Multiple sequence alignment - TraesCS2B01G484200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G484200 chr2B 100.000 3350 0 0 1 3350 681538113 681541462 0.000000e+00 6187.0
1 TraesCS2B01G484200 chr2A 92.321 3373 161 41 1 3326 708183711 708187032 0.000000e+00 4704.0
2 TraesCS2B01G484200 chr2A 100.000 35 0 0 3316 3350 708187312 708187346 7.760000e-07 65.8
3 TraesCS2B01G484200 chr2A 96.970 33 1 0 3066 3098 708186856 708186888 4.670000e-04 56.5
4 TraesCS2B01G484200 chr2D 91.444 3413 135 63 1 3350 568939203 568942521 0.000000e+00 4540.0
5 TraesCS2B01G484200 chr4A 90.612 245 12 4 498 740 10026182 10025947 6.980000e-82 315.0
6 TraesCS2B01G484200 chr4A 90.535 243 14 3 498 740 352466066 352466299 2.510000e-81 313.0
7 TraesCS2B01G484200 chr4A 96.970 33 1 0 1868 1900 740940556 740940588 4.670000e-04 56.5
8 TraesCS2B01G484200 chr5A 90.535 243 14 3 498 740 131829768 131830001 2.510000e-81 313.0
9 TraesCS2B01G484200 chr1B 90.535 243 14 3 498 740 615956003 615956236 2.510000e-81 313.0
10 TraesCS2B01G484200 chr1B 89.300 243 16 4 498 740 22742944 22743176 2.530000e-76 296.0
11 TraesCS2B01G484200 chrUn 90.123 243 15 3 498 740 50158744 50158977 1.170000e-79 307.0
12 TraesCS2B01G484200 chr6B 90.123 243 15 3 498 740 23538818 23539051 1.170000e-79 307.0
13 TraesCS2B01G484200 chr6A 90.123 243 15 3 498 740 558112423 558112190 1.170000e-79 307.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G484200 chr2B 681538113 681541462 3349 False 6187.000000 6187 100.000000 1 3350 1 chr2B.!!$F1 3349
1 TraesCS2B01G484200 chr2A 708183711 708187346 3635 False 1608.766667 4704 96.430333 1 3350 3 chr2A.!!$F1 3349
2 TraesCS2B01G484200 chr2D 568939203 568942521 3318 False 4540.000000 4540 91.444000 1 3350 1 chr2D.!!$F1 3349

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 850 0.456312 GAACTCTGTACCGGTCGCTG 60.456 60.0 12.4 10.05 0.0 5.18 F
1173 1199 0.110486 GGGAGCCAAGGAAACACTCA 59.890 55.0 0.0 0.00 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 1966 0.608308 TGTCCTGGTGTCGAGATCGT 60.608 55.0 1.7 0.0 40.8 3.73 R
3066 3136 0.107654 AAGCTGGGGAGATTGTACGC 60.108 55.0 0.0 0.0 0.0 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.417069 TGAGTGACATTGTACCCAAGG 57.583 47.619 0.00 0.00 38.30 3.61
115 116 5.249393 ACCTTTCCTGTTAGTGATGTGAGAT 59.751 40.000 0.00 0.00 0.00 2.75
124 125 2.567169 AGTGATGTGAGATGGTTCCGAA 59.433 45.455 0.00 0.00 0.00 4.30
165 166 2.422597 ACATCGTTTTCATGGCTCGAA 58.577 42.857 0.00 0.00 34.38 3.71
197 198 1.589803 GTGTGCTCCGTTTTACTGGT 58.410 50.000 0.00 0.00 0.00 4.00
328 333 4.083802 GCTAAGAATCAGTTTGCGTGTTCT 60.084 41.667 0.00 0.00 0.00 3.01
379 384 6.088085 CGTTAATTTTGGACTGTTTCTCATGC 59.912 38.462 0.00 0.00 0.00 4.06
402 408 4.827835 CCTTGGATCTAGAACTGACGGATA 59.172 45.833 0.00 0.00 0.00 2.59
409 415 6.737720 TCTAGAACTGACGGATAGTAGGTA 57.262 41.667 0.00 0.00 0.00 3.08
437 443 2.802057 GCTACCAGGTTGTATGCTACGG 60.802 54.545 0.00 0.00 0.00 4.02
467 473 3.631145 TGTGCAGCTTGTTGAGATTTC 57.369 42.857 0.00 0.00 0.00 2.17
619 625 0.953471 TTTGGTCGATTGGCTGTCCG 60.953 55.000 0.00 0.00 34.14 4.79
682 688 4.836125 TGATGCAGTTTCTCACCTTTTC 57.164 40.909 0.00 0.00 0.00 2.29
695 701 1.537202 ACCTTTTCGCTGCTGATGTTC 59.463 47.619 0.00 0.00 0.00 3.18
730 736 7.119846 GCTTGATTCTGGATACTGTTAAGTTGT 59.880 37.037 0.00 0.00 37.88 3.32
779 805 4.580167 TGCAAATAGTCAGCAACAAGAGTT 59.420 37.500 0.00 0.00 38.88 3.01
820 846 2.806608 TGTTGAACTCTGTACCGGTC 57.193 50.000 12.40 3.29 0.00 4.79
824 850 0.456312 GAACTCTGTACCGGTCGCTG 60.456 60.000 12.40 10.05 0.00 5.18
838 864 2.928116 GGTCGCTGTGGTGAAAGTATAC 59.072 50.000 0.00 0.00 33.47 1.47
902 928 6.853720 TGAAACGTTTCAAATAACCTTGTGA 58.146 32.000 34.99 11.75 43.62 3.58
1128 1154 2.271944 ACGCCTTGGCTTACTTTCTT 57.728 45.000 10.12 0.00 0.00 2.52
1129 1155 2.152016 ACGCCTTGGCTTACTTTCTTC 58.848 47.619 10.12 0.00 0.00 2.87
1168 1194 1.377333 CCGAGGGAGCCAAGGAAAC 60.377 63.158 0.00 0.00 0.00 2.78
1169 1195 1.374947 CGAGGGAGCCAAGGAAACA 59.625 57.895 0.00 0.00 0.00 2.83
1173 1199 0.110486 GGGAGCCAAGGAAACACTCA 59.890 55.000 0.00 0.00 0.00 3.41
1184 1210 2.880890 GGAAACACTCAGCTGTGAATGT 59.119 45.455 21.96 13.50 44.97 2.71
1206 1232 1.334869 CAACTTGTTCCCTGCTGTGAC 59.665 52.381 0.00 0.00 0.00 3.67
1575 1601 0.390866 ATGACTGCTTCTCCTGTGCG 60.391 55.000 0.00 0.00 0.00 5.34
1787 1813 3.810812 GCAGGTGCTGAGATCTGC 58.189 61.111 0.00 0.00 44.34 4.26
1905 1931 2.125673 GTCATCGGGGGTGTGACG 60.126 66.667 0.00 0.00 33.73 4.35
1940 1966 4.935578 TCTCTGACTTGTGGAGAGGAATA 58.064 43.478 0.00 0.00 35.02 1.75
1977 2003 4.407296 AGGACATGGAGAAGAATACAGGAC 59.593 45.833 0.00 0.00 0.00 3.85
2247 2273 3.136123 CTGCATTCCTGGTGCCCG 61.136 66.667 6.81 0.00 41.83 6.13
2339 2365 5.404366 TCTTCGTCTACAACTGTGCAATAAC 59.596 40.000 0.00 0.00 0.00 1.89
2576 2602 9.621629 TTAACACTCTTCATTCAAAAGTCCTTA 57.378 29.630 0.00 0.00 0.00 2.69
2590 2616 9.621629 TCAAAAGTCCTTAATTCTTGTTGTCTA 57.378 29.630 0.00 0.00 0.00 2.59
2599 2625 9.713740 CTTAATTCTTGTTGTCTAGCATGAATC 57.286 33.333 0.00 0.00 39.36 2.52
2640 2666 5.072055 TCTTTGTTCATCATCCTTGCTGAA 58.928 37.500 0.00 0.00 36.04 3.02
2669 2695 1.153168 TTATTCTGCTGGGCCGAGC 60.153 57.895 30.96 30.96 39.62 5.03
2702 2728 7.590322 GCATCTTTCAGTTGCATATATTGTCTG 59.410 37.037 0.00 0.00 39.91 3.51
2704 2730 9.836864 ATCTTTCAGTTGCATATATTGTCTGTA 57.163 29.630 0.00 0.00 0.00 2.74
2733 2759 8.126074 CCATACGTATAGATCAGTAGATTCTGC 58.874 40.741 7.96 0.00 33.72 4.26
2762 2810 8.123639 ACTAAAGAGTATGTGTGTGTGTATCT 57.876 34.615 0.00 0.00 32.65 1.98
2769 2817 8.479313 AGTATGTGTGTGTGTATCTATTGTTG 57.521 34.615 0.00 0.00 0.00 3.33
2787 2835 3.318275 TGTTGAGAGTCGAGCAGTAAACT 59.682 43.478 0.00 0.00 0.00 2.66
2788 2836 4.202121 TGTTGAGAGTCGAGCAGTAAACTT 60.202 41.667 0.00 0.00 0.00 2.66
2829 2877 0.877213 GCAAAGTGTCGGTGGTACGT 60.877 55.000 0.00 0.00 34.94 3.57
2841 2889 0.974010 TGGTACGTAGGCTCAAGGGG 60.974 60.000 0.00 0.00 0.00 4.79
2868 2921 5.825151 GGAAGGGACCAAATCAATTAGAGAG 59.175 44.000 0.00 0.00 0.00 3.20
2871 2924 6.418946 AGGGACCAAATCAATTAGAGAGAAC 58.581 40.000 0.00 0.00 0.00 3.01
2872 2925 5.294552 GGGACCAAATCAATTAGAGAGAACG 59.705 44.000 0.00 0.00 0.00 3.95
2873 2926 5.294552 GGACCAAATCAATTAGAGAGAACGG 59.705 44.000 0.00 0.00 0.00 4.44
2874 2927 5.186198 ACCAAATCAATTAGAGAGAACGGG 58.814 41.667 0.00 0.00 0.00 5.28
2875 2928 5.045869 ACCAAATCAATTAGAGAGAACGGGA 60.046 40.000 0.00 0.00 0.00 5.14
2876 2929 5.294552 CCAAATCAATTAGAGAGAACGGGAC 59.705 44.000 0.00 0.00 0.00 4.46
2908 2971 2.689553 TTGTAATCGCCAGATGCTCA 57.310 45.000 0.00 0.00 37.14 4.26
2960 3025 1.900498 GCCCTGCTGCTGTGTTTCT 60.900 57.895 0.00 0.00 0.00 2.52
2981 3047 2.510691 CGCCGTACCGCCAATTCT 60.511 61.111 0.43 0.00 0.00 2.40
2989 3055 1.270907 ACCGCCAATTCTCTCTCAGT 58.729 50.000 0.00 0.00 0.00 3.41
2993 3059 2.794282 CGCCAATTCTCTCTCAGTCTCG 60.794 54.545 0.00 0.00 0.00 4.04
2994 3060 2.481104 GCCAATTCTCTCTCAGTCTCGG 60.481 54.545 0.00 0.00 0.00 4.63
3047 3117 2.759973 TGGTGGTGGCGGCAAAAA 60.760 55.556 15.50 0.00 0.00 1.94
3049 3119 2.028925 GTGGTGGCGGCAAAAAGG 59.971 61.111 15.50 0.00 0.00 3.11
3050 3120 3.922640 TGGTGGCGGCAAAAAGGC 61.923 61.111 15.50 0.00 39.93 4.35
3051 3121 3.615709 GGTGGCGGCAAAAAGGCT 61.616 61.111 15.50 0.00 41.46 4.58
3052 3122 2.356194 GTGGCGGCAAAAAGGCTG 60.356 61.111 15.50 0.00 43.14 4.85
3056 3126 4.173971 CGGCAAAAAGGCTGCATC 57.826 55.556 0.50 0.00 41.78 3.91
3057 3127 1.802715 CGGCAAAAAGGCTGCATCG 60.803 57.895 0.50 0.00 41.78 3.84
3058 3128 2.096442 GGCAAAAAGGCTGCATCGC 61.096 57.895 0.50 0.00 41.78 4.58
3060 3130 1.081242 CAAAAAGGCTGCATCGCGT 60.081 52.632 5.77 0.00 0.00 6.01
3061 3131 0.167908 CAAAAAGGCTGCATCGCGTA 59.832 50.000 5.77 0.00 0.00 4.42
3062 3132 0.168128 AAAAAGGCTGCATCGCGTAC 59.832 50.000 5.77 0.00 0.00 3.67
3063 3133 0.673644 AAAAGGCTGCATCGCGTACT 60.674 50.000 5.77 0.00 0.00 2.73
3064 3134 0.673644 AAAGGCTGCATCGCGTACTT 60.674 50.000 5.77 0.00 0.00 2.24
3066 3136 2.703409 GCTGCATCGCGTACTTGG 59.297 61.111 5.77 0.00 0.00 3.61
3067 3137 2.703409 CTGCATCGCGTACTTGGC 59.297 61.111 5.77 2.74 0.00 4.52
3079 3149 2.547826 GTACTTGGCGTACAATCTCCC 58.452 52.381 0.00 0.00 46.21 4.30
3080 3150 0.252197 ACTTGGCGTACAATCTCCCC 59.748 55.000 0.00 0.00 38.65 4.81
3081 3151 0.251916 CTTGGCGTACAATCTCCCCA 59.748 55.000 0.00 0.00 38.65 4.96
3082 3152 0.251916 TTGGCGTACAATCTCCCCAG 59.748 55.000 0.00 0.00 33.18 4.45
3083 3153 1.523938 GGCGTACAATCTCCCCAGC 60.524 63.158 0.00 0.00 0.00 4.85
3084 3154 1.522569 GCGTACAATCTCCCCAGCT 59.477 57.895 0.00 0.00 0.00 4.24
3085 3155 0.107654 GCGTACAATCTCCCCAGCTT 60.108 55.000 0.00 0.00 0.00 3.74
3086 3156 1.941325 CGTACAATCTCCCCAGCTTC 58.059 55.000 0.00 0.00 0.00 3.86
3087 3157 1.473434 CGTACAATCTCCCCAGCTTCC 60.473 57.143 0.00 0.00 0.00 3.46
3088 3158 1.840635 GTACAATCTCCCCAGCTTCCT 59.159 52.381 0.00 0.00 0.00 3.36
3089 3159 0.915364 ACAATCTCCCCAGCTTCCTC 59.085 55.000 0.00 0.00 0.00 3.71
3090 3160 0.179062 CAATCTCCCCAGCTTCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
3091 3161 1.977293 AATCTCCCCAGCTTCCTCGC 61.977 60.000 0.00 0.00 0.00 5.03
3092 3162 4.521062 CTCCCCAGCTTCCTCGCG 62.521 72.222 0.00 0.00 34.40 5.87
3128 3209 4.079269 TGAGAATCCTGGGGAAAATATGCA 60.079 41.667 0.00 0.00 34.34 3.96
3166 3247 0.622665 ACAATCTCCCCAGCTTCCTG 59.377 55.000 0.00 0.00 38.85 3.86
3182 3263 1.214589 CTGGCGTACTTGGCGTACT 59.785 57.895 0.00 0.00 45.05 2.73
3218 3299 0.038618 GGCCGGGTTTCATTTGTCAC 60.039 55.000 2.18 0.00 0.00 3.67
3245 3327 1.075151 TTTGACCCGGGGCCTTTTT 60.075 52.632 27.91 0.00 0.00 1.94
3304 3386 3.127548 GCCTCGCTTTTGATGATTCTTCA 59.872 43.478 0.00 0.00 36.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.356190 CGTCAGACAAAACGGAATTTAAGTTC 59.644 38.462 0.41 2.22 35.32 3.01
115 116 1.069513 ACATTCTGTCGTTCGGAACCA 59.930 47.619 14.83 7.37 43.18 3.67
124 125 4.636648 TGTAAAAACCACACATTCTGTCGT 59.363 37.500 0.00 0.00 0.00 4.34
143 144 3.591023 TCGAGCCATGAAAACGATGTAA 58.409 40.909 0.00 0.00 0.00 2.41
197 198 1.240641 ACCGCAAACCAATCGATGCA 61.241 50.000 0.00 0.00 38.69 3.96
287 289 0.179189 GCTTCGCCGAAAGAACATGG 60.179 55.000 0.00 0.00 0.00 3.66
328 333 7.065324 GGTCCGATTTTACAACAGATTCACATA 59.935 37.037 0.00 0.00 0.00 2.29
379 384 3.024547 TCCGTCAGTTCTAGATCCAAGG 58.975 50.000 0.00 0.00 0.00 3.61
402 408 5.464984 ACCTGGTAGCACATTATACCTACT 58.535 41.667 0.00 0.00 41.74 2.57
409 415 4.821805 GCATACAACCTGGTAGCACATTAT 59.178 41.667 0.00 0.00 0.00 1.28
437 443 1.190763 CAAGCTGCACAACAAAATCGC 59.809 47.619 1.02 0.00 0.00 4.58
467 473 4.662145 GAAGACAAAGGCCACGAAATATG 58.338 43.478 5.01 0.00 0.00 1.78
643 649 3.940209 TCAATCAACAAGACAATGGCC 57.060 42.857 0.00 0.00 0.00 5.36
695 701 3.415212 TCCAGAATCAAGCAAGGAACTG 58.585 45.455 0.00 0.00 40.86 3.16
739 745 9.378551 ACTATTTGCACAGAAAATACTTCGATA 57.621 29.630 0.00 0.00 0.00 2.92
742 748 7.518161 TGACTATTTGCACAGAAAATACTTCG 58.482 34.615 0.00 0.00 0.00 3.79
743 749 7.483059 GCTGACTATTTGCACAGAAAATACTTC 59.517 37.037 4.08 0.00 32.90 3.01
746 772 6.611381 TGCTGACTATTTGCACAGAAAATAC 58.389 36.000 4.08 0.00 32.90 1.89
779 805 6.873997 ACATCAGATTCATACAGGAACGTTA 58.126 36.000 0.00 0.00 0.00 3.18
820 846 6.257849 ACAATATGTATACTTTCACCACAGCG 59.742 38.462 4.17 0.00 0.00 5.18
824 850 7.495934 AGCAGACAATATGTATACTTTCACCAC 59.504 37.037 4.17 0.00 0.00 4.16
838 864 9.033481 TCAAAAAGAAAAACAGCAGACAATATG 57.967 29.630 0.00 0.00 0.00 1.78
1128 1154 3.769844 GGAAGTACTCATTCCTGACCAGA 59.230 47.826 5.02 0.00 42.52 3.86
1129 1155 3.118592 GGGAAGTACTCATTCCTGACCAG 60.119 52.174 11.10 0.00 44.75 4.00
1168 1194 1.232119 TGCACATTCACAGCTGAGTG 58.768 50.000 23.35 19.27 39.48 3.51
1169 1195 1.605710 GTTGCACATTCACAGCTGAGT 59.394 47.619 23.35 7.66 0.00 3.41
1173 1199 2.026641 ACAAGTTGCACATTCACAGCT 58.973 42.857 1.81 0.00 0.00 4.24
1184 1210 0.395586 ACAGCAGGGAACAAGTTGCA 60.396 50.000 1.81 0.00 38.97 4.08
1206 1232 4.701651 TCATTACTGCCCAAATCTGAACTG 59.298 41.667 0.00 0.00 0.00 3.16
1410 1436 5.367945 ACAGATATCCACCGTTAACCAAT 57.632 39.130 0.00 0.00 0.00 3.16
1575 1601 1.202698 ACAGCAAGTGACTCCTTGTCC 60.203 52.381 0.00 0.00 44.75 4.02
1787 1813 2.544685 CCTCTGAATTGTACAGCTCCG 58.455 52.381 0.00 0.00 35.61 4.63
1940 1966 0.608308 TGTCCTGGTGTCGAGATCGT 60.608 55.000 1.70 0.00 40.80 3.73
1974 2000 0.979187 TTCCTCCGGGGTACATGTCC 60.979 60.000 0.00 3.51 36.25 4.02
1977 2003 1.268992 TGGTTCCTCCGGGGTACATG 61.269 60.000 16.62 0.00 37.15 3.21
2247 2273 3.202706 GCGCCGTTCCCATCTTCC 61.203 66.667 0.00 0.00 0.00 3.46
2275 2301 2.680352 GAGCACCTCCCAGTCGGA 60.680 66.667 0.00 0.00 38.83 4.55
2380 2406 3.100671 TGGGTTTTGCTAAACAAGTGGT 58.899 40.909 22.19 0.00 44.37 4.16
2576 2602 7.934855 AGATTCATGCTAGACAACAAGAATT 57.065 32.000 0.00 0.00 0.00 2.17
2640 2666 3.498397 CCAGCAGAATAACAAGTGTTCGT 59.502 43.478 0.00 0.00 39.31 3.85
2641 2667 3.120199 CCCAGCAGAATAACAAGTGTTCG 60.120 47.826 0.00 0.00 39.31 3.95
2669 2695 3.043635 CAACTGAAAGATGCGATTCGG 57.956 47.619 8.34 0.00 37.43 4.30
2702 2728 9.781633 ATCTACTGATCTATACGTATGGGATAC 57.218 37.037 18.37 13.61 0.00 2.24
2704 2730 9.344772 GAATCTACTGATCTATACGTATGGGAT 57.655 37.037 18.37 18.74 31.51 3.85
2762 2810 5.638596 TTACTGCTCGACTCTCAACAATA 57.361 39.130 0.00 0.00 0.00 1.90
2764 2812 4.049186 GTTTACTGCTCGACTCTCAACAA 58.951 43.478 0.00 0.00 0.00 2.83
2769 2817 5.908916 AAAAAGTTTACTGCTCGACTCTC 57.091 39.130 0.00 0.00 0.00 3.20
2829 2877 0.326618 CTTCCCTCCCCTTGAGCCTA 60.327 60.000 0.00 0.00 39.98 3.93
2841 2889 2.899303 TTGATTTGGTCCCTTCCCTC 57.101 50.000 0.00 0.00 0.00 4.30
2868 2921 0.249955 TATTTGGTCCCGTCCCGTTC 59.750 55.000 0.00 0.00 0.00 3.95
2871 2924 1.673920 CAATTATTTGGTCCCGTCCCG 59.326 52.381 0.00 0.00 0.00 5.14
2872 2925 2.730382 ACAATTATTTGGTCCCGTCCC 58.270 47.619 2.66 0.00 37.15 4.46
2873 2926 5.277634 CGATTACAATTATTTGGTCCCGTCC 60.278 44.000 2.66 0.00 37.15 4.79
2874 2927 5.744490 CGATTACAATTATTTGGTCCCGTC 58.256 41.667 2.66 0.00 37.15 4.79
2875 2928 4.035909 GCGATTACAATTATTTGGTCCCGT 59.964 41.667 2.66 0.00 37.15 5.28
2876 2929 4.533222 GCGATTACAATTATTTGGTCCCG 58.467 43.478 2.66 0.00 37.15 5.14
2908 2971 2.519302 GGCAGGGCACAACAGTGT 60.519 61.111 0.00 0.00 39.07 3.55
2981 3047 3.691575 AGAAATGTCCGAGACTGAGAGA 58.308 45.455 5.77 0.00 33.15 3.10
2989 3055 1.346365 CGCGAAAGAAATGTCCGAGA 58.654 50.000 0.00 0.00 0.00 4.04
2993 3059 2.070783 TGTACCGCGAAAGAAATGTCC 58.929 47.619 8.23 0.00 0.00 4.02
2994 3060 2.474032 GCTGTACCGCGAAAGAAATGTC 60.474 50.000 8.23 0.00 0.00 3.06
3047 3117 1.811266 CAAGTACGCGATGCAGCCT 60.811 57.895 15.93 0.00 0.00 4.58
3049 3119 2.703409 CCAAGTACGCGATGCAGC 59.297 61.111 15.93 0.00 0.00 5.25
3050 3120 2.703409 GCCAAGTACGCGATGCAG 59.297 61.111 15.93 0.00 0.00 4.41
3060 3130 1.483415 GGGGAGATTGTACGCCAAGTA 59.517 52.381 0.00 0.00 36.25 2.24
3061 3131 0.252197 GGGGAGATTGTACGCCAAGT 59.748 55.000 0.00 0.00 36.25 3.16
3062 3132 0.251916 TGGGGAGATTGTACGCCAAG 59.748 55.000 0.00 0.00 44.01 3.61
3063 3133 0.251916 CTGGGGAGATTGTACGCCAA 59.748 55.000 0.00 0.00 45.66 4.52
3064 3134 1.904771 CTGGGGAGATTGTACGCCA 59.095 57.895 0.00 0.00 44.58 5.69
3066 3136 0.107654 AAGCTGGGGAGATTGTACGC 60.108 55.000 0.00 0.00 0.00 4.42
3067 3137 1.473434 GGAAGCTGGGGAGATTGTACG 60.473 57.143 0.00 0.00 0.00 3.67
3068 3138 1.840635 AGGAAGCTGGGGAGATTGTAC 59.159 52.381 0.00 0.00 0.00 2.90
3069 3139 2.119495 GAGGAAGCTGGGGAGATTGTA 58.881 52.381 0.00 0.00 0.00 2.41
3070 3140 0.915364 GAGGAAGCTGGGGAGATTGT 59.085 55.000 0.00 0.00 0.00 2.71
3072 3142 1.977293 GCGAGGAAGCTGGGGAGATT 61.977 60.000 0.00 0.00 0.00 2.40
3075 3145 4.521062 CGCGAGGAAGCTGGGGAG 62.521 72.222 0.00 0.00 34.40 4.30
3076 3146 3.949885 TACGCGAGGAAGCTGGGGA 62.950 63.158 15.93 0.00 34.40 4.81
3077 3147 3.458163 TACGCGAGGAAGCTGGGG 61.458 66.667 15.93 0.00 34.40 4.96
3079 3149 0.389948 AAAGTACGCGAGGAAGCTGG 60.390 55.000 15.93 0.00 34.40 4.85
3080 3150 0.992802 GAAAGTACGCGAGGAAGCTG 59.007 55.000 15.93 0.00 34.40 4.24
3081 3151 0.889306 AGAAAGTACGCGAGGAAGCT 59.111 50.000 15.93 0.00 34.40 3.74
3082 3152 0.992802 CAGAAAGTACGCGAGGAAGC 59.007 55.000 15.93 0.00 0.00 3.86
3083 3153 2.520979 CTCAGAAAGTACGCGAGGAAG 58.479 52.381 15.93 0.00 0.00 3.46
3084 3154 1.201647 CCTCAGAAAGTACGCGAGGAA 59.798 52.381 15.93 0.00 45.08 3.36
3085 3155 0.809385 CCTCAGAAAGTACGCGAGGA 59.191 55.000 15.93 0.00 45.08 3.71
3086 3156 3.330766 CCTCAGAAAGTACGCGAGG 57.669 57.895 15.93 0.62 37.52 4.63
3087 3157 1.199327 TCACCTCAGAAAGTACGCGAG 59.801 52.381 15.93 0.00 0.00 5.03
3088 3158 1.199327 CTCACCTCAGAAAGTACGCGA 59.801 52.381 15.93 0.00 0.00 5.87
3089 3159 1.199327 TCTCACCTCAGAAAGTACGCG 59.801 52.381 3.53 3.53 0.00 6.01
3090 3160 3.299340 TTCTCACCTCAGAAAGTACGC 57.701 47.619 0.00 0.00 29.01 4.42
3091 3161 4.158764 AGGATTCTCACCTCAGAAAGTACG 59.841 45.833 0.00 0.00 35.99 3.67
3092 3162 5.415221 CAGGATTCTCACCTCAGAAAGTAC 58.585 45.833 0.00 0.00 35.99 2.73
3093 3163 4.467795 CCAGGATTCTCACCTCAGAAAGTA 59.532 45.833 0.00 0.00 35.99 2.24
3128 3209 0.992431 TACTCCCTCCTCCTACCGCT 60.992 60.000 0.00 0.00 0.00 5.52
3218 3299 1.512156 CCCGGGTCAAACTGTTTCGG 61.512 60.000 14.18 18.72 36.23 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.