Multiple sequence alignment - TraesCS2B01G482500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G482500 chr2B 100.000 1711 0 0 1 1711 680220363 680222073 0.000000e+00 3160.0
1 TraesCS2B01G482500 chr2B 80.488 533 69 21 865 1374 680408840 680409360 2.090000e-100 375.0
2 TraesCS2B01G482500 chr2B 78.034 651 83 35 861 1466 680063174 680063809 2.730000e-94 355.0
3 TraesCS2B01G482500 chr2B 100.000 164 0 0 2071 2234 680222433 680222596 1.000000e-78 303.0
4 TraesCS2B01G482500 chr2B 88.679 53 5 1 433 484 32946053 32946001 1.850000e-06 63.9
5 TraesCS2B01G482500 chr2A 89.768 948 43 17 735 1637 707039951 707040889 0.000000e+00 1164.0
6 TraesCS2B01G482500 chr2A 89.103 312 28 5 143 450 707039126 707039435 1.250000e-102 383.0
7 TraesCS2B01G482500 chr2A 78.582 677 74 40 865 1497 706919232 706919881 4.500000e-102 381.0
8 TraesCS2B01G482500 chr2A 80.663 543 62 21 862 1374 707168569 707169098 4.500000e-102 381.0
9 TraesCS2B01G482500 chr2A 90.547 201 9 5 553 743 707039538 707039738 7.920000e-65 257.0
10 TraesCS2B01G482500 chr2A 93.023 43 3 0 448 490 1525979 1525937 1.850000e-06 63.9
11 TraesCS2B01G482500 chr2D 88.843 977 50 22 550 1484 567568543 567569502 0.000000e+00 1146.0
12 TraesCS2B01G482500 chr2D 78.585 537 61 28 865 1374 567641909 567642418 2.790000e-79 305.0
13 TraesCS2B01G482500 chr2D 77.778 549 52 33 865 1373 567051460 567051978 7.860000e-70 274.0
14 TraesCS2B01G482500 chr2D 83.784 185 16 4 1478 1649 567571569 567571386 1.780000e-36 163.0
15 TraesCS2B01G482500 chr2D 89.076 119 13 0 541 659 567648489 567648607 4.970000e-32 148.0
16 TraesCS2B01G482500 chr3D 82.927 246 33 6 996 1238 591103408 591103169 1.740000e-51 213.0
17 TraesCS2B01G482500 chrUn 82.470 251 32 10 996 1238 155033224 155033470 2.250000e-50 209.0
18 TraesCS2B01G482500 chr3B 82.470 251 32 10 996 1238 792434455 792434209 2.250000e-50 209.0
19 TraesCS2B01G482500 chr3B 82.540 252 30 12 996 1238 793395756 793396002 2.250000e-50 209.0
20 TraesCS2B01G482500 chr6B 97.619 42 1 0 448 489 63225351 63225310 3.080000e-09 73.1
21 TraesCS2B01G482500 chr6B 95.238 42 2 0 448 489 63256355 63256314 1.430000e-07 67.6
22 TraesCS2B01G482500 chr7B 93.617 47 2 1 439 484 524905673 524905719 3.980000e-08 69.4
23 TraesCS2B01G482500 chr4B 89.474 57 2 2 437 489 95869547 95869603 3.980000e-08 69.4
24 TraesCS2B01G482500 chr5B 95.238 42 2 0 448 489 42938929 42938970 1.430000e-07 67.6
25 TraesCS2B01G482500 chr1A 93.333 45 2 1 441 484 10158702 10158746 5.150000e-07 65.8
26 TraesCS2B01G482500 chr6A 88.462 52 3 3 449 500 378166948 378166900 2.400000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G482500 chr2B 680220363 680222596 2233 False 1731.500000 3160 100.000 1 2234 2 chr2B.!!$F3 2233
1 TraesCS2B01G482500 chr2B 680408840 680409360 520 False 375.000000 375 80.488 865 1374 1 chr2B.!!$F2 509
2 TraesCS2B01G482500 chr2B 680063174 680063809 635 False 355.000000 355 78.034 861 1466 1 chr2B.!!$F1 605
3 TraesCS2B01G482500 chr2A 707039126 707040889 1763 False 601.333333 1164 89.806 143 1637 3 chr2A.!!$F3 1494
4 TraesCS2B01G482500 chr2A 706919232 706919881 649 False 381.000000 381 78.582 865 1497 1 chr2A.!!$F1 632
5 TraesCS2B01G482500 chr2A 707168569 707169098 529 False 381.000000 381 80.663 862 1374 1 chr2A.!!$F2 512
6 TraesCS2B01G482500 chr2D 567568543 567569502 959 False 1146.000000 1146 88.843 550 1484 1 chr2D.!!$F2 934
7 TraesCS2B01G482500 chr2D 567641909 567642418 509 False 305.000000 305 78.585 865 1374 1 chr2D.!!$F3 509
8 TraesCS2B01G482500 chr2D 567051460 567051978 518 False 274.000000 274 77.778 865 1373 1 chr2D.!!$F1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.035725 GCGGGTAGCCTAACAGGTTT 60.036 55.0 9.73 0.0 37.8 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 2548 0.040157 CGAATTGGCCCGCATATGTG 60.04 55.0 9.39 9.39 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.292159 AAAAACCCGACGGCAGGC 61.292 61.111 8.86 0.00 0.00 4.85
53 54 4.326766 GCGAGCAGCCAAAACGCA 62.327 61.111 0.00 0.00 46.75 5.24
54 55 2.127118 CGAGCAGCCAAAACGCAG 60.127 61.111 0.00 0.00 0.00 5.18
55 56 2.429739 GAGCAGCCAAAACGCAGC 60.430 61.111 0.00 0.00 41.22 5.25
56 57 2.908940 AGCAGCCAAAACGCAGCT 60.909 55.556 0.00 0.00 45.62 4.24
57 58 2.953821 GCAGCCAAAACGCAGCTA 59.046 55.556 0.00 0.00 38.17 3.32
58 59 1.285641 GCAGCCAAAACGCAGCTAA 59.714 52.632 0.00 0.00 38.17 3.09
59 60 0.730494 GCAGCCAAAACGCAGCTAAG 60.730 55.000 0.00 0.00 38.17 2.18
60 61 0.109597 CAGCCAAAACGCAGCTAAGG 60.110 55.000 0.00 0.00 34.38 2.69
61 62 0.250727 AGCCAAAACGCAGCTAAGGA 60.251 50.000 0.00 0.00 34.38 3.36
62 63 0.596082 GCCAAAACGCAGCTAAGGAA 59.404 50.000 0.00 0.00 0.00 3.36
63 64 1.000717 GCCAAAACGCAGCTAAGGAAA 60.001 47.619 0.00 0.00 0.00 3.13
64 65 2.352715 GCCAAAACGCAGCTAAGGAAAT 60.353 45.455 0.00 0.00 0.00 2.17
65 66 3.244976 CCAAAACGCAGCTAAGGAAATG 58.755 45.455 0.00 0.00 0.00 2.32
66 67 3.244976 CAAAACGCAGCTAAGGAAATGG 58.755 45.455 0.00 0.00 0.00 3.16
67 68 2.489938 AACGCAGCTAAGGAAATGGA 57.510 45.000 0.00 0.00 0.00 3.41
68 69 2.717639 ACGCAGCTAAGGAAATGGAT 57.282 45.000 0.00 0.00 0.00 3.41
69 70 2.565841 ACGCAGCTAAGGAAATGGATC 58.434 47.619 0.00 0.00 0.00 3.36
70 71 1.528586 CGCAGCTAAGGAAATGGATCG 59.471 52.381 0.00 0.00 0.00 3.69
71 72 2.803133 CGCAGCTAAGGAAATGGATCGA 60.803 50.000 0.00 0.00 0.00 3.59
72 73 2.805099 GCAGCTAAGGAAATGGATCGAG 59.195 50.000 0.00 0.00 0.00 4.04
73 74 2.805099 CAGCTAAGGAAATGGATCGAGC 59.195 50.000 0.00 0.00 0.00 5.03
74 75 1.795286 GCTAAGGAAATGGATCGAGCG 59.205 52.381 0.00 0.00 0.00 5.03
75 76 2.408050 CTAAGGAAATGGATCGAGCGG 58.592 52.381 0.00 0.00 0.00 5.52
76 77 0.815615 AAGGAAATGGATCGAGCGGC 60.816 55.000 0.00 0.00 0.00 6.53
77 78 2.254464 GGAAATGGATCGAGCGGCC 61.254 63.158 0.00 0.00 0.00 6.13
78 79 2.203209 AAATGGATCGAGCGGCCC 60.203 61.111 0.00 0.00 0.00 5.80
79 80 2.940890 GAAATGGATCGAGCGGCCCA 62.941 60.000 0.00 0.00 0.00 5.36
80 81 2.550699 AAATGGATCGAGCGGCCCAA 62.551 55.000 0.00 0.00 31.77 4.12
81 82 3.757248 ATGGATCGAGCGGCCCAAC 62.757 63.158 0.00 0.00 31.77 3.77
83 84 4.508128 GATCGAGCGGCCCAACGA 62.508 66.667 13.52 13.52 39.01 3.85
84 85 4.514577 ATCGAGCGGCCCAACGAG 62.515 66.667 15.66 0.00 38.12 4.18
94 95 3.736100 CCAACGAGCATGGCGCAA 61.736 61.111 10.83 0.00 46.13 4.85
95 96 2.202388 CAACGAGCATGGCGCAAG 60.202 61.111 10.83 0.00 46.13 4.01
129 130 3.306379 GCGGGTAGCCTAACAGGT 58.694 61.111 9.73 0.00 37.80 4.00
130 131 1.600638 GCGGGTAGCCTAACAGGTT 59.399 57.895 9.73 0.00 37.80 3.50
131 132 0.035725 GCGGGTAGCCTAACAGGTTT 60.036 55.000 9.73 0.00 37.80 3.27
132 133 1.612462 GCGGGTAGCCTAACAGGTTTT 60.612 52.381 9.73 0.00 37.80 2.43
133 134 2.353323 CGGGTAGCCTAACAGGTTTTC 58.647 52.381 9.73 0.00 37.80 2.29
134 135 2.027469 CGGGTAGCCTAACAGGTTTTCT 60.027 50.000 9.73 0.00 37.80 2.52
135 136 3.196254 CGGGTAGCCTAACAGGTTTTCTA 59.804 47.826 9.73 0.00 37.80 2.10
136 137 4.141779 CGGGTAGCCTAACAGGTTTTCTAT 60.142 45.833 9.73 0.00 37.80 1.98
137 138 5.123936 GGGTAGCCTAACAGGTTTTCTATG 58.876 45.833 2.95 0.00 37.80 2.23
138 139 5.338953 GGGTAGCCTAACAGGTTTTCTATGT 60.339 44.000 2.95 0.00 37.80 2.29
139 140 6.178324 GGTAGCCTAACAGGTTTTCTATGTT 58.822 40.000 0.00 0.00 37.80 2.71
140 141 6.315642 GGTAGCCTAACAGGTTTTCTATGTTC 59.684 42.308 0.00 0.00 37.80 3.18
141 142 5.254115 AGCCTAACAGGTTTTCTATGTTCC 58.746 41.667 0.00 0.00 37.80 3.62
165 166 6.772716 CCACTAGGTAATTGCTCCATTACAAT 59.227 38.462 12.91 0.00 38.11 2.71
166 167 7.285401 CCACTAGGTAATTGCTCCATTACAATT 59.715 37.037 12.91 6.26 45.73 2.32
196 197 6.522855 CACACATATTTTGTACACAATCACCG 59.477 38.462 10.44 2.47 36.57 4.94
203 204 6.862711 TTTGTACACAATCACCGTGATTTA 57.137 33.333 21.72 11.03 44.03 1.40
205 206 4.691685 TGTACACAATCACCGTGATTTACC 59.308 41.667 21.72 10.32 44.03 2.85
209 210 2.038387 ATCACCGTGATTTACCTGCC 57.962 50.000 8.28 0.00 32.13 4.85
244 245 9.828852 GTTAATGTGATTACGTACCAAAAATGA 57.171 29.630 0.00 0.00 0.00 2.57
268 270 6.610075 ACTTTAATTGCCACTTGGATCAAT 57.390 33.333 0.00 0.00 37.39 2.57
276 278 8.995027 ATTGCCACTTGGATCAATACTTATTA 57.005 30.769 0.00 0.00 37.39 0.98
277 279 8.450578 TTGCCACTTGGATCAATACTTATTAG 57.549 34.615 0.00 0.00 37.39 1.73
279 281 8.052748 TGCCACTTGGATCAATACTTATTAGTT 58.947 33.333 0.00 0.00 37.39 2.24
329 332 5.569413 CCAATAAAACGTGATAGTTGAGGC 58.431 41.667 0.00 0.00 34.14 4.70
340 343 3.157922 GTTGAGGCGGTTTTCAACG 57.842 52.632 1.48 0.00 42.39 4.10
343 346 1.600023 TGAGGCGGTTTTCAACGAAT 58.400 45.000 0.00 0.00 0.00 3.34
351 354 4.215965 CGGTTTTCAACGAATACTGGTTG 58.784 43.478 0.00 0.00 43.69 3.77
393 398 2.407340 AGGGGATGTAGGATGGAGAC 57.593 55.000 0.00 0.00 0.00 3.36
431 436 8.657074 AAAAAGAAGCAAAACATAACCTTACC 57.343 30.769 0.00 0.00 0.00 2.85
463 468 8.985315 TTTAAGTATATACTTCCTCCGTCTCA 57.015 34.615 27.40 7.24 44.77 3.27
464 469 9.584008 TTTAAGTATATACTTCCTCCGTCTCAT 57.416 33.333 27.40 5.88 44.77 2.90
467 472 9.756571 AAGTATATACTTCCTCCGTCTCATAAT 57.243 33.333 20.27 0.00 42.52 1.28
473 478 9.976776 ATACTTCCTCCGTCTCATAATATAAGA 57.023 33.333 0.00 0.00 0.00 2.10
474 479 8.707796 ACTTCCTCCGTCTCATAATATAAGAA 57.292 34.615 0.00 0.00 0.00 2.52
475 480 9.315363 ACTTCCTCCGTCTCATAATATAAGAAT 57.685 33.333 0.00 0.00 0.00 2.40
476 481 9.579768 CTTCCTCCGTCTCATAATATAAGAATG 57.420 37.037 0.00 0.00 0.00 2.67
477 482 8.651589 TCCTCCGTCTCATAATATAAGAATGT 57.348 34.615 0.00 0.00 0.00 2.71
478 483 9.090103 TCCTCCGTCTCATAATATAAGAATGTT 57.910 33.333 0.00 0.00 0.00 2.71
479 484 9.712305 CCTCCGTCTCATAATATAAGAATGTTT 57.288 33.333 0.00 0.00 0.00 2.83
492 497 7.681939 ATAAGAATGTTTTTGAAGCTACGGA 57.318 32.000 0.00 0.00 0.00 4.69
493 498 5.613358 AGAATGTTTTTGAAGCTACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
494 499 4.455877 AGAATGTTTTTGAAGCTACGGAGG 59.544 41.667 0.00 0.00 0.00 4.30
495 500 2.500229 TGTTTTTGAAGCTACGGAGGG 58.500 47.619 0.00 0.00 0.00 4.30
496 501 2.105134 TGTTTTTGAAGCTACGGAGGGA 59.895 45.455 0.00 0.00 0.00 4.20
497 502 2.742589 GTTTTTGAAGCTACGGAGGGAG 59.257 50.000 0.00 0.00 0.00 4.30
502 507 3.484407 TGAAGCTACGGAGGGAGTATAC 58.516 50.000 0.00 0.00 0.00 1.47
512 517 4.067192 GGAGGGAGTATACGAGAAGAGAC 58.933 52.174 0.00 0.00 0.00 3.36
521 526 2.980568 ACGAGAAGAGACGAGAGATGT 58.019 47.619 0.00 0.00 0.00 3.06
527 532 4.394920 AGAAGAGACGAGAGATGTGAGAAC 59.605 45.833 0.00 0.00 0.00 3.01
535 540 7.490725 AGACGAGAGATGTGAGAACATAAATTG 59.509 37.037 0.00 0.00 0.00 2.32
540 545 7.338703 AGAGATGTGAGAACATAAATTGCACAT 59.661 33.333 0.00 0.00 45.08 3.21
542 547 5.953183 TGTGAGAACATAAATTGCACATCC 58.047 37.500 0.00 0.00 30.73 3.51
543 548 5.030295 GTGAGAACATAAATTGCACATCCG 58.970 41.667 0.00 0.00 0.00 4.18
544 549 4.940654 TGAGAACATAAATTGCACATCCGA 59.059 37.500 0.00 0.00 0.00 4.55
546 551 4.943705 AGAACATAAATTGCACATCCGAGT 59.056 37.500 0.00 0.00 0.00 4.18
547 552 4.621068 ACATAAATTGCACATCCGAGTG 57.379 40.909 0.00 0.00 42.37 3.51
557 614 0.463204 CATCCGAGTGCCTGTCAGAT 59.537 55.000 0.00 0.00 0.00 2.90
682 739 1.537638 CAGATCCATAGTCTCCGGTCG 59.462 57.143 0.00 0.00 0.00 4.79
683 740 0.882474 GATCCATAGTCTCCGGTCGG 59.118 60.000 0.00 2.52 0.00 4.79
684 741 0.539901 ATCCATAGTCTCCGGTCGGG 60.540 60.000 9.68 0.00 35.59 5.14
685 742 1.152819 CCATAGTCTCCGGTCGGGA 60.153 63.158 9.68 4.68 44.68 5.14
687 744 1.108776 CATAGTCTCCGGTCGGGAAA 58.891 55.000 9.68 0.00 46.61 3.13
688 745 1.479323 CATAGTCTCCGGTCGGGAAAA 59.521 52.381 9.68 0.00 46.61 2.29
690 747 0.830866 AGTCTCCGGTCGGGAAAAGT 60.831 55.000 9.68 0.00 46.61 2.66
691 748 0.890683 GTCTCCGGTCGGGAAAAGTA 59.109 55.000 9.68 0.00 46.61 2.24
692 749 1.479730 GTCTCCGGTCGGGAAAAGTAT 59.520 52.381 9.68 0.00 46.61 2.12
897 1212 3.397482 CAGCTCGCCTATAAGAAGCAAT 58.603 45.455 0.00 0.00 0.00 3.56
921 1236 0.902531 ACGAAGCTAAGCCTAAGCCA 59.097 50.000 0.00 0.00 41.02 4.75
923 1238 1.405526 CGAAGCTAAGCCTAAGCCACA 60.406 52.381 0.00 0.00 41.02 4.17
924 1239 2.010497 GAAGCTAAGCCTAAGCCACAC 58.990 52.381 0.00 0.00 41.02 3.82
925 1240 0.984230 AGCTAAGCCTAAGCCACACA 59.016 50.000 0.00 0.00 41.02 3.72
927 1242 1.468914 GCTAAGCCTAAGCCACACAAC 59.531 52.381 0.00 0.00 41.25 3.32
929 1244 2.292828 AAGCCTAAGCCACACAACAT 57.707 45.000 0.00 0.00 41.25 2.71
941 1269 5.104776 AGCCACACAACATACTATCACTCAT 60.105 40.000 0.00 0.00 0.00 2.90
950 1278 5.598417 ACATACTATCACTCATACACAGCCA 59.402 40.000 0.00 0.00 0.00 4.75
986 1361 8.270137 ACTCTCCTCAGTAGTATTATCAGAGA 57.730 38.462 0.00 0.00 0.00 3.10
991 1366 6.370442 CCTCAGTAGTATTATCAGAGACTCCG 59.630 46.154 0.00 0.00 0.00 4.63
1071 1446 2.427245 CGACGGGAGGGAGCTGAAT 61.427 63.158 0.00 0.00 0.00 2.57
1279 1676 5.277538 GCTAACATACATACAAGCTTCAGCC 60.278 44.000 0.00 0.00 43.38 4.85
1306 1725 7.483580 ACTTGTGGCTTAAGACTTCTATAGT 57.516 36.000 10.33 2.07 40.71 2.12
1348 1767 0.889186 ACCGGCTTTTCGCTCATGTT 60.889 50.000 0.00 0.00 39.13 2.71
1378 1798 6.583912 GCTTAATGAGCGTTGTATCTGTAA 57.416 37.500 0.00 0.00 42.46 2.41
1437 1873 6.661669 ACATGCATCATCAACGTAATACATG 58.338 36.000 0.00 0.00 37.70 3.21
1451 1887 8.236084 ACGTAATACATGTTACTTTGTCAGTC 57.764 34.615 2.30 0.00 36.88 3.51
1524 1965 4.201705 CCGACGTACTACTTCTTGACTCTC 60.202 50.000 0.00 0.00 0.00 3.20
1544 1985 6.148480 ACTCTCATCATAAACTCACAAGTTGC 59.852 38.462 1.81 0.00 45.07 4.17
1591 2032 7.279981 TCGAACATAGATTTGTATGAAAGTGGG 59.720 37.037 2.09 0.00 34.88 4.61
1622 2063 4.545208 TGGTTTATGTGGAAGTCGATCA 57.455 40.909 0.00 0.00 0.00 2.92
1637 2078 9.862371 GGAAGTCGATCATACATAGATTTGTAT 57.138 33.333 0.00 0.00 42.20 2.29
1663 2104 8.838452 GACAATGAGATTTTGTCTTGATCATC 57.162 34.615 0.00 0.00 46.03 2.92
1664 2105 8.577048 ACAATGAGATTTTGTCTTGATCATCT 57.423 30.769 0.00 0.00 37.29 2.90
1665 2106 9.021807 ACAATGAGATTTTGTCTTGATCATCTT 57.978 29.630 0.00 0.00 37.29 2.40
1666 2107 9.290483 CAATGAGATTTTGTCTTGATCATCTTG 57.710 33.333 0.00 0.00 37.29 3.02
1667 2108 7.991084 TGAGATTTTGTCTTGATCATCTTGT 57.009 32.000 0.00 0.00 37.29 3.16
1668 2109 8.037382 TGAGATTTTGTCTTGATCATCTTGTC 57.963 34.615 0.00 0.00 37.29 3.18
1669 2110 7.120285 TGAGATTTTGTCTTGATCATCTTGTCC 59.880 37.037 0.00 0.00 37.29 4.02
1670 2111 7.173722 AGATTTTGTCTTGATCATCTTGTCCT 58.826 34.615 0.00 0.00 31.47 3.85
1671 2112 8.324306 AGATTTTGTCTTGATCATCTTGTCCTA 58.676 33.333 0.00 0.00 31.47 2.94
1672 2113 9.118300 GATTTTGTCTTGATCATCTTGTCCTAT 57.882 33.333 0.00 0.00 0.00 2.57
1674 2115 9.958180 TTTTGTCTTGATCATCTTGTCCTATAA 57.042 29.630 0.00 0.00 0.00 0.98
1675 2116 9.605275 TTTGTCTTGATCATCTTGTCCTATAAG 57.395 33.333 0.00 0.00 0.00 1.73
1676 2117 8.311395 TGTCTTGATCATCTTGTCCTATAAGT 57.689 34.615 0.00 0.00 0.00 2.24
1677 2118 8.762645 TGTCTTGATCATCTTGTCCTATAAGTT 58.237 33.333 0.00 0.00 0.00 2.66
1682 2123 9.379770 TGATCATCTTGTCCTATAAGTTATGGA 57.620 33.333 7.76 8.44 0.00 3.41
1683 2124 9.646427 GATCATCTTGTCCTATAAGTTATGGAC 57.354 37.037 23.74 23.74 46.53 4.02
1684 2125 8.783660 TCATCTTGTCCTATAAGTTATGGACT 57.216 34.615 27.01 15.22 46.50 3.85
1685 2126 8.861086 TCATCTTGTCCTATAAGTTATGGACTC 58.139 37.037 27.01 14.41 46.50 3.36
1686 2127 7.598759 TCTTGTCCTATAAGTTATGGACTCC 57.401 40.000 27.01 13.97 46.50 3.85
1687 2128 7.363031 TCTTGTCCTATAAGTTATGGACTCCT 58.637 38.462 27.01 1.55 46.50 3.69
1688 2129 7.506261 TCTTGTCCTATAAGTTATGGACTCCTC 59.494 40.741 27.01 13.53 46.50 3.71
1689 2130 6.075984 TGTCCTATAAGTTATGGACTCCTCC 58.924 44.000 27.01 13.10 46.50 4.30
1690 2131 6.125860 TGTCCTATAAGTTATGGACTCCTCCT 60.126 42.308 27.01 0.04 46.50 3.69
1691 2132 6.783482 GTCCTATAAGTTATGGACTCCTCCTT 59.217 42.308 23.47 0.00 43.91 3.36
1692 2133 7.290481 GTCCTATAAGTTATGGACTCCTCCTTT 59.710 40.741 23.47 0.00 43.91 3.11
1693 2134 7.290248 TCCTATAAGTTATGGACTCCTCCTTTG 59.710 40.741 7.76 0.00 37.72 2.77
1694 2135 7.290248 CCTATAAGTTATGGACTCCTCCTTTGA 59.710 40.741 7.76 0.00 37.72 2.69
1695 2136 7.698163 ATAAGTTATGGACTCCTCCTTTGAT 57.302 36.000 0.00 0.00 37.72 2.57
1696 2137 8.798975 ATAAGTTATGGACTCCTCCTTTGATA 57.201 34.615 0.00 0.00 37.72 2.15
1697 2138 6.739331 AGTTATGGACTCCTCCTTTGATAG 57.261 41.667 0.00 0.00 37.48 2.08
1698 2139 5.604650 AGTTATGGACTCCTCCTTTGATAGG 59.395 44.000 0.00 0.00 38.80 2.57
1699 2140 6.585383 AGTTATGGACTCCTCCTTTGATAGGA 60.585 42.308 0.00 0.00 42.27 2.94
1700 2141 8.031158 AGTTATGGACTCCTCCTTTGATAGGAA 61.031 40.741 0.00 0.00 43.29 3.36
2087 2528 4.695560 GGGAAGTTGGTGACTCCG 57.304 61.111 0.00 0.00 37.72 4.63
2088 2529 2.055299 GGGAAGTTGGTGACTCCGA 58.945 57.895 0.00 0.00 37.72 4.55
2095 2536 2.344025 GTTGGTGACTCCGACATAACC 58.656 52.381 8.77 0.00 47.00 2.85
2096 2537 0.899720 TGGTGACTCCGACATAACCC 59.100 55.000 0.00 0.00 39.52 4.11
2097 2538 0.177373 GGTGACTCCGACATAACCCC 59.823 60.000 0.00 0.00 0.00 4.95
2098 2539 0.177373 GTGACTCCGACATAACCCCC 59.823 60.000 0.00 0.00 0.00 5.40
2099 2540 0.042131 TGACTCCGACATAACCCCCT 59.958 55.000 0.00 0.00 0.00 4.79
2100 2541 0.751452 GACTCCGACATAACCCCCTC 59.249 60.000 0.00 0.00 0.00 4.30
2101 2542 1.041447 ACTCCGACATAACCCCCTCG 61.041 60.000 0.00 0.00 0.00 4.63
2102 2543 1.000739 TCCGACATAACCCCCTCGT 59.999 57.895 0.00 0.00 0.00 4.18
2103 2544 0.258484 TCCGACATAACCCCCTCGTA 59.742 55.000 0.00 0.00 0.00 3.43
2104 2545 1.133388 TCCGACATAACCCCCTCGTAT 60.133 52.381 0.00 0.00 0.00 3.06
2105 2546 1.271656 CCGACATAACCCCCTCGTATC 59.728 57.143 0.00 0.00 0.00 2.24
2106 2547 1.068748 CGACATAACCCCCTCGTATCG 60.069 57.143 0.00 0.00 0.00 2.92
2107 2548 0.677842 ACATAACCCCCTCGTATCGC 59.322 55.000 0.00 0.00 0.00 4.58
2108 2549 0.677288 CATAACCCCCTCGTATCGCA 59.323 55.000 0.00 0.00 0.00 5.10
2109 2550 0.677842 ATAACCCCCTCGTATCGCAC 59.322 55.000 0.00 0.00 0.00 5.34
2110 2551 0.683828 TAACCCCCTCGTATCGCACA 60.684 55.000 0.00 0.00 0.00 4.57
2111 2552 1.335132 AACCCCCTCGTATCGCACAT 61.335 55.000 0.00 0.00 0.00 3.21
2112 2553 0.468585 ACCCCCTCGTATCGCACATA 60.469 55.000 0.00 0.00 0.00 2.29
2113 2554 0.895530 CCCCCTCGTATCGCACATAT 59.104 55.000 0.00 0.00 0.00 1.78
2114 2555 1.404181 CCCCCTCGTATCGCACATATG 60.404 57.143 0.00 0.00 0.00 1.78
2123 2564 3.447040 GCACATATGCGGGCCAAT 58.553 55.556 4.39 0.00 43.33 3.16
2124 2565 1.741525 GCACATATGCGGGCCAATT 59.258 52.632 4.39 0.00 43.33 2.32
2125 2566 0.318955 GCACATATGCGGGCCAATTC 60.319 55.000 4.39 0.00 43.33 2.17
2126 2567 0.040157 CACATATGCGGGCCAATTCG 60.040 55.000 4.39 0.00 0.00 3.34
2127 2568 1.172180 ACATATGCGGGCCAATTCGG 61.172 55.000 4.39 0.00 38.11 4.30
2128 2569 1.603455 ATATGCGGGCCAATTCGGG 60.603 57.895 4.39 0.00 34.06 5.14
2135 2576 3.274067 GCCAATTCGGGCGAAAGT 58.726 55.556 0.00 0.00 45.40 2.66
2136 2577 1.154035 GCCAATTCGGGCGAAAGTG 60.154 57.895 0.00 0.00 45.40 3.16
2137 2578 1.862602 GCCAATTCGGGCGAAAGTGT 61.863 55.000 0.00 0.00 45.40 3.55
2138 2579 1.444836 CCAATTCGGGCGAAAGTGTA 58.555 50.000 0.00 0.00 37.69 2.90
2139 2580 1.129811 CCAATTCGGGCGAAAGTGTAC 59.870 52.381 0.00 0.00 37.69 2.90
2140 2581 1.129811 CAATTCGGGCGAAAGTGTACC 59.870 52.381 0.00 0.00 37.69 3.34
2141 2582 0.322322 ATTCGGGCGAAAGTGTACCA 59.678 50.000 0.00 0.00 37.69 3.25
2142 2583 0.600782 TTCGGGCGAAAGTGTACCAC 60.601 55.000 0.00 0.00 34.10 4.16
2143 2584 2.377310 CGGGCGAAAGTGTACCACG 61.377 63.158 0.00 0.00 39.64 4.94
2144 2585 1.301165 GGGCGAAAGTGTACCACGT 60.301 57.895 0.00 0.00 39.64 4.49
2145 2586 1.562575 GGGCGAAAGTGTACCACGTG 61.563 60.000 9.08 9.08 39.64 4.49
2146 2587 0.877213 GGCGAAAGTGTACCACGTGT 60.877 55.000 15.65 5.35 39.64 4.49
2147 2588 0.231279 GCGAAAGTGTACCACGTGTG 59.769 55.000 15.65 8.62 39.64 3.82
2161 2602 3.065575 GTGTGGCACGGGAATAGAG 57.934 57.895 13.77 0.00 0.00 2.43
2162 2603 0.249398 GTGTGGCACGGGAATAGAGT 59.751 55.000 13.77 0.00 0.00 3.24
2163 2604 0.249120 TGTGGCACGGGAATAGAGTG 59.751 55.000 13.77 0.00 38.77 3.51
2164 2605 0.462047 GTGGCACGGGAATAGAGTGG 60.462 60.000 0.00 0.00 36.48 4.00
2165 2606 0.616395 TGGCACGGGAATAGAGTGGA 60.616 55.000 0.00 0.00 36.48 4.02
2166 2607 0.539986 GGCACGGGAATAGAGTGGAA 59.460 55.000 0.00 0.00 36.48 3.53
2167 2608 1.065709 GGCACGGGAATAGAGTGGAAA 60.066 52.381 0.00 0.00 36.48 3.13
2168 2609 2.007608 GCACGGGAATAGAGTGGAAAC 58.992 52.381 0.00 0.00 36.48 2.78
2169 2610 2.629051 CACGGGAATAGAGTGGAAACC 58.371 52.381 0.00 0.00 32.68 3.27
2170 2611 2.027561 CACGGGAATAGAGTGGAAACCA 60.028 50.000 0.00 0.00 32.68 3.67
2186 2627 4.918588 GAAACCACTTCCCCTTGATAAGA 58.081 43.478 0.00 0.00 0.00 2.10
2187 2628 5.510430 GAAACCACTTCCCCTTGATAAGAT 58.490 41.667 0.00 0.00 0.00 2.40
2188 2629 5.536497 AACCACTTCCCCTTGATAAGATT 57.464 39.130 0.00 0.00 0.00 2.40
2189 2630 4.860022 ACCACTTCCCCTTGATAAGATTG 58.140 43.478 0.00 0.00 0.00 2.67
2190 2631 4.210331 CCACTTCCCCTTGATAAGATTGG 58.790 47.826 0.00 0.00 0.00 3.16
2191 2632 3.633986 CACTTCCCCTTGATAAGATTGGC 59.366 47.826 0.00 0.00 0.00 4.52
2192 2633 3.225940 CTTCCCCTTGATAAGATTGGCC 58.774 50.000 0.00 0.00 0.00 5.36
2193 2634 2.502745 TCCCCTTGATAAGATTGGCCT 58.497 47.619 3.32 0.00 0.00 5.19
2194 2635 2.175499 TCCCCTTGATAAGATTGGCCTG 59.825 50.000 3.32 0.00 0.00 4.85
2195 2636 2.175499 CCCCTTGATAAGATTGGCCTGA 59.825 50.000 3.32 0.00 0.00 3.86
2196 2637 3.373001 CCCCTTGATAAGATTGGCCTGAA 60.373 47.826 3.32 0.00 0.00 3.02
2197 2638 3.887716 CCCTTGATAAGATTGGCCTGAAG 59.112 47.826 3.32 0.00 0.00 3.02
2198 2639 3.887716 CCTTGATAAGATTGGCCTGAAGG 59.112 47.826 3.32 0.00 38.53 3.46
2199 2640 4.530875 CTTGATAAGATTGGCCTGAAGGT 58.469 43.478 3.32 0.00 37.57 3.50
2200 2641 4.591321 TGATAAGATTGGCCTGAAGGTT 57.409 40.909 3.32 0.00 37.57 3.50
2201 2642 4.934356 TGATAAGATTGGCCTGAAGGTTT 58.066 39.130 3.32 0.00 37.57 3.27
2202 2643 4.706476 TGATAAGATTGGCCTGAAGGTTTG 59.294 41.667 3.32 0.00 37.57 2.93
2203 2644 2.683211 AGATTGGCCTGAAGGTTTGT 57.317 45.000 3.32 0.00 37.57 2.83
2204 2645 3.806949 AGATTGGCCTGAAGGTTTGTA 57.193 42.857 3.32 0.00 37.57 2.41
2205 2646 4.112634 AGATTGGCCTGAAGGTTTGTAA 57.887 40.909 3.32 0.00 37.57 2.41
2206 2647 4.677182 AGATTGGCCTGAAGGTTTGTAAT 58.323 39.130 3.32 0.00 37.57 1.89
2207 2648 4.706962 AGATTGGCCTGAAGGTTTGTAATC 59.293 41.667 3.32 0.00 37.57 1.75
2208 2649 3.806949 TGGCCTGAAGGTTTGTAATCT 57.193 42.857 3.32 0.00 37.57 2.40
2209 2650 4.919774 TGGCCTGAAGGTTTGTAATCTA 57.080 40.909 3.32 0.00 37.57 1.98
2210 2651 4.843728 TGGCCTGAAGGTTTGTAATCTAG 58.156 43.478 3.32 0.00 37.57 2.43
2211 2652 4.288626 TGGCCTGAAGGTTTGTAATCTAGT 59.711 41.667 3.32 0.00 37.57 2.57
2212 2653 5.486063 TGGCCTGAAGGTTTGTAATCTAGTA 59.514 40.000 3.32 0.00 37.57 1.82
2213 2654 6.049790 GGCCTGAAGGTTTGTAATCTAGTAG 58.950 44.000 0.00 0.00 37.57 2.57
2214 2655 5.524281 GCCTGAAGGTTTGTAATCTAGTAGC 59.476 44.000 0.00 0.00 37.57 3.58
2215 2656 6.630638 GCCTGAAGGTTTGTAATCTAGTAGCT 60.631 42.308 0.00 0.00 37.57 3.32
2216 2657 7.417570 GCCTGAAGGTTTGTAATCTAGTAGCTA 60.418 40.741 0.00 0.00 37.57 3.32
2217 2658 7.921745 CCTGAAGGTTTGTAATCTAGTAGCTAC 59.078 40.741 16.43 16.43 0.00 3.58
2218 2659 7.779073 TGAAGGTTTGTAATCTAGTAGCTACC 58.221 38.462 20.31 2.67 0.00 3.18
2219 2660 6.728089 AGGTTTGTAATCTAGTAGCTACCC 57.272 41.667 20.31 9.45 0.00 3.69
2220 2661 5.601729 AGGTTTGTAATCTAGTAGCTACCCC 59.398 44.000 20.31 0.00 0.00 4.95
2221 2662 5.601729 GGTTTGTAATCTAGTAGCTACCCCT 59.398 44.000 20.31 4.80 0.00 4.79
2222 2663 6.239261 GGTTTGTAATCTAGTAGCTACCCCTC 60.239 46.154 20.31 5.80 0.00 4.30
2223 2664 5.926580 TGTAATCTAGTAGCTACCCCTCT 57.073 43.478 20.31 4.03 0.00 3.69
2224 2665 7.398289 TTGTAATCTAGTAGCTACCCCTCTA 57.602 40.000 20.31 5.04 0.00 2.43
2225 2666 7.585884 TGTAATCTAGTAGCTACCCCTCTAT 57.414 40.000 20.31 2.53 0.00 1.98
2226 2667 7.631933 TGTAATCTAGTAGCTACCCCTCTATC 58.368 42.308 20.31 6.25 0.00 2.08
2227 2668 6.721843 AATCTAGTAGCTACCCCTCTATCA 57.278 41.667 20.31 0.00 0.00 2.15
2228 2669 6.721843 ATCTAGTAGCTACCCCTCTATCAA 57.278 41.667 20.31 0.00 0.00 2.57
2229 2670 5.878627 TCTAGTAGCTACCCCTCTATCAAC 58.121 45.833 20.31 0.00 0.00 3.18
2230 2671 4.537945 AGTAGCTACCCCTCTATCAACA 57.462 45.455 20.31 0.00 0.00 3.33
2231 2672 5.081315 AGTAGCTACCCCTCTATCAACAT 57.919 43.478 20.31 0.00 0.00 2.71
2232 2673 6.215515 AGTAGCTACCCCTCTATCAACATA 57.784 41.667 20.31 0.00 0.00 2.29
2233 2674 6.621394 AGTAGCTACCCCTCTATCAACATAA 58.379 40.000 20.31 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.292159 GCCTGCCGTCGGGTTTTT 61.292 61.111 14.38 0.00 40.99 1.94
34 35 2.127118 CGTTTTGGCTGCTCGCAG 60.127 61.111 14.30 14.30 46.15 5.18
35 36 4.326766 GCGTTTTGGCTGCTCGCA 62.327 61.111 16.06 0.00 45.01 5.10
36 37 4.326766 TGCGTTTTGGCTGCTCGC 62.327 61.111 0.00 9.24 45.70 5.03
37 38 2.127118 CTGCGTTTTGGCTGCTCG 60.127 61.111 0.00 0.00 0.00 5.03
41 42 0.109597 CCTTAGCTGCGTTTTGGCTG 60.110 55.000 0.00 0.00 37.50 4.85
42 43 0.250727 TCCTTAGCTGCGTTTTGGCT 60.251 50.000 0.00 0.00 39.74 4.75
43 44 0.596082 TTCCTTAGCTGCGTTTTGGC 59.404 50.000 0.00 0.00 0.00 4.52
44 45 3.244976 CATTTCCTTAGCTGCGTTTTGG 58.755 45.455 0.00 0.00 0.00 3.28
45 46 3.057596 TCCATTTCCTTAGCTGCGTTTTG 60.058 43.478 0.00 0.00 0.00 2.44
46 47 3.153919 TCCATTTCCTTAGCTGCGTTTT 58.846 40.909 0.00 0.00 0.00 2.43
47 48 2.790433 TCCATTTCCTTAGCTGCGTTT 58.210 42.857 0.00 0.00 0.00 3.60
48 49 2.489938 TCCATTTCCTTAGCTGCGTT 57.510 45.000 0.00 0.00 0.00 4.84
49 50 2.565841 GATCCATTTCCTTAGCTGCGT 58.434 47.619 0.00 0.00 0.00 5.24
50 51 1.528586 CGATCCATTTCCTTAGCTGCG 59.471 52.381 0.00 0.00 0.00 5.18
51 52 2.805099 CTCGATCCATTTCCTTAGCTGC 59.195 50.000 0.00 0.00 0.00 5.25
52 53 2.805099 GCTCGATCCATTTCCTTAGCTG 59.195 50.000 0.00 0.00 0.00 4.24
53 54 2.546795 CGCTCGATCCATTTCCTTAGCT 60.547 50.000 0.00 0.00 0.00 3.32
54 55 1.795286 CGCTCGATCCATTTCCTTAGC 59.205 52.381 0.00 0.00 0.00 3.09
55 56 2.408050 CCGCTCGATCCATTTCCTTAG 58.592 52.381 0.00 0.00 0.00 2.18
56 57 1.540363 GCCGCTCGATCCATTTCCTTA 60.540 52.381 0.00 0.00 0.00 2.69
57 58 0.815615 GCCGCTCGATCCATTTCCTT 60.816 55.000 0.00 0.00 0.00 3.36
58 59 1.227674 GCCGCTCGATCCATTTCCT 60.228 57.895 0.00 0.00 0.00 3.36
59 60 2.254464 GGCCGCTCGATCCATTTCC 61.254 63.158 0.00 0.00 0.00 3.13
60 61 2.254464 GGGCCGCTCGATCCATTTC 61.254 63.158 0.00 0.00 0.00 2.17
61 62 2.203209 GGGCCGCTCGATCCATTT 60.203 61.111 0.00 0.00 0.00 2.32
62 63 3.042733 TTGGGCCGCTCGATCCATT 62.043 57.895 0.00 0.00 0.00 3.16
63 64 3.479203 TTGGGCCGCTCGATCCAT 61.479 61.111 0.00 0.00 0.00 3.41
64 65 4.467084 GTTGGGCCGCTCGATCCA 62.467 66.667 0.00 0.00 0.00 3.41
66 67 4.508128 TCGTTGGGCCGCTCGATC 62.508 66.667 12.11 0.00 0.00 3.69
67 68 4.514577 CTCGTTGGGCCGCTCGAT 62.515 66.667 15.41 0.00 0.00 3.59
77 78 3.672255 CTTGCGCCATGCTCGTTGG 62.672 63.158 4.18 0.00 46.63 3.77
78 79 2.202388 CTTGCGCCATGCTCGTTG 60.202 61.111 4.18 0.00 46.63 4.10
79 80 4.107051 GCTTGCGCCATGCTCGTT 62.107 61.111 4.18 0.00 46.63 3.85
97 98 2.190578 CGCCATTCTGGGTCTCCC 59.809 66.667 0.00 0.00 45.71 4.30
98 99 2.190578 CCGCCATTCTGGGTCTCC 59.809 66.667 0.00 0.00 38.19 3.71
99 100 2.190578 CCCGCCATTCTGGGTCTC 59.809 66.667 0.00 0.00 40.76 3.36
112 113 0.035725 AAACCTGTTAGGCTACCCGC 60.036 55.000 0.00 0.00 39.63 6.13
113 114 2.027469 AGAAAACCTGTTAGGCTACCCG 60.027 50.000 0.00 0.00 39.63 5.28
114 115 3.715638 AGAAAACCTGTTAGGCTACCC 57.284 47.619 0.00 0.00 39.63 3.69
115 116 5.742063 ACATAGAAAACCTGTTAGGCTACC 58.258 41.667 0.00 0.00 39.63 3.18
116 117 6.315642 GGAACATAGAAAACCTGTTAGGCTAC 59.684 42.308 0.00 0.00 39.63 3.58
117 118 6.013206 TGGAACATAGAAAACCTGTTAGGCTA 60.013 38.462 0.00 0.00 39.63 3.93
118 119 5.222048 TGGAACATAGAAAACCTGTTAGGCT 60.222 40.000 0.00 0.00 39.63 4.58
119 120 5.007682 TGGAACATAGAAAACCTGTTAGGC 58.992 41.667 0.00 0.00 39.63 3.93
120 121 6.238648 AGTGGAACATAGAAAACCTGTTAGG 58.761 40.000 0.00 0.00 44.52 2.69
121 122 7.549488 CCTAGTGGAACATAGAAAACCTGTTAG 59.451 40.741 0.00 0.00 44.52 2.34
122 123 7.016858 ACCTAGTGGAACATAGAAAACCTGTTA 59.983 37.037 0.00 0.00 44.52 2.41
123 124 6.183361 ACCTAGTGGAACATAGAAAACCTGTT 60.183 38.462 0.00 0.00 44.52 3.16
124 125 5.309806 ACCTAGTGGAACATAGAAAACCTGT 59.690 40.000 0.00 0.00 44.52 4.00
125 126 5.805728 ACCTAGTGGAACATAGAAAACCTG 58.194 41.667 0.00 0.00 44.52 4.00
126 127 7.563724 TTACCTAGTGGAACATAGAAAACCT 57.436 36.000 0.00 0.00 44.52 3.50
127 128 8.674607 CAATTACCTAGTGGAACATAGAAAACC 58.325 37.037 0.00 0.00 44.52 3.27
128 129 8.182227 GCAATTACCTAGTGGAACATAGAAAAC 58.818 37.037 0.00 0.00 44.52 2.43
129 130 8.107095 AGCAATTACCTAGTGGAACATAGAAAA 58.893 33.333 0.00 0.00 44.52 2.29
130 131 7.630082 AGCAATTACCTAGTGGAACATAGAAA 58.370 34.615 0.00 0.00 44.52 2.52
131 132 7.195374 AGCAATTACCTAGTGGAACATAGAA 57.805 36.000 0.00 0.00 44.52 2.10
132 133 6.183360 GGAGCAATTACCTAGTGGAACATAGA 60.183 42.308 0.00 0.00 44.52 1.98
133 134 5.992217 GGAGCAATTACCTAGTGGAACATAG 59.008 44.000 0.00 0.00 44.52 2.23
134 135 5.427157 TGGAGCAATTACCTAGTGGAACATA 59.573 40.000 0.00 0.00 44.52 2.29
135 136 4.227300 TGGAGCAATTACCTAGTGGAACAT 59.773 41.667 0.00 0.00 44.52 2.71
136 137 3.585289 TGGAGCAATTACCTAGTGGAACA 59.415 43.478 0.00 0.00 41.43 3.18
137 138 4.216411 TGGAGCAATTACCTAGTGGAAC 57.784 45.455 0.00 0.00 37.04 3.62
138 139 5.450818 AATGGAGCAATTACCTAGTGGAA 57.549 39.130 0.00 0.00 37.04 3.53
139 140 5.427157 TGTAATGGAGCAATTACCTAGTGGA 59.573 40.000 11.95 0.00 40.72 4.02
140 141 5.680619 TGTAATGGAGCAATTACCTAGTGG 58.319 41.667 11.95 0.00 40.72 4.00
141 142 7.807977 ATTGTAATGGAGCAATTACCTAGTG 57.192 36.000 11.95 0.00 40.72 2.74
196 197 6.207691 ACAATAACATGGCAGGTAAATCAC 57.792 37.500 4.75 0.00 0.00 3.06
203 204 5.714333 TCACATTAACAATAACATGGCAGGT 59.286 36.000 0.00 0.00 0.00 4.00
205 206 9.236691 GTAATCACATTAACAATAACATGGCAG 57.763 33.333 0.00 0.00 0.00 4.85
244 245 6.418057 TTGATCCAAGTGGCAATTAAAGTT 57.582 33.333 0.00 0.00 34.44 2.66
313 316 0.606604 ACCGCCTCAACTATCACGTT 59.393 50.000 0.00 0.00 0.00 3.99
315 318 1.722011 AAACCGCCTCAACTATCACG 58.278 50.000 0.00 0.00 0.00 4.35
329 332 4.215965 CAACCAGTATTCGTTGAAAACCG 58.784 43.478 0.00 0.00 46.28 4.44
358 361 4.126520 TCCCCTATTTTCAGTTTTGCCT 57.873 40.909 0.00 0.00 0.00 4.75
367 372 5.231552 TCCATCCTACATCCCCTATTTTCA 58.768 41.667 0.00 0.00 0.00 2.69
368 373 5.548056 TCTCCATCCTACATCCCCTATTTTC 59.452 44.000 0.00 0.00 0.00 2.29
409 414 8.879427 ATAGGTAAGGTTATGTTTTGCTTCTT 57.121 30.769 0.00 0.00 0.00 2.52
438 443 8.985315 TGAGACGGAGGAAGTATATACTTAAA 57.015 34.615 24.69 2.80 45.84 1.52
447 452 9.976776 TCTTATATTATGAGACGGAGGAAGTAT 57.023 33.333 0.00 0.00 0.00 2.12
448 453 9.803507 TTCTTATATTATGAGACGGAGGAAGTA 57.196 33.333 0.00 0.00 0.00 2.24
449 454 8.707796 TTCTTATATTATGAGACGGAGGAAGT 57.292 34.615 0.00 0.00 0.00 3.01
450 455 9.579768 CATTCTTATATTATGAGACGGAGGAAG 57.420 37.037 0.00 0.00 0.00 3.46
451 456 9.090103 ACATTCTTATATTATGAGACGGAGGAA 57.910 33.333 0.00 0.00 0.00 3.36
452 457 8.651589 ACATTCTTATATTATGAGACGGAGGA 57.348 34.615 0.00 0.00 0.00 3.71
453 458 9.712305 AAACATTCTTATATTATGAGACGGAGG 57.288 33.333 0.00 0.00 0.00 4.30
466 471 9.391006 TCCGTAGCTTCAAAAACATTCTTATAT 57.609 29.630 0.00 0.00 0.00 0.86
467 472 8.780846 TCCGTAGCTTCAAAAACATTCTTATA 57.219 30.769 0.00 0.00 0.00 0.98
468 473 7.148239 CCTCCGTAGCTTCAAAAACATTCTTAT 60.148 37.037 0.00 0.00 0.00 1.73
469 474 6.148811 CCTCCGTAGCTTCAAAAACATTCTTA 59.851 38.462 0.00 0.00 0.00 2.10
470 475 5.048713 CCTCCGTAGCTTCAAAAACATTCTT 60.049 40.000 0.00 0.00 0.00 2.52
471 476 4.455877 CCTCCGTAGCTTCAAAAACATTCT 59.544 41.667 0.00 0.00 0.00 2.40
472 477 4.379499 CCCTCCGTAGCTTCAAAAACATTC 60.379 45.833 0.00 0.00 0.00 2.67
473 478 3.506067 CCCTCCGTAGCTTCAAAAACATT 59.494 43.478 0.00 0.00 0.00 2.71
474 479 3.081804 CCCTCCGTAGCTTCAAAAACAT 58.918 45.455 0.00 0.00 0.00 2.71
475 480 2.105134 TCCCTCCGTAGCTTCAAAAACA 59.895 45.455 0.00 0.00 0.00 2.83
476 481 2.742589 CTCCCTCCGTAGCTTCAAAAAC 59.257 50.000 0.00 0.00 0.00 2.43
477 482 2.370849 ACTCCCTCCGTAGCTTCAAAAA 59.629 45.455 0.00 0.00 0.00 1.94
478 483 1.975680 ACTCCCTCCGTAGCTTCAAAA 59.024 47.619 0.00 0.00 0.00 2.44
479 484 1.640917 ACTCCCTCCGTAGCTTCAAA 58.359 50.000 0.00 0.00 0.00 2.69
480 485 2.519771 TACTCCCTCCGTAGCTTCAA 57.480 50.000 0.00 0.00 0.00 2.69
481 486 2.750141 ATACTCCCTCCGTAGCTTCA 57.250 50.000 0.00 0.00 0.00 3.02
482 487 2.483491 CGTATACTCCCTCCGTAGCTTC 59.517 54.545 0.00 0.00 0.00 3.86
483 488 2.105477 TCGTATACTCCCTCCGTAGCTT 59.895 50.000 0.00 0.00 0.00 3.74
484 489 1.696336 TCGTATACTCCCTCCGTAGCT 59.304 52.381 0.56 0.00 0.00 3.32
485 490 2.075338 CTCGTATACTCCCTCCGTAGC 58.925 57.143 0.56 0.00 0.00 3.58
486 491 3.674528 TCTCGTATACTCCCTCCGTAG 57.325 52.381 0.56 0.00 0.00 3.51
487 492 3.643320 TCTTCTCGTATACTCCCTCCGTA 59.357 47.826 0.56 0.00 0.00 4.02
488 493 2.437281 TCTTCTCGTATACTCCCTCCGT 59.563 50.000 0.56 0.00 0.00 4.69
489 494 3.068560 CTCTTCTCGTATACTCCCTCCG 58.931 54.545 0.56 0.00 0.00 4.63
490 495 4.067192 GTCTCTTCTCGTATACTCCCTCC 58.933 52.174 0.56 0.00 0.00 4.30
491 496 3.742369 CGTCTCTTCTCGTATACTCCCTC 59.258 52.174 0.56 0.00 0.00 4.30
492 497 3.387374 TCGTCTCTTCTCGTATACTCCCT 59.613 47.826 0.56 0.00 0.00 4.20
493 498 3.726607 TCGTCTCTTCTCGTATACTCCC 58.273 50.000 0.56 0.00 0.00 4.30
494 499 4.619973 TCTCGTCTCTTCTCGTATACTCC 58.380 47.826 0.56 0.00 0.00 3.85
495 500 5.522456 TCTCTCGTCTCTTCTCGTATACTC 58.478 45.833 0.56 0.00 0.00 2.59
496 501 5.518848 TCTCTCGTCTCTTCTCGTATACT 57.481 43.478 0.56 0.00 0.00 2.12
497 502 5.693104 ACATCTCTCGTCTCTTCTCGTATAC 59.307 44.000 0.00 0.00 0.00 1.47
502 507 2.933260 TCACATCTCTCGTCTCTTCTCG 59.067 50.000 0.00 0.00 0.00 4.04
512 517 6.036408 TGCAATTTATGTTCTCACATCTCTCG 59.964 38.462 0.00 0.00 43.06 4.04
521 526 4.940654 TCGGATGTGCAATTTATGTTCTCA 59.059 37.500 0.00 0.00 0.00 3.27
540 545 1.683385 CATATCTGACAGGCACTCGGA 59.317 52.381 1.81 0.00 34.60 4.55
541 546 1.269988 CCATATCTGACAGGCACTCGG 60.270 57.143 1.81 0.00 34.60 4.63
542 547 1.871408 GCCATATCTGACAGGCACTCG 60.871 57.143 1.81 0.00 46.26 4.18
543 548 1.876322 GCCATATCTGACAGGCACTC 58.124 55.000 1.81 0.00 46.26 3.51
547 552 2.057137 TTTGGCCATATCTGACAGGC 57.943 50.000 6.09 7.98 46.28 4.85
548 553 4.703575 CCATATTTGGCCATATCTGACAGG 59.296 45.833 18.99 8.05 35.85 4.00
557 614 5.596361 ACGTTTCATTCCATATTTGGCCATA 59.404 36.000 6.09 0.57 43.29 2.74
585 642 0.249657 GCTGGAGGTAAGCTCCGATG 60.250 60.000 0.00 0.00 43.65 3.84
682 739 4.882427 GGCTTTCTCCAGTATACTTTTCCC 59.118 45.833 1.56 0.00 0.00 3.97
683 740 5.497474 TGGCTTTCTCCAGTATACTTTTCC 58.503 41.667 1.56 0.00 0.00 3.13
684 741 7.306213 GTTTGGCTTTCTCCAGTATACTTTTC 58.694 38.462 1.56 0.00 37.44 2.29
685 742 6.208797 GGTTTGGCTTTCTCCAGTATACTTTT 59.791 38.462 1.56 0.00 37.44 2.27
687 744 5.222048 TGGTTTGGCTTTCTCCAGTATACTT 60.222 40.000 1.56 0.00 37.44 2.24
688 745 4.288626 TGGTTTGGCTTTCTCCAGTATACT 59.711 41.667 0.00 0.00 37.44 2.12
690 747 4.919774 TGGTTTGGCTTTCTCCAGTATA 57.080 40.909 0.00 0.00 37.44 1.47
691 748 3.806949 TGGTTTGGCTTTCTCCAGTAT 57.193 42.857 0.00 0.00 37.44 2.12
692 749 3.586470 TTGGTTTGGCTTTCTCCAGTA 57.414 42.857 0.00 0.00 37.44 2.74
897 1212 3.675228 GCTTAGGCTTAGCTTCGTGTACA 60.675 47.826 17.68 0.00 35.74 2.90
921 1236 7.836842 TGTGTATGAGTGATAGTATGTTGTGT 58.163 34.615 0.00 0.00 0.00 3.72
923 1238 6.980978 GCTGTGTATGAGTGATAGTATGTTGT 59.019 38.462 0.00 0.00 0.00 3.32
924 1239 6.422100 GGCTGTGTATGAGTGATAGTATGTTG 59.578 42.308 0.00 0.00 0.00 3.33
925 1240 6.098266 TGGCTGTGTATGAGTGATAGTATGTT 59.902 38.462 0.00 0.00 0.00 2.71
927 1242 5.923114 GTGGCTGTGTATGAGTGATAGTATG 59.077 44.000 0.00 0.00 0.00 2.39
929 1244 4.953579 TGTGGCTGTGTATGAGTGATAGTA 59.046 41.667 0.00 0.00 0.00 1.82
941 1269 1.967779 TCTAGCTTGTGTGGCTGTGTA 59.032 47.619 0.00 0.00 40.52 2.90
950 1278 3.088532 CTGAGGAGAGTCTAGCTTGTGT 58.911 50.000 0.00 0.00 0.00 3.72
986 1361 1.144936 GCCATTGCTAGCTCGGAGT 59.855 57.895 17.23 0.00 33.53 3.85
991 1366 1.468736 GCACTTTGCCATTGCTAGCTC 60.469 52.381 17.23 0.74 37.42 4.09
1071 1446 2.867855 AAGTGCGCGGTCCTTCTCA 61.868 57.895 8.83 0.00 0.00 3.27
1279 1676 4.058817 AGAAGTCTTAAGCCACAAGTTCG 58.941 43.478 0.00 0.00 0.00 3.95
1290 1697 7.921745 GGTGGTGCTAACTATAGAAGTCTTAAG 59.078 40.741 6.78 0.00 37.50 1.85
1306 1725 0.766131 TTTCTTCCGGGTGGTGCTAA 59.234 50.000 0.00 0.00 36.30 3.09
1378 1798 9.533831 AAGGAACCAACATAAACTGAATAGAAT 57.466 29.630 0.00 0.00 0.00 2.40
1383 1803 5.838521 ACCAAGGAACCAACATAAACTGAAT 59.161 36.000 0.00 0.00 0.00 2.57
1437 1873 3.368236 GGCGATCAGACTGACAAAGTAAC 59.632 47.826 7.47 0.00 40.07 2.50
1451 1887 3.244033 AGAAGACAAGAAGGCGATCAG 57.756 47.619 0.00 0.00 0.00 2.90
1512 1953 7.816513 TGTGAGTTTATGATGAGAGTCAAGAAG 59.183 37.037 0.00 0.00 0.00 2.85
1524 1965 5.287752 GCATGCAACTTGTGAGTTTATGATG 59.712 40.000 14.21 0.00 43.48 3.07
1544 1985 3.904571 ACTTGCATACTGTTGTTGCATG 58.095 40.909 16.81 16.81 45.04 4.06
1591 2032 2.482721 CCACATAAACCAAGGTGACGTC 59.517 50.000 9.11 9.11 33.16 4.34
1639 2080 8.577048 AGATGATCAAGACAAAATCTCATTGT 57.423 30.769 0.00 0.00 43.37 2.71
1640 2081 9.290483 CAAGATGATCAAGACAAAATCTCATTG 57.710 33.333 0.00 0.00 36.27 2.82
1641 2082 9.021807 ACAAGATGATCAAGACAAAATCTCATT 57.978 29.630 0.00 0.00 36.27 2.57
1642 2083 8.577048 ACAAGATGATCAAGACAAAATCTCAT 57.423 30.769 0.00 0.00 36.27 2.90
1643 2084 7.120285 GGACAAGATGATCAAGACAAAATCTCA 59.880 37.037 0.00 0.00 36.27 3.27
1644 2085 7.336427 AGGACAAGATGATCAAGACAAAATCTC 59.664 37.037 0.00 0.00 36.27 2.75
1645 2086 7.173722 AGGACAAGATGATCAAGACAAAATCT 58.826 34.615 0.00 0.00 40.46 2.40
1646 2087 7.388460 AGGACAAGATGATCAAGACAAAATC 57.612 36.000 0.00 0.00 0.00 2.17
1648 2089 9.958180 TTATAGGACAAGATGATCAAGACAAAA 57.042 29.630 0.00 0.00 0.00 2.44
1649 2090 9.605275 CTTATAGGACAAGATGATCAAGACAAA 57.395 33.333 0.00 0.00 0.00 2.83
1650 2091 8.762645 ACTTATAGGACAAGATGATCAAGACAA 58.237 33.333 0.00 0.00 0.00 3.18
1651 2092 8.311395 ACTTATAGGACAAGATGATCAAGACA 57.689 34.615 0.00 0.00 0.00 3.41
1656 2097 9.379770 TCCATAACTTATAGGACAAGATGATCA 57.620 33.333 0.00 0.00 0.00 2.92
1666 2107 6.316513 AGGAGGAGTCCATAACTTATAGGAC 58.683 44.000 12.86 15.67 46.80 3.85
1667 2108 6.547396 AGGAGGAGTCCATAACTTATAGGA 57.453 41.667 12.86 0.00 46.80 2.94
1668 2109 7.290248 TCAAAGGAGGAGTCCATAACTTATAGG 59.710 40.741 12.86 2.09 46.80 2.57
1669 2110 8.251383 TCAAAGGAGGAGTCCATAACTTATAG 57.749 38.462 12.86 4.48 46.80 1.31
1670 2111 8.798975 ATCAAAGGAGGAGTCCATAACTTATA 57.201 34.615 12.86 2.68 46.80 0.98
1671 2112 7.698163 ATCAAAGGAGGAGTCCATAACTTAT 57.302 36.000 12.86 0.00 46.80 1.73
1672 2113 8.251383 CTATCAAAGGAGGAGTCCATAACTTA 57.749 38.462 12.86 0.00 46.80 2.24
1673 2114 7.130681 CTATCAAAGGAGGAGTCCATAACTT 57.869 40.000 12.86 6.88 46.80 2.66
1674 2115 6.739331 CTATCAAAGGAGGAGTCCATAACT 57.261 41.667 12.86 0.33 46.80 2.24
2070 2511 0.320508 GTCGGAGTCACCAACTTCCC 60.321 60.000 0.00 0.00 38.74 3.97
2071 2512 0.391597 TGTCGGAGTCACCAACTTCC 59.608 55.000 0.00 0.00 38.74 3.46
2072 2513 2.457366 ATGTCGGAGTCACCAACTTC 57.543 50.000 0.00 0.00 38.74 3.01
2073 2514 3.556423 GGTTATGTCGGAGTCACCAACTT 60.556 47.826 0.00 0.00 38.74 2.66
2074 2515 2.028385 GGTTATGTCGGAGTCACCAACT 60.028 50.000 0.00 0.00 42.42 3.16
2075 2516 2.344025 GGTTATGTCGGAGTCACCAAC 58.656 52.381 0.00 0.00 38.90 3.77
2076 2517 1.276989 GGGTTATGTCGGAGTCACCAA 59.723 52.381 0.00 0.00 38.90 3.67
2077 2518 0.899720 GGGTTATGTCGGAGTCACCA 59.100 55.000 0.00 0.00 38.90 4.17
2078 2519 0.177373 GGGGTTATGTCGGAGTCACC 59.823 60.000 0.00 0.00 0.00 4.02
2079 2520 0.177373 GGGGGTTATGTCGGAGTCAC 59.823 60.000 0.00 0.00 0.00 3.67
2080 2521 0.042131 AGGGGGTTATGTCGGAGTCA 59.958 55.000 0.00 0.00 0.00 3.41
2081 2522 0.751452 GAGGGGGTTATGTCGGAGTC 59.249 60.000 0.00 0.00 0.00 3.36
2082 2523 1.041447 CGAGGGGGTTATGTCGGAGT 61.041 60.000 0.00 0.00 0.00 3.85
2083 2524 1.041447 ACGAGGGGGTTATGTCGGAG 61.041 60.000 0.00 0.00 36.74 4.63
2084 2525 0.258484 TACGAGGGGGTTATGTCGGA 59.742 55.000 0.00 0.00 36.74 4.55
2085 2526 1.271656 GATACGAGGGGGTTATGTCGG 59.728 57.143 0.00 0.00 36.74 4.79
2086 2527 1.068748 CGATACGAGGGGGTTATGTCG 60.069 57.143 0.00 0.00 38.40 4.35
2087 2528 1.336609 GCGATACGAGGGGGTTATGTC 60.337 57.143 0.00 0.00 0.00 3.06
2088 2529 0.677842 GCGATACGAGGGGGTTATGT 59.322 55.000 0.00 0.00 0.00 2.29
2089 2530 0.677288 TGCGATACGAGGGGGTTATG 59.323 55.000 0.00 0.00 0.00 1.90
2090 2531 0.677842 GTGCGATACGAGGGGGTTAT 59.322 55.000 0.00 0.00 0.00 1.89
2091 2532 0.683828 TGTGCGATACGAGGGGGTTA 60.684 55.000 0.00 0.00 0.00 2.85
2092 2533 1.335132 ATGTGCGATACGAGGGGGTT 61.335 55.000 0.00 0.00 0.00 4.11
2093 2534 0.468585 TATGTGCGATACGAGGGGGT 60.469 55.000 0.00 0.00 0.00 4.95
2094 2535 0.895530 ATATGTGCGATACGAGGGGG 59.104 55.000 0.00 0.00 0.00 5.40
2095 2536 1.996292 CATATGTGCGATACGAGGGG 58.004 55.000 0.00 0.00 0.00 4.79
2096 2537 1.350193 GCATATGTGCGATACGAGGG 58.650 55.000 4.29 0.00 42.28 4.30
2107 2548 0.040157 CGAATTGGCCCGCATATGTG 60.040 55.000 9.39 9.39 0.00 3.21
2108 2549 1.172180 CCGAATTGGCCCGCATATGT 61.172 55.000 0.00 0.00 0.00 2.29
2109 2550 1.580942 CCGAATTGGCCCGCATATG 59.419 57.895 0.00 0.00 0.00 1.78
2110 2551 1.603455 CCCGAATTGGCCCGCATAT 60.603 57.895 0.00 0.00 35.87 1.78
2111 2552 2.203280 CCCGAATTGGCCCGCATA 60.203 61.111 0.00 0.00 35.87 3.14
2119 2560 1.129811 GTACACTTTCGCCCGAATTGG 59.870 52.381 3.77 1.42 33.79 3.16
2120 2561 1.129811 GGTACACTTTCGCCCGAATTG 59.870 52.381 3.77 7.33 33.79 2.32
2121 2562 1.270947 TGGTACACTTTCGCCCGAATT 60.271 47.619 3.77 0.00 33.79 2.17
2122 2563 0.322322 TGGTACACTTTCGCCCGAAT 59.678 50.000 3.77 0.00 33.79 3.34
2123 2564 1.747145 TGGTACACTTTCGCCCGAA 59.253 52.632 0.00 0.00 0.00 4.30
2124 2565 3.457484 TGGTACACTTTCGCCCGA 58.543 55.556 0.00 0.00 0.00 5.14
2143 2584 0.249398 ACTCTATTCCCGTGCCACAC 59.751 55.000 0.00 0.00 0.00 3.82
2144 2585 0.249120 CACTCTATTCCCGTGCCACA 59.751 55.000 0.00 0.00 0.00 4.17
2145 2586 0.462047 CCACTCTATTCCCGTGCCAC 60.462 60.000 0.00 0.00 0.00 5.01
2146 2587 0.616395 TCCACTCTATTCCCGTGCCA 60.616 55.000 0.00 0.00 0.00 4.92
2147 2588 0.539986 TTCCACTCTATTCCCGTGCC 59.460 55.000 0.00 0.00 0.00 5.01
2148 2589 2.007608 GTTTCCACTCTATTCCCGTGC 58.992 52.381 0.00 0.00 0.00 5.34
2149 2590 2.027561 TGGTTTCCACTCTATTCCCGTG 60.028 50.000 0.00 0.00 0.00 4.94
2150 2591 2.262637 TGGTTTCCACTCTATTCCCGT 58.737 47.619 0.00 0.00 0.00 5.28
2164 2605 4.918588 TCTTATCAAGGGGAAGTGGTTTC 58.081 43.478 0.00 0.00 34.93 2.78
2165 2606 5.536497 ATCTTATCAAGGGGAAGTGGTTT 57.464 39.130 0.00 0.00 0.00 3.27
2166 2607 5.264395 CAATCTTATCAAGGGGAAGTGGTT 58.736 41.667 0.00 0.00 0.00 3.67
2167 2608 4.325344 CCAATCTTATCAAGGGGAAGTGGT 60.325 45.833 0.00 0.00 0.00 4.16
2168 2609 4.210331 CCAATCTTATCAAGGGGAAGTGG 58.790 47.826 0.00 0.00 0.00 4.00
2169 2610 3.633986 GCCAATCTTATCAAGGGGAAGTG 59.366 47.826 0.00 0.00 0.00 3.16
2170 2611 3.373110 GGCCAATCTTATCAAGGGGAAGT 60.373 47.826 0.00 0.00 0.00 3.01
2171 2612 3.117360 AGGCCAATCTTATCAAGGGGAAG 60.117 47.826 5.01 0.00 0.00 3.46
2172 2613 2.858768 AGGCCAATCTTATCAAGGGGAA 59.141 45.455 5.01 0.00 0.00 3.97
2173 2614 2.175499 CAGGCCAATCTTATCAAGGGGA 59.825 50.000 5.01 0.00 0.00 4.81
2174 2615 2.175499 TCAGGCCAATCTTATCAAGGGG 59.825 50.000 5.01 0.00 0.00 4.79
2175 2616 3.582998 TCAGGCCAATCTTATCAAGGG 57.417 47.619 5.01 0.00 0.00 3.95
2176 2617 3.887716 CCTTCAGGCCAATCTTATCAAGG 59.112 47.826 5.01 0.00 0.00 3.61
2177 2618 4.530875 ACCTTCAGGCCAATCTTATCAAG 58.469 43.478 5.01 0.00 39.32 3.02
2178 2619 4.591321 ACCTTCAGGCCAATCTTATCAA 57.409 40.909 5.01 0.00 39.32 2.57
2179 2620 4.591321 AACCTTCAGGCCAATCTTATCA 57.409 40.909 5.01 0.00 39.32 2.15
2180 2621 4.706962 ACAAACCTTCAGGCCAATCTTATC 59.293 41.667 5.01 0.00 39.32 1.75
2181 2622 4.677182 ACAAACCTTCAGGCCAATCTTAT 58.323 39.130 5.01 0.00 39.32 1.73
2182 2623 4.112634 ACAAACCTTCAGGCCAATCTTA 57.887 40.909 5.01 0.00 39.32 2.10
2183 2624 2.962859 ACAAACCTTCAGGCCAATCTT 58.037 42.857 5.01 0.00 39.32 2.40
2184 2625 2.683211 ACAAACCTTCAGGCCAATCT 57.317 45.000 5.01 0.00 39.32 2.40
2185 2626 4.706962 AGATTACAAACCTTCAGGCCAATC 59.293 41.667 5.01 0.27 39.32 2.67
2186 2627 4.677182 AGATTACAAACCTTCAGGCCAAT 58.323 39.130 5.01 0.00 39.32 3.16
2187 2628 4.112634 AGATTACAAACCTTCAGGCCAA 57.887 40.909 5.01 0.00 39.32 4.52
2188 2629 3.806949 AGATTACAAACCTTCAGGCCA 57.193 42.857 5.01 0.00 39.32 5.36
2189 2630 4.844884 ACTAGATTACAAACCTTCAGGCC 58.155 43.478 0.00 0.00 39.32 5.19
2190 2631 5.524281 GCTACTAGATTACAAACCTTCAGGC 59.476 44.000 0.00 0.00 39.32 4.85
2191 2632 6.879400 AGCTACTAGATTACAAACCTTCAGG 58.121 40.000 0.00 0.00 42.17 3.86
2192 2633 7.921745 GGTAGCTACTAGATTACAAACCTTCAG 59.078 40.741 22.74 0.00 0.00 3.02
2193 2634 7.147776 GGGTAGCTACTAGATTACAAACCTTCA 60.148 40.741 22.74 0.00 0.00 3.02
2194 2635 7.208777 GGGTAGCTACTAGATTACAAACCTTC 58.791 42.308 22.74 0.51 0.00 3.46
2195 2636 6.099413 GGGGTAGCTACTAGATTACAAACCTT 59.901 42.308 22.74 0.00 0.00 3.50
2196 2637 5.601729 GGGGTAGCTACTAGATTACAAACCT 59.398 44.000 22.74 0.00 0.00 3.50
2197 2638 5.601729 AGGGGTAGCTACTAGATTACAAACC 59.398 44.000 22.74 10.71 0.00 3.27
2198 2639 6.550481 AGAGGGGTAGCTACTAGATTACAAAC 59.450 42.308 22.74 2.13 0.00 2.93
2199 2640 6.680540 AGAGGGGTAGCTACTAGATTACAAA 58.319 40.000 22.74 0.00 0.00 2.83
2200 2641 6.277064 AGAGGGGTAGCTACTAGATTACAA 57.723 41.667 22.74 0.00 0.00 2.41
2201 2642 5.926580 AGAGGGGTAGCTACTAGATTACA 57.073 43.478 22.74 0.00 0.00 2.41
2202 2643 7.631933 TGATAGAGGGGTAGCTACTAGATTAC 58.368 42.308 22.74 4.78 0.00 1.89
2203 2644 7.825983 TGATAGAGGGGTAGCTACTAGATTA 57.174 40.000 22.74 11.06 0.00 1.75
2204 2645 6.721843 TGATAGAGGGGTAGCTACTAGATT 57.278 41.667 22.74 9.36 0.00 2.40
2205 2646 6.045695 TGTTGATAGAGGGGTAGCTACTAGAT 59.954 42.308 22.74 7.40 0.00 1.98
2206 2647 5.371769 TGTTGATAGAGGGGTAGCTACTAGA 59.628 44.000 22.74 4.22 0.00 2.43
2207 2648 5.632118 TGTTGATAGAGGGGTAGCTACTAG 58.368 45.833 22.74 0.00 0.00 2.57
2208 2649 5.658198 TGTTGATAGAGGGGTAGCTACTA 57.342 43.478 22.74 7.95 0.00 1.82
2209 2650 4.537945 TGTTGATAGAGGGGTAGCTACT 57.462 45.455 22.74 3.69 0.00 2.57
2210 2651 6.912951 TTATGTTGATAGAGGGGTAGCTAC 57.087 41.667 15.88 15.88 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.