Multiple sequence alignment - TraesCS2B01G483300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G483300 chr2B 100.000 3247 0 0 1 3247 680596746 680599992 0.000000e+00 5997.0
1 TraesCS2B01G483300 chr2D 88.984 3023 186 64 1 2950 568090236 568093184 0.000000e+00 3602.0
2 TraesCS2B01G483300 chr2D 88.672 1995 138 38 1 1964 568104998 568106935 0.000000e+00 2351.0
3 TraesCS2B01G483300 chr2A 89.786 2751 135 55 274 2946 707567096 707569778 0.000000e+00 3389.0
4 TraesCS2B01G483300 chr2A 88.235 204 24 0 2951 3154 1674178 1673975 9.000000e-61 244.0
5 TraesCS2B01G483300 chr2A 82.593 270 27 8 6 273 707565062 707565313 1.520000e-53 220.0
6 TraesCS2B01G483300 chrUn 83.688 423 50 8 984 1396 477382456 477382043 6.570000e-102 381.0
7 TraesCS2B01G483300 chrUn 88.202 178 20 1 2951 3128 402900307 402900131 9.130000e-51 211.0
8 TraesCS2B01G483300 chrUn 88.202 178 20 1 2951 3128 471956474 471956298 9.130000e-51 211.0
9 TraesCS2B01G483300 chr5B 88.725 204 22 1 2951 3154 688930299 688930501 6.960000e-62 248.0
10 TraesCS2B01G483300 chr4A 88.557 201 22 1 2952 3152 668707452 668707253 3.240000e-60 243.0
11 TraesCS2B01G483300 chr4A 87.562 201 24 1 2952 3152 668949328 668949129 7.010000e-57 231.0
12 TraesCS2B01G483300 chr7D 91.667 144 11 1 3011 3154 511340810 511340668 7.110000e-47 198.0
13 TraesCS2B01G483300 chr7D 80.921 152 28 1 2947 3098 408366122 408366272 5.690000e-23 119.0
14 TraesCS2B01G483300 chr7D 100.000 56 0 0 3192 3247 511340558 511340503 1.590000e-18 104.0
15 TraesCS2B01G483300 chr3D 80.921 152 22 4 2950 3098 485233643 485233790 2.650000e-21 113.0
16 TraesCS2B01G483300 chr5A 98.214 56 1 0 3192 3247 496533258 496533203 7.410000e-17 99.0
17 TraesCS2B01G483300 chr5A 91.071 56 2 1 3192 3247 23179670 23179722 4.490000e-09 73.1
18 TraesCS2B01G483300 chr1D 98.214 56 1 0 3192 3247 483427540 483427485 7.410000e-17 99.0
19 TraesCS2B01G483300 chr1D 100.000 43 0 0 3205 3247 271302055 271302013 2.690000e-11 80.5
20 TraesCS2B01G483300 chr6B 96.429 56 2 0 3192 3247 248394931 248394876 3.450000e-15 93.5
21 TraesCS2B01G483300 chr4B 95.349 43 2 0 3205 3247 58056047 58056005 5.810000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G483300 chr2B 680596746 680599992 3246 False 5997.0 5997 100.0000 1 3247 1 chr2B.!!$F1 3246
1 TraesCS2B01G483300 chr2D 568090236 568093184 2948 False 3602.0 3602 88.9840 1 2950 1 chr2D.!!$F1 2949
2 TraesCS2B01G483300 chr2D 568104998 568106935 1937 False 2351.0 2351 88.6720 1 1964 1 chr2D.!!$F2 1963
3 TraesCS2B01G483300 chr2A 707565062 707569778 4716 False 1804.5 3389 86.1895 6 2946 2 chr2A.!!$F1 2940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 2444 0.521291 CCATAAATACCATGCCGGCG 59.479 55.0 23.9 10.49 39.03 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2411 4321 0.178909 AGGATGCCGGAGATGAGGAT 60.179 55.0 5.05 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 9.559732 CCATTGATCAATCACATTACCTAGTTA 57.440 33.333 18.16 0.00 36.36 2.24
332 2125 3.740397 GCACAAGCTGGCGATGCA 61.740 61.111 11.66 0.00 37.91 3.96
433 2226 4.108299 CCACATGGGCGCCCTACA 62.108 66.667 43.34 26.79 36.94 2.74
545 2339 5.626809 CGGTGGAAAAAGATGAGGAGATGTA 60.627 44.000 0.00 0.00 0.00 2.29
612 2406 3.065233 TGCCATGACGCAAAAGCTTATAG 59.935 43.478 0.00 0.00 35.32 1.31
650 2444 0.521291 CCATAAATACCATGCCGGCG 59.479 55.000 23.90 10.49 39.03 6.46
651 2445 1.518325 CATAAATACCATGCCGGCGA 58.482 50.000 23.90 11.80 39.03 5.54
731 2525 3.044894 GGGTCTCTGAATCTCCATCCTT 58.955 50.000 0.00 0.00 0.00 3.36
738 2532 4.038522 TCTGAATCTCCATCCTTTCTAGCG 59.961 45.833 0.00 0.00 0.00 4.26
740 2534 4.893524 TGAATCTCCATCCTTTCTAGCGTA 59.106 41.667 0.00 0.00 0.00 4.42
781 2575 6.042093 AGTTTGGCACTGCTAGATATTAGCTA 59.958 38.462 14.13 0.00 40.95 3.32
782 2576 5.651387 TGGCACTGCTAGATATTAGCTAG 57.349 43.478 10.92 10.92 40.95 3.42
808 2602 2.246719 AGCATCGGTTCATAAGGAGC 57.753 50.000 0.00 0.00 0.00 4.70
813 2607 1.207089 TCGGTTCATAAGGAGCTGTGG 59.793 52.381 0.00 0.00 34.90 4.17
844 2643 1.153667 GCTCAGCAAGGAGACCTCG 60.154 63.158 0.00 0.00 37.05 4.63
856 2655 2.764572 GGAGACCTCGGATACCAAAGAA 59.235 50.000 0.00 0.00 0.00 2.52
857 2656 3.181474 GGAGACCTCGGATACCAAAGAAG 60.181 52.174 0.00 0.00 0.00 2.85
859 2658 4.094476 AGACCTCGGATACCAAAGAAGAA 58.906 43.478 0.00 0.00 0.00 2.52
860 2659 4.160626 AGACCTCGGATACCAAAGAAGAAG 59.839 45.833 0.00 0.00 0.00 2.85
861 2660 4.094476 ACCTCGGATACCAAAGAAGAAGA 58.906 43.478 0.00 0.00 0.00 2.87
862 2661 4.530946 ACCTCGGATACCAAAGAAGAAGAA 59.469 41.667 0.00 0.00 0.00 2.52
863 2662 5.112686 CCTCGGATACCAAAGAAGAAGAAG 58.887 45.833 0.00 0.00 0.00 2.85
864 2663 5.105310 CCTCGGATACCAAAGAAGAAGAAGA 60.105 44.000 0.00 0.00 0.00 2.87
865 2664 6.354794 TCGGATACCAAAGAAGAAGAAGAA 57.645 37.500 0.00 0.00 0.00 2.52
886 2685 4.851639 AGAAGAAGAAGGTATGCATGGT 57.148 40.909 10.16 0.00 0.00 3.55
895 2694 4.443978 AGGTATGCATGGTTAGCTGAAT 57.556 40.909 10.16 0.00 0.00 2.57
943 2752 3.740590 TCGTTCGTAGATCTTGTTCGAC 58.259 45.455 0.00 0.00 35.04 4.20
997 2806 4.180057 GTGAAGAAGCTCATCAAGATCGT 58.820 43.478 0.00 0.00 0.00 3.73
1056 2865 1.269517 CCTACTCGCAGAAGCAGATCC 60.270 57.143 0.00 0.00 42.27 3.36
1071 2880 0.377203 GATCCGCCGATTTCCACAAC 59.623 55.000 0.00 0.00 0.00 3.32
1086 2895 4.349365 TCCACAACTTTTCAGAAAGGGTT 58.651 39.130 9.65 9.44 45.24 4.11
1090 2899 4.159693 ACAACTTTTCAGAAAGGGTTGGTC 59.840 41.667 28.15 0.00 45.24 4.02
1094 2903 2.721425 TCAGAAAGGGTTGGTCGTTT 57.279 45.000 0.00 0.00 0.00 3.60
1096 2905 2.685897 TCAGAAAGGGTTGGTCGTTTTG 59.314 45.455 0.00 0.00 0.00 2.44
1102 2911 1.335872 GGGTTGGTCGTTTTGATGCAG 60.336 52.381 0.00 0.00 0.00 4.41
1114 2923 0.673437 TGATGCAGGCATATCGACGA 59.327 50.000 6.76 0.00 36.70 4.20
1138 2949 4.794439 TCGTCACAGCCGATGCCG 62.794 66.667 0.00 0.00 38.69 5.69
1140 2951 2.742372 GTCACAGCCGATGCCGTT 60.742 61.111 0.00 0.00 38.69 4.44
1141 2952 1.447140 GTCACAGCCGATGCCGTTA 60.447 57.895 0.00 0.00 38.69 3.18
1155 2966 6.523201 CCGATGCCGTTAATTAATTAGCATTC 59.477 38.462 23.55 17.90 34.12 2.67
1157 2968 6.701145 TGCCGTTAATTAATTAGCATTCCA 57.299 33.333 18.52 8.84 0.00 3.53
1161 2972 7.326063 GCCGTTAATTAATTAGCATTCCATGTC 59.674 37.037 18.52 0.00 0.00 3.06
1168 2979 1.293062 AGCATTCCATGTCCCTGAGT 58.707 50.000 0.00 0.00 0.00 3.41
1171 2982 3.266772 AGCATTCCATGTCCCTGAGTTTA 59.733 43.478 0.00 0.00 0.00 2.01
1178 2989 7.265599 TCCATGTCCCTGAGTTTAATTTCTA 57.734 36.000 0.00 0.00 0.00 2.10
1179 2990 7.110155 TCCATGTCCCTGAGTTTAATTTCTAC 58.890 38.462 0.00 0.00 0.00 2.59
1180 2991 6.318900 CCATGTCCCTGAGTTTAATTTCTACC 59.681 42.308 0.00 0.00 0.00 3.18
1183 2994 6.043938 TGTCCCTGAGTTTAATTTCTACCTGT 59.956 38.462 0.00 0.00 0.00 4.00
1185 2996 6.271391 TCCCTGAGTTTAATTTCTACCTGTGA 59.729 38.462 0.00 0.00 0.00 3.58
1187 2998 7.066284 CCCTGAGTTTAATTTCTACCTGTGATG 59.934 40.741 0.00 0.00 0.00 3.07
1188 2999 7.066284 CCTGAGTTTAATTTCTACCTGTGATGG 59.934 40.741 0.00 0.00 0.00 3.51
1195 3006 3.887621 TCTACCTGTGATGGTTGTAGC 57.112 47.619 0.00 0.00 41.22 3.58
1292 3109 1.684983 GAACATGCCCCATCTTGGATG 59.315 52.381 0.00 0.97 40.96 3.51
1303 3120 4.346418 CCCATCTTGGATGTTCTAGCTAGT 59.654 45.833 20.10 0.57 40.96 2.57
1304 3121 5.540337 CCCATCTTGGATGTTCTAGCTAGTA 59.460 44.000 20.10 8.39 40.96 1.82
1305 3122 6.295011 CCCATCTTGGATGTTCTAGCTAGTAG 60.295 46.154 20.10 0.00 40.96 2.57
1306 3123 6.266558 CCATCTTGGATGTTCTAGCTAGTAGT 59.733 42.308 20.10 5.64 40.96 2.73
1307 3124 7.448777 CCATCTTGGATGTTCTAGCTAGTAGTA 59.551 40.741 20.10 6.45 40.96 1.82
1309 3126 7.575505 TCTTGGATGTTCTAGCTAGTAGTAGT 58.424 38.462 20.10 3.61 0.00 2.73
1310 3127 8.712103 TCTTGGATGTTCTAGCTAGTAGTAGTA 58.288 37.037 20.10 0.00 0.00 1.82
1311 3128 8.674263 TTGGATGTTCTAGCTAGTAGTAGTAC 57.326 38.462 20.10 0.00 0.00 2.73
1342 3170 1.299773 CGAGCTCTTCGCCTGATCC 60.300 63.158 12.85 0.00 43.22 3.36
1351 3179 2.105128 GCCTGATCCGTGGTCTCG 59.895 66.667 0.00 0.00 0.00 4.04
1354 3182 0.458543 CCTGATCCGTGGTCTCGTTG 60.459 60.000 0.00 0.00 0.00 4.10
1355 3183 0.243907 CTGATCCGTGGTCTCGTTGT 59.756 55.000 0.00 0.00 0.00 3.32
1502 3336 7.791029 TCAGGTTCATTATGCATGTAGAGTTA 58.209 34.615 10.16 0.00 34.06 2.24
1575 3418 3.859386 GCTGGCCTGTCAAAATTAATTCG 59.141 43.478 11.69 0.00 0.00 3.34
1596 3444 4.041691 TCGGATCTTCTCCCAAAATATCCC 59.958 45.833 0.00 0.00 41.49 3.85
1597 3445 4.202461 CGGATCTTCTCCCAAAATATCCCA 60.202 45.833 0.00 0.00 41.49 4.37
1598 3446 5.320277 GGATCTTCTCCCAAAATATCCCAG 58.680 45.833 0.00 0.00 38.19 4.45
1599 3447 5.073691 GGATCTTCTCCCAAAATATCCCAGA 59.926 44.000 0.00 0.00 38.19 3.86
1600 3448 6.240409 GGATCTTCTCCCAAAATATCCCAGAT 60.240 42.308 0.00 0.00 38.19 2.90
1601 3449 6.192970 TCTTCTCCCAAAATATCCCAGATC 57.807 41.667 0.00 0.00 0.00 2.75
1613 3461 4.533919 ATCCCAGATCGATCTTCATGAC 57.466 45.455 25.25 0.00 34.22 3.06
1617 3465 3.563508 CAGATCGATCTTCATGACCGAG 58.436 50.000 25.25 6.44 34.22 4.63
1618 3466 2.030363 AGATCGATCTTCATGACCGAGC 60.030 50.000 22.32 13.06 36.12 5.03
1629 3477 2.045634 ACCGAGCTGCATGCATGT 60.046 55.556 26.79 11.55 45.94 3.21
1637 3487 4.297071 GCATGCATGTGCGCTAAG 57.703 55.556 26.79 0.00 45.83 2.18
1653 3510 8.175069 TGTGCGCTAAGTTAATTTTAATCTCAG 58.825 33.333 9.73 0.00 0.00 3.35
1663 3520 4.963276 TTTTAATCTCAGGACGCAATGG 57.037 40.909 0.00 0.00 0.00 3.16
1665 3522 4.422073 TTAATCTCAGGACGCAATGGAT 57.578 40.909 0.00 0.00 0.00 3.41
1699 3559 9.573166 AGTATAAATTAGGCATTATGCTTGTCA 57.427 29.630 17.13 0.00 44.28 3.58
1713 3573 3.827876 TGCTTGTCAATGGTCATGTCATT 59.172 39.130 9.92 9.92 35.45 2.57
1714 3574 4.281435 TGCTTGTCAATGGTCATGTCATTT 59.719 37.500 12.10 0.00 33.08 2.32
1715 3575 4.624024 GCTTGTCAATGGTCATGTCATTTG 59.376 41.667 12.10 6.19 33.08 2.32
1718 3578 4.583907 TGTCAATGGTCATGTCATTTGTGT 59.416 37.500 12.10 0.00 33.08 3.72
1755 3617 2.287896 ATGGGGAAGGGGATGGCA 60.288 61.111 0.00 0.00 0.00 4.92
1806 3668 0.037697 TGCACTACATCACCACGGAC 60.038 55.000 0.00 0.00 0.00 4.79
1950 3812 0.467384 CCGACCAGCCTCAGATCAAT 59.533 55.000 0.00 0.00 0.00 2.57
1965 3827 2.438434 AATTTCCTCAGGCCGCCG 60.438 61.111 3.05 0.00 0.00 6.46
2043 3908 7.923878 TGTTTTATGCTGATTGATTCATCCATG 59.076 33.333 0.00 0.00 32.72 3.66
2044 3909 7.591421 TTTATGCTGATTGATTCATCCATGT 57.409 32.000 0.00 0.00 32.72 3.21
2045 3910 7.591421 TTATGCTGATTGATTCATCCATGTT 57.409 32.000 0.00 0.00 32.72 2.71
2046 3911 5.925506 TGCTGATTGATTCATCCATGTTT 57.074 34.783 0.00 0.00 32.72 2.83
2047 3912 5.898174 TGCTGATTGATTCATCCATGTTTC 58.102 37.500 0.00 0.00 32.72 2.78
2078 3949 3.384146 TGTTAACCACAGTACTCGGACAA 59.616 43.478 13.70 5.26 0.00 3.18
2135 4012 6.035435 CGGCTGATGAGAGAAATTATTATCCG 59.965 42.308 0.00 0.00 0.00 4.18
2152 4029 6.544038 TTATCCGTTGATCTGTAATGCATG 57.456 37.500 0.00 0.00 32.18 4.06
2248 4125 6.098409 TCCTCCTACAACTTTATGGAGTGATC 59.902 42.308 0.00 0.00 41.83 2.92
2249 4126 5.902681 TCCTACAACTTTATGGAGTGATCG 58.097 41.667 0.00 0.00 28.47 3.69
2288 4193 1.956297 TGCTAGCTAGTCCGAGAGAC 58.044 55.000 21.62 2.71 46.71 3.36
2313 4218 2.988570 TCTCGTCTCTGAGAAGTACCC 58.011 52.381 17.94 1.25 41.87 3.69
2362 4271 7.384115 TGATGTAGTTAACTTGCTAGTTGTGTC 59.616 37.037 21.56 10.03 44.22 3.67
2390 4300 7.945033 TTTCATCAAATAAAAAGACCTGTGC 57.055 32.000 0.00 0.00 0.00 4.57
2404 4314 0.520404 CTGTGCGATCTTGCTTGCTT 59.480 50.000 0.00 0.00 35.36 3.91
2408 4318 0.654683 GCGATCTTGCTTGCTTCGAT 59.345 50.000 10.20 3.13 31.74 3.59
2411 4321 3.375642 CGATCTTGCTTGCTTCGATCTA 58.624 45.455 13.05 0.00 31.74 1.98
2442 4352 3.807538 CATCCTGCCTGCGTGCAC 61.808 66.667 6.82 6.82 36.04 4.57
2452 4362 4.465512 GCGTGCACGATTGGGCTG 62.466 66.667 41.19 10.87 43.02 4.85
2564 4475 5.195940 TCCAATTAATCTTCAGCAAGGAGG 58.804 41.667 0.00 0.00 0.00 4.30
2652 4565 5.088680 TCACACATGCATCTACATCTGAA 57.911 39.130 0.00 0.00 0.00 3.02
2752 4665 7.201848 ATACTTTTGTATGCATCCAATGACTGG 60.202 37.037 0.19 0.00 44.09 4.00
2919 4832 5.554437 TTGATACCAGTGTACTGTTCCAA 57.446 39.130 10.80 6.73 42.27 3.53
2920 4833 4.890088 TGATACCAGTGTACTGTTCCAAC 58.110 43.478 10.80 0.00 42.27 3.77
2921 4834 2.234300 ACCAGTGTACTGTTCCAACG 57.766 50.000 10.80 0.00 42.27 4.10
2946 4859 5.745294 CCAAATATGTCAGCACTAATGTTGC 59.255 40.000 0.00 0.00 37.00 4.17
2950 4863 2.488937 TGTCAGCACTAATGTTGCATGG 59.511 45.455 0.00 0.00 37.00 3.66
2951 4864 2.093890 TCAGCACTAATGTTGCATGGG 58.906 47.619 0.00 0.00 37.00 4.00
2952 4865 0.819582 AGCACTAATGTTGCATGGGC 59.180 50.000 0.00 0.00 41.68 5.36
2964 4877 1.794512 GCATGGGCAAAATTTCGTGT 58.205 45.000 0.00 0.00 40.72 4.49
2965 4878 2.142319 GCATGGGCAAAATTTCGTGTT 58.858 42.857 0.00 0.00 40.72 3.32
2966 4879 2.547634 GCATGGGCAAAATTTCGTGTTT 59.452 40.909 0.00 0.00 40.72 2.83
2967 4880 3.003171 GCATGGGCAAAATTTCGTGTTTT 59.997 39.130 0.00 0.00 40.72 2.43
2968 4881 4.525686 CATGGGCAAAATTTCGTGTTTTG 58.474 39.130 14.02 14.02 45.01 2.44
2969 4882 3.861840 TGGGCAAAATTTCGTGTTTTGA 58.138 36.364 19.19 4.00 45.02 2.69
2971 4884 4.190304 GGCAAAATTTCGTGTTTTGACC 57.810 40.909 19.19 16.15 44.81 4.02
2972 4885 3.001838 GGCAAAATTTCGTGTTTTGACCC 59.998 43.478 19.19 11.78 44.81 4.46
2973 4886 3.868661 GCAAAATTTCGTGTTTTGACCCT 59.131 39.130 19.19 0.00 45.02 4.34
2974 4887 4.331443 GCAAAATTTCGTGTTTTGACCCTT 59.669 37.500 19.19 0.00 45.02 3.95
2975 4888 5.163804 GCAAAATTTCGTGTTTTGACCCTTT 60.164 36.000 19.19 0.00 45.02 3.11
2976 4889 6.621812 GCAAAATTTCGTGTTTTGACCCTTTT 60.622 34.615 19.19 0.00 45.02 2.27
2977 4890 7.301789 CAAAATTTCGTGTTTTGACCCTTTTT 58.698 30.769 13.46 0.00 45.02 1.94
3018 4931 9.687210 AATTTGACCCTACTTCGTAAAAATTTC 57.313 29.630 0.00 0.00 0.00 2.17
3019 4932 7.804843 TTGACCCTACTTCGTAAAAATTTCA 57.195 32.000 0.00 0.00 0.00 2.69
3020 4933 7.429636 TGACCCTACTTCGTAAAAATTTCAG 57.570 36.000 0.00 0.00 0.00 3.02
3021 4934 6.428771 TGACCCTACTTCGTAAAAATTTCAGG 59.571 38.462 0.00 0.00 0.00 3.86
3022 4935 6.536447 ACCCTACTTCGTAAAAATTTCAGGA 58.464 36.000 0.00 0.00 0.00 3.86
3023 4936 7.173032 ACCCTACTTCGTAAAAATTTCAGGAT 58.827 34.615 0.00 0.00 0.00 3.24
3024 4937 8.323567 ACCCTACTTCGTAAAAATTTCAGGATA 58.676 33.333 0.00 0.00 0.00 2.59
3025 4938 9.338622 CCCTACTTCGTAAAAATTTCAGGATAT 57.661 33.333 0.00 0.00 0.00 1.63
3029 4942 8.674607 ACTTCGTAAAAATTTCAGGATATGACC 58.325 33.333 0.00 0.00 37.77 4.02
3030 4943 7.562454 TCGTAAAAATTTCAGGATATGACCC 57.438 36.000 0.00 0.00 37.77 4.46
3031 4944 7.343357 TCGTAAAAATTTCAGGATATGACCCT 58.657 34.615 0.00 0.00 37.77 4.34
3032 4945 7.832187 TCGTAAAAATTTCAGGATATGACCCTT 59.168 33.333 0.00 0.00 37.77 3.95
3033 4946 8.466798 CGTAAAAATTTCAGGATATGACCCTTT 58.533 33.333 0.00 0.00 37.77 3.11
3038 4951 9.547279 AAATTTCAGGATATGACCCTTTTTACT 57.453 29.630 0.00 0.00 37.77 2.24
3040 4953 9.628500 ATTTCAGGATATGACCCTTTTTACTAC 57.372 33.333 0.00 0.00 37.77 2.73
3041 4954 7.133133 TCAGGATATGACCCTTTTTACTACC 57.867 40.000 0.00 0.00 31.12 3.18
3042 4955 6.674861 TCAGGATATGACCCTTTTTACTACCA 59.325 38.462 0.00 0.00 31.12 3.25
3043 4956 6.766467 CAGGATATGACCCTTTTTACTACCAC 59.234 42.308 0.00 0.00 0.00 4.16
3044 4957 6.060136 GGATATGACCCTTTTTACTACCACC 58.940 44.000 0.00 0.00 0.00 4.61
3045 4958 3.405823 TGACCCTTTTTACTACCACCG 57.594 47.619 0.00 0.00 0.00 4.94
3046 4959 2.705127 TGACCCTTTTTACTACCACCGT 59.295 45.455 0.00 0.00 0.00 4.83
3047 4960 3.244181 TGACCCTTTTTACTACCACCGTC 60.244 47.826 0.00 0.00 0.00 4.79
3048 4961 2.289010 ACCCTTTTTACTACCACCGTCG 60.289 50.000 0.00 0.00 0.00 5.12
3049 4962 2.289010 CCCTTTTTACTACCACCGTCGT 60.289 50.000 0.00 0.00 0.00 4.34
3050 4963 2.989166 CCTTTTTACTACCACCGTCGTC 59.011 50.000 0.00 0.00 0.00 4.20
3051 4964 3.305608 CCTTTTTACTACCACCGTCGTCT 60.306 47.826 0.00 0.00 0.00 4.18
3052 4965 3.559238 TTTTACTACCACCGTCGTCTC 57.441 47.619 0.00 0.00 0.00 3.36
3053 4966 1.453155 TTACTACCACCGTCGTCTCC 58.547 55.000 0.00 0.00 0.00 3.71
3054 4967 0.740868 TACTACCACCGTCGTCTCCG 60.741 60.000 0.00 0.00 0.00 4.63
3062 4975 3.885521 GTCGTCTCCGGCGGTAGG 61.886 72.222 27.32 19.69 33.95 3.18
3065 4978 2.517875 GTCTCCGGCGGTAGGCTA 60.518 66.667 27.32 3.85 42.94 3.93
3066 4979 2.123428 GTCTCCGGCGGTAGGCTAA 61.123 63.158 27.32 2.99 42.94 3.09
3067 4980 1.380246 TCTCCGGCGGTAGGCTAAA 60.380 57.895 27.32 2.13 42.94 1.85
3068 4981 0.971959 TCTCCGGCGGTAGGCTAAAA 60.972 55.000 27.32 1.28 42.94 1.52
3069 4982 0.808847 CTCCGGCGGTAGGCTAAAAC 60.809 60.000 27.32 0.00 42.94 2.43
3070 4983 1.078988 CCGGCGGTAGGCTAAAACA 60.079 57.895 19.97 0.00 42.94 2.83
3071 4984 1.087771 CCGGCGGTAGGCTAAAACAG 61.088 60.000 19.97 0.00 42.94 3.16
3072 4985 0.108520 CGGCGGTAGGCTAAAACAGA 60.109 55.000 0.00 0.00 42.94 3.41
3073 4986 1.366679 GGCGGTAGGCTAAAACAGAC 58.633 55.000 0.00 0.00 42.94 3.51
3075 4988 2.167075 GGCGGTAGGCTAAAACAGACTA 59.833 50.000 0.00 0.00 42.72 2.59
3079 4992 2.381725 AGGCTAAAACAGACTACCGC 57.618 50.000 0.00 0.00 42.72 5.68
3080 4993 1.066358 AGGCTAAAACAGACTACCGCC 60.066 52.381 0.00 0.00 42.72 6.13
3081 4994 1.338389 GGCTAAAACAGACTACCGCCA 60.338 52.381 0.00 0.00 36.37 5.69
3082 4995 1.730612 GCTAAAACAGACTACCGCCAC 59.269 52.381 0.00 0.00 0.00 5.01
3083 4996 2.868839 GCTAAAACAGACTACCGCCACA 60.869 50.000 0.00 0.00 0.00 4.17
3084 4997 1.878953 AAAACAGACTACCGCCACAG 58.121 50.000 0.00 0.00 0.00 3.66
3085 4998 0.756903 AAACAGACTACCGCCACAGT 59.243 50.000 0.00 0.00 0.00 3.55
3086 4999 0.317479 AACAGACTACCGCCACAGTC 59.683 55.000 0.00 0.00 41.25 3.51
3087 5000 0.826256 ACAGACTACCGCCACAGTCA 60.826 55.000 8.45 0.00 42.99 3.41
3088 5001 0.317160 CAGACTACCGCCACAGTCAA 59.683 55.000 8.45 0.00 42.99 3.18
3089 5002 1.066858 CAGACTACCGCCACAGTCAAT 60.067 52.381 8.45 0.00 42.99 2.57
3090 5003 1.066858 AGACTACCGCCACAGTCAATG 60.067 52.381 8.45 0.00 42.99 2.82
3091 5004 0.036388 ACTACCGCCACAGTCAATGG 60.036 55.000 0.00 0.00 40.50 3.16
3097 5010 2.767536 CCACAGTCAATGGCGGTAG 58.232 57.895 0.00 0.00 0.00 3.18
3098 5011 1.369091 CCACAGTCAATGGCGGTAGC 61.369 60.000 0.00 0.00 44.18 3.58
3105 5018 3.281332 AATGGCGGTAGCAATTGGT 57.719 47.368 15.47 15.47 44.88 3.67
3106 5019 1.102978 AATGGCGGTAGCAATTGGTC 58.897 50.000 14.50 6.02 44.88 4.02
3107 5020 1.615651 AATGGCGGTAGCAATTGGTCA 60.616 47.619 14.50 5.92 44.88 4.02
3108 5021 3.144350 AATGGCGGTAGCAATTGGTCAA 61.144 45.455 14.50 0.00 44.88 3.18
3109 5022 3.694889 GCGGTAGCAATTGGTCAAC 57.305 52.632 14.50 7.71 44.35 3.18
3110 5023 0.878416 GCGGTAGCAATTGGTCAACA 59.122 50.000 14.50 0.00 44.35 3.33
3111 5024 1.401018 GCGGTAGCAATTGGTCAACAC 60.401 52.381 14.50 6.57 44.35 3.32
3112 5025 2.151202 CGGTAGCAATTGGTCAACACT 58.849 47.619 14.50 0.00 0.00 3.55
3113 5026 3.331150 CGGTAGCAATTGGTCAACACTA 58.669 45.455 14.50 0.00 0.00 2.74
3114 5027 3.749088 CGGTAGCAATTGGTCAACACTAA 59.251 43.478 14.50 0.00 0.00 2.24
3115 5028 4.214545 CGGTAGCAATTGGTCAACACTAAA 59.785 41.667 14.50 0.00 0.00 1.85
3116 5029 5.278071 CGGTAGCAATTGGTCAACACTAAAA 60.278 40.000 14.50 0.00 0.00 1.52
3117 5030 5.918576 GGTAGCAATTGGTCAACACTAAAAC 59.081 40.000 14.50 2.44 0.00 2.43
3118 5031 4.606961 AGCAATTGGTCAACACTAAAACG 58.393 39.130 3.82 0.00 0.00 3.60
3119 5032 3.733727 GCAATTGGTCAACACTAAAACGG 59.266 43.478 7.72 0.00 0.00 4.44
3120 5033 3.636282 ATTGGTCAACACTAAAACGGC 57.364 42.857 0.00 0.00 0.00 5.68
3121 5034 0.938713 TGGTCAACACTAAAACGGCG 59.061 50.000 4.80 4.80 0.00 6.46
3122 5035 0.939419 GGTCAACACTAAAACGGCGT 59.061 50.000 6.77 6.77 0.00 5.68
3123 5036 1.331447 GGTCAACACTAAAACGGCGTT 59.669 47.619 21.19 21.19 0.00 4.84
3124 5037 2.223317 GGTCAACACTAAAACGGCGTTT 60.223 45.455 30.41 30.41 37.34 3.60
3125 5038 2.779471 GTCAACACTAAAACGGCGTTTG 59.221 45.455 35.23 26.00 35.80 2.93
3126 5039 1.515221 CAACACTAAAACGGCGTTTGC 59.485 47.619 35.23 0.00 35.80 3.68
3127 5040 1.018910 ACACTAAAACGGCGTTTGCT 58.981 45.000 35.23 23.95 42.25 3.91
3128 5041 2.211806 ACACTAAAACGGCGTTTGCTA 58.788 42.857 35.23 23.79 42.25 3.49
3129 5042 2.222445 ACACTAAAACGGCGTTTGCTAG 59.778 45.455 35.23 31.52 42.25 3.42
3130 5043 1.802365 ACTAAAACGGCGTTTGCTAGG 59.198 47.619 35.23 23.77 42.25 3.02
3131 5044 1.802365 CTAAAACGGCGTTTGCTAGGT 59.198 47.619 35.23 21.88 42.25 3.08
3132 5045 1.881591 AAAACGGCGTTTGCTAGGTA 58.118 45.000 35.23 0.00 42.25 3.08
3133 5046 1.150827 AAACGGCGTTTGCTAGGTAC 58.849 50.000 34.30 0.00 42.25 3.34
3134 5047 0.033781 AACGGCGTTTGCTAGGTACA 59.966 50.000 21.19 0.00 42.25 2.90
3135 5048 0.389426 ACGGCGTTTGCTAGGTACAG 60.389 55.000 6.77 0.00 42.25 2.74
3136 5049 0.108992 CGGCGTTTGCTAGGTACAGA 60.109 55.000 0.00 0.00 42.25 3.41
3137 5050 1.641577 GGCGTTTGCTAGGTACAGAG 58.358 55.000 0.00 0.00 42.25 3.35
3138 5051 1.641577 GCGTTTGCTAGGTACAGAGG 58.358 55.000 0.00 0.00 38.39 3.69
3139 5052 1.641577 CGTTTGCTAGGTACAGAGGC 58.358 55.000 0.00 0.00 0.00 4.70
3140 5053 1.739371 CGTTTGCTAGGTACAGAGGCC 60.739 57.143 0.00 0.00 0.00 5.19
3141 5054 1.555533 GTTTGCTAGGTACAGAGGCCT 59.444 52.381 3.86 3.86 38.81 5.19
3142 5055 2.764572 GTTTGCTAGGTACAGAGGCCTA 59.235 50.000 4.42 0.00 36.38 3.93
3143 5056 2.068834 TGCTAGGTACAGAGGCCTAC 57.931 55.000 4.42 0.00 36.38 3.18
3144 5057 1.330234 GCTAGGTACAGAGGCCTACC 58.670 60.000 13.80 13.80 36.38 3.18
3145 5058 1.606903 CTAGGTACAGAGGCCTACCG 58.393 60.000 15.38 5.48 42.76 4.02
3146 5059 0.466922 TAGGTACAGAGGCCTACCGC 60.467 60.000 15.38 0.00 42.76 5.68
3148 5061 0.466922 GGTACAGAGGCCTACCGCTA 60.467 60.000 4.42 0.00 45.49 4.26
3149 5062 1.618487 GTACAGAGGCCTACCGCTAT 58.382 55.000 4.42 0.00 45.49 2.97
3150 5063 2.553904 GGTACAGAGGCCTACCGCTATA 60.554 54.545 4.42 0.00 45.49 1.31
3151 5064 1.912417 ACAGAGGCCTACCGCTATAG 58.088 55.000 4.42 0.00 45.49 1.31
3152 5065 0.528470 CAGAGGCCTACCGCTATAGC 59.472 60.000 15.09 15.09 45.49 2.97
3153 5066 0.406361 AGAGGCCTACCGCTATAGCT 59.594 55.000 21.98 7.41 45.40 3.32
3154 5067 1.634459 AGAGGCCTACCGCTATAGCTA 59.366 52.381 21.98 8.19 45.40 3.32
3155 5068 1.744522 GAGGCCTACCGCTATAGCTAC 59.255 57.143 21.98 5.29 42.76 3.58
3156 5069 0.816373 GGCCTACCGCTATAGCTACC 59.184 60.000 21.98 10.22 39.32 3.18
3157 5070 1.616456 GGCCTACCGCTATAGCTACCT 60.616 57.143 21.98 4.63 39.32 3.08
3158 5071 2.169330 GCCTACCGCTATAGCTACCTT 58.831 52.381 21.98 4.69 39.32 3.50
3159 5072 3.350833 GCCTACCGCTATAGCTACCTTA 58.649 50.000 21.98 5.54 39.32 2.69
3160 5073 3.128415 GCCTACCGCTATAGCTACCTTAC 59.872 52.174 21.98 3.30 39.32 2.34
3161 5074 3.693578 CCTACCGCTATAGCTACCTTACC 59.306 52.174 21.98 0.00 39.32 2.85
3162 5075 3.234234 ACCGCTATAGCTACCTTACCA 57.766 47.619 21.98 0.00 39.32 3.25
3163 5076 3.155501 ACCGCTATAGCTACCTTACCAG 58.844 50.000 21.98 2.85 39.32 4.00
3164 5077 2.094649 CCGCTATAGCTACCTTACCAGC 60.095 54.545 21.98 0.00 39.32 4.85
3165 5078 2.094649 CGCTATAGCTACCTTACCAGCC 60.095 54.545 21.98 0.00 38.61 4.85
3166 5079 2.897969 GCTATAGCTACCTTACCAGCCA 59.102 50.000 17.75 0.00 38.61 4.75
3167 5080 3.323979 GCTATAGCTACCTTACCAGCCAA 59.676 47.826 17.75 0.00 38.61 4.52
3168 5081 4.020128 GCTATAGCTACCTTACCAGCCAAT 60.020 45.833 17.75 0.00 38.61 3.16
3169 5082 4.625607 ATAGCTACCTTACCAGCCAATC 57.374 45.455 0.00 0.00 38.61 2.67
3170 5083 2.482494 AGCTACCTTACCAGCCAATCT 58.518 47.619 0.00 0.00 38.61 2.40
3171 5084 2.846827 AGCTACCTTACCAGCCAATCTT 59.153 45.455 0.00 0.00 38.61 2.40
3172 5085 3.267031 AGCTACCTTACCAGCCAATCTTT 59.733 43.478 0.00 0.00 38.61 2.52
3173 5086 4.017126 GCTACCTTACCAGCCAATCTTTT 58.983 43.478 0.00 0.00 0.00 2.27
3174 5087 5.045140 AGCTACCTTACCAGCCAATCTTTTA 60.045 40.000 0.00 0.00 38.61 1.52
3175 5088 5.828328 GCTACCTTACCAGCCAATCTTTTAT 59.172 40.000 0.00 0.00 0.00 1.40
3176 5089 6.321435 GCTACCTTACCAGCCAATCTTTTATT 59.679 38.462 0.00 0.00 0.00 1.40
3177 5090 7.147897 GCTACCTTACCAGCCAATCTTTTATTT 60.148 37.037 0.00 0.00 0.00 1.40
3178 5091 7.553504 ACCTTACCAGCCAATCTTTTATTTT 57.446 32.000 0.00 0.00 0.00 1.82
3179 5092 8.658840 ACCTTACCAGCCAATCTTTTATTTTA 57.341 30.769 0.00 0.00 0.00 1.52
3180 5093 9.267071 ACCTTACCAGCCAATCTTTTATTTTAT 57.733 29.630 0.00 0.00 0.00 1.40
3185 5098 9.435688 ACCAGCCAATCTTTTATTTTATTTGTC 57.564 29.630 0.00 0.00 0.00 3.18
3186 5099 8.594687 CCAGCCAATCTTTTATTTTATTTGTCG 58.405 33.333 0.00 0.00 0.00 4.35
3187 5100 9.139174 CAGCCAATCTTTTATTTTATTTGTCGT 57.861 29.630 0.00 0.00 0.00 4.34
3188 5101 9.139174 AGCCAATCTTTTATTTTATTTGTCGTG 57.861 29.630 0.00 0.00 0.00 4.35
3189 5102 7.897800 GCCAATCTTTTATTTTATTTGTCGTGC 59.102 33.333 0.00 0.00 0.00 5.34
3190 5103 8.920665 CCAATCTTTTATTTTATTTGTCGTGCA 58.079 29.630 0.00 0.00 0.00 4.57
3193 5106 8.459521 TCTTTTATTTTATTTGTCGTGCATGG 57.540 30.769 5.98 0.00 0.00 3.66
3194 5107 6.639671 TTTATTTTATTTGTCGTGCATGGC 57.360 33.333 2.79 2.79 0.00 4.40
3195 5108 3.932545 TTTTATTTGTCGTGCATGGCT 57.067 38.095 12.54 0.00 0.00 4.75
3196 5109 2.917701 TTATTTGTCGTGCATGGCTG 57.082 45.000 12.54 0.00 0.00 4.85
3207 5120 3.562639 CATGGCTGCATCGATTTGG 57.437 52.632 0.50 0.00 0.00 3.28
3208 5121 0.031585 CATGGCTGCATCGATTTGGG 59.968 55.000 0.50 0.00 0.00 4.12
3209 5122 0.396139 ATGGCTGCATCGATTTGGGT 60.396 50.000 0.50 0.00 0.00 4.51
3210 5123 1.031571 TGGCTGCATCGATTTGGGTC 61.032 55.000 0.50 0.00 0.00 4.46
3211 5124 1.031571 GGCTGCATCGATTTGGGTCA 61.032 55.000 0.50 0.00 0.00 4.02
3212 5125 1.027357 GCTGCATCGATTTGGGTCAT 58.973 50.000 0.00 0.00 0.00 3.06
3213 5126 2.221169 GCTGCATCGATTTGGGTCATA 58.779 47.619 0.00 0.00 0.00 2.15
3214 5127 2.618241 GCTGCATCGATTTGGGTCATAA 59.382 45.455 0.00 0.00 0.00 1.90
3215 5128 3.548818 GCTGCATCGATTTGGGTCATAAC 60.549 47.826 0.00 0.00 0.00 1.89
3216 5129 2.948979 TGCATCGATTTGGGTCATAACC 59.051 45.455 0.00 0.00 45.65 2.85
3217 5130 3.214328 GCATCGATTTGGGTCATAACCT 58.786 45.455 0.00 0.00 45.66 3.50
3218 5131 3.251004 GCATCGATTTGGGTCATAACCTC 59.749 47.826 0.00 0.00 45.66 3.85
3219 5132 4.708177 CATCGATTTGGGTCATAACCTCT 58.292 43.478 0.00 0.00 45.66 3.69
3220 5133 4.402056 TCGATTTGGGTCATAACCTCTC 57.598 45.455 0.00 0.00 45.66 3.20
3221 5134 4.030913 TCGATTTGGGTCATAACCTCTCT 58.969 43.478 0.00 0.00 45.66 3.10
3222 5135 4.122776 CGATTTGGGTCATAACCTCTCTG 58.877 47.826 0.00 0.00 45.66 3.35
3223 5136 3.350219 TTTGGGTCATAACCTCTCTGC 57.650 47.619 0.00 0.00 45.66 4.26
3224 5137 1.204146 TGGGTCATAACCTCTCTGCC 58.796 55.000 0.00 0.00 45.66 4.85
3225 5138 1.204146 GGGTCATAACCTCTCTGCCA 58.796 55.000 0.00 0.00 45.66 4.92
3226 5139 1.134371 GGGTCATAACCTCTCTGCCAC 60.134 57.143 0.00 0.00 45.66 5.01
3227 5140 1.834263 GGTCATAACCTCTCTGCCACT 59.166 52.381 0.00 0.00 42.80 4.00
3228 5141 2.159028 GGTCATAACCTCTCTGCCACTC 60.159 54.545 0.00 0.00 42.80 3.51
3229 5142 2.763448 GTCATAACCTCTCTGCCACTCT 59.237 50.000 0.00 0.00 0.00 3.24
3230 5143 3.196685 GTCATAACCTCTCTGCCACTCTT 59.803 47.826 0.00 0.00 0.00 2.85
3231 5144 3.840666 TCATAACCTCTCTGCCACTCTTT 59.159 43.478 0.00 0.00 0.00 2.52
3232 5145 5.023452 TCATAACCTCTCTGCCACTCTTTA 58.977 41.667 0.00 0.00 0.00 1.85
3233 5146 5.483937 TCATAACCTCTCTGCCACTCTTTAA 59.516 40.000 0.00 0.00 0.00 1.52
3234 5147 3.971245 ACCTCTCTGCCACTCTTTAAG 57.029 47.619 0.00 0.00 0.00 1.85
3235 5148 2.027653 ACCTCTCTGCCACTCTTTAAGC 60.028 50.000 0.00 0.00 0.00 3.09
3236 5149 2.027745 CCTCTCTGCCACTCTTTAAGCA 60.028 50.000 0.00 0.00 0.00 3.91
3237 5150 2.999355 CTCTCTGCCACTCTTTAAGCAC 59.001 50.000 0.00 0.00 0.00 4.40
3238 5151 2.634940 TCTCTGCCACTCTTTAAGCACT 59.365 45.455 0.00 0.00 0.00 4.40
3239 5152 2.999355 CTCTGCCACTCTTTAAGCACTC 59.001 50.000 0.00 0.00 0.00 3.51
3240 5153 2.634940 TCTGCCACTCTTTAAGCACTCT 59.365 45.455 0.00 0.00 0.00 3.24
3241 5154 3.832490 TCTGCCACTCTTTAAGCACTCTA 59.168 43.478 0.00 0.00 0.00 2.43
3242 5155 4.081972 TCTGCCACTCTTTAAGCACTCTAG 60.082 45.833 0.00 0.00 0.00 2.43
3243 5156 3.578716 TGCCACTCTTTAAGCACTCTAGT 59.421 43.478 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 6.830324 ACATGTAACTGATCAATGCCTTATGT 59.170 34.615 0.00 0.00 0.00 2.29
200 206 5.853282 GCCAAAGAAAAGTATATATGCAGCG 59.147 40.000 3.52 0.00 0.00 5.18
399 2192 6.492429 CCCATGTGGTCAATCATTTCATCTAT 59.508 38.462 0.00 0.00 0.00 1.98
433 2226 5.867330 TCTGATGGGATGTTTGCAATTTTT 58.133 33.333 0.00 0.00 0.00 1.94
612 2406 7.750229 TTATGGTCTTATGGCATCTGATTTC 57.250 36.000 1.65 0.00 0.00 2.17
731 2525 2.729692 GCCCTAGGCTACGCTAGAA 58.270 57.895 2.05 0.00 46.69 2.10
783 2577 4.218635 TCCTTATGAACCGATGCTAGCTAG 59.781 45.833 16.84 16.84 0.00 3.42
784 2578 4.149598 TCCTTATGAACCGATGCTAGCTA 58.850 43.478 17.23 2.58 0.00 3.32
808 2602 1.246737 GCTTCCTTTGGCCTCCACAG 61.247 60.000 3.32 0.00 30.78 3.66
813 2607 1.311651 GCTGAGCTTCCTTTGGCCTC 61.312 60.000 3.32 0.00 0.00 4.70
844 2643 8.097662 TCTTCTTCTTCTTCTTCTTTGGTATCC 58.902 37.037 0.00 0.00 0.00 2.59
856 2655 7.102993 GCATACCTTCTTCTTCTTCTTCTTCT 58.897 38.462 0.00 0.00 0.00 2.85
857 2656 6.876257 TGCATACCTTCTTCTTCTTCTTCTTC 59.124 38.462 0.00 0.00 0.00 2.87
859 2658 6.365970 TGCATACCTTCTTCTTCTTCTTCT 57.634 37.500 0.00 0.00 0.00 2.85
860 2659 6.038050 CCATGCATACCTTCTTCTTCTTCTTC 59.962 42.308 0.00 0.00 0.00 2.87
861 2660 5.884792 CCATGCATACCTTCTTCTTCTTCTT 59.115 40.000 0.00 0.00 0.00 2.52
862 2661 5.045286 ACCATGCATACCTTCTTCTTCTTCT 60.045 40.000 0.00 0.00 0.00 2.85
863 2662 5.189180 ACCATGCATACCTTCTTCTTCTTC 58.811 41.667 0.00 0.00 0.00 2.87
864 2663 5.184892 ACCATGCATACCTTCTTCTTCTT 57.815 39.130 0.00 0.00 0.00 2.52
865 2664 4.851639 ACCATGCATACCTTCTTCTTCT 57.148 40.909 0.00 0.00 0.00 2.85
895 2694 7.499232 AGAGTAGCTAAGAACAAAAGAAAAGCA 59.501 33.333 0.00 0.00 0.00 3.91
899 2698 7.709613 ACGAAGAGTAGCTAAGAACAAAAGAAA 59.290 33.333 0.00 0.00 0.00 2.52
900 2699 7.208080 ACGAAGAGTAGCTAAGAACAAAAGAA 58.792 34.615 0.00 0.00 0.00 2.52
901 2700 6.746120 ACGAAGAGTAGCTAAGAACAAAAGA 58.254 36.000 0.00 0.00 0.00 2.52
902 2701 7.409465 AACGAAGAGTAGCTAAGAACAAAAG 57.591 36.000 0.00 0.00 0.00 2.27
903 2702 6.143438 CGAACGAAGAGTAGCTAAGAACAAAA 59.857 38.462 0.00 0.00 0.00 2.44
967 2776 2.050144 TGAGCTTCTTCACCTTCCTGT 58.950 47.619 0.00 0.00 0.00 4.00
997 2806 1.299648 CCCTGCCGTCTTCCATCAA 59.700 57.895 0.00 0.00 0.00 2.57
1041 2850 2.202797 GCGGATCTGCTTCTGCGA 60.203 61.111 19.63 0.00 43.34 5.10
1056 2865 2.287308 TGAAAAGTTGTGGAAATCGGCG 60.287 45.455 0.00 0.00 0.00 6.46
1071 2880 2.949644 ACGACCAACCCTTTCTGAAAAG 59.050 45.455 4.18 0.00 41.36 2.27
1086 2895 0.821301 TGCCTGCATCAAAACGACCA 60.821 50.000 0.00 0.00 0.00 4.02
1090 2899 2.287644 TCGATATGCCTGCATCAAAACG 59.712 45.455 8.09 8.49 37.82 3.60
1094 2903 1.068434 TCGTCGATATGCCTGCATCAA 59.932 47.619 8.09 0.00 37.82 2.57
1096 2905 1.783284 TTCGTCGATATGCCTGCATC 58.217 50.000 8.09 0.00 37.82 3.91
1102 2911 3.980238 GATGTGATTCGTCGATATGCC 57.020 47.619 0.00 0.00 0.00 4.40
1114 2923 0.246360 TCGGCTGTGACGATGTGATT 59.754 50.000 0.00 0.00 38.55 2.57
1155 2966 6.318900 GGTAGAAATTAAACTCAGGGACATGG 59.681 42.308 0.00 0.00 0.00 3.66
1157 2968 7.112779 CAGGTAGAAATTAAACTCAGGGACAT 58.887 38.462 0.00 0.00 0.00 3.06
1161 2972 6.472887 TCACAGGTAGAAATTAAACTCAGGG 58.527 40.000 0.00 0.00 0.00 4.45
1168 2979 9.226606 CTACAACCATCACAGGTAGAAATTAAA 57.773 33.333 0.00 0.00 42.25 1.52
1171 2982 5.648092 GCTACAACCATCACAGGTAGAAATT 59.352 40.000 0.00 0.00 42.25 1.82
1178 2989 0.036388 CCGCTACAACCATCACAGGT 60.036 55.000 0.00 0.00 45.91 4.00
1179 2990 0.249120 TCCGCTACAACCATCACAGG 59.751 55.000 0.00 0.00 0.00 4.00
1180 2991 1.204704 TCTCCGCTACAACCATCACAG 59.795 52.381 0.00 0.00 0.00 3.66
1183 2994 0.172578 CGTCTCCGCTACAACCATCA 59.827 55.000 0.00 0.00 0.00 3.07
1185 2996 1.515954 CCGTCTCCGCTACAACCAT 59.484 57.895 0.00 0.00 0.00 3.55
1187 2998 1.673808 ATCCCGTCTCCGCTACAACC 61.674 60.000 0.00 0.00 0.00 3.77
1188 2999 1.027357 TATCCCGTCTCCGCTACAAC 58.973 55.000 0.00 0.00 0.00 3.32
1195 3006 2.604855 CGTTGATCTTATCCCGTCTCCG 60.605 54.545 0.00 0.00 0.00 4.63
1233 3044 2.289694 GCAGTTTGGGAGTAGCTCTTGA 60.290 50.000 0.00 0.00 0.00 3.02
1245 3056 1.463553 GGACCTTGGTGCAGTTTGGG 61.464 60.000 6.43 0.00 0.00 4.12
1342 3170 4.718858 TTAAATCAACAACGAGACCACG 57.281 40.909 0.00 0.00 39.31 4.94
1351 3179 7.749126 CCTTGTCCGTCTAATTAAATCAACAAC 59.251 37.037 0.00 0.00 0.00 3.32
1354 3182 7.094933 ACACCTTGTCCGTCTAATTAAATCAAC 60.095 37.037 0.00 0.00 0.00 3.18
1355 3183 6.938030 ACACCTTGTCCGTCTAATTAAATCAA 59.062 34.615 0.00 0.00 0.00 2.57
1382 3210 3.005261 AGTCGATCGCTTCATCTAGCATT 59.995 43.478 11.09 0.00 41.28 3.56
1468 3296 9.169592 CATGCATAATGAACCTGATCATATACA 57.830 33.333 0.00 0.00 39.08 2.29
1469 3297 9.170734 ACATGCATAATGAACCTGATCATATAC 57.829 33.333 0.00 0.00 39.08 1.47
1556 3399 4.712122 TCCGAATTAATTTTGACAGGCC 57.288 40.909 1.43 0.00 0.00 5.19
1613 3461 2.407616 CACATGCATGCAGCTCGG 59.592 61.111 26.69 14.37 45.94 4.63
1617 3465 2.601628 TTAGCGCACATGCATGCAGC 62.602 55.000 26.69 26.40 46.47 5.25
1618 3466 0.591488 CTTAGCGCACATGCATGCAG 60.591 55.000 26.69 19.49 46.47 4.41
1629 3477 7.551262 TCCTGAGATTAAAATTAACTTAGCGCA 59.449 33.333 11.47 0.00 0.00 6.09
1637 3487 7.432252 CCATTGCGTCCTGAGATTAAAATTAAC 59.568 37.037 0.00 0.00 0.00 2.01
1653 3510 4.632153 ACTAGTTGATATCCATTGCGTCC 58.368 43.478 0.00 0.00 0.00 4.79
1684 3544 3.130869 TGACCATTGACAAGCATAATGCC 59.869 43.478 0.00 0.00 46.52 4.40
1695 3555 4.583907 ACACAAATGACATGACCATTGACA 59.416 37.500 15.15 0.00 34.75 3.58
1698 3558 6.011476 TGTACACAAATGACATGACCATTG 57.989 37.500 15.15 11.58 34.75 2.82
1699 3559 6.839124 ATGTACACAAATGACATGACCATT 57.161 33.333 0.00 6.00 35.92 3.16
1713 3573 4.252878 CCAGCATCTGTACATGTACACAA 58.747 43.478 30.31 22.11 40.77 3.33
1714 3574 3.260632 ACCAGCATCTGTACATGTACACA 59.739 43.478 30.31 22.83 40.77 3.72
1715 3575 3.618594 CACCAGCATCTGTACATGTACAC 59.381 47.826 30.31 21.42 40.77 2.90
1718 3578 4.443315 CCATCACCAGCATCTGTACATGTA 60.443 45.833 0.08 0.08 0.00 2.29
1950 3812 3.185299 TTTCGGCGGCCTGAGGAAA 62.185 57.895 18.34 15.53 0.00 3.13
1965 3827 1.443802 GGGTGTAGAGCTGCAGTTTC 58.556 55.000 16.64 13.41 0.00 2.78
2043 3908 6.978080 ACTGTGGTTAACAATTGACATGAAAC 59.022 34.615 13.59 6.61 38.67 2.78
2044 3909 7.106439 ACTGTGGTTAACAATTGACATGAAA 57.894 32.000 13.59 0.00 38.67 2.69
2045 3910 6.707440 ACTGTGGTTAACAATTGACATGAA 57.293 33.333 13.59 0.00 38.67 2.57
2046 3911 6.995686 AGTACTGTGGTTAACAATTGACATGA 59.004 34.615 13.59 0.00 38.67 3.07
2047 3912 7.202016 AGTACTGTGGTTAACAATTGACATG 57.798 36.000 13.59 0.00 38.67 3.21
2078 3949 8.087982 CATTATGAGTAGTAATGCCGTTCAAT 57.912 34.615 0.00 0.00 34.06 2.57
2110 3987 6.035435 CGGATAATAATTTCTCTCATCAGCCG 59.965 42.308 0.00 0.00 0.00 5.52
2152 4029 1.751927 CCCCTCTGTTCCTGCATGC 60.752 63.158 11.82 11.82 0.00 4.06
2204 4081 1.981495 GAATTCCTCTCCGGGATCCAT 59.019 52.381 15.23 0.00 35.07 3.41
2312 4217 1.229853 ACCACTCCCCTTGGGTAGG 60.230 63.158 4.84 4.53 44.74 3.18
2313 4218 0.546747 TCACCACTCCCCTTGGGTAG 60.547 60.000 4.84 0.45 44.74 3.18
2329 4234 7.133891 AGCAAGTTAACTACATCACATTCAC 57.866 36.000 8.92 0.00 0.00 3.18
2381 4291 0.322975 AAGCAAGATCGCACAGGTCT 59.677 50.000 0.00 0.00 43.50 3.85
2382 4292 0.445436 CAAGCAAGATCGCACAGGTC 59.555 55.000 0.00 0.00 0.00 3.85
2383 4293 1.580845 GCAAGCAAGATCGCACAGGT 61.581 55.000 0.00 0.00 0.00 4.00
2384 4294 1.136147 GCAAGCAAGATCGCACAGG 59.864 57.895 0.00 0.00 0.00 4.00
2390 4300 2.200067 AGATCGAAGCAAGCAAGATCG 58.800 47.619 14.14 9.57 41.65 3.69
2404 4314 2.941860 GCCGGAGATGAGGATAGATCGA 60.942 54.545 5.05 0.00 0.00 3.59
2408 4318 2.451490 GATGCCGGAGATGAGGATAGA 58.549 52.381 5.05 0.00 0.00 1.98
2411 4321 0.178909 AGGATGCCGGAGATGAGGAT 60.179 55.000 5.05 0.00 0.00 3.24
2442 4352 2.289002 GCTCTGTTAATCAGCCCAATCG 59.711 50.000 1.53 0.00 43.32 3.34
2475 4385 5.295292 CCATGTTTGCTCACAGAGGTTATAG 59.705 44.000 0.00 0.00 0.00 1.31
2486 4396 2.749076 TGTGATAGCCATGTTTGCTCAC 59.251 45.455 0.00 3.68 40.23 3.51
2538 4449 5.829924 TCCTTGCTGAAGATTAATTGGATCC 59.170 40.000 4.20 4.20 0.00 3.36
2564 4475 4.099266 AGCATGTCTCCTGATAACTCTCAC 59.901 45.833 0.00 0.00 0.00 3.51
2595 4508 0.458370 CCCGGCAAAAGCATGTTAGC 60.458 55.000 0.00 0.00 0.00 3.09
2652 4565 4.083802 GCTTTGAATTGCGACTCTACAGTT 60.084 41.667 0.00 0.00 30.63 3.16
2746 4659 1.150536 GAAGTTGTGGGGCCAGTCA 59.849 57.895 4.39 0.00 0.00 3.41
2749 4662 1.903404 GGTGAAGTTGTGGGGCCAG 60.903 63.158 4.39 0.00 0.00 4.85
2752 4665 0.893727 ATTCGGTGAAGTTGTGGGGC 60.894 55.000 0.00 0.00 0.00 5.80
2919 4832 2.113860 AGTGCTGACATATTTGGCGT 57.886 45.000 0.00 0.00 31.31 5.68
2920 4833 4.035558 ACATTAGTGCTGACATATTTGGCG 59.964 41.667 0.00 0.00 31.31 5.69
2921 4834 5.505173 ACATTAGTGCTGACATATTTGGC 57.495 39.130 0.00 0.00 0.00 4.52
2946 4859 4.272018 TCAAAACACGAAATTTTGCCCATG 59.728 37.500 5.27 0.00 43.62 3.66
2950 4863 3.001838 GGGTCAAAACACGAAATTTTGCC 59.998 43.478 5.27 16.17 43.62 4.52
2951 4864 3.868661 AGGGTCAAAACACGAAATTTTGC 59.131 39.130 5.27 11.02 43.62 3.68
2952 4865 6.415798 AAAGGGTCAAAACACGAAATTTTG 57.584 33.333 3.73 3.73 44.74 2.44
2953 4866 7.441890 AAAAAGGGTCAAAACACGAAATTTT 57.558 28.000 0.00 0.00 32.44 1.82
2992 4905 9.687210 GAAATTTTTACGAAGTAGGGTCAAATT 57.313 29.630 0.00 0.00 46.93 1.82
2993 4906 8.852135 TGAAATTTTTACGAAGTAGGGTCAAAT 58.148 29.630 0.00 0.00 46.93 2.32
2994 4907 8.223177 TGAAATTTTTACGAAGTAGGGTCAAA 57.777 30.769 0.00 0.00 46.93 2.69
2995 4908 7.040961 CCTGAAATTTTTACGAAGTAGGGTCAA 60.041 37.037 0.00 0.00 46.93 3.18
2996 4909 6.428771 CCTGAAATTTTTACGAAGTAGGGTCA 59.571 38.462 0.00 0.00 46.93 4.02
2997 4910 6.652062 TCCTGAAATTTTTACGAAGTAGGGTC 59.348 38.462 0.00 0.00 46.93 4.46
2998 4911 6.536447 TCCTGAAATTTTTACGAAGTAGGGT 58.464 36.000 0.00 0.00 46.93 4.34
2999 4912 7.625828 ATCCTGAAATTTTTACGAAGTAGGG 57.374 36.000 0.00 0.00 46.93 3.53
3003 4916 8.674607 GGTCATATCCTGAAATTTTTACGAAGT 58.325 33.333 0.00 0.00 39.47 3.01
3004 4917 8.129211 GGGTCATATCCTGAAATTTTTACGAAG 58.871 37.037 0.00 0.00 35.07 3.79
3005 4918 7.832187 AGGGTCATATCCTGAAATTTTTACGAA 59.168 33.333 0.00 0.00 35.07 3.85
3006 4919 7.343357 AGGGTCATATCCTGAAATTTTTACGA 58.657 34.615 0.00 0.00 35.07 3.43
3007 4920 7.568199 AGGGTCATATCCTGAAATTTTTACG 57.432 36.000 0.00 0.00 35.07 3.18
3012 4925 9.547279 AGTAAAAAGGGTCATATCCTGAAATTT 57.453 29.630 0.00 0.00 35.07 1.82
3014 4927 9.628500 GTAGTAAAAAGGGTCATATCCTGAAAT 57.372 33.333 0.00 0.00 35.07 2.17
3015 4928 8.050930 GGTAGTAAAAAGGGTCATATCCTGAAA 58.949 37.037 0.00 0.00 35.07 2.69
3016 4929 7.183112 TGGTAGTAAAAAGGGTCATATCCTGAA 59.817 37.037 0.00 0.00 35.07 3.02
3017 4930 6.674861 TGGTAGTAAAAAGGGTCATATCCTGA 59.325 38.462 0.00 0.00 34.34 3.86
3018 4931 6.766467 GTGGTAGTAAAAAGGGTCATATCCTG 59.234 42.308 0.00 0.00 34.34 3.86
3019 4932 6.126565 GGTGGTAGTAAAAAGGGTCATATCCT 60.127 42.308 0.00 0.00 35.88 3.24
3020 4933 6.060136 GGTGGTAGTAAAAAGGGTCATATCC 58.940 44.000 0.00 0.00 0.00 2.59
3021 4934 5.756833 CGGTGGTAGTAAAAAGGGTCATATC 59.243 44.000 0.00 0.00 0.00 1.63
3022 4935 5.190330 ACGGTGGTAGTAAAAAGGGTCATAT 59.810 40.000 0.00 0.00 0.00 1.78
3023 4936 4.531732 ACGGTGGTAGTAAAAAGGGTCATA 59.468 41.667 0.00 0.00 0.00 2.15
3024 4937 3.328637 ACGGTGGTAGTAAAAAGGGTCAT 59.671 43.478 0.00 0.00 0.00 3.06
3025 4938 2.705127 ACGGTGGTAGTAAAAAGGGTCA 59.295 45.455 0.00 0.00 0.00 4.02
3026 4939 3.329386 GACGGTGGTAGTAAAAAGGGTC 58.671 50.000 0.00 0.00 0.00 4.46
3027 4940 2.289010 CGACGGTGGTAGTAAAAAGGGT 60.289 50.000 0.00 0.00 0.00 4.34
3028 4941 2.289010 ACGACGGTGGTAGTAAAAAGGG 60.289 50.000 0.00 0.00 29.65 3.95
3029 4942 2.989166 GACGACGGTGGTAGTAAAAAGG 59.011 50.000 0.00 0.00 31.76 3.11
3030 4943 3.905784 AGACGACGGTGGTAGTAAAAAG 58.094 45.455 0.00 0.00 31.76 2.27
3031 4944 3.305335 GGAGACGACGGTGGTAGTAAAAA 60.305 47.826 0.00 0.00 31.76 1.94
3032 4945 2.228822 GGAGACGACGGTGGTAGTAAAA 59.771 50.000 0.00 0.00 31.76 1.52
3033 4946 1.812571 GGAGACGACGGTGGTAGTAAA 59.187 52.381 0.00 0.00 31.76 2.01
3034 4947 1.453155 GGAGACGACGGTGGTAGTAA 58.547 55.000 0.00 0.00 31.76 2.24
3035 4948 3.159298 GGAGACGACGGTGGTAGTA 57.841 57.895 0.00 0.00 31.76 1.82
3036 4949 3.993535 GGAGACGACGGTGGTAGT 58.006 61.111 0.00 0.00 34.50 2.73
3048 4961 1.669999 TTTAGCCTACCGCCGGAGAC 61.670 60.000 11.71 0.00 38.78 3.36
3049 4962 0.971959 TTTTAGCCTACCGCCGGAGA 60.972 55.000 11.71 0.00 38.78 3.71
3050 4963 0.808847 GTTTTAGCCTACCGCCGGAG 60.809 60.000 11.71 0.00 38.78 4.63
3051 4964 1.218854 GTTTTAGCCTACCGCCGGA 59.781 57.895 11.71 0.00 38.78 5.14
3052 4965 1.078988 TGTTTTAGCCTACCGCCGG 60.079 57.895 0.00 0.00 38.78 6.13
3053 4966 0.108520 TCTGTTTTAGCCTACCGCCG 60.109 55.000 0.00 0.00 38.78 6.46
3054 4967 1.066358 AGTCTGTTTTAGCCTACCGCC 60.066 52.381 0.00 0.00 38.78 6.13
3055 4968 2.381725 AGTCTGTTTTAGCCTACCGC 57.618 50.000 0.00 0.00 37.98 5.68
3056 4969 3.778618 GGTAGTCTGTTTTAGCCTACCG 58.221 50.000 0.00 0.00 45.18 4.02
3058 4971 3.185330 GCGGTAGTCTGTTTTAGCCTAC 58.815 50.000 0.00 0.00 37.19 3.18
3059 4972 2.167075 GGCGGTAGTCTGTTTTAGCCTA 59.833 50.000 0.00 0.00 40.12 3.93
3060 4973 1.066358 GGCGGTAGTCTGTTTTAGCCT 60.066 52.381 0.00 0.00 40.12 4.58
3061 4974 1.338389 TGGCGGTAGTCTGTTTTAGCC 60.338 52.381 0.00 0.00 43.26 3.93
3062 4975 1.730612 GTGGCGGTAGTCTGTTTTAGC 59.269 52.381 0.00 0.00 0.00 3.09
3063 4976 2.993899 CTGTGGCGGTAGTCTGTTTTAG 59.006 50.000 0.00 0.00 0.00 1.85
3064 4977 2.366266 ACTGTGGCGGTAGTCTGTTTTA 59.634 45.455 0.00 0.00 0.00 1.52
3065 4978 1.140252 ACTGTGGCGGTAGTCTGTTTT 59.860 47.619 0.00 0.00 0.00 2.43
3066 4979 0.756903 ACTGTGGCGGTAGTCTGTTT 59.243 50.000 0.00 0.00 0.00 2.83
3067 4980 0.317479 GACTGTGGCGGTAGTCTGTT 59.683 55.000 7.95 0.00 40.06 3.16
3068 4981 0.826256 TGACTGTGGCGGTAGTCTGT 60.826 55.000 14.04 0.00 42.86 3.41
3069 4982 0.317160 TTGACTGTGGCGGTAGTCTG 59.683 55.000 14.04 0.00 42.86 3.51
3070 4983 1.066858 CATTGACTGTGGCGGTAGTCT 60.067 52.381 14.04 0.00 42.86 3.24
3071 4984 1.359848 CATTGACTGTGGCGGTAGTC 58.640 55.000 8.19 8.19 42.77 2.59
3072 4985 0.036388 CCATTGACTGTGGCGGTAGT 60.036 55.000 0.00 0.00 0.00 2.73
3073 4986 2.767536 CCATTGACTGTGGCGGTAG 58.232 57.895 0.00 0.00 0.00 3.18
3079 4992 1.369091 GCTACCGCCATTGACTGTGG 61.369 60.000 0.00 0.00 39.80 4.17
3080 4993 0.673333 TGCTACCGCCATTGACTGTG 60.673 55.000 0.00 0.00 34.43 3.66
3081 4994 0.036164 TTGCTACCGCCATTGACTGT 59.964 50.000 0.00 0.00 34.43 3.55
3082 4995 1.382522 ATTGCTACCGCCATTGACTG 58.617 50.000 0.00 0.00 34.43 3.51
3083 4996 1.745087 CAATTGCTACCGCCATTGACT 59.255 47.619 5.48 0.00 46.57 3.41
3084 4997 1.202290 CCAATTGCTACCGCCATTGAC 60.202 52.381 11.30 0.00 46.57 3.18
3085 4998 1.102154 CCAATTGCTACCGCCATTGA 58.898 50.000 11.30 0.00 46.57 2.57
3086 4999 0.817013 ACCAATTGCTACCGCCATTG 59.183 50.000 0.00 4.65 44.51 2.82
3087 5000 1.102978 GACCAATTGCTACCGCCATT 58.897 50.000 0.00 0.00 32.26 3.16
3088 5001 0.034574 TGACCAATTGCTACCGCCAT 60.035 50.000 0.00 0.00 34.43 4.40
3089 5002 0.250945 TTGACCAATTGCTACCGCCA 60.251 50.000 0.00 0.00 34.43 5.69
3090 5003 0.170339 GTTGACCAATTGCTACCGCC 59.830 55.000 0.00 0.00 34.43 6.13
3091 5004 0.878416 TGTTGACCAATTGCTACCGC 59.122 50.000 0.00 0.00 0.00 5.68
3092 5005 2.151202 AGTGTTGACCAATTGCTACCG 58.849 47.619 0.00 0.00 0.00 4.02
3093 5006 5.699097 TTTAGTGTTGACCAATTGCTACC 57.301 39.130 0.00 0.00 0.00 3.18
3094 5007 5.623673 CGTTTTAGTGTTGACCAATTGCTAC 59.376 40.000 0.00 0.00 0.00 3.58
3095 5008 5.278071 CCGTTTTAGTGTTGACCAATTGCTA 60.278 40.000 0.00 0.00 0.00 3.49
3096 5009 4.499019 CCGTTTTAGTGTTGACCAATTGCT 60.499 41.667 0.00 0.00 0.00 3.91
3097 5010 3.733727 CCGTTTTAGTGTTGACCAATTGC 59.266 43.478 0.00 0.00 0.00 3.56
3098 5011 3.733727 GCCGTTTTAGTGTTGACCAATTG 59.266 43.478 0.00 0.00 0.00 2.32
3099 5012 3.549221 CGCCGTTTTAGTGTTGACCAATT 60.549 43.478 0.00 0.00 0.00 2.32
3100 5013 2.031508 CGCCGTTTTAGTGTTGACCAAT 60.032 45.455 0.00 0.00 0.00 3.16
3101 5014 1.331138 CGCCGTTTTAGTGTTGACCAA 59.669 47.619 0.00 0.00 0.00 3.67
3102 5015 0.938713 CGCCGTTTTAGTGTTGACCA 59.061 50.000 0.00 0.00 0.00 4.02
3103 5016 0.939419 ACGCCGTTTTAGTGTTGACC 59.061 50.000 0.00 0.00 0.00 4.02
3104 5017 2.742954 AACGCCGTTTTAGTGTTGAC 57.257 45.000 0.00 0.00 36.63 3.18
3105 5018 2.791849 GCAAACGCCGTTTTAGTGTTGA 60.792 45.455 13.32 0.00 37.96 3.18
3106 5019 1.515221 GCAAACGCCGTTTTAGTGTTG 59.485 47.619 13.32 1.63 37.96 3.33
3107 5020 1.402613 AGCAAACGCCGTTTTAGTGTT 59.597 42.857 13.32 0.00 39.54 3.32
3108 5021 1.018910 AGCAAACGCCGTTTTAGTGT 58.981 45.000 13.32 0.00 33.10 3.55
3109 5022 2.412325 CCTAGCAAACGCCGTTTTAGTG 60.412 50.000 13.32 3.60 33.10 2.74
3110 5023 1.802365 CCTAGCAAACGCCGTTTTAGT 59.198 47.619 13.32 3.08 33.10 2.24
3111 5024 1.802365 ACCTAGCAAACGCCGTTTTAG 59.198 47.619 13.32 12.73 33.10 1.85
3112 5025 1.881591 ACCTAGCAAACGCCGTTTTA 58.118 45.000 13.32 3.23 33.10 1.52
3113 5026 1.532437 GTACCTAGCAAACGCCGTTTT 59.468 47.619 13.32 2.04 33.10 2.43
3114 5027 1.150827 GTACCTAGCAAACGCCGTTT 58.849 50.000 9.83 9.83 36.05 3.60
3115 5028 0.033781 TGTACCTAGCAAACGCCGTT 59.966 50.000 0.00 0.00 0.00 4.44
3116 5029 0.389426 CTGTACCTAGCAAACGCCGT 60.389 55.000 0.00 0.00 0.00 5.68
3117 5030 0.108992 TCTGTACCTAGCAAACGCCG 60.109 55.000 0.00 0.00 0.00 6.46
3118 5031 1.641577 CTCTGTACCTAGCAAACGCC 58.358 55.000 0.00 0.00 0.00 5.68
3119 5032 1.641577 CCTCTGTACCTAGCAAACGC 58.358 55.000 0.00 0.00 0.00 4.84
3120 5033 1.641577 GCCTCTGTACCTAGCAAACG 58.358 55.000 0.00 0.00 0.00 3.60
3121 5034 1.555533 AGGCCTCTGTACCTAGCAAAC 59.444 52.381 0.00 0.00 33.38 2.93
3122 5035 1.952621 AGGCCTCTGTACCTAGCAAA 58.047 50.000 0.00 0.00 33.38 3.68
3123 5036 2.385803 GTAGGCCTCTGTACCTAGCAA 58.614 52.381 9.68 0.00 39.21 3.91
3124 5037 2.068834 GTAGGCCTCTGTACCTAGCA 57.931 55.000 9.68 0.00 39.21 3.49
3125 5038 1.330234 GGTAGGCCTCTGTACCTAGC 58.670 60.000 9.68 0.00 46.43 3.42
3126 5039 1.606903 CGGTAGGCCTCTGTACCTAG 58.393 60.000 9.68 0.00 39.21 3.02
3127 5040 0.466922 GCGGTAGGCCTCTGTACCTA 60.467 60.000 9.68 0.00 37.19 3.08
3128 5041 1.757340 GCGGTAGGCCTCTGTACCT 60.757 63.158 9.68 0.00 37.19 3.08
3129 5042 0.466922 TAGCGGTAGGCCTCTGTACC 60.467 60.000 9.68 11.08 45.17 3.34
3130 5043 1.618487 ATAGCGGTAGGCCTCTGTAC 58.382 55.000 9.68 0.18 45.17 2.90
3131 5044 2.878935 GCTATAGCGGTAGGCCTCTGTA 60.879 54.545 9.68 1.54 45.17 2.74
3132 5045 1.912417 CTATAGCGGTAGGCCTCTGT 58.088 55.000 9.68 0.08 45.17 3.41
3133 5046 0.528470 GCTATAGCGGTAGGCCTCTG 59.472 60.000 9.68 7.67 45.17 3.35
3134 5047 2.964343 GCTATAGCGGTAGGCCTCT 58.036 57.895 9.68 1.75 45.17 3.69
3145 5058 2.897969 TGGCTGGTAAGGTAGCTATAGC 59.102 50.000 17.33 17.33 39.80 2.97
3146 5059 5.482175 AGATTGGCTGGTAAGGTAGCTATAG 59.518 44.000 0.00 0.00 39.80 1.31
3147 5060 5.403512 AGATTGGCTGGTAAGGTAGCTATA 58.596 41.667 0.00 0.00 39.80 1.31
3148 5061 4.235372 AGATTGGCTGGTAAGGTAGCTAT 58.765 43.478 0.00 0.00 39.80 2.97
3149 5062 3.654273 AGATTGGCTGGTAAGGTAGCTA 58.346 45.455 0.00 0.00 39.80 3.32
3150 5063 2.482494 AGATTGGCTGGTAAGGTAGCT 58.518 47.619 0.00 0.00 39.80 3.32
3151 5064 3.283259 AAGATTGGCTGGTAAGGTAGC 57.717 47.619 0.00 0.00 39.17 3.58
3152 5065 7.881775 AATAAAAGATTGGCTGGTAAGGTAG 57.118 36.000 0.00 0.00 0.00 3.18
3153 5066 8.658840 AAAATAAAAGATTGGCTGGTAAGGTA 57.341 30.769 0.00 0.00 0.00 3.08
3154 5067 7.553504 AAAATAAAAGATTGGCTGGTAAGGT 57.446 32.000 0.00 0.00 0.00 3.50
3159 5072 9.435688 GACAAATAAAATAAAAGATTGGCTGGT 57.564 29.630 0.00 0.00 0.00 4.00
3160 5073 8.594687 CGACAAATAAAATAAAAGATTGGCTGG 58.405 33.333 0.00 0.00 0.00 4.85
3161 5074 9.139174 ACGACAAATAAAATAAAAGATTGGCTG 57.861 29.630 0.00 0.00 0.00 4.85
3162 5075 9.139174 CACGACAAATAAAATAAAAGATTGGCT 57.861 29.630 0.00 0.00 0.00 4.75
3163 5076 7.897800 GCACGACAAATAAAATAAAAGATTGGC 59.102 33.333 0.00 0.00 0.00 4.52
3164 5077 8.920665 TGCACGACAAATAAAATAAAAGATTGG 58.079 29.630 0.00 0.00 0.00 3.16
3167 5080 9.086336 CCATGCACGACAAATAAAATAAAAGAT 57.914 29.630 0.00 0.00 0.00 2.40
3168 5081 7.062839 GCCATGCACGACAAATAAAATAAAAGA 59.937 33.333 0.00 0.00 0.00 2.52
3169 5082 7.063308 AGCCATGCACGACAAATAAAATAAAAG 59.937 33.333 0.00 0.00 0.00 2.27
3170 5083 6.870965 AGCCATGCACGACAAATAAAATAAAA 59.129 30.769 0.00 0.00 0.00 1.52
3171 5084 6.309980 CAGCCATGCACGACAAATAAAATAAA 59.690 34.615 0.00 0.00 0.00 1.40
3172 5085 5.804473 CAGCCATGCACGACAAATAAAATAA 59.196 36.000 0.00 0.00 0.00 1.40
3173 5086 5.339177 CAGCCATGCACGACAAATAAAATA 58.661 37.500 0.00 0.00 0.00 1.40
3174 5087 4.175516 CAGCCATGCACGACAAATAAAAT 58.824 39.130 0.00 0.00 0.00 1.82
3175 5088 3.573598 CAGCCATGCACGACAAATAAAA 58.426 40.909 0.00 0.00 0.00 1.52
3176 5089 3.214697 CAGCCATGCACGACAAATAAA 57.785 42.857 0.00 0.00 0.00 1.40
3177 5090 2.917701 CAGCCATGCACGACAAATAA 57.082 45.000 0.00 0.00 0.00 1.40
3189 5102 0.031585 CCCAAATCGATGCAGCCATG 59.968 55.000 0.00 0.00 0.00 3.66
3190 5103 0.396139 ACCCAAATCGATGCAGCCAT 60.396 50.000 0.00 0.00 0.00 4.40
3191 5104 1.001020 ACCCAAATCGATGCAGCCA 60.001 52.632 0.00 0.00 0.00 4.75
3192 5105 1.031571 TGACCCAAATCGATGCAGCC 61.032 55.000 0.00 0.00 0.00 4.85
3193 5106 1.027357 ATGACCCAAATCGATGCAGC 58.973 50.000 0.00 0.00 0.00 5.25
3194 5107 3.003689 GGTTATGACCCAAATCGATGCAG 59.996 47.826 0.00 0.00 40.25 4.41
3195 5108 2.948979 GGTTATGACCCAAATCGATGCA 59.051 45.455 0.00 0.00 40.25 3.96
3196 5109 3.626028 GGTTATGACCCAAATCGATGC 57.374 47.619 0.00 0.00 40.25 3.91
3207 5120 1.834263 AGTGGCAGAGAGGTTATGACC 59.166 52.381 0.00 0.00 46.92 4.02
3208 5121 2.763448 AGAGTGGCAGAGAGGTTATGAC 59.237 50.000 0.00 0.00 0.00 3.06
3209 5122 3.107402 AGAGTGGCAGAGAGGTTATGA 57.893 47.619 0.00 0.00 0.00 2.15
3210 5123 3.902881 AAGAGTGGCAGAGAGGTTATG 57.097 47.619 0.00 0.00 0.00 1.90
3211 5124 5.627968 GCTTAAAGAGTGGCAGAGAGGTTAT 60.628 44.000 0.00 0.00 0.00 1.89
3212 5125 4.322801 GCTTAAAGAGTGGCAGAGAGGTTA 60.323 45.833 0.00 0.00 0.00 2.85
3213 5126 3.558109 GCTTAAAGAGTGGCAGAGAGGTT 60.558 47.826 0.00 0.00 0.00 3.50
3214 5127 2.027653 GCTTAAAGAGTGGCAGAGAGGT 60.028 50.000 0.00 0.00 0.00 3.85
3215 5128 2.027745 TGCTTAAAGAGTGGCAGAGAGG 60.028 50.000 0.00 0.00 0.00 3.69
3216 5129 2.999355 GTGCTTAAAGAGTGGCAGAGAG 59.001 50.000 0.00 0.00 35.29 3.20
3217 5130 2.634940 AGTGCTTAAAGAGTGGCAGAGA 59.365 45.455 0.00 0.00 35.29 3.10
3218 5131 2.999355 GAGTGCTTAAAGAGTGGCAGAG 59.001 50.000 0.00 0.00 35.29 3.35
3219 5132 2.634940 AGAGTGCTTAAAGAGTGGCAGA 59.365 45.455 0.00 0.00 35.29 4.26
3220 5133 3.051081 AGAGTGCTTAAAGAGTGGCAG 57.949 47.619 0.00 0.00 35.29 4.85
3221 5134 3.578716 ACTAGAGTGCTTAAAGAGTGGCA 59.421 43.478 0.00 0.00 0.00 4.92
3222 5135 3.929610 CACTAGAGTGCTTAAAGAGTGGC 59.070 47.826 0.00 0.00 39.39 5.01
3223 5136 5.392767 TCACTAGAGTGCTTAAAGAGTGG 57.607 43.478 4.72 0.00 45.25 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.