Multiple sequence alignment - TraesCS2B01G482400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G482400 chr2B 100.000 3029 0 0 1 3029 680192945 680195973 0.000000e+00 5594
1 TraesCS2B01G482400 chr2B 90.244 82 2 3 2621 2700 680195532 680195609 5.340000e-18 102
2 TraesCS2B01G482400 chr2B 90.244 82 2 3 2588 2665 680195565 680195644 5.340000e-18 102
3 TraesCS2B01G482400 chr2D 92.339 2715 110 33 1 2664 567476275 567478942 0.000000e+00 3771
4 TraesCS2B01G482400 chr2D 94.264 401 16 5 2629 3029 567478876 567479269 9.290000e-170 606
5 TraesCS2B01G482400 chr5B 88.691 2697 182 52 3 2677 230249466 230246871 0.000000e+00 3177
6 TraesCS2B01G482400 chr5B 91.935 186 14 1 2844 3029 230246703 230246519 3.000000e-65 259
7 TraesCS2B01G482400 chr5B 94.118 85 5 0 547 631 36727196 36727280 2.450000e-26 130
8 TraesCS2B01G482400 chr5A 88.523 2701 176 55 3 2677 282588885 282586293 0.000000e+00 3147
9 TraesCS2B01G482400 chr5A 80.048 416 31 10 2628 3029 282586370 282585993 8.330000e-66 261
10 TraesCS2B01G482400 chr5D 88.689 2670 180 54 3 2643 214920619 214918043 0.000000e+00 3145
11 TraesCS2B01G482400 chr5D 91.935 186 14 1 2844 3029 214917923 214917739 3.000000e-65 259
12 TraesCS2B01G482400 chr2A 92.789 1997 93 22 695 2678 706994904 706996862 0.000000e+00 2843
13 TraesCS2B01G482400 chr2A 93.677 427 14 6 284 697 706994352 706994778 7.130000e-176 627
14 TraesCS2B01G482400 chr2A 91.919 396 19 5 2634 3029 706996788 706997170 2.660000e-150 542
15 TraesCS2B01G482400 chr2A 92.025 326 15 6 1 320 706994033 706994353 5.960000e-122 448
16 TraesCS2B01G482400 chr4B 86.897 435 46 7 1001 1431 135211405 135211832 7.600000e-131 477
17 TraesCS2B01G482400 chr4B 87.234 141 10 7 498 631 135210867 135211006 1.450000e-33 154
18 TraesCS2B01G482400 chr4A 86.437 435 48 7 1001 1431 483951403 483950976 1.640000e-127 466
19 TraesCS2B01G482400 chr4D 83.865 502 58 16 939 1431 95781029 95781516 9.900000e-125 457
20 TraesCS2B01G482400 chr4D 87.234 141 10 7 498 631 95780563 95780702 1.450000e-33 154
21 TraesCS2B01G482400 chrUn 91.935 186 14 1 2844 3029 476965542 476965726 3.000000e-65 259
22 TraesCS2B01G482400 chr3B 94.118 85 5 0 547 631 327795846 327795762 2.450000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G482400 chr2B 680192945 680195973 3028 False 1932.666667 5594 93.4960 1 3029 3 chr2B.!!$F1 3028
1 TraesCS2B01G482400 chr2D 567476275 567479269 2994 False 2188.500000 3771 93.3015 1 3029 2 chr2D.!!$F1 3028
2 TraesCS2B01G482400 chr5B 230246519 230249466 2947 True 1718.000000 3177 90.3130 3 3029 2 chr5B.!!$R1 3026
3 TraesCS2B01G482400 chr5A 282585993 282588885 2892 True 1704.000000 3147 84.2855 3 3029 2 chr5A.!!$R1 3026
4 TraesCS2B01G482400 chr5D 214917739 214920619 2880 True 1702.000000 3145 90.3120 3 3029 2 chr5D.!!$R1 3026
5 TraesCS2B01G482400 chr2A 706994033 706997170 3137 False 1115.000000 2843 92.6025 1 3029 4 chr2A.!!$F1 3028
6 TraesCS2B01G482400 chr4B 135210867 135211832 965 False 315.500000 477 87.0655 498 1431 2 chr4B.!!$F1 933
7 TraesCS2B01G482400 chr4D 95780563 95781516 953 False 305.500000 457 85.5495 498 1431 2 chr4D.!!$F1 933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 1211 0.04394 ATTCCTGCCTCTCCACTCCT 59.956 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2149 2491 0.193574 TCCACTTCCTCTTCCAGGGT 59.806 55.0 0.0 0.0 43.67 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 2.886523 CAATGAGACAGGCCTGACAAAA 59.113 45.455 39.19 21.20 0.00 2.44
98 100 6.263516 ACCTTGATTGTGTTGAATCTGATG 57.736 37.500 0.00 0.00 34.04 3.07
115 117 5.809001 TCTGATGTCAAGAAAATAGCTGGT 58.191 37.500 0.00 0.00 0.00 4.00
314 336 9.599866 CTCCATGTCTATACAAGTTACAAATGA 57.400 33.333 0.00 0.00 39.58 2.57
320 378 8.552034 GTCTATACAAGTTACAAATGAGATGGC 58.448 37.037 0.00 0.00 0.00 4.40
373 431 1.949257 CCACGACTTTCTTGCACCC 59.051 57.895 0.00 0.00 0.00 4.61
667 815 9.277783 CCATATATTCTAACCTTCACCTTTGAG 57.722 37.037 0.00 0.00 31.71 3.02
739 1015 2.489329 ACCCACTTCAAGATCAAATGCG 59.511 45.455 0.00 0.00 0.00 4.73
797 1098 2.901338 AGACACTAGCTAGACACCCA 57.099 50.000 27.45 0.00 0.00 4.51
815 1116 2.948979 CCCACAAGCTGTGTAAAGTTCA 59.051 45.455 13.06 0.00 46.45 3.18
866 1167 5.988287 TGACATATGCATGGTTCTCTACAA 58.012 37.500 10.16 0.00 36.39 2.41
874 1175 4.772434 CATGGTTCTCTACAAAACACACG 58.228 43.478 0.00 0.00 0.00 4.49
881 1182 0.733729 TACAAAACACACGCCACCAC 59.266 50.000 0.00 0.00 0.00 4.16
899 1206 0.343372 ACCCTATTCCTGCCTCTCCA 59.657 55.000 0.00 0.00 0.00 3.86
902 1209 1.691434 CCTATTCCTGCCTCTCCACTC 59.309 57.143 0.00 0.00 0.00 3.51
903 1210 1.691434 CTATTCCTGCCTCTCCACTCC 59.309 57.143 0.00 0.00 0.00 3.85
904 1211 0.043940 ATTCCTGCCTCTCCACTCCT 59.956 55.000 0.00 0.00 0.00 3.69
905 1212 0.616111 TTCCTGCCTCTCCACTCCTC 60.616 60.000 0.00 0.00 0.00 3.71
906 1213 2.063378 CCTGCCTCTCCACTCCTCC 61.063 68.421 0.00 0.00 0.00 4.30
907 1214 2.039624 TGCCTCTCCACTCCTCCC 59.960 66.667 0.00 0.00 0.00 4.30
908 1215 2.766229 GCCTCTCCACTCCTCCCC 60.766 72.222 0.00 0.00 0.00 4.81
909 1216 3.114390 CCTCTCCACTCCTCCCCT 58.886 66.667 0.00 0.00 0.00 4.79
910 1217 1.075600 CCTCTCCACTCCTCCCCTC 60.076 68.421 0.00 0.00 0.00 4.30
911 1218 1.589399 CCTCTCCACTCCTCCCCTCT 61.589 65.000 0.00 0.00 0.00 3.69
912 1219 0.106217 CTCTCCACTCCTCCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
913 1220 1.075600 CTCCACTCCTCCCCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
914 1221 2.041405 CCACTCCTCCCCTCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
915 1222 2.041405 CACTCCTCCCCTCTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
950 1257 0.396974 TCCACTGCCCAACTTTTGCT 60.397 50.000 0.00 0.00 0.00 3.91
962 1273 6.294508 GCCCAACTTTTGCTATAGACAAGAAA 60.295 38.462 3.21 0.04 0.00 2.52
963 1274 7.308435 CCCAACTTTTGCTATAGACAAGAAAG 58.692 38.462 3.21 10.61 0.00 2.62
965 1276 8.567948 CCAACTTTTGCTATAGACAAGAAAGAA 58.432 33.333 18.21 8.33 0.00 2.52
967 1278 8.100508 ACTTTTGCTATAGACAAGAAAGAACC 57.899 34.615 18.21 0.00 0.00 3.62
968 1279 7.939588 ACTTTTGCTATAGACAAGAAAGAACCT 59.060 33.333 18.21 0.00 0.00 3.50
970 1281 9.787435 TTTTGCTATAGACAAGAAAGAACCTAA 57.213 29.630 3.21 0.00 0.00 2.69
971 1282 9.436957 TTTGCTATAGACAAGAAAGAACCTAAG 57.563 33.333 3.21 0.00 0.00 2.18
996 1307 1.827969 GTAGCTTTCCTCCAGAGCAGA 59.172 52.381 0.00 0.00 38.85 4.26
1017 1328 1.410004 CAATGGCCATGCATCCTCTT 58.590 50.000 21.63 0.00 0.00 2.85
1018 1329 1.068588 CAATGGCCATGCATCCTCTTG 59.931 52.381 21.63 7.31 0.00 3.02
1069 1380 1.066716 GGGTAGCCATGTACACGAACA 60.067 52.381 5.96 0.00 0.00 3.18
1095 1409 0.111832 ACCACCACCAGTACGAGAGA 59.888 55.000 0.00 0.00 0.00 3.10
1114 1428 2.564947 AGAGAGCACCTGTTCGAGAAAT 59.435 45.455 0.00 0.00 0.00 2.17
1131 1445 0.321653 AATCCTTGACGCCCAGTGAC 60.322 55.000 0.00 0.00 0.00 3.67
1554 1868 2.943265 AGCCCTGCCAACTCCCAT 60.943 61.111 0.00 0.00 0.00 4.00
1590 1904 0.108472 TGGAGCAAGATCACAGCGAG 60.108 55.000 0.00 0.00 0.00 5.03
1662 1984 5.739959 TGCAACATAACTTAGATGCAGGTA 58.260 37.500 0.00 0.00 38.73 3.08
1665 1987 6.018669 GCAACATAACTTAGATGCAGGTACTC 60.019 42.308 0.00 0.00 34.60 2.59
1926 2263 4.821805 ACTGTAAACATCACCAAGTTCCAG 59.178 41.667 0.00 0.00 34.98 3.86
1927 2264 4.787551 TGTAAACATCACCAAGTTCCAGT 58.212 39.130 0.00 0.00 0.00 4.00
1928 2265 5.197451 TGTAAACATCACCAAGTTCCAGTT 58.803 37.500 0.00 0.00 0.00 3.16
1929 2266 4.654091 AAACATCACCAAGTTCCAGTTG 57.346 40.909 0.00 0.00 0.00 3.16
1930 2267 1.956477 ACATCACCAAGTTCCAGTTGC 59.044 47.619 0.00 0.00 0.00 4.17
1931 2268 1.955778 CATCACCAAGTTCCAGTTGCA 59.044 47.619 0.00 0.00 0.00 4.08
1940 2277 5.278907 CCAAGTTCCAGTTGCATTCATACAA 60.279 40.000 0.00 0.00 0.00 2.41
2112 2454 1.144936 CACCAGCCAGCCTACTAGC 59.855 63.158 0.00 0.00 0.00 3.42
2113 2455 1.002274 ACCAGCCAGCCTACTAGCT 59.998 57.895 0.00 0.00 41.98 3.32
2114 2456 0.261991 ACCAGCCAGCCTACTAGCTA 59.738 55.000 0.00 0.00 38.98 3.32
2115 2457 1.133009 ACCAGCCAGCCTACTAGCTAT 60.133 52.381 0.00 0.00 38.98 2.97
2149 2491 3.817084 CTGAGTGACAGGCTTGAATTGAA 59.183 43.478 1.40 0.00 42.39 2.69
2152 2494 2.029918 GTGACAGGCTTGAATTGAACCC 60.030 50.000 1.40 0.00 0.00 4.11
2158 2510 2.232208 GGCTTGAATTGAACCCTGGAAG 59.768 50.000 0.00 0.00 0.00 3.46
2165 2517 2.118403 TGAACCCTGGAAGAGGAAGT 57.882 50.000 0.00 0.00 46.33 3.01
2328 2685 2.686405 GGAAACGTCAGGTTGAAAAGGT 59.314 45.455 0.00 0.00 39.30 3.50
2335 2692 2.512056 TCAGGTTGAAAAGGTGAGGGAA 59.488 45.455 0.00 0.00 0.00 3.97
2336 2693 2.887152 CAGGTTGAAAAGGTGAGGGAAG 59.113 50.000 0.00 0.00 0.00 3.46
2337 2694 2.514160 AGGTTGAAAAGGTGAGGGAAGT 59.486 45.455 0.00 0.00 0.00 3.01
2338 2695 2.623416 GGTTGAAAAGGTGAGGGAAGTG 59.377 50.000 0.00 0.00 0.00 3.16
2339 2696 2.623416 GTTGAAAAGGTGAGGGAAGTGG 59.377 50.000 0.00 0.00 0.00 4.00
2380 2737 5.063312 GTGACACACATGAAAAACAAAAGGG 59.937 40.000 0.00 0.00 34.08 3.95
2443 2817 2.067365 ACTGGGTCCAAGAACAAACC 57.933 50.000 0.00 0.00 0.00 3.27
2594 2978 9.727627 GCAATCAATTGGTTTAATGTTTTCAAA 57.272 25.926 0.00 0.00 38.21 2.69
2684 3071 7.671495 AAAAATTCAATGCATTCACCTTACC 57.329 32.000 9.53 0.00 0.00 2.85
2685 3072 6.610075 AAATTCAATGCATTCACCTTACCT 57.390 33.333 9.53 0.00 0.00 3.08
2686 3073 6.610075 AATTCAATGCATTCACCTTACCTT 57.390 33.333 9.53 0.00 0.00 3.50
2687 3074 5.643379 TTCAATGCATTCACCTTACCTTC 57.357 39.130 9.53 0.00 0.00 3.46
2688 3075 4.922206 TCAATGCATTCACCTTACCTTCT 58.078 39.130 9.53 0.00 0.00 2.85
2689 3076 4.943705 TCAATGCATTCACCTTACCTTCTC 59.056 41.667 9.53 0.00 0.00 2.87
2690 3077 4.574674 ATGCATTCACCTTACCTTCTCA 57.425 40.909 0.00 0.00 0.00 3.27
2691 3078 4.365514 TGCATTCACCTTACCTTCTCAA 57.634 40.909 0.00 0.00 0.00 3.02
2692 3079 4.724399 TGCATTCACCTTACCTTCTCAAA 58.276 39.130 0.00 0.00 0.00 2.69
2693 3080 5.136828 TGCATTCACCTTACCTTCTCAAAA 58.863 37.500 0.00 0.00 0.00 2.44
2694 3081 5.596361 TGCATTCACCTTACCTTCTCAAAAA 59.404 36.000 0.00 0.00 0.00 1.94
2788 3241 5.119279 CAGTTCTCACCGTCTCTAAACAATG 59.881 44.000 0.00 0.00 0.00 2.82
2833 3286 2.425143 TGACAGATGCCAAAGGATCC 57.575 50.000 2.48 2.48 0.00 3.36
2839 3292 5.332743 ACAGATGCCAAAGGATCCTTAAAA 58.667 37.500 27.29 13.56 34.84 1.52
2955 3408 3.335729 GGGAAGGAAAGGCCCGGA 61.336 66.667 0.73 0.00 37.37 5.14
2961 3414 0.840722 AGGAAAGGCCCGGAAGAAGA 60.841 55.000 0.73 0.00 37.37 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 5.771666 ACATCAGATTCAACACAATCAAGGT 59.228 36.000 0.00 0.00 35.51 3.50
115 117 5.891551 TCATTCACTATGGAGTACACTAGCA 59.108 40.000 0.00 0.00 33.32 3.49
263 283 6.371278 GTTCCCTAGGGACCGATGATATATA 58.629 44.000 31.18 8.02 45.11 0.86
264 284 5.209659 GTTCCCTAGGGACCGATGATATAT 58.790 45.833 31.18 0.00 45.11 0.86
314 336 2.978156 TTTCCAACAAGAGGCCATCT 57.022 45.000 5.01 1.58 41.27 2.90
320 378 6.039717 TCAGAAACTCAATTTCCAACAAGAGG 59.960 38.462 0.00 0.00 46.94 3.69
373 431 3.872459 ATTTCTATCTGGCCTTGGGAG 57.128 47.619 3.32 0.00 0.00 4.30
667 815 3.829026 AGAAGAATCAAAGTGAAAGGGCC 59.171 43.478 0.00 0.00 0.00 5.80
797 1098 5.393027 CCAAGTTGAACTTTACACAGCTTGT 60.393 40.000 8.03 6.74 44.82 3.16
866 1167 1.985460 TAGGGTGGTGGCGTGTGTTT 61.985 55.000 0.00 0.00 0.00 2.83
874 1175 1.453928 GCAGGAATAGGGTGGTGGC 60.454 63.158 0.00 0.00 0.00 5.01
881 1182 0.761802 GTGGAGAGGCAGGAATAGGG 59.238 60.000 0.00 0.00 0.00 3.53
899 1206 2.204705 AGGGGAGAGGGGAGGAGT 60.205 66.667 0.00 0.00 0.00 3.85
902 1209 3.039526 AGGAGGGGAGAGGGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
903 1210 1.598856 AAGAGGAGGGGAGAGGGGAG 61.599 65.000 0.00 0.00 0.00 4.30
904 1211 1.550374 AAGAGGAGGGGAGAGGGGA 60.550 63.158 0.00 0.00 0.00 4.81
905 1212 1.074850 GAAGAGGAGGGGAGAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
906 1213 0.105709 GAGAAGAGGAGGGGAGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
907 1214 0.933700 AGAGAAGAGGAGGGGAGAGG 59.066 60.000 0.00 0.00 0.00 3.69
908 1215 2.244769 AGAAGAGAAGAGGAGGGGAGAG 59.755 54.545 0.00 0.00 0.00 3.20
909 1216 2.243736 GAGAAGAGAAGAGGAGGGGAGA 59.756 54.545 0.00 0.00 0.00 3.71
910 1217 2.244769 AGAGAAGAGAAGAGGAGGGGAG 59.755 54.545 0.00 0.00 0.00 4.30
911 1218 2.243736 GAGAGAAGAGAAGAGGAGGGGA 59.756 54.545 0.00 0.00 0.00 4.81
912 1219 2.666317 GAGAGAAGAGAAGAGGAGGGG 58.334 57.143 0.00 0.00 0.00 4.79
913 1220 2.024464 TGGAGAGAAGAGAAGAGGAGGG 60.024 54.545 0.00 0.00 0.00 4.30
914 1221 3.023832 GTGGAGAGAAGAGAAGAGGAGG 58.976 54.545 0.00 0.00 0.00 4.30
915 1222 3.696051 CAGTGGAGAGAAGAGAAGAGGAG 59.304 52.174 0.00 0.00 0.00 3.69
950 1257 8.915036 CCTAGCTTAGGTTCTTTCTTGTCTATA 58.085 37.037 0.00 0.00 41.18 1.31
996 1307 1.075525 AGGATGCATGGCCATTGCT 60.076 52.632 28.58 18.96 37.74 3.91
1069 1380 2.756760 CGTACTGGTGGTGGTAGTGTAT 59.243 50.000 0.00 0.00 0.00 2.29
1095 1409 2.354203 GGATTTCTCGAACAGGTGCTCT 60.354 50.000 0.00 0.00 0.00 4.09
1114 1428 2.741092 GTCACTGGGCGTCAAGGA 59.259 61.111 0.00 0.00 0.00 3.36
1131 1445 2.620112 CCTGTTGAGCTTGCCCACG 61.620 63.158 0.00 0.00 0.00 4.94
1200 1514 1.913762 CTTGTCACCGGGGGAGTCT 60.914 63.158 2.42 0.00 0.00 3.24
1518 1832 3.177228 GCTGGTAGGGTATGATCCTGAT 58.823 50.000 0.00 0.00 35.92 2.90
1662 1984 8.321353 TGGTGTAAGAGATATGTGATTTTGAGT 58.679 33.333 0.00 0.00 0.00 3.41
1665 1987 9.941664 GAATGGTGTAAGAGATATGTGATTTTG 57.058 33.333 0.00 0.00 0.00 2.44
1774 2104 2.515057 TTGACGCCAAACAGCCGT 60.515 55.556 0.00 0.00 37.99 5.68
1783 2113 2.338620 CAGTCGAGGTTGACGCCA 59.661 61.111 0.00 0.00 43.70 5.69
2007 2348 1.181098 ATGAACTGCCCCTGTTGTGC 61.181 55.000 0.00 0.00 0.00 4.57
2085 2427 1.599047 CTGGCTGGTGGGAGTAGTG 59.401 63.158 0.00 0.00 0.00 2.74
2112 2454 4.036262 GTCACTCAGTCCAGAGTAGCATAG 59.964 50.000 0.00 0.00 46.65 2.23
2113 2455 3.948473 GTCACTCAGTCCAGAGTAGCATA 59.052 47.826 0.00 0.00 46.65 3.14
2114 2456 2.757868 GTCACTCAGTCCAGAGTAGCAT 59.242 50.000 0.00 0.00 46.65 3.79
2115 2457 2.163509 GTCACTCAGTCCAGAGTAGCA 58.836 52.381 0.00 0.00 46.65 3.49
2149 2491 0.193574 TCCACTTCCTCTTCCAGGGT 59.806 55.000 0.00 0.00 43.67 4.34
2152 2494 2.289945 CCACTTCCACTTCCTCTTCCAG 60.290 54.545 0.00 0.00 0.00 3.86
2158 2510 3.369997 GGATCTTCCACTTCCACTTCCTC 60.370 52.174 0.00 0.00 36.28 3.71
2165 2517 2.348472 ACAAGGGATCTTCCACTTCCA 58.652 47.619 0.00 0.00 38.64 3.53
2231 2583 5.009110 GGAAGACCAGAAGAAAGAAAACAGG 59.991 44.000 0.00 0.00 35.97 4.00
2232 2584 5.590259 TGGAAGACCAGAAGAAAGAAAACAG 59.410 40.000 0.00 0.00 41.77 3.16
2266 2618 1.514087 GCCCCGTACTGTGATCGAA 59.486 57.895 0.00 0.00 0.00 3.71
2313 2670 2.158667 TCCCTCACCTTTTCAACCTGAC 60.159 50.000 0.00 0.00 0.00 3.51
2328 2685 2.859404 TCTATCTCTCCCACTTCCCTCA 59.141 50.000 0.00 0.00 0.00 3.86
2335 2692 2.111613 CCATCCCTCTATCTCTCCCACT 59.888 54.545 0.00 0.00 0.00 4.00
2336 2693 2.158234 ACCATCCCTCTATCTCTCCCAC 60.158 54.545 0.00 0.00 0.00 4.61
2337 2694 2.156425 ACCATCCCTCTATCTCTCCCA 58.844 52.381 0.00 0.00 0.00 4.37
2338 2695 2.110899 TCACCATCCCTCTATCTCTCCC 59.889 54.545 0.00 0.00 0.00 4.30
2339 2696 3.161866 GTCACCATCCCTCTATCTCTCC 58.838 54.545 0.00 0.00 0.00 3.71
2398 2755 8.822652 ACATACAGATGACACATACATACATG 57.177 34.615 0.00 0.00 36.48 3.21
2399 2756 9.914131 GTACATACAGATGACACATACATACAT 57.086 33.333 0.00 0.00 36.48 2.29
2443 2817 5.922053 TGGAGAGGATACATCAACTTCATG 58.078 41.667 0.00 0.00 41.41 3.07
2594 2978 8.316214 AGTTAAGGTGAATGCATTGAATTTGAT 58.684 29.630 18.59 0.00 0.00 2.57
2662 3049 6.610075 AGGTAAGGTGAATGCATTGAATTT 57.390 33.333 18.59 8.84 0.00 1.82
2663 3050 6.438425 AGAAGGTAAGGTGAATGCATTGAATT 59.562 34.615 18.59 9.56 0.00 2.17
2664 3051 5.954150 AGAAGGTAAGGTGAATGCATTGAAT 59.046 36.000 18.59 0.92 0.00 2.57
2665 3052 5.324409 AGAAGGTAAGGTGAATGCATTGAA 58.676 37.500 18.59 1.50 0.00 2.69
2666 3053 4.922206 AGAAGGTAAGGTGAATGCATTGA 58.078 39.130 18.59 5.30 0.00 2.57
2667 3054 4.701651 TGAGAAGGTAAGGTGAATGCATTG 59.298 41.667 18.59 0.00 0.00 2.82
2668 3055 4.922206 TGAGAAGGTAAGGTGAATGCATT 58.078 39.130 12.83 12.83 0.00 3.56
2669 3056 4.574674 TGAGAAGGTAAGGTGAATGCAT 57.425 40.909 0.00 0.00 0.00 3.96
2670 3057 4.365514 TTGAGAAGGTAAGGTGAATGCA 57.634 40.909 0.00 0.00 0.00 3.96
2671 3058 5.705609 TTTTGAGAAGGTAAGGTGAATGC 57.294 39.130 0.00 0.00 0.00 3.56
2692 3079 9.992910 GAATGCATTGAGTTTTTCTTTTCTTTT 57.007 25.926 18.59 0.00 0.00 2.27
2693 3080 9.165035 TGAATGCATTGAGTTTTTCTTTTCTTT 57.835 25.926 18.59 0.00 0.00 2.52
2694 3081 8.721019 TGAATGCATTGAGTTTTTCTTTTCTT 57.279 26.923 18.59 0.00 0.00 2.52
2695 3082 8.897872 ATGAATGCATTGAGTTTTTCTTTTCT 57.102 26.923 18.59 0.00 0.00 2.52
2697 3084 9.545105 TGTATGAATGCATTGAGTTTTTCTTTT 57.455 25.926 18.59 0.00 35.94 2.27
2698 3085 8.981647 GTGTATGAATGCATTGAGTTTTTCTTT 58.018 29.630 18.59 0.00 35.94 2.52
2701 3088 7.092716 AGGTGTATGAATGCATTGAGTTTTTC 58.907 34.615 18.59 0.52 35.94 2.29
2707 3094 7.741027 ATCTTAGGTGTATGAATGCATTGAG 57.259 36.000 18.59 0.00 35.94 3.02
2788 3241 1.671979 GCCATAACGTTACCCTTCCC 58.328 55.000 10.81 0.00 0.00 3.97
2839 3292 1.421268 TCACCTGTGGCTCATCACTTT 59.579 47.619 0.00 0.00 38.40 2.66
2848 3301 3.321648 TCGGCATCACCTGTGGCT 61.322 61.111 0.00 0.00 39.73 4.75
2955 3408 3.567164 CACTTGCACACCTCAATCTTCTT 59.433 43.478 0.00 0.00 0.00 2.52
2961 3414 1.143684 AGACCACTTGCACACCTCAAT 59.856 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.