4.00
183 184 0.233848 CGTCTTTTAACGCGCCTGTT 59.766 50.000 5.73 3.50 35.64 3.16
184 185 1.670326 GTCTTTTAACGCGCCTGTTG 58.330 50.000 5.73 0.00 33.32 3.33
185 186 0.589223 TCTTTTAACGCGCCTGTTGG 59.411 50.000 5.73 0.00 33.32 3.77
186 187 0.589223 CTTTTAACGCGCCTGTTGGA 59.411 50.000 5.73 0.00 34.57 3.53
187 188 0.589223 TTTTAACGCGCCTGTTGGAG 59.411 50.000 5.73 0.00 36.16 3.86
188 189 0.249953 TTTAACGCGCCTGTTGGAGA 60.250 50.000 5.73 0.00 34.95 3.71
189 190 0.036765 TTAACGCGCCTGTTGGAGAT 60.037 50.000 5.73 0.00 34.95 2.75
190 191 0.739462 TAACGCGCCTGTTGGAGATG 60.739 55.000 5.73 0.00 34.95 2.90
191 192 3.869272 CGCGCCTGTTGGAGATGC 61.869 66.667 0.00 0.00 34.95 3.91
192 193 2.437359 GCGCCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 34.95 3.79
193 194 2.467826 GCGCCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 34.95 4.26
194 195 1.220206 CGCCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 34.95 4.09
195 196 0.461548 CGCCTGTTGGAGATGCTCTA 59.538 55.000 0.00 0.00 34.95 2.43
196 197 1.134699 CGCCTGTTGGAGATGCTCTAA 60.135 52.381 0.00 0.00 34.95 2.10
197 198 2.677902 CGCCTGTTGGAGATGCTCTAAA 60.678 50.000 0.00 0.00 33.06 1.85
198 199 2.941720 GCCTGTTGGAGATGCTCTAAAG 59.058 50.000 0.00 0.00 33.06 1.85
199 200 3.620966 GCCTGTTGGAGATGCTCTAAAGT 60.621 47.826 0.00 0.00 33.06 2.66
200 201 4.187694 CCTGTTGGAGATGCTCTAAAGTC 58.812 47.826 0.00 0.00 33.06 3.01
201 202 4.323028 CCTGTTGGAGATGCTCTAAAGTCA 60.323 45.833 0.00 0.00 33.06 3.41
202 203 4.825422 TGTTGGAGATGCTCTAAAGTCAG 58.175 43.478 0.00 0.00 33.06 3.51
203 204 4.187694 GTTGGAGATGCTCTAAAGTCAGG 58.812 47.826 0.00 0.00 33.06 3.86
204 205 2.169352 TGGAGATGCTCTAAAGTCAGGC 59.831 50.000 0.00 0.00 0.00 4.85
205 206 2.433970 GGAGATGCTCTAAAGTCAGGCT 59.566 50.000 0.00 0.00 0.00 4.58
206 207 3.492482 GGAGATGCTCTAAAGTCAGGCTC 60.492 52.174 0.00 0.00 0.00 4.70
207 208 3.102972 AGATGCTCTAAAGTCAGGCTCA 58.897 45.455 0.00 0.00 0.00 4.26
208 209 3.517100 AGATGCTCTAAAGTCAGGCTCAA 59.483 43.478 0.00 0.00 0.00 3.02
209 210 3.325293 TGCTCTAAAGTCAGGCTCAAG 57.675 47.619 0.00 0.00 0.00 3.02
210 211 2.027745 TGCTCTAAAGTCAGGCTCAAGG 60.028 50.000 0.00 0.00 0.00 3.61
211 212 2.626840 CTCTAAAGTCAGGCTCAAGGC 58.373 52.381 0.00 0.00 41.43 4.35
222 223 2.246719 GCTCAAGGCCGAATATGTCT 57.753 50.000 0.00 0.00 34.27 3.41
223 224 3.386768 GCTCAAGGCCGAATATGTCTA 57.613 47.619 0.00 0.00 34.27 2.59
224 225 3.931578 GCTCAAGGCCGAATATGTCTAT 58.068 45.455 0.00 0.00 34.27 1.98
225 226 3.681897 GCTCAAGGCCGAATATGTCTATG 59.318 47.826 0.00 0.00 34.27 2.23
226 227 3.664107 TCAAGGCCGAATATGTCTATGC 58.336 45.455 0.00 0.00 0.00 3.14
227 228 2.744202 CAAGGCCGAATATGTCTATGCC 59.256 50.000 0.00 0.00 34.80 4.40
228 229 1.279271 AGGCCGAATATGTCTATGCCC 59.721 52.381 0.00 0.00 35.01 5.36
229 230 1.003118 GGCCGAATATGTCTATGCCCA 59.997 52.381 0.00 0.00 30.72 5.36
230 231 2.552155 GGCCGAATATGTCTATGCCCAA 60.552 50.000 0.00 0.00 30.72 4.12
231 232 2.484264 GCCGAATATGTCTATGCCCAAC 59.516 50.000 0.00 0.00 0.00 3.77
232 233 3.807209 GCCGAATATGTCTATGCCCAACT 60.807 47.826 0.00 0.00 0.00 3.16
233 234 3.748048 CCGAATATGTCTATGCCCAACTG 59.252 47.826 0.00 0.00 0.00 3.16
234 235 3.748048 CGAATATGTCTATGCCCAACTGG 59.252 47.826 0.00 0.00 37.09 4.00
235 236 4.718961 GAATATGTCTATGCCCAACTGGT 58.281 43.478 0.00 0.00 36.04 4.00
236 237 4.796110 ATATGTCTATGCCCAACTGGTT 57.204 40.909 0.00 0.00 36.04 3.67
237 238 5.904984 ATATGTCTATGCCCAACTGGTTA 57.095 39.130 0.00 0.00 36.04 2.85
238 239 3.343941 TGTCTATGCCCAACTGGTTAC 57.656 47.619 0.00 0.00 36.04 2.50
239 240 2.277084 GTCTATGCCCAACTGGTTACG 58.723 52.381 0.00 0.00 36.04 3.18
240 241 1.014352 CTATGCCCAACTGGTTACGC 58.986 55.000 0.00 0.00 36.04 4.42
241 242 0.741574 TATGCCCAACTGGTTACGCG 60.742 55.000 3.53 3.53 36.04 6.01
242 243 4.097863 GCCCAACTGGTTACGCGC 62.098 66.667 5.73 0.00 36.04 6.86
243 244 3.784412 CCCAACTGGTTACGCGCG 61.784 66.667 30.96 30.96 0.00 6.86
244 245 4.439472 CCAACTGGTTACGCGCGC 62.439 66.667 32.58 23.91 0.00 6.86
245 246 3.707700 CAACTGGTTACGCGCGCA 61.708 61.111 32.58 16.39 0.00 6.09
246 247 2.968156 AACTGGTTACGCGCGCAA 60.968 55.556 32.58 22.63 0.00 4.85
247 248 3.231324 AACTGGTTACGCGCGCAAC 62.231 57.895 32.32 32.32 0.00 4.17
248 249 3.411351 CTGGTTACGCGCGCAACT 61.411 61.111 36.28 19.50 0.00 3.16
249 250 3.348967 CTGGTTACGCGCGCAACTC 62.349 63.158 36.28 27.86 0.00 3.01
250 251 4.143363 GGTTACGCGCGCAACTCC 62.143 66.667 36.28 22.77 0.00 3.85
251 252 3.408020 GTTACGCGCGCAACTCCA 61.408 61.111 32.65 2.69 0.00 3.86
252 253 2.662196 TTACGCGCGCAACTCCAA 60.662 55.556 32.58 11.63 0.00 3.53
253 254 2.030401 TTACGCGCGCAACTCCAAT 61.030 52.632 32.58 9.66 0.00 3.16
254 255 1.962092 TTACGCGCGCAACTCCAATC 61.962 55.000 32.58 0.00 0.00 2.67
255 256 4.520846 CGCGCGCAACTCCAATCC 62.521 66.667 32.61 0.00 0.00 3.01
256 257 4.179579 GCGCGCAACTCCAATCCC 62.180 66.667 29.10 0.00 0.00 3.85
257 258 2.436646 CGCGCAACTCCAATCCCT 60.437 61.111 8.75 0.00 0.00 4.20
258 259 2.753966 CGCGCAACTCCAATCCCTG 61.754 63.158 8.75 0.00 0.00 4.45
259 260 3.056313 GCGCAACTCCAATCCCTGC 62.056 63.158 0.30 0.00 0.00 4.85
260 261 2.409870 CGCAACTCCAATCCCTGCC 61.410 63.158 0.00 0.00 0.00 4.85
261 262 1.304381 GCAACTCCAATCCCTGCCA 60.304 57.895 0.00 0.00 0.00 4.92
262 263 0.685458 GCAACTCCAATCCCTGCCAT 60.685 55.000 0.00 0.00 0.00 4.40
263 264 1.856629 CAACTCCAATCCCTGCCATT 58.143 50.000 0.00 0.00 0.00 3.16
264 265 1.479323 CAACTCCAATCCCTGCCATTG 59.521 52.381 0.00 0.00 0.00 2.82
265 266 0.685458 ACTCCAATCCCTGCCATTGC 60.685 55.000 0.00 0.00 38.26 3.56
266 267 1.381599 TCCAATCCCTGCCATTGCC 60.382 57.895 0.00 0.00 36.33 4.52
267 268 2.437396 CCAATCCCTGCCATTGCCC 61.437 63.158 0.00 0.00 36.33 5.36
268 269 2.041612 AATCCCTGCCATTGCCCC 60.042 61.111 0.00 0.00 36.33 5.80
269 270 3.701760 AATCCCTGCCATTGCCCCC 62.702 63.158 0.00 0.00 36.33 5.40
271 272 4.403502 CCCTGCCATTGCCCCCTT 62.404 66.667 0.00 0.00 36.33 3.95
272 273 2.761213 CCTGCCATTGCCCCCTTC 60.761 66.667 0.00 0.00 36.33 3.46
273 274 2.037687 CTGCCATTGCCCCCTTCA 59.962 61.111 0.00 0.00 36.33 3.02
274 275 1.382146 CTGCCATTGCCCCCTTCAT 60.382 57.895 0.00 0.00 36.33 2.57
275 276 1.682451 CTGCCATTGCCCCCTTCATG 61.682 60.000 0.00 0.00 36.33 3.07
276 277 1.686800 GCCATTGCCCCCTTCATGT 60.687 57.895 0.00 0.00 0.00 3.21
277 278 1.963464 GCCATTGCCCCCTTCATGTG 61.963 60.000 0.00 0.00 0.00 3.21
278 279 1.332144 CCATTGCCCCCTTCATGTGG 61.332 60.000 0.00 0.00 0.00 4.17
279 280 0.324552 CATTGCCCCCTTCATGTGGA 60.325 55.000 8.66 0.00 0.00 4.02
280 281 0.638292 ATTGCCCCCTTCATGTGGAT 59.362 50.000 8.66 0.00 0.00 3.41
281 282 0.324552 TTGCCCCCTTCATGTGGATG 60.325 55.000 8.66 0.00 0.00 3.51
282 283 2.129785 GCCCCCTTCATGTGGATGC 61.130 63.158 8.66 7.09 0.00 3.91
283 284 1.825191 CCCCCTTCATGTGGATGCG 60.825 63.158 8.66 0.00 0.00 4.73
284 285 1.224315 CCCCTTCATGTGGATGCGA 59.776 57.895 8.66 0.00 0.00 5.10
285 286 0.816825 CCCCTTCATGTGGATGCGAG 60.817 60.000 8.66 0.00 0.00 5.03
286 287 1.442526 CCCTTCATGTGGATGCGAGC 61.443 60.000 8.66 0.00 0.00 5.03
287 288 1.442526 CCTTCATGTGGATGCGAGCC 61.443 60.000 0.00 0.00 0.00 4.70
288 289 1.442526 CTTCATGTGGATGCGAGCCC 61.443 60.000 0.00 0.00 0.00 5.19
289 290 1.913951 TTCATGTGGATGCGAGCCCT 61.914 55.000 0.00 0.00 0.00 5.19
290 291 1.452651 CATGTGGATGCGAGCCCTT 60.453 57.895 0.00 0.00 0.00 3.95
291 292 1.452651 ATGTGGATGCGAGCCCTTG 60.453 57.895 0.00 0.00 0.00 3.61
292 293 3.512516 GTGGATGCGAGCCCTTGC 61.513 66.667 0.45 0.45 40.38 4.01
297 298 3.057548 TGCGAGCCCTTGCATGTG 61.058 61.111 6.11 0.00 44.49 3.21
298 299 4.487412 GCGAGCCCTTGCATGTGC 62.487 66.667 0.00 0.00 41.13 4.57
308 309 3.494378 GCATGTGCATGACGCTCT 58.506 55.556 15.53 0.00 41.20 4.09
309 310 1.351012 GCATGTGCATGACGCTCTC 59.649 57.895 15.53 0.00 41.20 3.20
310 311 1.088340 GCATGTGCATGACGCTCTCT 61.088 55.000 15.53 0.00 41.20 3.10
311 312 0.928922 CATGTGCATGACGCTCTCTC 59.071 55.000 6.32 0.00 41.20 3.20
312 313 0.822811 ATGTGCATGACGCTCTCTCT 59.177 50.000 0.00 0.00 43.06 3.10
313 314 0.172127 TGTGCATGACGCTCTCTCTC 59.828 55.000 0.00 0.00 43.06 3.20
314 315 0.455410 GTGCATGACGCTCTCTCTCT 59.545 55.000 0.00 0.00 43.06 3.10
315 316 0.737804 TGCATGACGCTCTCTCTCTC 59.262 55.000 0.00 0.00 43.06 3.20
316 317 1.024271 GCATGACGCTCTCTCTCTCT 58.976 55.000 0.00 0.00 37.77 3.10
317 318 1.002468 GCATGACGCTCTCTCTCTCTC 60.002 57.143 0.00 0.00 37.77 3.20
318 319 2.564771 CATGACGCTCTCTCTCTCTCT 58.435 52.381 0.00 0.00 0.00 3.10
319 320 2.779755 TGACGCTCTCTCTCTCTCTT 57.220 50.000 0.00 0.00 0.00 2.85
320 321 2.627945 TGACGCTCTCTCTCTCTCTTC 58.372 52.381 0.00 0.00 0.00 2.87
321 322 1.940613 GACGCTCTCTCTCTCTCTTCC 59.059 57.143 0.00 0.00 0.00 3.46
322 323 1.559682 ACGCTCTCTCTCTCTCTTCCT 59.440 52.381 0.00 0.00 0.00 3.36
323 324 1.942657 CGCTCTCTCTCTCTCTTCCTG 59.057 57.143 0.00 0.00 0.00 3.86
324 325 2.680805 CGCTCTCTCTCTCTCTTCCTGT 60.681 54.545 0.00 0.00 0.00 4.00
325 326 2.684881 GCTCTCTCTCTCTCTTCCTGTG 59.315 54.545 0.00 0.00 0.00 3.66
326 327 2.684881 CTCTCTCTCTCTCTTCCTGTGC 59.315 54.545 0.00 0.00 0.00 4.57
327 328 2.040947 TCTCTCTCTCTCTTCCTGTGCA 59.959 50.000 0.00 0.00 0.00 4.57
328 329 2.164219 CTCTCTCTCTCTTCCTGTGCAC 59.836 54.545 10.75 10.75 0.00 4.57
329 330 1.891811 CTCTCTCTCTTCCTGTGCACA 59.108 52.381 20.37 20.37 0.00 4.57
330 331 1.615883 TCTCTCTCTTCCTGTGCACAC 59.384 52.381 17.42 0.00 0.00 3.82
331 332 1.342496 CTCTCTCTTCCTGTGCACACA 59.658 52.381 17.42 1.96 39.32 3.72
341 342 3.831729 GTGCACACACTGACACATG 57.168 52.632 13.17 0.00 43.85 3.21
342 343 0.317269 GTGCACACACTGACACATGC 60.317 55.000 13.17 0.00 43.85 4.06
343 344 0.747283 TGCACACACTGACACATGCA 60.747 50.000 0.00 0.00 40.57 3.96
344 345 0.594602 GCACACACTGACACATGCAT 59.405 50.000 0.00 0.00 33.27 3.96
345 346 1.664874 GCACACACTGACACATGCATG 60.665 52.381 25.09 25.09 33.27 4.06
346 347 1.605232 CACACACTGACACATGCATGT 59.395 47.619 26.61 26.61 42.84 3.21
356 357 5.550232 GACACATGCATGTCTTACATCAA 57.450 39.130 29.23 0.00 44.71 2.57
357 358 5.300969 ACACATGCATGTCTTACATCAAC 57.699 39.130 29.23 0.00 36.53 3.18
358 359 4.761227 ACACATGCATGTCTTACATCAACA 59.239 37.500 29.23 0.00 36.53 3.33
359 360 5.090757 CACATGCATGTCTTACATCAACAC 58.909 41.667 29.23 0.00 36.53 3.32
360 361 4.761227 ACATGCATGTCTTACATCAACACA 59.239 37.500 26.61 0.00 36.53 3.72
361 362 5.416639 ACATGCATGTCTTACATCAACACAT 59.583 36.000 26.61 0.00 36.53 3.21
362 363 5.550232 TGCATGTCTTACATCAACACATC 57.450 39.130 0.00 0.00 36.53 3.06
363 364 5.002516 TGCATGTCTTACATCAACACATCA 58.997 37.500 0.00 0.00 36.53 3.07
364 365 5.472820 TGCATGTCTTACATCAACACATCAA 59.527 36.000 0.00 0.00 36.53 2.57
365 366 6.151480 TGCATGTCTTACATCAACACATCAAT 59.849 34.615 0.00 0.00 36.53 2.57
366 367 6.471198 GCATGTCTTACATCAACACATCAATG 59.529 38.462 0.00 0.00 36.53 2.82
367 368 5.941733 TGTCTTACATCAACACATCAATGC 58.058 37.500 0.00 0.00 0.00 3.56
368 369 5.706833 TGTCTTACATCAACACATCAATGCT 59.293 36.000 0.00 0.00 0.00 3.79
369 370 6.207221 TGTCTTACATCAACACATCAATGCTT 59.793 34.615 0.00 0.00 0.00 3.91
370 371 7.390162 TGTCTTACATCAACACATCAATGCTTA 59.610 33.333 0.00 0.00 0.00 3.09
371 372 7.693951 GTCTTACATCAACACATCAATGCTTAC 59.306 37.037 0.00 0.00 0.00 2.34
372 373 7.607607 TCTTACATCAACACATCAATGCTTACT 59.392 33.333 0.00 0.00 0.00 2.24
373 374 6.579666 ACATCAACACATCAATGCTTACTT 57.420 33.333 0.00 0.00 0.00 2.24
374 375 6.985117 ACATCAACACATCAATGCTTACTTT 58.015 32.000 0.00 0.00 0.00 2.66
375 376 8.109705 ACATCAACACATCAATGCTTACTTTA 57.890 30.769 0.00 0.00 0.00 1.85
376 377 8.742777 ACATCAACACATCAATGCTTACTTTAT 58.257 29.630 0.00 0.00 0.00 1.40
377 378 9.229784 CATCAACACATCAATGCTTACTTTATC 57.770 33.333 0.00 0.00 0.00 1.75
378 379 8.565896 TCAACACATCAATGCTTACTTTATCT 57.434 30.769 0.00 0.00 0.00 1.98
379 380 9.013229 TCAACACATCAATGCTTACTTTATCTT 57.987 29.630 0.00 0.00 0.00 2.40
380 381 9.282247 CAACACATCAATGCTTACTTTATCTTC 57.718 33.333 0.00 0.00 0.00 2.87
381 382 7.989826 ACACATCAATGCTTACTTTATCTTCC 58.010 34.615 0.00 0.00 0.00 3.46
382 383 7.067494 ACACATCAATGCTTACTTTATCTTCCC 59.933 37.037 0.00 0.00 0.00 3.97
383 384 7.284034 CACATCAATGCTTACTTTATCTTCCCT 59.716 37.037 0.00 0.00 0.00 4.20
384 385 7.500559 ACATCAATGCTTACTTTATCTTCCCTC 59.499 37.037 0.00 0.00 0.00 4.30
385 386 7.200434 TCAATGCTTACTTTATCTTCCCTCT 57.800 36.000 0.00 0.00 0.00 3.69
386 387 7.275920 TCAATGCTTACTTTATCTTCCCTCTC 58.724 38.462 0.00 0.00 0.00 3.20
387 388 5.615925 TGCTTACTTTATCTTCCCTCTCC 57.384 43.478 0.00 0.00 0.00 3.71
388 389 5.281314 TGCTTACTTTATCTTCCCTCTCCT 58.719 41.667 0.00 0.00 0.00 3.69
389 390 5.364157 TGCTTACTTTATCTTCCCTCTCCTC 59.636 44.000 0.00 0.00 0.00 3.71
390 391 5.600898 GCTTACTTTATCTTCCCTCTCCTCT 59.399 44.000 0.00 0.00 0.00 3.69
391 392 6.778559 GCTTACTTTATCTTCCCTCTCCTCTA 59.221 42.308 0.00 0.00 0.00 2.43
392 393 7.288158 GCTTACTTTATCTTCCCTCTCCTCTAA 59.712 40.741 0.00 0.00 0.00 2.10
393 394 8.536340 TTACTTTATCTTCCCTCTCCTCTAAC 57.464 38.462 0.00 0.00 0.00 2.34
394 395 6.747931 ACTTTATCTTCCCTCTCCTCTAACT 58.252 40.000 0.00 0.00 0.00 2.24
395 396 6.837048 ACTTTATCTTCCCTCTCCTCTAACTC 59.163 42.308 0.00 0.00 0.00 3.01
396 397 3.673543 TCTTCCCTCTCCTCTAACTCC 57.326 52.381 0.00 0.00 0.00 3.85
397 398 2.927007 TCTTCCCTCTCCTCTAACTCCA 59.073 50.000 0.00 0.00 0.00 3.86
398 399 3.533907 TCTTCCCTCTCCTCTAACTCCAT 59.466 47.826 0.00 0.00 0.00 3.41
399 400 3.603965 TCCCTCTCCTCTAACTCCATC 57.396 52.381 0.00 0.00 0.00 3.51
400 401 2.859404 TCCCTCTCCTCTAACTCCATCA 59.141 50.000 0.00 0.00 0.00 3.07
401 402 2.962421 CCCTCTCCTCTAACTCCATCAC 59.038 54.545 0.00 0.00 0.00 3.06
402 403 3.373658 CCCTCTCCTCTAACTCCATCACT 60.374 52.174 0.00 0.00 0.00 3.41
403 404 4.285863 CCTCTCCTCTAACTCCATCACTT 58.714 47.826 0.00 0.00 0.00 3.16
404 405 4.714308 CCTCTCCTCTAACTCCATCACTTT 59.286 45.833 0.00 0.00 0.00 2.66
405 406 5.188751 CCTCTCCTCTAACTCCATCACTTTT 59.811 44.000 0.00 0.00 0.00 2.27
406 407 6.381420 CCTCTCCTCTAACTCCATCACTTTTA 59.619 42.308 0.00 0.00 0.00 1.52
407 408 7.093289 CCTCTCCTCTAACTCCATCACTTTTAA 60.093 40.741 0.00 0.00 0.00 1.52
408 409 8.380742 TCTCCTCTAACTCCATCACTTTTAAT 57.619 34.615 0.00 0.00 0.00 1.40
409 410 8.826765 TCTCCTCTAACTCCATCACTTTTAATT 58.173 33.333 0.00 0.00 0.00 1.40
410 411 9.454859 CTCCTCTAACTCCATCACTTTTAATTT 57.545 33.333 0.00 0.00 0.00 1.82
411 412 9.807921 TCCTCTAACTCCATCACTTTTAATTTT 57.192 29.630 0.00 0.00 0.00 1.82
433 434 9.783081 ATTTTCTTTTGACAATTTTAGATGGCT 57.217 25.926 0.00 0.00 0.00 4.75
434 435 8.816640 TTTCTTTTGACAATTTTAGATGGCTC 57.183 30.769 0.00 0.00 0.00 4.70
435 436 7.523293 TCTTTTGACAATTTTAGATGGCTCA 57.477 32.000 0.00 0.00 0.00 4.26
436 437 8.125978 TCTTTTGACAATTTTAGATGGCTCAT 57.874 30.769 0.00 0.00 0.00 2.90
437 438 9.241919 TCTTTTGACAATTTTAGATGGCTCATA 57.758 29.630 0.00 0.00 0.00 2.15
440 441 8.985315 TTGACAATTTTAGATGGCTCATATCT 57.015 30.769 0.00 0.00 38.40 1.98
441 442 8.985315 TGACAATTTTAGATGGCTCATATCTT 57.015 30.769 0.00 0.00 36.38 2.40
442 443 9.412460 TGACAATTTTAGATGGCTCATATCTTT 57.588 29.630 0.00 0.00 36.38 2.52
449 450 9.693739 TTTAGATGGCTCATATCTTTAAAACCA 57.306 29.630 0.00 0.00 36.38 3.67
450 451 9.693739 TTAGATGGCTCATATCTTTAAAACCAA 57.306 29.630 0.00 0.00 36.38 3.67
451 452 8.593945 AGATGGCTCATATCTTTAAAACCAAA 57.406 30.769 0.00 0.00 30.98 3.28
452 453 9.034800 AGATGGCTCATATCTTTAAAACCAAAA 57.965 29.630 0.00 0.00 30.98 2.44
453 454 9.822185 GATGGCTCATATCTTTAAAACCAAAAT 57.178 29.630 0.00 0.00 0.00 1.82
474 475 9.915690 CAAAATTACGTTTTTGAAACTTTTTGC 57.084 25.926 16.83 0.00 45.28 3.68
475 476 9.665264 AAAATTACGTTTTTGAAACTTTTTGCA 57.335 22.222 0.00 0.00 36.65 4.08
476 477 9.833182 AAATTACGTTTTTGAAACTTTTTGCAT 57.167 22.222 0.00 0.00 0.00 3.96
481 482 9.271738 ACGTTTTTGAAACTTTTTGCATATTTG 57.728 25.926 0.00 0.00 0.00 2.32
482 483 9.483062 CGTTTTTGAAACTTTTTGCATATTTGA 57.517 25.926 0.00 0.00 0.00 2.69
487 488 8.060020 TGAAACTTTTTGCATATTTGAACTCG 57.940 30.769 0.00 0.00 0.00 4.18
488 489 7.704472 TGAAACTTTTTGCATATTTGAACTCGT 59.296 29.630 0.00 0.00 0.00 4.18
489 490 6.991485 ACTTTTTGCATATTTGAACTCGTG 57.009 33.333 0.00 0.00 0.00 4.35
490 491 6.734137 ACTTTTTGCATATTTGAACTCGTGA 58.266 32.000 0.00 0.00 0.00 4.35
491 492 6.636850 ACTTTTTGCATATTTGAACTCGTGAC 59.363 34.615 0.00 0.00 0.00 3.67
492 493 3.989705 TGCATATTTGAACTCGTGACG 57.010 42.857 0.00 0.00 0.00 4.35
493 494 2.093625 TGCATATTTGAACTCGTGACGC 59.906 45.455 0.00 0.00 0.00 5.19
494 495 2.536928 GCATATTTGAACTCGTGACGCC 60.537 50.000 0.00 0.00 0.00 5.68
495 496 2.442212 TATTTGAACTCGTGACGCCA 57.558 45.000 0.00 0.00 0.00 5.69
496 497 1.588674 ATTTGAACTCGTGACGCCAA 58.411 45.000 0.00 0.00 0.00 4.52
497 498 0.934496 TTTGAACTCGTGACGCCAAG 59.066 50.000 0.00 0.00 0.00 3.61
498 499 1.495584 TTGAACTCGTGACGCCAAGC 61.496 55.000 0.00 0.00 0.00 4.01
499 500 1.954146 GAACTCGTGACGCCAAGCA 60.954 57.895 0.00 0.00 0.00 3.91
500 501 2.159272 GAACTCGTGACGCCAAGCAC 62.159 60.000 0.00 0.00 0.00 4.40
501 502 2.356313 CTCGTGACGCCAAGCACT 60.356 61.111 0.00 0.00 32.98 4.40
502 503 1.956170 CTCGTGACGCCAAGCACTT 60.956 57.895 0.00 0.00 32.98 3.16
503 504 1.891060 CTCGTGACGCCAAGCACTTC 61.891 60.000 0.00 0.00 32.98 3.01
504 505 1.956170 CGTGACGCCAAGCACTTCT 60.956 57.895 0.00 0.00 32.98 2.85
505 506 1.498865 CGTGACGCCAAGCACTTCTT 61.499 55.000 0.00 0.00 34.78 2.52
518 519 7.786305 CAAGCACTTCTTGTATATGTTTGTG 57.214 36.000 0.00 0.00 45.48 3.33
519 520 7.584108 CAAGCACTTCTTGTATATGTTTGTGA 58.416 34.615 0.00 0.00 45.48 3.58
520 521 7.928307 AGCACTTCTTGTATATGTTTGTGAT 57.072 32.000 0.00 0.00 0.00 3.06
521 522 9.448438 AAGCACTTCTTGTATATGTTTGTGATA 57.552 29.630 0.00 0.00 32.79 2.15
522 523 9.618890 AGCACTTCTTGTATATGTTTGTGATAT 57.381 29.630 0.00 0.00 0.00 1.63
523 524 9.655769 GCACTTCTTGTATATGTTTGTGATATG 57.344 33.333 0.00 0.00 0.00 1.78
525 526 9.905713 ACTTCTTGTATATGTTTGTGATATGGT 57.094 29.630 0.00 0.00 0.00 3.55
534 535 9.866655 ATATGTTTGTGATATGGTAATTGAGGT 57.133 29.630 0.00 0.00 0.00 3.85
535 536 7.389803 TGTTTGTGATATGGTAATTGAGGTG 57.610 36.000 0.00 0.00 0.00 4.00
536 537 6.945435 TGTTTGTGATATGGTAATTGAGGTGT 59.055 34.615 0.00 0.00 0.00 4.16
537 538 7.120579 TGTTTGTGATATGGTAATTGAGGTGTC 59.879 37.037 0.00 0.00 0.00 3.67
538 539 5.680619 TGTGATATGGTAATTGAGGTGTCC 58.319 41.667 0.00 0.00 0.00 4.02
539 540 4.750098 GTGATATGGTAATTGAGGTGTCCG 59.250 45.833 0.00 0.00 0.00 4.79
540 541 2.710096 ATGGTAATTGAGGTGTCCGG 57.290 50.000 0.00 0.00 0.00 5.14
541 542 1.646912 TGGTAATTGAGGTGTCCGGA 58.353 50.000 0.00 0.00 0.00 5.14
542 543 2.193127 TGGTAATTGAGGTGTCCGGAT 58.807 47.619 7.81 0.00 0.00 4.18
543 544 2.093181 TGGTAATTGAGGTGTCCGGATG 60.093 50.000 7.81 0.00 0.00 3.51
544 545 2.093128 GGTAATTGAGGTGTCCGGATGT 60.093 50.000 7.81 0.00 0.00 3.06
545 546 2.113860 AATTGAGGTGTCCGGATGTG 57.886 50.000 7.81 0.00 0.00 3.21
546 547 0.253044 ATTGAGGTGTCCGGATGTGG 59.747 55.000 7.81 0.00 0.00 4.17
547 548 0.834261 TTGAGGTGTCCGGATGTGGA 60.834 55.000 7.81 0.00 35.04 4.02
548 549 0.617535 TGAGGTGTCCGGATGTGGAT 60.618 55.000 7.81 0.00 40.91 3.41
549 550 0.541863 GAGGTGTCCGGATGTGGATT 59.458 55.000 7.81 0.00 40.91 3.01
550 551 1.760613 GAGGTGTCCGGATGTGGATTA 59.239 52.381 7.81 0.00 40.91 1.75
551 552 1.485066 AGGTGTCCGGATGTGGATTAC 59.515 52.381 7.81 0.00 40.91 1.89
552 553 1.208535 GGTGTCCGGATGTGGATTACA 59.791 52.381 7.81 0.00 44.87 2.41
565 566 4.404073 TGTGGATTACATTATTTGGGGTGC 59.596 41.667 0.00 0.00 33.42 5.01
566 567 3.964031 TGGATTACATTATTTGGGGTGCC 59.036 43.478 0.00 0.00 0.00 5.01
567 568 3.323691 GGATTACATTATTTGGGGTGCCC 59.676 47.826 0.00 0.00 45.71 5.36
595 596 3.477085 GGACGCGCAAATCCGTTA 58.523 55.556 5.73 0.00 37.87 3.18
596 597 1.059838 GGACGCGCAAATCCGTTAC 59.940 57.895 5.73 0.00 37.87 2.50
597 598 1.059838 GACGCGCAAATCCGTTACC 59.940 57.895 5.73 0.00 37.87 2.85
598 599 1.356527 GACGCGCAAATCCGTTACCT 61.357 55.000 5.73 0.00 37.87 3.08
599 600 0.952010 ACGCGCAAATCCGTTACCTT 60.952 50.000 5.73 0.00 33.26 3.50
600 601 1.000884 CGCGCAAATCCGTTACCTTA 58.999 50.000 8.75 0.00 0.00 2.69
601 602 1.394227 CGCGCAAATCCGTTACCTTAA 59.606 47.619 8.75 0.00 0.00 1.85
602 603 2.159680 CGCGCAAATCCGTTACCTTAAA 60.160 45.455 8.75 0.00 0.00 1.52
603 604 3.486209 CGCGCAAATCCGTTACCTTAAAT 60.486 43.478 8.75 0.00 0.00 1.40
604 605 3.789224 GCGCAAATCCGTTACCTTAAATG 59.211 43.478 0.30 0.00 0.00 2.32
605 606 3.789224 CGCAAATCCGTTACCTTAAATGC 59.211 43.478 0.00 0.00 0.00 3.56
606 607 4.109766 GCAAATCCGTTACCTTAAATGCC 58.890 43.478 0.00 0.00 0.00 4.40
607 608 4.347813 CAAATCCGTTACCTTAAATGCCG 58.652 43.478 0.00 0.00 0.00 5.69
608 609 2.766345 TCCGTTACCTTAAATGCCGT 57.234 45.000 0.00 0.00 0.00 5.68
609 610 2.348660 TCCGTTACCTTAAATGCCGTG 58.651 47.619 0.00 0.00 0.00 4.94
610 611 1.399089 CCGTTACCTTAAATGCCGTGG 59.601 52.381 0.00 0.00 0.00 4.94
611 612 2.348660 CGTTACCTTAAATGCCGTGGA 58.651 47.619 0.00 0.00 0.00 4.02
612 613 2.094734 CGTTACCTTAAATGCCGTGGAC 59.905 50.000 0.00 0.00 0.00 4.02
613 614 2.012937 TACCTTAAATGCCGTGGACG 57.987 50.000 0.00 0.00 39.44 4.79
614 615 1.303091 ACCTTAAATGCCGTGGACGC 61.303 55.000 0.00 0.00 38.18 5.19
615 616 1.060308 CTTAAATGCCGTGGACGCG 59.940 57.895 3.53 3.53 38.18 6.01
616 617 1.632046 CTTAAATGCCGTGGACGCGT 61.632 55.000 13.85 13.85 38.18 6.01
617 618 1.628447 TTAAATGCCGTGGACGCGTC 61.628 55.000 30.67 30.67 38.18 5.19
618 619 2.495366 TAAATGCCGTGGACGCGTCT 62.495 55.000 35.50 17.06 38.18 4.18
622 623 4.129737 CCGTGGACGCGTCTGGAT 62.130 66.667 35.50 0.74 38.18 3.41
623 624 2.579787 CGTGGACGCGTCTGGATC 60.580 66.667 35.50 20.60 0.00 3.36
624 625 2.579787 GTGGACGCGTCTGGATCG 60.580 66.667 35.50 0.00 0.00 3.69
625 626 3.822192 TGGACGCGTCTGGATCGG 61.822 66.667 35.50 0.00 0.00 4.18
626 627 3.515286 GGACGCGTCTGGATCGGA 61.515 66.667 35.50 0.00 0.00 4.55
627 628 2.722487 GACGCGTCTGGATCGGAT 59.278 61.111 31.12 0.00 0.00 4.18
628 629 1.065928 GACGCGTCTGGATCGGATT 59.934 57.895 31.12 0.00 0.00 3.01
629 630 0.527817 GACGCGTCTGGATCGGATTT 60.528 55.000 31.12 0.00 0.00 2.17
630 631 0.806102 ACGCGTCTGGATCGGATTTG 60.806 55.000 5.58 0.00 0.00 2.32
631 632 0.527600 CGCGTCTGGATCGGATTTGA 60.528 55.000 0.00 0.00 0.00 2.69
632 633 0.931005 GCGTCTGGATCGGATTTGAC 59.069 55.000 0.00 1.05 0.00 3.18
633 634 1.739035 GCGTCTGGATCGGATTTGACA 60.739 52.381 14.53 3.86 0.00 3.58
634 635 2.616960 CGTCTGGATCGGATTTGACAA 58.383 47.619 14.53 0.00 0.00 3.18
635 636 2.604914 CGTCTGGATCGGATTTGACAAG 59.395 50.000 14.53 0.00 0.00 3.16
636 637 3.600388 GTCTGGATCGGATTTGACAAGT 58.400 45.455 11.40 0.00 0.00 3.16
637 638 3.619038 GTCTGGATCGGATTTGACAAGTC 59.381 47.826 2.19 2.19 0.00 3.01
638 639 2.939103 CTGGATCGGATTTGACAAGTCC 59.061 50.000 17.56 17.56 0.00 3.85
642 643 3.249687 GGATTTGACAAGTCCGGCT 57.750 52.632 13.36 0.00 0.00 5.52
643 644 0.804989 GGATTTGACAAGTCCGGCTG 59.195 55.000 13.36 0.00 0.00 4.85
644 645 1.523758 GATTTGACAAGTCCGGCTGT 58.476 50.000 0.00 0.00 0.00 4.40
645 646 2.614481 GGATTTGACAAGTCCGGCTGTA 60.614 50.000 13.36 0.00 0.00 2.74
646 647 2.163818 TTTGACAAGTCCGGCTGTAG 57.836 50.000 0.00 0.00 0.00 2.74
647 648 1.334160 TTGACAAGTCCGGCTGTAGA 58.666 50.000 0.00 0.00 0.00 2.59
648 649 1.557099 TGACAAGTCCGGCTGTAGAT 58.443 50.000 0.00 0.00 0.00 1.98
649 650 1.204704 TGACAAGTCCGGCTGTAGATG 59.795 52.381 0.00 0.00 0.00 2.90
650 651 0.108138 ACAAGTCCGGCTGTAGATGC 60.108 55.000 0.00 0.00 0.00 3.91
651 652 0.176680 CAAGTCCGGCTGTAGATGCT 59.823 55.000 0.00 0.00 0.00 3.79
662 663 3.679083 GCTGTAGATGCTTAAAGTCGGGT 60.679 47.826 0.00 0.00 0.00 5.28
670 671 2.500229 CTTAAAGTCGGGTTCAAGGCA 58.500 47.619 0.00 0.00 0.00 4.75
683 684 5.124617 GGGTTCAAGGCATTCTCTCTAAAAG 59.875 44.000 0.00 0.00 0.00 2.27
684 685 5.707764 GGTTCAAGGCATTCTCTCTAAAAGT 59.292 40.000 0.00 0.00 0.00 2.66
728 729 6.427853 CGCTGATCAGTTGGATGGAAATATTA 59.572 38.462 23.38 0.00 36.00 0.98
751 752 1.471327 CCAAACCAGCACACACAAAGG 60.471 52.381 0.00 0.00 0.00 3.11
831 832 1.454201 TTTATTGCCAATCGGACGCA 58.546 45.000 0.00 0.00 0.00 5.24
832 833 0.730265 TTATTGCCAATCGGACGCAC 59.270 50.000 0.00 0.00 30.84 5.34
913 948 9.739276 GATAGATGTATCTGCTCTATATAGGCT 57.261 37.037 18.26 0.00 37.76 4.58
914 949 9.739276 ATAGATGTATCTGCTCTATATAGGCTC 57.261 37.037 18.26 9.68 37.76 4.70
915 950 7.004086 AGATGTATCTGCTCTATATAGGCTCC 58.996 42.308 18.26 4.67 35.42 4.70
916 951 5.126779 TGTATCTGCTCTATATAGGCTCCG 58.873 45.833 18.26 10.51 0.00 4.63
917 952 3.006112 TCTGCTCTATATAGGCTCCGG 57.994 52.381 18.26 0.00 0.00 5.14
918 953 1.407258 CTGCTCTATATAGGCTCCGGC 59.593 57.143 18.26 10.82 37.82 6.13
933 968 2.185867 GGCACGCGTCCCTGATAA 59.814 61.111 13.23 0.00 0.00 1.75
935 970 1.153628 GCACGCGTCCCTGATAACT 60.154 57.895 9.86 0.00 0.00 2.24
940 975 2.555757 ACGCGTCCCTGATAACTATACC 59.444 50.000 5.58 0.00 0.00 2.73
964 999 1.815003 GCTTCCCAACCATCTTCACAG 59.185 52.381 0.00 0.00 0.00 3.66
970 1005 1.728971 CAACCATCTTCACAGAGCGAC 59.271 52.381 0.00 0.00 30.36 5.19
972 1007 0.534412 CCATCTTCACAGAGCGACCT 59.466 55.000 0.00 0.00 30.36 3.85
1156 1191 0.329261 CAACCTCTCCAGGATTGCCA 59.671 55.000 0.00 0.00 43.65 4.92
1158 1193 0.548682 ACCTCTCCAGGATTGCCAGT 60.549 55.000 0.00 0.00 43.65 4.00
1160 1195 0.747283 CTCTCCAGGATTGCCAGTGC 60.747 60.000 0.00 0.00 36.29 4.40
2243 2320 1.967779 TGTCGTGGAGAAGATGGTGAA 59.032 47.619 0.00 0.00 0.00 3.18
2369 2446 0.248825 CTCGTCCGCTTCATCAGAGG 60.249 60.000 0.00 0.00 43.88 3.69
2562 2643 9.758651 ATGGAATAAACTTTCAACTTTTGGTAC 57.241 29.630 0.00 0.00 0.00 3.34
2805 3826 9.797556 GTTGTTAAAATATGGATTGTTCTACCC 57.202 33.333 0.00 0.00 0.00 3.69
2806 3827 8.528044 TGTTAAAATATGGATTGTTCTACCCC 57.472 34.615 0.00 0.00 0.00 4.95
2807 3828 7.562088 TGTTAAAATATGGATTGTTCTACCCCC 59.438 37.037 0.00 0.00 0.00 5.40
2808 3829 5.742562 AAATATGGATTGTTCTACCCCCA 57.257 39.130 0.00 0.00 0.00 4.96
2809 3830 5.742562 AATATGGATTGTTCTACCCCCAA 57.257 39.130 0.00 0.00 0.00 4.12
2810 3831 5.742562 ATATGGATTGTTCTACCCCCAAA 57.257 39.130 0.00 0.00 0.00 3.28
2811 3832 4.625225 ATGGATTGTTCTACCCCCAAAT 57.375 40.909 0.00 0.00 0.00 2.32
2812 3833 4.412060 TGGATTGTTCTACCCCCAAATT 57.588 40.909 0.00 0.00 0.00 1.82
2813 3834 4.757692 TGGATTGTTCTACCCCCAAATTT 58.242 39.130 0.00 0.00 0.00 1.82
2814 3835 5.158889 TGGATTGTTCTACCCCCAAATTTT 58.841 37.500 0.00 0.00 0.00 1.82
2815 3836 5.608860 TGGATTGTTCTACCCCCAAATTTTT 59.391 36.000 0.00 0.00 0.00 1.94
2840 3861 2.341846 GGACTGTTCCAGTGGAAACA 57.658 50.000 26.19 22.13 45.44 2.83
2861 3882 8.974060 AAACAACTAGAAAACCTTATGTCTCA 57.026 30.769 0.00 0.00 0.00 3.27
3000 4021 8.774586 CATACTAGGCCTATTTGTTGTGTTATC 58.225 37.037 14.30 0.00 0.00 1.75
3102 4125 0.737367 CAATCAAGAGTGGAGCGCGA 60.737 55.000 12.10 0.00 0.00 5.87
3227 4250 2.832563 TCGCAATGTTGACTCAGACAA 58.167 42.857 0.00 0.00 0.00 3.18
3235 4258 7.096312 GCAATGTTGACTCAGACAAATTTCTTC 60.096 37.037 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.154469 GCGCGCGCCTATAAAATCC 60.154 57.895 42.83 12.00 34.56 3.01
1 2 1.507096 CGCGCGCGCCTATAAAATC 60.507 57.895 44.64 17.46 37.98 2.17
2 3 1.492319 TTCGCGCGCGCCTATAAAAT 61.492 50.000 45.41 0.00 39.59 1.82
3 4 2.084763 CTTCGCGCGCGCCTATAAAA 62.085 55.000 45.41 30.82 39.59 1.52
4 5 2.582265 CTTCGCGCGCGCCTATAAA 61.582 57.895 45.41 31.52 39.59 1.40
5 6 3.028019 CTTCGCGCGCGCCTATAA 61.028 61.111 45.41 32.23 39.59 0.98
23 24 2.809601 GGTAGATATGGCGCGCCG 60.810 66.667 41.73 0.00 39.42 6.46
24 25 2.809601 CGGTAGATATGGCGCGCC 60.810 66.667 42.35 42.35 0.00 6.53
25 26 3.479269 GCGGTAGATATGGCGCGC 61.479 66.667 25.94 25.94 0.00 6.86
26 27 3.172575 CGCGGTAGATATGGCGCG 61.173 66.667 0.00 0.00 42.25 6.86
29 30 1.738099 CTGGCGCGGTAGATATGGC 60.738 63.158 8.83 0.00 0.00 4.40
30 31 1.738099 GCTGGCGCGGTAGATATGG 60.738 63.158 8.83 0.00 0.00 2.74
31 32 1.010935 CAGCTGGCGCGGTAGATATG 61.011 60.000 8.83 0.00 42.32 1.78
32 33 1.290324 CAGCTGGCGCGGTAGATAT 59.710 57.895 8.83 0.00 42.32 1.63
33 34 2.728180 CAGCTGGCGCGGTAGATA 59.272 61.111 8.83 0.00 42.32 1.98
34 35 4.899239 GCAGCTGGCGCGGTAGAT 62.899 66.667 17.12 0.00 42.32 1.98
42 43 2.670934 AGAAAGTGGCAGCTGGCG 60.671 61.111 32.12 0.00 46.16 5.69
43 44 2.338785 GGAGAAAGTGGCAGCTGGC 61.339 63.158 31.92 31.92 43.74 4.85
44 45 1.676967 GGGAGAAAGTGGCAGCTGG 60.677 63.158 17.12 0.00 0.00 4.85
45 46 1.676967 GGGGAGAAAGTGGCAGCTG 60.677 63.158 10.11 10.11 0.00 4.24
46 47 2.759795 GGGGAGAAAGTGGCAGCT 59.240 61.111 0.00 0.00 0.00 4.24
47 48 2.361737 GGGGGAGAAAGTGGCAGC 60.362 66.667 0.00 0.00 0.00 5.25
48 49 2.045926 CGGGGGAGAAAGTGGCAG 60.046 66.667 0.00 0.00 0.00 4.85
49 50 4.344865 GCGGGGGAGAAAGTGGCA 62.345 66.667 0.00 0.00 0.00 4.92
90 91 2.487892 CGGTGGCGGCAAATTACC 59.512 61.111 15.50 9.63 0.00 2.85
91 92 2.202557 GCGGTGGCGGCAAATTAC 60.203 61.111 15.50 0.00 0.00 1.89
92 93 2.360600 AGCGGTGGCGGCAAATTA 60.361 55.556 15.50 0.00 46.35 1.40
93 94 4.054825 CAGCGGTGGCGGCAAATT 62.055 61.111 15.50 0.00 46.35 1.82
107 108 2.251371 GGTTTCGCGTGTTCCAGC 59.749 61.111 5.77 0.00 0.00 4.85
108 109 2.549282 CGGTTTCGCGTGTTCCAG 59.451 61.111 5.77 0.00 0.00 3.86
109 110 2.968156 CCGGTTTCGCGTGTTCCA 60.968 61.111 5.77 0.00 34.56 3.53
110 111 3.719144 CCCGGTTTCGCGTGTTCC 61.719 66.667 5.77 4.18 34.56 3.62
111 112 4.379143 GCCCGGTTTCGCGTGTTC 62.379 66.667 5.77 0.00 34.56 3.18
126 127 4.392576 TTTTTAGCACGCGCGGCC 62.393 61.111 35.22 23.44 45.49 6.13
140 141 1.468895 CGTGCGGTAAAAGCGTTTTT 58.531 45.000 14.50 14.50 41.74 1.94
141 142 0.317186 CCGTGCGGTAAAAGCGTTTT 60.317 50.000 2.19 1.29 41.74 2.43
142 143 1.159098 TCCGTGCGGTAAAAGCGTTT 61.159 50.000 10.60 2.53 41.74 3.60
143 144 1.594836 TCCGTGCGGTAAAAGCGTT 60.595 52.632 10.60 0.00 41.74 4.84
144 145 2.029369 TCCGTGCGGTAAAAGCGT 59.971 55.556 10.60 0.00 41.74 5.07
145 146 2.472934 GTCCGTGCGGTAAAAGCG 59.527 61.111 10.60 0.00 42.73 4.68
146 147 2.472934 CGTCCGTGCGGTAAAAGC 59.527 61.111 10.60 0.00 36.47 3.51
147 148 2.472934 GCGTCCGTGCGGTAAAAG 59.527 61.111 10.60 0.00 36.47 2.27
158 159 4.991041 CGTTAAAAGACGCGTCCG 57.009 55.556 34.08 24.57 36.12 4.79
164 165 0.233848 AACAGGCGCGTTAAAAGACG 59.766 50.000 8.43 0.00 45.40 4.18
165 166 1.662026 CCAACAGGCGCGTTAAAAGAC 60.662 52.381 8.43 0.00 0.00 3.01
166 167 0.589223 CCAACAGGCGCGTTAAAAGA 59.411 50.000 8.43 0.00 0.00 2.52
167 168 0.589223 TCCAACAGGCGCGTTAAAAG 59.411 50.000 8.43 0.00 0.00 2.27
168 169 0.589223 CTCCAACAGGCGCGTTAAAA 59.411 50.000 8.43 0.00 0.00 1.52
169 170 0.249953 TCTCCAACAGGCGCGTTAAA 60.250 50.000 8.43 0.00 0.00 1.52
170 171 0.036765 ATCTCCAACAGGCGCGTTAA 60.037 50.000 8.43 0.00 0.00 2.01
171 172 0.739462 CATCTCCAACAGGCGCGTTA 60.739 55.000 8.43 0.00 0.00 3.18
172 173 2.034879 CATCTCCAACAGGCGCGTT 61.035 57.895 8.43 0.00 0.00 4.84
173 174 2.434884 CATCTCCAACAGGCGCGT 60.435 61.111 8.43 0.00 0.00 6.01
174 175 3.869272 GCATCTCCAACAGGCGCG 61.869 66.667 0.00 0.00 0.00 6.86
175 176 2.437359 AGCATCTCCAACAGGCGC 60.437 61.111 0.00 0.00 0.00 6.53
176 177 3.805267 GAGCATCTCCAACAGGCG 58.195 61.111 0.00 0.00 0.00 5.52
187 188 3.533606 TGAGCCTGACTTTAGAGCATC 57.466 47.619 0.00 0.00 0.00 3.91
188 189 3.370315 CCTTGAGCCTGACTTTAGAGCAT 60.370 47.826 0.00 0.00 0.00 3.79
189 190 2.027745 CCTTGAGCCTGACTTTAGAGCA 60.028 50.000 0.00 0.00 0.00 4.26
190 191 2.626840 CCTTGAGCCTGACTTTAGAGC 58.373 52.381 0.00 0.00 0.00 4.09
191 192 2.626840 GCCTTGAGCCTGACTTTAGAG 58.373 52.381 0.00 0.00 34.35 2.43
192 193 2.770164 GCCTTGAGCCTGACTTTAGA 57.230 50.000 0.00 0.00 34.35 2.10
203 204 2.246719 AGACATATTCGGCCTTGAGC 57.753 50.000 0.00 0.00 42.60 4.26
204 205 3.681897 GCATAGACATATTCGGCCTTGAG 59.318 47.826 0.00 0.00 0.00 3.02
205 206 3.557054 GGCATAGACATATTCGGCCTTGA 60.557 47.826 0.00 0.00 37.65 3.02
206 207 2.744202 GGCATAGACATATTCGGCCTTG 59.256 50.000 0.00 0.00 37.65 3.61
207 208 2.290323 GGGCATAGACATATTCGGCCTT 60.290 50.000 0.00 0.00 39.45 4.35
208 209 1.279271 GGGCATAGACATATTCGGCCT 59.721 52.381 0.00 0.00 39.45 5.19
209 210 1.003118 TGGGCATAGACATATTCGGCC 59.997 52.381 0.00 0.00 39.03 6.13
210 211 2.472695 TGGGCATAGACATATTCGGC 57.527 50.000 0.00 0.00 0.00 5.54
211 212 3.748048 CAGTTGGGCATAGACATATTCGG 59.252 47.826 0.00 0.00 0.00 4.30
212 213 3.748048 CCAGTTGGGCATAGACATATTCG 59.252 47.826 0.00 0.00 0.00 3.34
213 214 4.718961 ACCAGTTGGGCATAGACATATTC 58.281 43.478 2.79 0.00 42.05 1.75
214 215 4.796110 ACCAGTTGGGCATAGACATATT 57.204 40.909 2.79 0.00 42.05 1.28
215 216 4.796110 AACCAGTTGGGCATAGACATAT 57.204 40.909 2.79 0.00 42.05 1.78
216 217 4.442332 CGTAACCAGTTGGGCATAGACATA 60.442 45.833 2.79 0.00 42.05 2.29
217 218 3.681594 CGTAACCAGTTGGGCATAGACAT 60.682 47.826 2.79 0.00 42.05 3.06
218 219 2.354303 CGTAACCAGTTGGGCATAGACA 60.354 50.000 2.79 0.00 42.05 3.41
219 220 2.277084 CGTAACCAGTTGGGCATAGAC 58.723 52.381 2.79 0.00 42.05 2.59
220 221 1.406341 GCGTAACCAGTTGGGCATAGA 60.406 52.381 2.79 0.00 42.05 1.98
221 222 1.014352 GCGTAACCAGTTGGGCATAG 58.986 55.000 2.79 0.00 42.05 2.23
222 223 0.741574 CGCGTAACCAGTTGGGCATA 60.742 55.000 0.00 0.00 42.05 3.14
223 224 2.038269 CGCGTAACCAGTTGGGCAT 61.038 57.895 0.00 0.00 42.05 4.40
224 225 2.666862 CGCGTAACCAGTTGGGCA 60.667 61.111 0.00 0.00 42.05 5.36
225 226 4.097863 GCGCGTAACCAGTTGGGC 62.098 66.667 8.43 0.00 42.05 5.36
226 227 3.784412 CGCGCGTAACCAGTTGGG 61.784 66.667 24.19 0.00 44.81 4.12
227 228 4.439472 GCGCGCGTAACCAGTTGG 62.439 66.667 32.35 0.00 42.17 3.77
228 229 3.230005 TTGCGCGCGTAACCAGTTG 62.230 57.895 29.15 0.00 0.00 3.16
229 230 2.968156 TTGCGCGCGTAACCAGTT 60.968 55.556 29.15 0.00 0.00 3.16
230 231 3.708734 GTTGCGCGCGTAACCAGT 61.709 61.111 41.37 0.00 35.24 4.00
231 232 3.348967 GAGTTGCGCGCGTAACCAG 62.349 63.158 44.72 15.39 40.71 4.00
232 233 3.408020 GAGTTGCGCGCGTAACCA 61.408 61.111 44.72 27.89 40.71 3.67
233 234 4.143363 GGAGTTGCGCGCGTAACC 62.143 66.667 44.72 36.44 40.71 2.85
234 235 2.235536 ATTGGAGTTGCGCGCGTAAC 62.236 55.000 43.15 43.15 40.25 2.50
235 236 1.962092 GATTGGAGTTGCGCGCGTAA 61.962 55.000 29.15 29.15 0.00 3.18
236 237 2.433491 ATTGGAGTTGCGCGCGTA 60.433 55.556 32.35 26.20 0.00 4.42
237 238 3.788766 GATTGGAGTTGCGCGCGT 61.789 61.111 32.35 13.96 0.00 6.01
238 239 4.520846 GGATTGGAGTTGCGCGCG 62.521 66.667 28.44 28.44 0.00 6.86
239 240 4.179579 GGGATTGGAGTTGCGCGC 62.180 66.667 27.26 27.26 0.00 6.86
240 241 2.436646 AGGGATTGGAGTTGCGCG 60.437 61.111 0.00 0.00 0.00 6.86
241 242 3.056313 GCAGGGATTGGAGTTGCGC 62.056 63.158 0.00 0.00 0.00 6.09
242 243 2.409870 GGCAGGGATTGGAGTTGCG 61.410 63.158 0.00 0.00 35.68 4.85
243 244 0.685458 ATGGCAGGGATTGGAGTTGC 60.685 55.000 0.00 0.00 0.00 4.17
244 245 1.479323 CAATGGCAGGGATTGGAGTTG 59.521 52.381 0.00 0.00 0.00 3.16
245 246 1.856629 CAATGGCAGGGATTGGAGTT 58.143 50.000 0.00 0.00 0.00 3.01
246 247 0.685458 GCAATGGCAGGGATTGGAGT 60.685 55.000 0.00 0.00 40.72 3.85
247 248 1.397390 GGCAATGGCAGGGATTGGAG 61.397 60.000 0.58 0.00 43.71 3.86
248 249 1.381599 GGCAATGGCAGGGATTGGA 60.382 57.895 0.58 0.00 43.71 3.53
249 250 2.437396 GGGCAATGGCAGGGATTGG 61.437 63.158 9.51 0.00 43.71 3.16
250 251 2.437396 GGGGCAATGGCAGGGATTG 61.437 63.158 9.51 0.00 43.71 2.67
251 252 2.041612 GGGGCAATGGCAGGGATT 60.042 61.111 9.51 0.00 43.71 3.01
252 253 4.162009 GGGGGCAATGGCAGGGAT 62.162 66.667 9.51 0.00 43.71 3.85
254 255 4.403502 AAGGGGGCAATGGCAGGG 62.404 66.667 9.51 0.00 43.71 4.45
255 256 2.761213 GAAGGGGGCAATGGCAGG 60.761 66.667 9.51 0.00 43.71 4.85
256 257 1.382146 ATGAAGGGGGCAATGGCAG 60.382 57.895 9.51 0.00 43.71 4.85
257 258 1.686455 CATGAAGGGGGCAATGGCA 60.686 57.895 9.51 0.00 43.71 4.92
258 259 1.686800 ACATGAAGGGGGCAATGGC 60.687 57.895 0.00 0.00 40.13 4.40
259 260 1.332144 CCACATGAAGGGGGCAATGG 61.332 60.000 0.00 0.00 37.04 3.16
260 261 0.324552 TCCACATGAAGGGGGCAATG 60.325 55.000 0.00 0.00 42.98 2.82
261 262 0.638292 ATCCACATGAAGGGGGCAAT 59.362 50.000 0.00 0.00 42.98 3.56
262 263 0.324552 CATCCACATGAAGGGGGCAA 60.325 55.000 0.00 0.00 42.98 4.52
263 264 1.307309 CATCCACATGAAGGGGGCA 59.693 57.895 0.00 0.00 42.98 5.36
264 265 2.129785 GCATCCACATGAAGGGGGC 61.130 63.158 0.00 5.01 42.98 5.80
265 266 1.825191 CGCATCCACATGAAGGGGG 60.825 63.158 0.00 0.00 42.98 5.40
266 267 0.816825 CTCGCATCCACATGAAGGGG 60.817 60.000 0.00 0.00 44.73 4.79
267 268 1.442526 GCTCGCATCCACATGAAGGG 61.443 60.000 0.00 0.00 30.57 3.95
268 269 1.442526 GGCTCGCATCCACATGAAGG 61.443 60.000 0.00 0.41 30.57 3.46
269 270 1.442526 GGGCTCGCATCCACATGAAG 61.443 60.000 0.00 0.00 30.57 3.02
270 271 1.451927 GGGCTCGCATCCACATGAA 60.452 57.895 0.00 0.00 30.57 2.57
271 272 1.913951 AAGGGCTCGCATCCACATGA 61.914 55.000 0.00 0.00 30.57 3.07
272 273 1.452651 AAGGGCTCGCATCCACATG 60.453 57.895 0.00 0.00 0.00 3.21
273 274 1.452651 CAAGGGCTCGCATCCACAT 60.453 57.895 0.00 0.00 0.00 3.21
274 275 2.046023 CAAGGGCTCGCATCCACA 60.046 61.111 0.00 0.00 0.00 4.17
275 276 3.512516 GCAAGGGCTCGCATCCAC 61.513 66.667 0.00 0.00 36.96 4.02
276 277 3.348554 ATGCAAGGGCTCGCATCCA 62.349 57.895 0.00 0.00 45.57 3.41
277 278 2.517875 ATGCAAGGGCTCGCATCC 60.518 61.111 0.00 0.00 45.57 3.51
278 279 2.117156 ACATGCAAGGGCTCGCATC 61.117 57.895 0.00 0.00 45.57 3.91
280 281 3.057548 CACATGCAAGGGCTCGCA 61.058 61.111 0.00 0.00 43.45 5.10
281 282 4.487412 GCACATGCAAGGGCTCGC 62.487 66.667 9.34 0.00 41.91 5.03
297 298 1.002468 GAGAGAGAGAGAGCGTCATGC 60.002 57.143 0.00 0.00 46.98 4.06
298 299 2.564771 AGAGAGAGAGAGAGCGTCATG 58.435 52.381 0.00 0.00 0.00 3.07
299 300 3.206150 GAAGAGAGAGAGAGAGCGTCAT 58.794 50.000 0.00 0.00 0.00 3.06
300 301 2.627945 GAAGAGAGAGAGAGAGCGTCA 58.372 52.381 0.00 0.00 0.00 4.35
301 302 1.940613 GGAAGAGAGAGAGAGAGCGTC 59.059 57.143 0.00 0.00 0.00 5.19
302 303 1.559682 AGGAAGAGAGAGAGAGAGCGT 59.440 52.381 0.00 0.00 0.00 5.07
303 304 1.942657 CAGGAAGAGAGAGAGAGAGCG 59.057 57.143 0.00 0.00 0.00 5.03
304 305 2.684881 CACAGGAAGAGAGAGAGAGAGC 59.315 54.545 0.00 0.00 0.00 4.09
305 306 2.684881 GCACAGGAAGAGAGAGAGAGAG 59.315 54.545 0.00 0.00 0.00 3.20
306 307 2.040947 TGCACAGGAAGAGAGAGAGAGA 59.959 50.000 0.00 0.00 0.00 3.10
307 308 2.164219 GTGCACAGGAAGAGAGAGAGAG 59.836 54.545 13.17 0.00 0.00 3.20
308 309 2.166829 GTGCACAGGAAGAGAGAGAGA 58.833 52.381 13.17 0.00 0.00 3.10
309 310 1.891811 TGTGCACAGGAAGAGAGAGAG 59.108 52.381 17.42 0.00 0.00 3.20
310 311 1.615883 GTGTGCACAGGAAGAGAGAGA 59.384 52.381 22.40 0.00 0.00 3.10
311 312 1.342496 TGTGTGCACAGGAAGAGAGAG 59.658 52.381 22.40 0.00 36.21 3.20
312 313 1.069204 GTGTGTGCACAGGAAGAGAGA 59.931 52.381 22.40 0.00 44.64 3.10
313 314 1.506493 GTGTGTGCACAGGAAGAGAG 58.494 55.000 22.40 0.00 44.64 3.20
314 315 3.686622 GTGTGTGCACAGGAAGAGA 57.313 52.632 22.40 0.00 44.64 3.10
323 324 0.317269 GCATGTGTCAGTGTGTGCAC 60.317 55.000 10.75 10.75 45.57 4.57
324 325 0.747283 TGCATGTGTCAGTGTGTGCA 60.747 50.000 0.00 0.00 39.94 4.57
325 326 0.594602 ATGCATGTGTCAGTGTGTGC 59.405 50.000 0.00 0.00 0.00 4.57
326 327 1.605232 ACATGCATGTGTCAGTGTGTG 59.395 47.619 30.92 2.24 40.03 3.82
327 328 1.875514 GACATGCATGTGTCAGTGTGT 59.124 47.619 35.92 9.71 46.04 3.72
328 329 2.606717 GACATGCATGTGTCAGTGTG 57.393 50.000 35.92 6.03 46.04 3.82
334 335 5.106594 TGTTGATGTAAGACATGCATGTGTC 60.107 40.000 35.92 23.36 46.90 3.67
335 336 4.761227 TGTTGATGTAAGACATGCATGTGT 59.239 37.500 35.92 29.34 39.27 3.72
336 337 5.090757 GTGTTGATGTAAGACATGCATGTG 58.909 41.667 35.92 11.85 39.27 3.21
337 338 4.761227 TGTGTTGATGTAAGACATGCATGT 59.239 37.500 31.82 31.82 39.27 3.21
338 339 5.299582 TGTGTTGATGTAAGACATGCATG 57.700 39.130 25.09 25.09 39.27 4.06
344 345 5.706833 AGCATTGATGTGTTGATGTAAGACA 59.293 36.000 0.00 0.00 45.29 3.41
345 346 6.187125 AGCATTGATGTGTTGATGTAAGAC 57.813 37.500 0.00 0.00 33.40 3.01
346 347 6.822667 AAGCATTGATGTGTTGATGTAAGA 57.177 33.333 0.00 0.00 0.00 2.10
347 348 7.755591 AGTAAGCATTGATGTGTTGATGTAAG 58.244 34.615 0.00 0.00 0.00 2.34
348 349 7.686438 AGTAAGCATTGATGTGTTGATGTAA 57.314 32.000 0.00 0.00 0.00 2.41
349 350 7.686438 AAGTAAGCATTGATGTGTTGATGTA 57.314 32.000 0.00 0.00 0.00 2.29
350 351 6.579666 AAGTAAGCATTGATGTGTTGATGT 57.420 33.333 0.00 0.00 0.00 3.06
351 352 9.229784 GATAAAGTAAGCATTGATGTGTTGATG 57.770 33.333 0.00 0.00 0.00 3.07
352 353 9.182214 AGATAAAGTAAGCATTGATGTGTTGAT 57.818 29.630 0.00 0.00 0.00 2.57
353 354 8.565896 AGATAAAGTAAGCATTGATGTGTTGA 57.434 30.769 0.00 0.00 0.00 3.18
354 355 9.282247 GAAGATAAAGTAAGCATTGATGTGTTG 57.718 33.333 0.00 0.00 0.00 3.33
355 356 8.462016 GGAAGATAAAGTAAGCATTGATGTGTT 58.538 33.333 0.00 0.00 0.00 3.32
356 357 7.067494 GGGAAGATAAAGTAAGCATTGATGTGT 59.933 37.037 0.00 0.00 0.00 3.72
357 358 7.284034 AGGGAAGATAAAGTAAGCATTGATGTG 59.716 37.037 0.00 0.00 0.00 3.21
358 359 7.349598 AGGGAAGATAAAGTAAGCATTGATGT 58.650 34.615 0.00 0.00 0.00 3.06
359 360 7.718753 AGAGGGAAGATAAAGTAAGCATTGATG 59.281 37.037 0.00 0.00 0.00 3.07
360 361 7.810260 AGAGGGAAGATAAAGTAAGCATTGAT 58.190 34.615 0.00 0.00 0.00 2.57
361 362 7.200434 AGAGGGAAGATAAAGTAAGCATTGA 57.800 36.000 0.00 0.00 0.00 2.57
362 363 6.484977 GGAGAGGGAAGATAAAGTAAGCATTG 59.515 42.308 0.00 0.00 0.00 2.82
363 364 6.388394 AGGAGAGGGAAGATAAAGTAAGCATT 59.612 38.462 0.00 0.00 0.00 3.56
364 365 5.908247 AGGAGAGGGAAGATAAAGTAAGCAT 59.092 40.000 0.00 0.00 0.00 3.79
365 366 5.281314 AGGAGAGGGAAGATAAAGTAAGCA 58.719 41.667 0.00 0.00 0.00 3.91
366 367 5.600898 AGAGGAGAGGGAAGATAAAGTAAGC 59.399 44.000 0.00 0.00 0.00 3.09
367 368 8.635328 GTTAGAGGAGAGGGAAGATAAAGTAAG 58.365 40.741 0.00 0.00 0.00 2.34
368 369 8.345306 AGTTAGAGGAGAGGGAAGATAAAGTAA 58.655 37.037 0.00 0.00 0.00 2.24
369 370 7.884891 AGTTAGAGGAGAGGGAAGATAAAGTA 58.115 38.462 0.00 0.00 0.00 2.24
370 371 6.747931 AGTTAGAGGAGAGGGAAGATAAAGT 58.252 40.000 0.00 0.00 0.00 2.66
371 372 6.266786 GGAGTTAGAGGAGAGGGAAGATAAAG 59.733 46.154 0.00 0.00 0.00 1.85
372 373 6.137559 GGAGTTAGAGGAGAGGGAAGATAAA 58.862 44.000 0.00 0.00 0.00 1.40
373 374 5.195960 TGGAGTTAGAGGAGAGGGAAGATAA 59.804 44.000 0.00 0.00 0.00 1.75
374 375 4.732443 TGGAGTTAGAGGAGAGGGAAGATA 59.268 45.833 0.00 0.00 0.00 1.98
375 376 3.533907 TGGAGTTAGAGGAGAGGGAAGAT 59.466 47.826 0.00 0.00 0.00 2.40
376 377 2.927007 TGGAGTTAGAGGAGAGGGAAGA 59.073 50.000 0.00 0.00 0.00 2.87
377 378 3.390175 TGGAGTTAGAGGAGAGGGAAG 57.610 52.381 0.00 0.00 0.00 3.46
378 379 3.272285 TGATGGAGTTAGAGGAGAGGGAA 59.728 47.826 0.00 0.00 0.00 3.97
379 380 2.859404 TGATGGAGTTAGAGGAGAGGGA 59.141 50.000 0.00 0.00 0.00 4.20
380 381 2.962421 GTGATGGAGTTAGAGGAGAGGG 59.038 54.545 0.00 0.00 0.00 4.30
381 382 3.909732 AGTGATGGAGTTAGAGGAGAGG 58.090 50.000 0.00 0.00 0.00 3.69
382 383 5.930837 AAAGTGATGGAGTTAGAGGAGAG 57.069 43.478 0.00 0.00 0.00 3.20
383 384 7.792364 TTAAAAGTGATGGAGTTAGAGGAGA 57.208 36.000 0.00 0.00 0.00 3.71
384 385 9.454859 AAATTAAAAGTGATGGAGTTAGAGGAG 57.545 33.333 0.00 0.00 0.00 3.69
385 386 9.807921 AAAATTAAAAGTGATGGAGTTAGAGGA 57.192 29.630 0.00 0.00 0.00 3.71
407 408 9.783081 AGCCATCTAAAATTGTCAAAAGAAAAT 57.217 25.926 0.00 0.00 0.00 1.82
408 409 9.260002 GAGCCATCTAAAATTGTCAAAAGAAAA 57.740 29.630 0.00 0.00 0.00 2.29
409 410 8.420222 TGAGCCATCTAAAATTGTCAAAAGAAA 58.580 29.630 0.00 0.00 0.00 2.52
410 411 7.950512 TGAGCCATCTAAAATTGTCAAAAGAA 58.049 30.769 0.00 0.00 0.00 2.52
411 412 7.523293 TGAGCCATCTAAAATTGTCAAAAGA 57.477 32.000 0.00 0.00 0.00 2.52
414 415 9.412460 AGATATGAGCCATCTAAAATTGTCAAA 57.588 29.630 0.00 0.00 30.89 2.69
415 416 8.985315 AGATATGAGCCATCTAAAATTGTCAA 57.015 30.769 0.00 0.00 30.89 3.18
416 417 8.985315 AAGATATGAGCCATCTAAAATTGTCA 57.015 30.769 0.00 0.00 32.40 3.58
423 424 9.693739 TGGTTTTAAAGATATGAGCCATCTAAA 57.306 29.630 0.00 0.00 32.40 1.85
424 425 9.693739 TTGGTTTTAAAGATATGAGCCATCTAA 57.306 29.630 0.00 0.00 32.40 2.10
425 426 9.693739 TTTGGTTTTAAAGATATGAGCCATCTA 57.306 29.630 0.00 0.00 32.40 1.98
426 427 8.593945 TTTGGTTTTAAAGATATGAGCCATCT 57.406 30.769 0.00 0.00 34.15 2.90
427 428 9.822185 ATTTTGGTTTTAAAGATATGAGCCATC 57.178 29.630 0.00 0.00 0.00 3.51
448 449 9.915690 GCAAAAAGTTTCAAAAACGTAATTTTG 57.084 25.926 16.01 16.01 46.66 2.44
449 450 9.665264 TGCAAAAAGTTTCAAAAACGTAATTTT 57.335 22.222 0.00 0.00 42.55 1.82
450 451 9.833182 ATGCAAAAAGTTTCAAAAACGTAATTT 57.167 22.222 0.00 0.00 0.00 1.82
455 456 9.271738 CAAATATGCAAAAAGTTTCAAAAACGT 57.728 25.926 0.00 0.00 0.00 3.99
456 457 9.483062 TCAAATATGCAAAAAGTTTCAAAAACG 57.517 25.926 0.00 0.00 0.00 3.60
461 462 8.538856 CGAGTTCAAATATGCAAAAAGTTTCAA 58.461 29.630 0.00 0.00 0.00 2.69
462 463 7.704472 ACGAGTTCAAATATGCAAAAAGTTTCA 59.296 29.630 0.00 0.00 0.00 2.69
463 464 7.998212 CACGAGTTCAAATATGCAAAAAGTTTC 59.002 33.333 0.00 0.00 0.00 2.78
464 465 7.704472 TCACGAGTTCAAATATGCAAAAAGTTT 59.296 29.630 0.00 0.00 0.00 2.66
465 466 7.167468 GTCACGAGTTCAAATATGCAAAAAGTT 59.833 33.333 0.00 0.00 0.00 2.66
466 467 6.636850 GTCACGAGTTCAAATATGCAAAAAGT 59.363 34.615 0.00 0.00 0.00 2.66
467 468 6.183359 CGTCACGAGTTCAAATATGCAAAAAG 60.183 38.462 0.00 0.00 0.00 2.27
468 469 5.623264 CGTCACGAGTTCAAATATGCAAAAA 59.377 36.000 0.00 0.00 0.00 1.94
469 470 5.143660 CGTCACGAGTTCAAATATGCAAAA 58.856 37.500 0.00 0.00 0.00 2.44
470 471 4.707563 CGTCACGAGTTCAAATATGCAAA 58.292 39.130 0.00 0.00 0.00 3.68
471 472 3.424302 GCGTCACGAGTTCAAATATGCAA 60.424 43.478 0.00 0.00 0.00 4.08
472 473 2.093625 GCGTCACGAGTTCAAATATGCA 59.906 45.455 0.00 0.00 0.00 3.96
473 474 2.536928 GGCGTCACGAGTTCAAATATGC 60.537 50.000 0.00 0.00 0.00 3.14
474 475 2.670905 TGGCGTCACGAGTTCAAATATG 59.329 45.455 0.00 0.00 0.00 1.78
475 476 2.967362 TGGCGTCACGAGTTCAAATAT 58.033 42.857 0.00 0.00 0.00 1.28
476 477 2.442212 TGGCGTCACGAGTTCAAATA 57.558 45.000 0.00 0.00 0.00 1.40
477 478 1.531149 CTTGGCGTCACGAGTTCAAAT 59.469 47.619 0.00 0.00 0.00 2.32
478 479 0.934496 CTTGGCGTCACGAGTTCAAA 59.066 50.000 0.00 0.00 0.00 2.69
479 480 1.495584 GCTTGGCGTCACGAGTTCAA 61.496 55.000 0.00 0.00 0.00 2.69
480 481 1.954146 GCTTGGCGTCACGAGTTCA 60.954 57.895 0.00 0.00 0.00 3.18
481 482 1.954146 TGCTTGGCGTCACGAGTTC 60.954 57.895 0.00 0.00 0.00 3.01
482 483 2.108157 TGCTTGGCGTCACGAGTT 59.892 55.556 0.00 0.00 0.00 3.01
483 484 2.644555 AAGTGCTTGGCGTCACGAGT 62.645 55.000 0.00 0.00 38.19 4.18
484 485 1.891060 GAAGTGCTTGGCGTCACGAG 61.891 60.000 0.00 0.00 38.19 4.18
485 486 1.954146 GAAGTGCTTGGCGTCACGA 60.954 57.895 0.00 0.00 38.19 4.35
486 487 1.498865 AAGAAGTGCTTGGCGTCACG 61.499 55.000 0.00 0.00 38.19 4.35
487 488 2.321213 AAGAAGTGCTTGGCGTCAC 58.679 52.632 0.00 0.00 34.93 3.67
488 489 4.876701 AAGAAGTGCTTGGCGTCA 57.123 50.000 0.00 0.00 34.93 4.35
495 496 7.744087 TCACAAACATATACAAGAAGTGCTT 57.256 32.000 0.00 0.00 37.29 3.91
496 497 7.928307 ATCACAAACATATACAAGAAGTGCT 57.072 32.000 0.00 0.00 0.00 4.40
497 498 9.655769 CATATCACAAACATATACAAGAAGTGC 57.344 33.333 0.00 0.00 0.00 4.40
499 500 9.905713 ACCATATCACAAACATATACAAGAAGT 57.094 29.630 0.00 0.00 0.00 3.01
508 509 9.866655 ACCTCAATTACCATATCACAAACATAT 57.133 29.630 0.00 0.00 0.00 1.78
509 510 9.119418 CACCTCAATTACCATATCACAAACATA 57.881 33.333 0.00 0.00 0.00 2.29
510 511 7.615365 ACACCTCAATTACCATATCACAAACAT 59.385 33.333 0.00 0.00 0.00 2.71
511 512 6.945435 ACACCTCAATTACCATATCACAAACA 59.055 34.615 0.00 0.00 0.00 2.83
512 513 7.391148 ACACCTCAATTACCATATCACAAAC 57.609 36.000 0.00 0.00 0.00 2.93
513 514 6.601613 GGACACCTCAATTACCATATCACAAA 59.398 38.462 0.00 0.00 0.00 2.83
514 515 6.119536 GGACACCTCAATTACCATATCACAA 58.880 40.000 0.00 0.00 0.00 3.33
515 516 5.680619 GGACACCTCAATTACCATATCACA 58.319 41.667 0.00 0.00 0.00 3.58
516 517 4.750098 CGGACACCTCAATTACCATATCAC 59.250 45.833 0.00 0.00 0.00 3.06
517 518 4.202315 CCGGACACCTCAATTACCATATCA 60.202 45.833 0.00 0.00 0.00 2.15
518 519 4.039973 TCCGGACACCTCAATTACCATATC 59.960 45.833 0.00 0.00 0.00 1.63
519 520 3.971305 TCCGGACACCTCAATTACCATAT 59.029 43.478 0.00 0.00 0.00 1.78
520 521 3.376636 TCCGGACACCTCAATTACCATA 58.623 45.455 0.00 0.00 0.00 2.74
521 522 2.193127 TCCGGACACCTCAATTACCAT 58.807 47.619 0.00 0.00 0.00 3.55
522 523 1.646912 TCCGGACACCTCAATTACCA 58.353 50.000 0.00 0.00 0.00 3.25
523 524 2.093128 ACATCCGGACACCTCAATTACC 60.093 50.000 6.12 0.00 0.00 2.85
524 525 2.936498 CACATCCGGACACCTCAATTAC 59.064 50.000 6.12 0.00 0.00 1.89
525 526 2.093181 CCACATCCGGACACCTCAATTA 60.093 50.000 6.12 0.00 0.00 1.40
526 527 1.340017 CCACATCCGGACACCTCAATT 60.340 52.381 6.12 0.00 0.00 2.32
527 528 0.253044 CCACATCCGGACACCTCAAT 59.747 55.000 6.12 0.00 0.00 2.57
528 529 0.834261 TCCACATCCGGACACCTCAA 60.834 55.000 6.12 0.00 0.00 3.02
529 530 0.617535 ATCCACATCCGGACACCTCA 60.618 55.000 6.12 0.00 38.07 3.86
530 531 0.541863 AATCCACATCCGGACACCTC 59.458 55.000 6.12 0.00 38.07 3.85
531 532 1.485066 GTAATCCACATCCGGACACCT 59.515 52.381 6.12 0.00 38.07 4.00
532 533 1.208535 TGTAATCCACATCCGGACACC 59.791 52.381 6.12 0.00 38.07 4.16
533 534 2.684001 TGTAATCCACATCCGGACAC 57.316 50.000 6.12 0.00 38.07 3.67
542 543 4.404073 GCACCCCAAATAATGTAATCCACA 59.596 41.667 0.00 0.00 42.69 4.17
543 544 4.202212 GGCACCCCAAATAATGTAATCCAC 60.202 45.833 0.00 0.00 0.00 4.02
544 545 3.964031 GGCACCCCAAATAATGTAATCCA 59.036 43.478 0.00 0.00 0.00 3.41
545 546 4.600692 GGCACCCCAAATAATGTAATCC 57.399 45.455 0.00 0.00 0.00 3.01
578 579 1.059838 GTAACGGATTTGCGCGTCC 59.940 57.895 8.43 14.28 0.00 4.79
579 580 1.059838 GGTAACGGATTTGCGCGTC 59.940 57.895 8.43 0.00 0.00 5.19
580 581 0.952010 AAGGTAACGGATTTGCGCGT 60.952 50.000 8.43 0.00 46.39 6.01
581 582 1.000884 TAAGGTAACGGATTTGCGCG 58.999 50.000 0.00 0.00 46.39 6.86
582 583 3.474693 TTTAAGGTAACGGATTTGCGC 57.525 42.857 0.00 0.00 46.39 6.09
583 584 3.789224 GCATTTAAGGTAACGGATTTGCG 59.211 43.478 0.00 0.00 46.39 4.85
584 585 4.109766 GGCATTTAAGGTAACGGATTTGC 58.890 43.478 0.00 0.00 46.39 3.68
585 586 4.142556 ACGGCATTTAAGGTAACGGATTTG 60.143 41.667 0.00 0.00 46.39 2.32
586 587 4.011698 ACGGCATTTAAGGTAACGGATTT 58.988 39.130 0.00 0.00 46.39 2.17
587 588 3.375922 CACGGCATTTAAGGTAACGGATT 59.624 43.478 0.00 0.00 46.39 3.01
588 589 2.940410 CACGGCATTTAAGGTAACGGAT 59.060 45.455 0.00 0.00 46.39 4.18
589 590 2.348660 CACGGCATTTAAGGTAACGGA 58.651 47.619 0.00 0.00 46.39 4.69
590 591 1.399089 CCACGGCATTTAAGGTAACGG 59.601 52.381 0.00 0.00 46.39 4.44
591 592 2.094734 GTCCACGGCATTTAAGGTAACG 59.905 50.000 0.00 0.00 46.39 3.18
592 593 2.094734 CGTCCACGGCATTTAAGGTAAC 59.905 50.000 0.00 0.00 35.37 2.50
593 594 2.348660 CGTCCACGGCATTTAAGGTAA 58.651 47.619 0.00 0.00 35.37 2.85
594 595 2.008045 GCGTCCACGGCATTTAAGGTA 61.008 52.381 0.55 0.00 40.23 3.08
595 596 1.303091 GCGTCCACGGCATTTAAGGT 61.303 55.000 0.55 0.00 40.23 3.50
596 597 1.427819 GCGTCCACGGCATTTAAGG 59.572 57.895 0.55 0.00 40.23 2.69
597 598 1.060308 CGCGTCCACGGCATTTAAG 59.940 57.895 0.00 0.00 40.23 1.85
598 599 1.628447 GACGCGTCCACGGCATTTAA 61.628 55.000 28.61 0.00 42.03 1.52
599 600 2.048033 ACGCGTCCACGGCATTTA 60.048 55.556 5.58 0.00 40.23 1.40
600 601 3.419759 GACGCGTCCACGGCATTT 61.420 61.111 28.61 0.00 42.03 2.32
601 602 4.373116 AGACGCGTCCACGGCATT 62.373 61.111 34.08 11.69 46.03 3.56
605 606 4.129737 ATCCAGACGCGTCCACGG 62.130 66.667 34.08 29.45 40.23 4.94
606 607 2.579787 GATCCAGACGCGTCCACG 60.580 66.667 34.08 22.47 43.27 4.94
607 608 2.579787 CGATCCAGACGCGTCCAC 60.580 66.667 34.08 19.23 0.00 4.02
608 609 3.822192 CCGATCCAGACGCGTCCA 61.822 66.667 34.08 19.62 0.00 4.02
609 610 2.351336 AATCCGATCCAGACGCGTCC 62.351 60.000 34.08 18.08 0.00 4.79
610 611 0.527817 AAATCCGATCCAGACGCGTC 60.528 55.000 31.30 31.30 0.00 5.19
611 612 0.806102 CAAATCCGATCCAGACGCGT 60.806 55.000 13.85 13.85 0.00 6.01
612 613 0.527600 TCAAATCCGATCCAGACGCG 60.528 55.000 3.53 3.53 0.00 6.01
613 614 0.931005 GTCAAATCCGATCCAGACGC 59.069 55.000 0.00 0.00 0.00 5.19
614 615 2.293677 TGTCAAATCCGATCCAGACG 57.706 50.000 0.00 0.00 0.00 4.18
615 616 3.600388 ACTTGTCAAATCCGATCCAGAC 58.400 45.455 0.00 0.00 0.00 3.51
616 617 3.369471 GGACTTGTCAAATCCGATCCAGA 60.369 47.826 0.00 0.00 0.00 3.86
617 618 2.939103 GGACTTGTCAAATCCGATCCAG 59.061 50.000 0.00 0.00 0.00 3.86
618 619 2.985896 GGACTTGTCAAATCCGATCCA 58.014 47.619 0.00 0.00 0.00 3.41
624 625 0.804989 CAGCCGGACTTGTCAAATCC 59.195 55.000 5.05 2.82 0.00 3.01
625 626 1.523758 ACAGCCGGACTTGTCAAATC 58.476 50.000 5.05 0.00 0.00 2.17
626 627 2.301870 TCTACAGCCGGACTTGTCAAAT 59.698 45.455 5.05 0.00 0.00 2.32
627 628 1.689813 TCTACAGCCGGACTTGTCAAA 59.310 47.619 5.05 0.00 0.00 2.69
628 629 1.334160 TCTACAGCCGGACTTGTCAA 58.666 50.000 5.05 0.00 0.00 3.18
629 630 1.204704 CATCTACAGCCGGACTTGTCA 59.795 52.381 5.05 0.00 0.00 3.58
630 631 1.927895 CATCTACAGCCGGACTTGTC 58.072 55.000 5.05 0.00 0.00 3.18
631 632 0.108138 GCATCTACAGCCGGACTTGT 60.108 55.000 5.05 8.91 0.00 3.16
632 633 0.176680 AGCATCTACAGCCGGACTTG 59.823 55.000 5.05 1.91 0.00 3.16
633 634 0.905357 AAGCATCTACAGCCGGACTT 59.095 50.000 5.05 0.00 0.00 3.01
634 635 1.776662 TAAGCATCTACAGCCGGACT 58.223 50.000 5.05 0.00 0.00 3.85
635 636 2.596904 TTAAGCATCTACAGCCGGAC 57.403 50.000 5.05 0.00 0.00 4.79
636 637 2.500098 ACTTTAAGCATCTACAGCCGGA 59.500 45.455 5.05 0.00 0.00 5.14
637 638 2.866762 GACTTTAAGCATCTACAGCCGG 59.133 50.000 0.00 0.00 0.00 6.13
638 639 2.535984 CGACTTTAAGCATCTACAGCCG 59.464 50.000 0.00 0.00 0.00 5.52
639 640 2.866762 CCGACTTTAAGCATCTACAGCC 59.133 50.000 0.00 0.00 0.00 4.85
640 641 2.866762 CCCGACTTTAAGCATCTACAGC 59.133 50.000 0.00 0.00 0.00 4.40
641 642 4.124851 ACCCGACTTTAAGCATCTACAG 57.875 45.455 0.00 0.00 0.00 2.74
642 643 4.020928 TGAACCCGACTTTAAGCATCTACA 60.021 41.667 0.00 0.00 0.00 2.74
643 644 4.501071 TGAACCCGACTTTAAGCATCTAC 58.499 43.478 0.00 0.00 0.00 2.59
644 645 4.811969 TGAACCCGACTTTAAGCATCTA 57.188 40.909 0.00 0.00 0.00 1.98
645 646 3.695830 TGAACCCGACTTTAAGCATCT 57.304 42.857 0.00 0.00 0.00 2.90
646 647 3.127030 CCTTGAACCCGACTTTAAGCATC 59.873 47.826 0.00 0.00 0.00 3.91
647 648 3.081804 CCTTGAACCCGACTTTAAGCAT 58.918 45.455 0.00 0.00 0.00 3.79
648 649 2.500229 CCTTGAACCCGACTTTAAGCA 58.500 47.619 0.00 0.00 0.00 3.91
649 650 1.199327 GCCTTGAACCCGACTTTAAGC 59.801 52.381 0.00 0.00 0.00 3.09
650 651 2.500229 TGCCTTGAACCCGACTTTAAG 58.500 47.619 0.00 0.00 0.00 1.85
651 652 2.642154 TGCCTTGAACCCGACTTTAA 57.358 45.000 0.00 0.00 0.00 1.52
662 663 8.918202 TTTACTTTTAGAGAGAATGCCTTGAA 57.082 30.769 0.00 0.00 0.00 2.69
683 684 5.741982 CAGCGTAATGTGGCCTAAAATTTAC 59.258 40.000 3.32 3.24 0.00 2.01
684 685 5.648526 TCAGCGTAATGTGGCCTAAAATTTA 59.351 36.000 3.32 0.00 0.00 1.40
702 703 0.904649 TCCATCCAACTGATCAGCGT 59.095 50.000 22.83 8.18 0.00 5.07
728 729 1.756561 GTGTGTGCTGGTTTGGGGT 60.757 57.895 0.00 0.00 0.00 4.95
751 752 1.523758 CTTTGTACCACCTGCTGGAC 58.476 55.000 17.64 4.42 43.95 4.02
839 840 5.293569 ACACCTATACAAAATTAGCACGCTC 59.706 40.000 0.00 0.00 0.00 5.03
845 846 7.590279 ACACAACACACCTATACAAAATTAGC 58.410 34.615 0.00 0.00 0.00 3.09
851 852 5.450688 GGCAAACACAACACACCTATACAAA 60.451 40.000 0.00 0.00 0.00 2.83
854 855 3.566322 TGGCAAACACAACACACCTATAC 59.434 43.478 0.00 0.00 0.00 1.47
855 856 3.821748 TGGCAAACACAACACACCTATA 58.178 40.909 0.00 0.00 0.00 1.31
856 857 2.660572 TGGCAAACACAACACACCTAT 58.339 42.857 0.00 0.00 0.00 2.57
915 950 3.709880 TTATCAGGGACGCGTGCCG 62.710 63.158 38.66 32.01 46.59 5.69
916 951 2.171725 GTTATCAGGGACGCGTGCC 61.172 63.158 38.99 38.99 41.91 5.01
917 952 0.101759 TAGTTATCAGGGACGCGTGC 59.898 55.000 23.63 23.63 0.00 5.34
918 953 2.795175 ATAGTTATCAGGGACGCGTG 57.205 50.000 20.70 1.02 0.00 5.34
930 965 5.011431 GGTTGGGAAGCGTAGGTATAGTTAT 59.989 44.000 0.00 0.00 37.06 1.89
933 968 2.697229 GGTTGGGAAGCGTAGGTATAGT 59.303 50.000 0.00 0.00 37.06 2.12
935 970 2.749600 TGGTTGGGAAGCGTAGGTATA 58.250 47.619 0.00 0.00 37.06 1.47
940 975 2.280628 GAAGATGGTTGGGAAGCGTAG 58.719 52.381 0.00 0.00 0.00 3.51
964 999 4.090057 GCAAACGGCAGGTCGCTC 62.090 66.667 0.00 0.00 43.97 5.03
1537 1590 1.006043 AGGACCACGAGGAAGATCTCA 59.994 52.381 5.68 0.00 38.69 3.27
1826 1903 1.533338 CCAGGCTCACGTATACGACAC 60.533 57.143 30.77 16.02 43.02 3.67
1827 1904 0.736636 CCAGGCTCACGTATACGACA 59.263 55.000 30.77 15.20 43.02 4.35
2243 2320 3.402681 CGGACACCATGGCCTCCT 61.403 66.667 20.95 0.00 45.79 3.69
2369 2446 1.739562 CCAGACTTGACGCTGAGCC 60.740 63.158 0.00 0.00 34.06 4.70
2662 2743 2.885894 GGGTCCGTCCAAATTACAAACA 59.114 45.455 0.00 0.00 38.11 2.83
2825 3846 4.764050 TCTAGTTGTTTCCACTGGAACA 57.236 40.909 10.25 9.06 41.87 3.18
2826 3847 6.263344 GTTTTCTAGTTGTTTCCACTGGAAC 58.737 40.000 10.25 6.71 41.87 3.62
2827 3848 5.358725 GGTTTTCTAGTTGTTTCCACTGGAA 59.641 40.000 6.39 6.39 40.27 3.53
2828 3849 4.885325 GGTTTTCTAGTTGTTTCCACTGGA 59.115 41.667 0.00 0.00 0.00 3.86
2829 3850 4.887655 AGGTTTTCTAGTTGTTTCCACTGG 59.112 41.667 0.00 0.00 0.00 4.00
2830 3851 6.451064 AAGGTTTTCTAGTTGTTTCCACTG 57.549 37.500 0.00 0.00 0.00 3.66
2831 3852 7.778382 ACATAAGGTTTTCTAGTTGTTTCCACT 59.222 33.333 0.00 0.00 0.00 4.00
2840 3861 9.388506 CATCATGAGACATAAGGTTTTCTAGTT 57.611 33.333 0.09 0.00 0.00 2.24
2861 3882 9.798994 GATTTTATTGACTCAAAAGAGCATCAT 57.201 29.630 0.00 0.00 37.82 2.45
3000 4021 7.624661 TGTACGAACGACTAGATATGTACAAG 58.375 38.462 0.00 0.00 38.27 3.16
3227 4250 4.809426 CCGTAGTAAGCCATCGAAGAAATT 59.191 41.667 0.00 0.00 43.58 1.82
3235 4258 1.065273 ACGCCGTAGTAAGCCATCG 59.935 57.895 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.