Multiple sequence alignment - TraesCS2B01G482000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G482000 chr2B 100.000 5102 0 0 1 5102 680040748 680045849 0.000000e+00 9422.0
1 TraesCS2B01G482000 chr2B 88.406 207 22 2 1824 2029 680042355 680042560 1.100000e-61 248.0
2 TraesCS2B01G482000 chr2B 88.406 207 22 2 1608 1813 680042571 680042776 1.100000e-61 248.0
3 TraesCS2B01G482000 chr2A 91.999 4012 192 51 600 4543 706889287 706893237 0.000000e+00 5511.0
4 TraesCS2B01G482000 chr2A 88.427 337 20 13 4559 4885 706893221 706893548 6.190000e-104 388.0
5 TraesCS2B01G482000 chr2A 88.889 207 22 1 1824 2029 706890269 706890475 2.360000e-63 254.0
6 TraesCS2B01G482000 chr2A 86.996 223 25 4 1608 1829 706890486 706890705 1.100000e-61 248.0
7 TraesCS2B01G482000 chr2D 92.807 3295 164 29 1169 4427 567043501 567046758 0.000000e+00 4704.0
8 TraesCS2B01G482000 chr2D 91.089 909 29 20 279 1172 567042662 567043533 0.000000e+00 1182.0
9 TraesCS2B01G482000 chr2D 86.905 336 32 8 4559 4885 567046974 567047306 2.900000e-97 366.0
10 TraesCS2B01G482000 chr2D 86.603 209 24 3 1826 2033 567043950 567044155 1.430000e-55 228.0
11 TraesCS2B01G482000 chr7A 82.308 130 23 0 3631 3760 440352055 440351926 4.180000e-21 113.0
12 TraesCS2B01G482000 chr7D 81.538 130 24 0 3631 3760 389459018 389458889 1.940000e-19 108.0
13 TraesCS2B01G482000 chr7B 81.538 130 24 0 3631 3760 384767569 384767440 1.940000e-19 108.0
14 TraesCS2B01G482000 chr5D 100.000 33 0 0 84 116 211217773 211217741 1.530000e-05 62.1
15 TraesCS2B01G482000 chr5D 100.000 32 0 0 85 116 546107754 546107785 5.520000e-05 60.2
16 TraesCS2B01G482000 chr5D 100.000 32 0 0 85 116 546232883 546232914 5.520000e-05 60.2
17 TraesCS2B01G482000 chr5D 96.875 32 1 0 85 116 546183635 546183666 3.000000e-03 54.7
18 TraesCS2B01G482000 chr4A 100.000 33 0 0 84 116 622886798 622886766 1.530000e-05 62.1
19 TraesCS2B01G482000 chr4A 100.000 33 0 0 84 116 622965243 622965211 1.530000e-05 62.1
20 TraesCS2B01G482000 chr4A 100.000 32 0 0 85 116 622805765 622805734 5.520000e-05 60.2
21 TraesCS2B01G482000 chr5B 100.000 32 0 0 85 116 689402412 689402443 5.520000e-05 60.2
22 TraesCS2B01G482000 chr5B 100.000 31 0 0 85 115 689410753 689410783 1.980000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G482000 chr2B 680040748 680045849 5101 False 3306.00 9422 92.270667 1 5102 3 chr2B.!!$F1 5101
1 TraesCS2B01G482000 chr2A 706889287 706893548 4261 False 1600.25 5511 89.077750 600 4885 4 chr2A.!!$F1 4285
2 TraesCS2B01G482000 chr2D 567042662 567047306 4644 False 1620.00 4704 89.351000 279 4885 4 chr2D.!!$F1 4606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.030773 TACACATCTCCTCATCGCGC 59.969 55.000 0.00 0.00 0.00 6.86 F
1144 1164 0.109272 TGCGTCTGTTCTCATCGACC 60.109 55.000 0.00 0.00 0.00 4.79 F
1161 1181 0.402272 ACCCAGTTACCACCAGGGAA 60.402 55.000 2.29 0.00 39.98 3.97 F
1495 1523 0.446222 GACGCAAGCCTAATTTCGCA 59.554 50.000 0.00 0.00 45.62 5.10 F
1756 1784 1.912043 AGGCAGCTAGAAGGAACATGT 59.088 47.619 0.00 0.00 0.00 3.21 F
3501 3544 1.253116 CGTGTTTTGATGCAGCATCG 58.747 50.000 26.79 12.58 43.14 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1165 1185 0.109153 GGTGGTAACCGGGTCAAGTT 59.891 55.000 6.32 0.00 36.51 2.66 R
2088 2117 0.989164 TCTGTACGAAATCGCTTGCG 59.011 50.000 8.87 8.87 44.43 4.85 R
2925 2968 5.349543 GTCAAGAATGGCAAAAATGGATGAC 59.650 40.000 0.00 0.00 0.00 3.06 R
3199 3242 4.212425 TGGCAACACGAGTTATTTACTGTG 59.788 41.667 0.00 0.00 46.17 3.66 R
3592 3638 1.421646 CCTAAAGGGGGCAGATCGAAT 59.578 52.381 0.00 0.00 0.00 3.34 R
4863 5074 0.107654 ACCATTCGTAAGGGCAGAGC 60.108 55.000 0.00 0.00 35.24 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.821589 CCCGCCGAGCTTCCTGTC 62.822 72.222 0.00 0.00 0.00 3.51
34 35 3.764466 CCGCCGAGCTTCCTGTCT 61.764 66.667 0.00 0.00 0.00 3.41
35 36 2.415608 CCGCCGAGCTTCCTGTCTA 61.416 63.158 0.00 0.00 0.00 2.59
36 37 1.064946 CGCCGAGCTTCCTGTCTAG 59.935 63.158 0.00 0.00 0.00 2.43
37 38 1.227118 GCCGAGCTTCCTGTCTAGC 60.227 63.158 0.00 0.00 37.66 3.42
41 42 2.499214 AGCTTCCTGTCTAGCTCCG 58.501 57.895 0.00 0.00 44.05 4.63
42 43 1.227118 GCTTCCTGTCTAGCTCCGC 60.227 63.158 0.00 0.00 34.57 5.54
43 44 1.949847 GCTTCCTGTCTAGCTCCGCA 61.950 60.000 0.00 0.00 34.57 5.69
44 45 0.749649 CTTCCTGTCTAGCTCCGCAT 59.250 55.000 0.00 0.00 0.00 4.73
45 46 1.137872 CTTCCTGTCTAGCTCCGCATT 59.862 52.381 0.00 0.00 0.00 3.56
46 47 0.461548 TCCTGTCTAGCTCCGCATTG 59.538 55.000 0.00 0.00 0.00 2.82
47 48 0.461548 CCTGTCTAGCTCCGCATTGA 59.538 55.000 0.00 0.00 0.00 2.57
48 49 1.565305 CTGTCTAGCTCCGCATTGAC 58.435 55.000 0.00 0.00 0.00 3.18
49 50 0.894835 TGTCTAGCTCCGCATTGACA 59.105 50.000 0.00 0.00 34.27 3.58
50 51 1.482182 TGTCTAGCTCCGCATTGACAT 59.518 47.619 0.00 0.00 32.82 3.06
51 52 1.863454 GTCTAGCTCCGCATTGACATG 59.137 52.381 0.00 0.00 0.00 3.21
60 61 1.656652 GCATTGACATGCGTACCTCT 58.343 50.000 0.00 0.00 46.45 3.69
61 62 1.328680 GCATTGACATGCGTACCTCTG 59.671 52.381 0.00 0.00 46.45 3.35
62 63 2.892374 CATTGACATGCGTACCTCTGA 58.108 47.619 0.00 0.00 0.00 3.27
63 64 3.261580 CATTGACATGCGTACCTCTGAA 58.738 45.455 0.00 0.00 0.00 3.02
64 65 3.394674 TTGACATGCGTACCTCTGAAA 57.605 42.857 0.00 0.00 0.00 2.69
65 66 3.394674 TGACATGCGTACCTCTGAAAA 57.605 42.857 0.00 0.00 0.00 2.29
66 67 3.734463 TGACATGCGTACCTCTGAAAAA 58.266 40.909 0.00 0.00 0.00 1.94
105 106 7.551035 TTTTTGGACCATTTCTTGATTTGTG 57.449 32.000 0.00 0.00 0.00 3.33
106 107 4.255833 TGGACCATTTCTTGATTTGTGC 57.744 40.909 0.00 0.00 0.00 4.57
107 108 3.244976 GGACCATTTCTTGATTTGTGCG 58.755 45.455 0.00 0.00 0.00 5.34
108 109 3.305335 GGACCATTTCTTGATTTGTGCGT 60.305 43.478 0.00 0.00 0.00 5.24
109 110 3.641648 ACCATTTCTTGATTTGTGCGTG 58.358 40.909 0.00 0.00 0.00 5.34
110 111 3.068024 ACCATTTCTTGATTTGTGCGTGT 59.932 39.130 0.00 0.00 0.00 4.49
111 112 3.670055 CCATTTCTTGATTTGTGCGTGTC 59.330 43.478 0.00 0.00 0.00 3.67
112 113 4.289342 CATTTCTTGATTTGTGCGTGTCA 58.711 39.130 0.00 0.00 0.00 3.58
113 114 4.566545 TTTCTTGATTTGTGCGTGTCAT 57.433 36.364 0.00 0.00 0.00 3.06
114 115 3.811722 TCTTGATTTGTGCGTGTCATC 57.188 42.857 0.00 0.00 0.00 2.92
115 116 2.483877 TCTTGATTTGTGCGTGTCATCC 59.516 45.455 0.00 0.00 0.00 3.51
116 117 1.889545 TGATTTGTGCGTGTCATCCA 58.110 45.000 0.00 0.00 0.00 3.41
117 118 2.225467 TGATTTGTGCGTGTCATCCAA 58.775 42.857 0.00 0.00 0.00 3.53
118 119 2.031245 TGATTTGTGCGTGTCATCCAAC 60.031 45.455 0.00 0.00 0.00 3.77
119 120 1.674359 TTTGTGCGTGTCATCCAACT 58.326 45.000 0.00 0.00 0.00 3.16
120 121 0.943673 TTGTGCGTGTCATCCAACTG 59.056 50.000 0.00 0.00 0.00 3.16
121 122 0.179059 TGTGCGTGTCATCCAACTGT 60.179 50.000 0.00 0.00 0.00 3.55
122 123 0.512952 GTGCGTGTCATCCAACTGTC 59.487 55.000 0.00 0.00 0.00 3.51
123 124 0.392706 TGCGTGTCATCCAACTGTCT 59.607 50.000 0.00 0.00 0.00 3.41
124 125 1.202639 TGCGTGTCATCCAACTGTCTT 60.203 47.619 0.00 0.00 0.00 3.01
125 126 1.195448 GCGTGTCATCCAACTGTCTTG 59.805 52.381 0.00 0.00 0.00 3.02
126 127 1.195448 CGTGTCATCCAACTGTCTTGC 59.805 52.381 0.00 0.00 0.00 4.01
127 128 1.537202 GTGTCATCCAACTGTCTTGCC 59.463 52.381 0.00 0.00 0.00 4.52
128 129 0.798776 GTCATCCAACTGTCTTGCCG 59.201 55.000 0.00 0.00 0.00 5.69
129 130 0.321564 TCATCCAACTGTCTTGCCGG 60.322 55.000 0.00 0.00 0.00 6.13
130 131 0.606401 CATCCAACTGTCTTGCCGGT 60.606 55.000 1.90 0.00 0.00 5.28
131 132 0.981183 ATCCAACTGTCTTGCCGGTA 59.019 50.000 1.90 0.00 0.00 4.02
132 133 0.981183 TCCAACTGTCTTGCCGGTAT 59.019 50.000 1.90 0.00 0.00 2.73
133 134 1.066430 TCCAACTGTCTTGCCGGTATC 60.066 52.381 1.90 0.00 0.00 2.24
134 135 1.338674 CCAACTGTCTTGCCGGTATCA 60.339 52.381 1.90 0.00 0.00 2.15
135 136 1.732259 CAACTGTCTTGCCGGTATCAC 59.268 52.381 1.90 0.00 0.00 3.06
136 137 0.249398 ACTGTCTTGCCGGTATCACC 59.751 55.000 1.90 0.00 34.05 4.02
137 138 0.462047 CTGTCTTGCCGGTATCACCC 60.462 60.000 1.90 0.00 33.75 4.61
138 139 1.195442 TGTCTTGCCGGTATCACCCA 61.195 55.000 1.90 0.00 33.75 4.51
139 140 0.743345 GTCTTGCCGGTATCACCCAC 60.743 60.000 1.90 0.00 33.75 4.61
140 141 1.451387 CTTGCCGGTATCACCCACC 60.451 63.158 1.90 0.00 33.75 4.61
145 146 3.959462 GGTATCACCCACCGGCTA 58.041 61.111 0.00 0.00 30.04 3.93
146 147 2.448749 GGTATCACCCACCGGCTAT 58.551 57.895 0.00 0.00 30.04 2.97
147 148 1.636148 GGTATCACCCACCGGCTATA 58.364 55.000 0.00 0.00 30.04 1.31
148 149 2.185387 GGTATCACCCACCGGCTATAT 58.815 52.381 0.00 0.00 30.04 0.86
149 150 2.093658 GGTATCACCCACCGGCTATATG 60.094 54.545 0.00 0.00 30.04 1.78
150 151 0.324943 ATCACCCACCGGCTATATGC 59.675 55.000 0.00 0.00 41.94 3.14
159 160 2.359975 GCTATATGCCGCCACCCC 60.360 66.667 0.00 0.00 35.15 4.95
160 161 2.351276 CTATATGCCGCCACCCCC 59.649 66.667 0.00 0.00 0.00 5.40
161 162 2.122144 TATATGCCGCCACCCCCT 60.122 61.111 0.00 0.00 0.00 4.79
162 163 2.185310 CTATATGCCGCCACCCCCTC 62.185 65.000 0.00 0.00 0.00 4.30
163 164 2.974435 TATATGCCGCCACCCCCTCA 62.974 60.000 0.00 0.00 0.00 3.86
169 170 2.774351 GCCACCCCCTCAGCCTAT 60.774 66.667 0.00 0.00 0.00 2.57
170 171 3.125376 GCCACCCCCTCAGCCTATG 62.125 68.421 0.00 0.00 0.00 2.23
171 172 2.455565 CCACCCCCTCAGCCTATGG 61.456 68.421 0.00 0.00 0.00 2.74
172 173 2.039405 ACCCCCTCAGCCTATGGG 60.039 66.667 0.00 0.00 42.23 4.00
182 183 4.857251 CCTATGGGGCAGTTCGAC 57.143 61.111 0.00 0.00 0.00 4.20
183 184 1.904771 CCTATGGGGCAGTTCGACA 59.095 57.895 0.00 0.00 0.00 4.35
184 185 0.462047 CCTATGGGGCAGTTCGACAC 60.462 60.000 0.00 0.00 0.00 3.67
185 186 0.537188 CTATGGGGCAGTTCGACACT 59.463 55.000 0.00 0.00 35.35 3.55
186 187 1.754803 CTATGGGGCAGTTCGACACTA 59.245 52.381 0.00 0.00 32.76 2.74
187 188 1.204146 ATGGGGCAGTTCGACACTAT 58.796 50.000 0.00 0.00 32.76 2.12
188 189 0.981183 TGGGGCAGTTCGACACTATT 59.019 50.000 0.00 0.00 32.76 1.73
189 190 1.349688 TGGGGCAGTTCGACACTATTT 59.650 47.619 0.00 0.00 32.76 1.40
190 191 1.737793 GGGGCAGTTCGACACTATTTG 59.262 52.381 0.00 0.00 32.76 2.32
191 192 2.614481 GGGGCAGTTCGACACTATTTGA 60.614 50.000 0.00 0.00 32.76 2.69
192 193 2.415512 GGGCAGTTCGACACTATTTGAC 59.584 50.000 0.00 0.00 32.76 3.18
193 194 2.092211 GGCAGTTCGACACTATTTGACG 59.908 50.000 0.00 0.00 43.63 4.35
194 195 2.729882 GCAGTTCGACACTATTTGACGT 59.270 45.455 0.00 0.00 42.93 4.34
195 196 3.181543 GCAGTTCGACACTATTTGACGTC 60.182 47.826 9.11 9.11 42.93 4.34
196 197 3.364023 CAGTTCGACACTATTTGACGTCC 59.636 47.826 14.12 0.00 42.93 4.79
197 198 3.005050 AGTTCGACACTATTTGACGTCCA 59.995 43.478 14.12 0.00 42.93 4.02
198 199 3.861276 TCGACACTATTTGACGTCCAT 57.139 42.857 14.12 7.83 42.93 3.41
199 200 3.766151 TCGACACTATTTGACGTCCATC 58.234 45.455 14.12 0.00 42.93 3.51
200 201 2.858344 CGACACTATTTGACGTCCATCC 59.142 50.000 14.12 0.00 38.39 3.51
201 202 3.195661 GACACTATTTGACGTCCATCCC 58.804 50.000 14.12 0.00 0.00 3.85
202 203 2.093128 ACACTATTTGACGTCCATCCCC 60.093 50.000 14.12 0.00 0.00 4.81
203 204 2.170607 CACTATTTGACGTCCATCCCCT 59.829 50.000 14.12 0.00 0.00 4.79
204 205 2.844348 ACTATTTGACGTCCATCCCCTT 59.156 45.455 14.12 0.00 0.00 3.95
205 206 2.899303 ATTTGACGTCCATCCCCTTT 57.101 45.000 14.12 0.00 0.00 3.11
206 207 2.194201 TTTGACGTCCATCCCCTTTC 57.806 50.000 14.12 0.00 0.00 2.62
207 208 1.358152 TTGACGTCCATCCCCTTTCT 58.642 50.000 14.12 0.00 0.00 2.52
208 209 0.902531 TGACGTCCATCCCCTTTCTC 59.097 55.000 14.12 0.00 0.00 2.87
209 210 1.196012 GACGTCCATCCCCTTTCTCT 58.804 55.000 3.51 0.00 0.00 3.10
210 211 0.905357 ACGTCCATCCCCTTTCTCTG 59.095 55.000 0.00 0.00 0.00 3.35
211 212 0.905357 CGTCCATCCCCTTTCTCTGT 59.095 55.000 0.00 0.00 0.00 3.41
212 213 1.134670 CGTCCATCCCCTTTCTCTGTC 60.135 57.143 0.00 0.00 0.00 3.51
213 214 1.210722 GTCCATCCCCTTTCTCTGTCC 59.789 57.143 0.00 0.00 0.00 4.02
214 215 1.203428 TCCATCCCCTTTCTCTGTCCA 60.203 52.381 0.00 0.00 0.00 4.02
215 216 1.635487 CCATCCCCTTTCTCTGTCCAA 59.365 52.381 0.00 0.00 0.00 3.53
216 217 2.619074 CCATCCCCTTTCTCTGTCCAAC 60.619 54.545 0.00 0.00 0.00 3.77
217 218 0.685097 TCCCCTTTCTCTGTCCAACG 59.315 55.000 0.00 0.00 0.00 4.10
218 219 0.685097 CCCCTTTCTCTGTCCAACGA 59.315 55.000 0.00 0.00 0.00 3.85
219 220 1.608283 CCCCTTTCTCTGTCCAACGAC 60.608 57.143 0.00 0.00 39.66 4.34
220 221 1.419374 CCTTTCTCTGTCCAACGACG 58.581 55.000 0.00 0.00 42.37 5.12
221 222 1.000607 CCTTTCTCTGTCCAACGACGA 60.001 52.381 0.00 0.00 42.37 4.20
222 223 2.352814 CCTTTCTCTGTCCAACGACGAT 60.353 50.000 0.00 0.00 42.37 3.73
223 224 3.119602 CCTTTCTCTGTCCAACGACGATA 60.120 47.826 0.00 0.00 42.37 2.92
224 225 4.482386 CTTTCTCTGTCCAACGACGATAA 58.518 43.478 0.00 0.00 42.37 1.75
225 226 3.759527 TCTCTGTCCAACGACGATAAG 57.240 47.619 0.00 0.00 42.37 1.73
226 227 2.159421 TCTCTGTCCAACGACGATAAGC 60.159 50.000 0.00 0.00 42.37 3.09
227 228 1.135199 TCTGTCCAACGACGATAAGCC 60.135 52.381 0.00 0.00 42.37 4.35
228 229 0.457166 TGTCCAACGACGATAAGCCG 60.457 55.000 0.00 0.00 42.37 5.52
229 230 0.179156 GTCCAACGACGATAAGCCGA 60.179 55.000 0.00 0.00 0.00 5.54
230 231 0.742505 TCCAACGACGATAAGCCGAT 59.257 50.000 0.00 0.00 0.00 4.18
231 232 0.852777 CCAACGACGATAAGCCGATG 59.147 55.000 0.00 0.00 0.00 3.84
232 233 1.556564 CAACGACGATAAGCCGATGT 58.443 50.000 0.00 0.00 0.00 3.06
233 234 1.517276 CAACGACGATAAGCCGATGTC 59.483 52.381 0.00 0.00 0.00 3.06
234 235 2.410855 CGACGATAAGCCGATGTCG 58.589 57.895 0.00 0.00 45.06 4.35
235 236 1.597700 CGACGATAAGCCGATGTCGC 61.598 60.000 0.00 0.00 44.61 5.19
236 237 0.317938 GACGATAAGCCGATGTCGCT 60.318 55.000 0.00 0.00 37.59 4.93
237 238 0.949397 ACGATAAGCCGATGTCGCTA 59.051 50.000 0.00 0.00 37.59 4.26
238 239 1.328439 CGATAAGCCGATGTCGCTAC 58.672 55.000 0.00 0.00 38.18 3.58
239 240 1.334689 CGATAAGCCGATGTCGCTACA 60.335 52.381 0.00 0.00 40.69 2.74
240 241 2.052157 GATAAGCCGATGTCGCTACAC 58.948 52.381 0.00 0.00 38.78 2.90
241 242 0.812549 TAAGCCGATGTCGCTACACA 59.187 50.000 0.00 0.00 38.78 3.72
242 243 0.175760 AAGCCGATGTCGCTACACAT 59.824 50.000 0.00 0.00 38.78 3.21
243 244 0.249073 AGCCGATGTCGCTACACATC 60.249 55.000 9.25 9.25 46.40 3.06
248 249 3.006659 GATGTCGCTACACATCTCCTC 57.993 52.381 11.22 0.00 46.37 3.71
249 250 1.834188 TGTCGCTACACATCTCCTCA 58.166 50.000 0.00 0.00 0.00 3.86
250 251 2.379005 TGTCGCTACACATCTCCTCAT 58.621 47.619 0.00 0.00 0.00 2.90
251 252 2.359214 TGTCGCTACACATCTCCTCATC 59.641 50.000 0.00 0.00 0.00 2.92
252 253 1.604278 TCGCTACACATCTCCTCATCG 59.396 52.381 0.00 0.00 0.00 3.84
253 254 1.777101 GCTACACATCTCCTCATCGC 58.223 55.000 0.00 0.00 0.00 4.58
254 255 1.928152 GCTACACATCTCCTCATCGCG 60.928 57.143 0.00 0.00 0.00 5.87
255 256 0.030773 TACACATCTCCTCATCGCGC 59.969 55.000 0.00 0.00 0.00 6.86
256 257 1.953138 CACATCTCCTCATCGCGCC 60.953 63.158 0.00 0.00 0.00 6.53
257 258 2.356793 CATCTCCTCATCGCGCCC 60.357 66.667 0.00 0.00 0.00 6.13
258 259 2.522923 ATCTCCTCATCGCGCCCT 60.523 61.111 0.00 0.00 0.00 5.19
259 260 2.136878 ATCTCCTCATCGCGCCCTT 61.137 57.895 0.00 0.00 0.00 3.95
260 261 2.093537 ATCTCCTCATCGCGCCCTTC 62.094 60.000 0.00 0.00 0.00 3.46
261 262 3.798954 CTCCTCATCGCGCCCTTCC 62.799 68.421 0.00 0.00 0.00 3.46
262 263 3.854669 CCTCATCGCGCCCTTCCT 61.855 66.667 0.00 0.00 0.00 3.36
263 264 2.279784 CTCATCGCGCCCTTCCTC 60.280 66.667 0.00 0.00 0.00 3.71
264 265 3.798954 CTCATCGCGCCCTTCCTCC 62.799 68.421 0.00 0.00 0.00 4.30
265 266 4.918201 CATCGCGCCCTTCCTCCC 62.918 72.222 0.00 0.00 0.00 4.30
273 274 4.148825 CCTTCCTCCCGCTCCGTG 62.149 72.222 0.00 0.00 0.00 4.94
274 275 3.382832 CTTCCTCCCGCTCCGTGT 61.383 66.667 0.00 0.00 0.00 4.49
275 276 2.920912 TTCCTCCCGCTCCGTGTT 60.921 61.111 0.00 0.00 0.00 3.32
276 277 2.450479 CTTCCTCCCGCTCCGTGTTT 62.450 60.000 0.00 0.00 0.00 2.83
277 278 2.434359 CCTCCCGCTCCGTGTTTC 60.434 66.667 0.00 0.00 0.00 2.78
282 283 0.602905 CCCGCTCCGTGTTTCTTCTT 60.603 55.000 0.00 0.00 0.00 2.52
286 287 1.809684 CTCCGTGTTTCTTCTTCCCC 58.190 55.000 0.00 0.00 0.00 4.81
287 288 0.399075 TCCGTGTTTCTTCTTCCCCC 59.601 55.000 0.00 0.00 0.00 5.40
288 289 0.400594 CCGTGTTTCTTCTTCCCCCT 59.599 55.000 0.00 0.00 0.00 4.79
301 302 0.256752 TCCCCCTGTGATTGCATCTG 59.743 55.000 0.00 0.00 0.00 2.90
314 315 2.642427 TGCATCTGAACCGCATAATGT 58.358 42.857 0.00 0.00 0.00 2.71
325 326 1.677576 CGCATAATGTTGCATCCCACT 59.322 47.619 0.00 0.00 42.91 4.00
343 344 1.799258 CTGGCACAAGCACTTCACCC 61.799 60.000 0.00 0.00 44.61 4.61
349 350 1.073923 ACAAGCACTTCACCCCTTAGG 59.926 52.381 0.00 0.00 43.78 2.69
364 365 0.767446 TTAGGAACCGGGGGTGAACA 60.767 55.000 6.32 0.00 35.34 3.18
403 404 5.404466 TCCATTTAAACAATTGCCTCCAG 57.596 39.130 5.05 0.00 0.00 3.86
421 422 2.434702 CCAGCTAAAATACTCCCGGTCT 59.565 50.000 0.00 0.00 0.00 3.85
485 490 1.202698 AGCCATACGCAGAAGATTCCC 60.203 52.381 0.00 0.00 41.38 3.97
548 553 1.309499 CGACGACTTGCTCCTCCTCT 61.309 60.000 0.00 0.00 0.00 3.69
549 554 0.172352 GACGACTTGCTCCTCCTCTG 59.828 60.000 0.00 0.00 0.00 3.35
562 567 0.616111 TCCTCTGCCTCACTTCCCTC 60.616 60.000 0.00 0.00 0.00 4.30
563 568 1.621672 CCTCTGCCTCACTTCCCTCC 61.622 65.000 0.00 0.00 0.00 4.30
564 569 1.613630 TCTGCCTCACTTCCCTCCC 60.614 63.158 0.00 0.00 0.00 4.30
565 570 2.610859 TGCCTCACTTCCCTCCCC 60.611 66.667 0.00 0.00 0.00 4.81
566 571 3.412408 GCCTCACTTCCCTCCCCC 61.412 72.222 0.00 0.00 0.00 5.40
567 572 3.083997 CCTCACTTCCCTCCCCCG 61.084 72.222 0.00 0.00 0.00 5.73
568 573 3.083997 CTCACTTCCCTCCCCCGG 61.084 72.222 0.00 0.00 0.00 5.73
708 720 2.777692 TCCTCTCTCCTCTCTTCTCTCC 59.222 54.545 0.00 0.00 0.00 3.71
781 797 2.358737 CCTCGCCTTGCTTTCCGT 60.359 61.111 0.00 0.00 0.00 4.69
797 813 3.596310 TCCGTGTGATTTATTCCGTCA 57.404 42.857 0.00 0.00 0.00 4.35
877 893 4.260985 TGTCTCTGTTCTTTGTTCTTGCA 58.739 39.130 0.00 0.00 0.00 4.08
892 908 2.739379 TCTTGCAAATAATCGTGCGTGA 59.261 40.909 0.00 0.00 43.93 4.35
895 911 1.129624 GCAAATAATCGTGCGTGACCA 59.870 47.619 0.00 0.00 0.00 4.02
939 955 1.541672 GGAGGAGGAGGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
941 957 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
942 958 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
943 959 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
944 960 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
945 961 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
946 962 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
947 963 2.018086 AGGAGGAGGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
948 964 2.015726 GGAGGAGGAGGAGGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
949 965 1.541672 GAGGAGGAGGAGGAGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
950 966 2.018086 AGGAGGAGGAGGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
951 967 2.015726 GGAGGAGGAGGAGGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
1092 1108 5.248640 TCATTTCTTCCTCAGTTCATGGTC 58.751 41.667 0.00 0.00 0.00 4.02
1095 1111 4.277515 TCTTCCTCAGTTCATGGTCTTG 57.722 45.455 0.00 0.00 0.00 3.02
1141 1161 3.519908 TTTTTGCGTCTGTTCTCATCG 57.480 42.857 0.00 0.00 0.00 3.84
1142 1162 2.432206 TTTGCGTCTGTTCTCATCGA 57.568 45.000 0.00 0.00 0.00 3.59
1143 1163 1.698165 TTGCGTCTGTTCTCATCGAC 58.302 50.000 0.00 0.00 0.00 4.20
1144 1164 0.109272 TGCGTCTGTTCTCATCGACC 60.109 55.000 0.00 0.00 0.00 4.79
1147 1167 1.468224 CGTCTGTTCTCATCGACCCAG 60.468 57.143 0.00 0.00 0.00 4.45
1148 1168 1.546476 GTCTGTTCTCATCGACCCAGT 59.454 52.381 0.00 0.00 0.00 4.00
1149 1169 2.028930 GTCTGTTCTCATCGACCCAGTT 60.029 50.000 0.00 0.00 0.00 3.16
1150 1170 3.192844 GTCTGTTCTCATCGACCCAGTTA 59.807 47.826 0.00 0.00 0.00 2.24
1151 1171 3.192844 TCTGTTCTCATCGACCCAGTTAC 59.807 47.826 0.00 0.00 0.00 2.50
1152 1172 2.232941 TGTTCTCATCGACCCAGTTACC 59.767 50.000 0.00 0.00 0.00 2.85
1153 1173 2.225382 TCTCATCGACCCAGTTACCA 57.775 50.000 0.00 0.00 0.00 3.25
1154 1174 1.822990 TCTCATCGACCCAGTTACCAC 59.177 52.381 0.00 0.00 0.00 4.16
1155 1175 0.899720 TCATCGACCCAGTTACCACC 59.100 55.000 0.00 0.00 0.00 4.61
1156 1176 0.611200 CATCGACCCAGTTACCACCA 59.389 55.000 0.00 0.00 0.00 4.17
1157 1177 0.902531 ATCGACCCAGTTACCACCAG 59.097 55.000 0.00 0.00 0.00 4.00
1158 1178 1.189524 TCGACCCAGTTACCACCAGG 61.190 60.000 0.00 0.00 42.21 4.45
1159 1179 1.683441 GACCCAGTTACCACCAGGG 59.317 63.158 0.00 0.00 42.24 4.45
1160 1180 0.838987 GACCCAGTTACCACCAGGGA 60.839 60.000 2.29 0.00 39.98 4.20
1161 1181 0.402272 ACCCAGTTACCACCAGGGAA 60.402 55.000 2.29 0.00 39.98 3.97
1162 1182 0.999712 CCCAGTTACCACCAGGGAAT 59.000 55.000 0.00 0.00 40.72 3.01
1163 1183 1.340991 CCCAGTTACCACCAGGGAATG 60.341 57.143 0.00 0.00 40.72 2.67
1164 1184 1.633432 CCAGTTACCACCAGGGAATGA 59.367 52.381 0.00 0.00 40.72 2.57
1165 1185 2.041081 CCAGTTACCACCAGGGAATGAA 59.959 50.000 0.00 0.00 40.72 2.57
1166 1186 3.499563 CCAGTTACCACCAGGGAATGAAA 60.500 47.826 0.00 0.00 40.72 2.69
1167 1187 3.506067 CAGTTACCACCAGGGAATGAAAC 59.494 47.826 0.00 0.00 40.72 2.78
1204 1224 3.834231 ACCAGGGAATGAAACTTGAATGG 59.166 43.478 0.00 0.00 0.00 3.16
1207 1227 5.658190 CCAGGGAATGAAACTTGAATGGTAT 59.342 40.000 0.00 0.00 0.00 2.73
1289 1309 6.319911 TGTCTGTTCATGGTCAAATGTTGTAA 59.680 34.615 0.00 0.00 0.00 2.41
1315 1335 6.824305 ACATGCCATTAATATTACAGGAGC 57.176 37.500 13.91 6.08 0.00 4.70
1341 1361 9.376075 CTTCTGATTATGTGATTGTACTTCTGT 57.624 33.333 0.00 0.00 0.00 3.41
1345 1365 9.154847 TGATTATGTGATTGTACTTCTGTGAAG 57.845 33.333 5.85 5.85 0.00 3.02
1368 1390 8.611654 AAGTACATACCGTTCAAATTTACTGT 57.388 30.769 0.00 0.00 0.00 3.55
1382 1409 6.903883 AATTTACTGTAACCTATGAGTGCG 57.096 37.500 0.00 0.00 0.00 5.34
1399 1426 0.727398 GCGAGAACATGTAGTTGGGC 59.273 55.000 0.00 0.00 41.51 5.36
1401 1428 1.369625 GAGAACATGTAGTTGGGCCG 58.630 55.000 0.00 0.00 41.51 6.13
1440 1468 1.269517 GGCACAACTTTGAATTCGGCA 60.270 47.619 0.04 0.00 0.00 5.69
1444 1472 4.050553 CACAACTTTGAATTCGGCACATT 58.949 39.130 0.04 0.00 0.00 2.71
1495 1523 0.446222 GACGCAAGCCTAATTTCGCA 59.554 50.000 0.00 0.00 45.62 5.10
1709 1737 5.841237 AGTTCCACATGGAGCACTAGTATAT 59.159 40.000 16.07 0.00 46.37 0.86
1756 1784 1.912043 AGGCAGCTAGAAGGAACATGT 59.088 47.619 0.00 0.00 0.00 3.21
1875 1904 4.699257 GCACTGTCATGATTCCTTCTTTCT 59.301 41.667 0.00 0.00 0.00 2.52
2088 2117 8.723942 AAACTATAGTCATTGTTCCATCAGAC 57.276 34.615 5.70 0.00 30.26 3.51
2341 2378 9.850628 GTGGTAAATTTCTTATTCCCTGTTTAC 57.149 33.333 0.00 0.00 32.75 2.01
2395 2432 4.935352 AGTGAGAGACTTATGCCATCTC 57.065 45.455 0.00 0.00 39.38 2.75
2529 2566 4.093556 CGAAAGCTGTATCCTTTGTCCTTC 59.906 45.833 0.00 0.00 32.98 3.46
2531 2568 2.912956 AGCTGTATCCTTTGTCCTTCCA 59.087 45.455 0.00 0.00 0.00 3.53
2580 2618 9.783081 ATATGTTCTGTACATCTATGCATTTGA 57.217 29.630 3.54 4.38 44.15 2.69
2755 2793 2.002586 CAGTGTCCTTGTATTGCTCGG 58.997 52.381 0.00 0.00 0.00 4.63
2760 2798 3.512329 TGTCCTTGTATTGCTCGGACTAA 59.488 43.478 8.08 0.00 43.45 2.24
2856 2894 2.397549 GCTGCAAATCACCTGTGTTTC 58.602 47.619 0.00 0.00 0.00 2.78
2858 2896 2.361757 CTGCAAATCACCTGTGTTTCCA 59.638 45.455 0.00 0.00 0.00 3.53
3245 3288 6.407412 CCACGCAGATACCTATCAATCCATAT 60.407 42.308 0.00 0.00 35.17 1.78
3248 3291 5.762218 GCAGATACCTATCAATCCATATGGC 59.238 44.000 17.58 0.00 35.17 4.40
3340 3383 3.277416 AAGGTTTGTCTCTCCTACCCT 57.723 47.619 0.00 0.00 0.00 4.34
3342 3385 3.710724 AGGTTTGTCTCTCCTACCCTAC 58.289 50.000 0.00 0.00 0.00 3.18
3349 3392 5.895807 TGTCTCTCCTACCCTACACTAAAA 58.104 41.667 0.00 0.00 0.00 1.52
3501 3544 1.253116 CGTGTTTTGATGCAGCATCG 58.747 50.000 26.79 12.58 43.14 3.84
3559 3602 3.037431 GCTCATTCTAGCATCCGTCAT 57.963 47.619 0.00 0.00 42.30 3.06
3560 3603 2.735663 GCTCATTCTAGCATCCGTCATG 59.264 50.000 0.00 0.00 42.30 3.07
3650 3696 1.066143 CCTACCGCTGATGGAACTTGT 60.066 52.381 0.00 0.00 0.00 3.16
3665 3711 7.062749 TGGAACTTGTGTAAGAGACTACATT 57.937 36.000 0.00 0.00 37.36 2.71
3768 3814 3.447229 CACAGGGAAAGGTTGTTGAAAGT 59.553 43.478 0.00 0.00 0.00 2.66
3810 3857 3.936453 GACAACCGCACATGAATACCTTA 59.064 43.478 0.00 0.00 0.00 2.69
3869 3916 8.006298 TGAACTTGTATCCTGTTGATGTTTTT 57.994 30.769 0.00 0.00 34.76 1.94
3924 3971 4.436998 AAGAAGGCGACCGGAGCG 62.437 66.667 9.46 13.26 35.00 5.03
4116 4163 0.034059 CCTGATCCCATGCTCGGTAC 59.966 60.000 0.00 0.00 0.00 3.34
4147 4194 0.889186 GTTCGCCAACACAGACCCAT 60.889 55.000 0.00 0.00 32.14 4.00
4212 4260 0.109458 CGTAGACACGTAGCAGGCAA 60.109 55.000 0.00 0.00 43.31 4.52
4219 4267 2.034879 CGTAGCAGGCAACCACAGG 61.035 63.158 0.00 0.00 37.17 4.00
4268 4319 5.212532 CTGGAAGGAGATACAGAGAATGG 57.787 47.826 0.00 0.00 32.86 3.16
4269 4320 3.389329 TGGAAGGAGATACAGAGAATGGC 59.611 47.826 0.00 0.00 0.00 4.40
4270 4321 3.244387 GGAAGGAGATACAGAGAATGGCC 60.244 52.174 0.00 0.00 0.00 5.36
4285 4344 0.672401 TGGCCGCTTAGAAGAAACCG 60.672 55.000 0.00 0.00 0.00 4.44
4349 4412 8.649973 TTTAATTTATTTTGCTGTTCGTTGGT 57.350 26.923 0.00 0.00 0.00 3.67
4350 4413 6.763303 AATTTATTTTGCTGTTCGTTGGTC 57.237 33.333 0.00 0.00 0.00 4.02
4390 4457 2.135664 ACGAGTTGTGCTGTAGACAC 57.864 50.000 0.00 0.00 38.55 3.67
4397 4464 3.487563 TGTGCTGTAGACACGTAGATG 57.512 47.619 0.00 0.00 41.03 2.90
4452 4535 8.617491 TGGATGGATGGAATGATATGAATAAGT 58.383 33.333 0.00 0.00 0.00 2.24
4494 4577 3.550437 AAATCTCTAACCGCAGCAGAT 57.450 42.857 0.00 0.00 0.00 2.90
4495 4578 3.550437 AATCTCTAACCGCAGCAGATT 57.450 42.857 0.00 0.00 0.00 2.40
4497 4580 2.621338 TCTCTAACCGCAGCAGATTTG 58.379 47.619 0.00 0.00 0.00 2.32
4524 4722 0.607489 CTTCACTTGACCAGGCCAGG 60.607 60.000 13.67 13.67 0.00 4.45
4536 4734 2.278330 GGCCAGGCAGGAAACAAGG 61.278 63.158 15.19 0.00 41.22 3.61
4537 4735 2.278330 GCCAGGCAGGAAACAAGGG 61.278 63.158 6.55 0.00 41.22 3.95
4538 4736 2.278330 CCAGGCAGGAAACAAGGGC 61.278 63.158 0.00 0.00 41.22 5.19
4539 4737 1.228675 CAGGCAGGAAACAAGGGCT 60.229 57.895 0.00 0.00 35.09 5.19
4540 4738 0.038166 CAGGCAGGAAACAAGGGCTA 59.962 55.000 0.00 0.00 33.81 3.93
4541 4739 0.038310 AGGCAGGAAACAAGGGCTAC 59.962 55.000 0.00 0.00 33.48 3.58
4542 4740 0.038310 GGCAGGAAACAAGGGCTACT 59.962 55.000 0.00 0.00 0.00 2.57
4543 4741 1.454201 GCAGGAAACAAGGGCTACTC 58.546 55.000 0.00 0.00 0.00 2.59
4544 4742 1.271379 GCAGGAAACAAGGGCTACTCA 60.271 52.381 0.00 0.00 0.00 3.41
4545 4743 2.619074 GCAGGAAACAAGGGCTACTCAT 60.619 50.000 0.00 0.00 0.00 2.90
4546 4744 3.690460 CAGGAAACAAGGGCTACTCATT 58.310 45.455 0.00 0.00 0.00 2.57
4547 4745 3.691609 CAGGAAACAAGGGCTACTCATTC 59.308 47.826 0.00 0.00 0.00 2.67
4548 4746 2.678336 GGAAACAAGGGCTACTCATTCG 59.322 50.000 0.00 0.00 0.00 3.34
4549 4747 1.739067 AACAAGGGCTACTCATTCGC 58.261 50.000 0.00 0.00 0.00 4.70
4550 4748 0.613260 ACAAGGGCTACTCATTCGCA 59.387 50.000 0.00 0.00 0.00 5.10
4551 4749 1.003118 ACAAGGGCTACTCATTCGCAA 59.997 47.619 0.00 0.00 0.00 4.85
4552 4750 2.083774 CAAGGGCTACTCATTCGCAAA 58.916 47.619 0.00 0.00 0.00 3.68
4553 4751 2.487762 CAAGGGCTACTCATTCGCAAAA 59.512 45.455 0.00 0.00 0.00 2.44
4554 4752 2.790433 AGGGCTACTCATTCGCAAAAA 58.210 42.857 0.00 0.00 0.00 1.94
4585 4783 3.088532 CAAGGGCTACTGGTTTTGCATA 58.911 45.455 0.00 0.00 0.00 3.14
4621 4820 2.418083 GGCTGAATTTGGAGGCCCG 61.418 63.158 0.00 0.00 37.12 6.13
4627 4826 0.471022 AATTTGGAGGCCCGGTGTTT 60.471 50.000 0.00 0.00 34.29 2.83
4628 4827 1.184970 ATTTGGAGGCCCGGTGTTTG 61.185 55.000 0.00 0.00 34.29 2.93
4685 4889 7.571798 GCTTGTTCAAATAATTTTGGGAGCTTG 60.572 37.037 0.00 0.00 42.10 4.01
4688 4892 6.036577 TCAAATAATTTTGGGAGCTTGTCC 57.963 37.500 0.00 0.00 46.10 4.02
4757 4966 6.593770 ACATTCAACAACCTTCCAAAAGAAAC 59.406 34.615 0.00 0.00 34.14 2.78
4759 4968 4.459685 TCAACAACCTTCCAAAAGAAACGA 59.540 37.500 0.00 0.00 34.14 3.85
4789 4998 2.736670 ACAGCTCCCTGAAACAAAGT 57.263 45.000 0.00 0.00 41.77 2.66
4799 5008 4.159506 CCCTGAAACAAAGTTTCTTGACCA 59.840 41.667 19.61 2.79 0.00 4.02
4816 5025 3.125146 TGACCAAATTTCGCAGATTCTCG 59.875 43.478 0.00 0.00 35.04 4.04
4863 5074 2.208431 GGAGTCATCCGCATCTGAAAG 58.792 52.381 0.00 0.00 35.37 2.62
4885 5096 0.251916 CTGCCCTTACGAATGGTGGA 59.748 55.000 0.00 0.00 0.00 4.02
4886 5097 0.035820 TGCCCTTACGAATGGTGGAC 60.036 55.000 0.00 0.00 0.00 4.02
4887 5098 1.087771 GCCCTTACGAATGGTGGACG 61.088 60.000 0.00 0.00 0.00 4.79
4888 5099 1.087771 CCCTTACGAATGGTGGACGC 61.088 60.000 0.00 0.00 0.00 5.19
4889 5100 0.108329 CCTTACGAATGGTGGACGCT 60.108 55.000 0.00 0.00 0.00 5.07
4890 5101 1.278238 CTTACGAATGGTGGACGCTC 58.722 55.000 0.00 0.00 0.00 5.03
4891 5102 0.892755 TTACGAATGGTGGACGCTCT 59.107 50.000 0.00 0.00 0.00 4.09
4892 5103 0.892755 TACGAATGGTGGACGCTCTT 59.107 50.000 0.00 0.00 0.00 2.85
4893 5104 0.034896 ACGAATGGTGGACGCTCTTT 59.965 50.000 0.00 0.00 0.00 2.52
4894 5105 1.156736 CGAATGGTGGACGCTCTTTT 58.843 50.000 0.00 0.00 0.00 2.27
4895 5106 1.535462 CGAATGGTGGACGCTCTTTTT 59.465 47.619 0.00 0.00 0.00 1.94
4919 5130 9.822727 TTTTTATTTCTTTACTGAGGGAGGATT 57.177 29.630 0.00 0.00 0.00 3.01
4920 5131 9.462606 TTTTATTTCTTTACTGAGGGAGGATTC 57.537 33.333 0.00 0.00 0.00 2.52
4921 5132 6.642733 ATTTCTTTACTGAGGGAGGATTCA 57.357 37.500 0.00 0.00 0.00 2.57
4922 5133 6.448369 TTTCTTTACTGAGGGAGGATTCAA 57.552 37.500 0.00 0.00 0.00 2.69
4923 5134 6.448369 TTCTTTACTGAGGGAGGATTCAAA 57.552 37.500 0.00 0.00 0.00 2.69
4924 5135 5.805728 TCTTTACTGAGGGAGGATTCAAAC 58.194 41.667 0.00 0.00 0.00 2.93
4925 5136 2.770164 ACTGAGGGAGGATTCAAACG 57.230 50.000 0.00 0.00 0.00 3.60
4926 5137 1.978580 ACTGAGGGAGGATTCAAACGT 59.021 47.619 0.00 0.00 0.00 3.99
4927 5138 2.289694 ACTGAGGGAGGATTCAAACGTG 60.290 50.000 0.00 0.00 0.00 4.49
4928 5139 1.697432 TGAGGGAGGATTCAAACGTGT 59.303 47.619 0.00 0.00 0.00 4.49
4929 5140 2.105821 TGAGGGAGGATTCAAACGTGTT 59.894 45.455 0.00 0.00 0.00 3.32
4930 5141 3.325425 TGAGGGAGGATTCAAACGTGTTA 59.675 43.478 0.00 0.00 0.00 2.41
4931 5142 4.202377 TGAGGGAGGATTCAAACGTGTTAA 60.202 41.667 0.00 0.00 0.00 2.01
4932 5143 4.918588 AGGGAGGATTCAAACGTGTTAAT 58.081 39.130 0.00 0.00 0.00 1.40
4933 5144 4.700213 AGGGAGGATTCAAACGTGTTAATG 59.300 41.667 0.00 0.00 0.00 1.90
4934 5145 4.698304 GGGAGGATTCAAACGTGTTAATGA 59.302 41.667 0.00 0.00 0.00 2.57
4935 5146 5.182380 GGGAGGATTCAAACGTGTTAATGAA 59.818 40.000 0.00 3.19 36.35 2.57
4936 5147 6.294286 GGGAGGATTCAAACGTGTTAATGAAA 60.294 38.462 4.50 0.00 35.62 2.69
4937 5148 7.312899 GGAGGATTCAAACGTGTTAATGAAAT 58.687 34.615 4.50 0.00 35.62 2.17
4938 5149 7.273381 GGAGGATTCAAACGTGTTAATGAAATG 59.727 37.037 4.50 0.00 35.62 2.32
4939 5150 7.881142 AGGATTCAAACGTGTTAATGAAATGA 58.119 30.769 4.50 0.00 35.62 2.57
4940 5151 8.356657 AGGATTCAAACGTGTTAATGAAATGAA 58.643 29.630 4.50 1.47 35.62 2.57
4941 5152 9.139174 GGATTCAAACGTGTTAATGAAATGAAT 57.861 29.630 4.50 5.48 37.61 2.57
4942 5153 9.941991 GATTCAAACGTGTTAATGAAATGAATG 57.058 29.630 9.87 0.00 35.72 2.67
4943 5154 9.689976 ATTCAAACGTGTTAATGAAATGAATGA 57.310 25.926 4.50 0.00 35.62 2.57
4944 5155 8.726650 TCAAACGTGTTAATGAAATGAATGAG 57.273 30.769 0.00 0.00 0.00 2.90
4945 5156 8.563732 TCAAACGTGTTAATGAAATGAATGAGA 58.436 29.630 0.00 0.00 0.00 3.27
4946 5157 8.629986 CAAACGTGTTAATGAAATGAATGAGAC 58.370 33.333 0.00 0.00 0.00 3.36
4947 5158 7.433708 ACGTGTTAATGAAATGAATGAGACA 57.566 32.000 0.00 0.00 0.00 3.41
4948 5159 7.521529 ACGTGTTAATGAAATGAATGAGACAG 58.478 34.615 0.00 0.00 0.00 3.51
4949 5160 7.173218 ACGTGTTAATGAAATGAATGAGACAGT 59.827 33.333 0.00 0.00 0.00 3.55
4950 5161 8.017373 CGTGTTAATGAAATGAATGAGACAGTT 58.983 33.333 0.00 0.00 0.00 3.16
4951 5162 9.683069 GTGTTAATGAAATGAATGAGACAGTTT 57.317 29.630 0.00 0.00 0.00 2.66
4952 5163 9.681692 TGTTAATGAAATGAATGAGACAGTTTG 57.318 29.630 0.00 0.00 0.00 2.93
4953 5164 8.642020 GTTAATGAAATGAATGAGACAGTTTGC 58.358 33.333 0.00 0.00 0.00 3.68
4954 5165 5.125100 TGAAATGAATGAGACAGTTTGCC 57.875 39.130 0.00 0.00 0.00 4.52
4955 5166 4.828939 TGAAATGAATGAGACAGTTTGCCT 59.171 37.500 0.00 0.00 0.00 4.75
4956 5167 5.048504 TGAAATGAATGAGACAGTTTGCCTC 60.049 40.000 0.00 0.00 0.00 4.70
4957 5168 3.490439 TGAATGAGACAGTTTGCCTCA 57.510 42.857 0.00 0.00 40.68 3.86
4958 5169 3.819368 TGAATGAGACAGTTTGCCTCAA 58.181 40.909 0.00 0.00 39.94 3.02
4959 5170 3.565482 TGAATGAGACAGTTTGCCTCAAC 59.435 43.478 0.00 0.00 39.94 3.18
4960 5171 3.498774 ATGAGACAGTTTGCCTCAACT 57.501 42.857 0.00 0.00 39.94 3.16
4961 5172 3.281727 TGAGACAGTTTGCCTCAACTT 57.718 42.857 0.00 0.00 34.38 2.66
4962 5173 2.945008 TGAGACAGTTTGCCTCAACTTG 59.055 45.455 0.00 0.00 34.38 3.16
4963 5174 2.291741 GAGACAGTTTGCCTCAACTTGG 59.708 50.000 0.00 0.00 0.00 3.61
4969 5180 3.447040 GCCTCAACTTGGCTTGCA 58.553 55.556 0.00 0.00 46.38 4.08
4970 5181 1.741525 GCCTCAACTTGGCTTGCAA 59.258 52.632 0.00 0.00 46.38 4.08
4971 5182 0.319297 GCCTCAACTTGGCTTGCAAG 60.319 55.000 22.44 22.44 46.38 4.01
4972 5183 1.035139 CCTCAACTTGGCTTGCAAGT 58.965 50.000 26.55 5.15 43.89 3.16
4973 5184 1.000938 CCTCAACTTGGCTTGCAAGTC 60.001 52.381 24.15 24.15 41.49 3.01
4974 5185 1.952296 CTCAACTTGGCTTGCAAGTCT 59.048 47.619 29.73 9.07 41.49 3.24
4975 5186 3.141398 CTCAACTTGGCTTGCAAGTCTA 58.859 45.455 29.73 22.19 41.49 2.59
4976 5187 3.754965 TCAACTTGGCTTGCAAGTCTAT 58.245 40.909 29.73 13.67 41.49 1.98
4977 5188 4.144297 TCAACTTGGCTTGCAAGTCTATT 58.856 39.130 29.73 18.33 41.49 1.73
4978 5189 4.216257 TCAACTTGGCTTGCAAGTCTATTC 59.784 41.667 29.73 11.36 41.49 1.75
4979 5190 3.754965 ACTTGGCTTGCAAGTCTATTCA 58.245 40.909 29.73 8.28 38.37 2.57
4980 5191 4.144297 ACTTGGCTTGCAAGTCTATTCAA 58.856 39.130 29.73 15.34 38.37 2.69
4981 5192 4.584325 ACTTGGCTTGCAAGTCTATTCAAA 59.416 37.500 29.73 14.66 38.37 2.69
4982 5193 5.244626 ACTTGGCTTGCAAGTCTATTCAAAT 59.755 36.000 29.73 4.43 38.37 2.32
4983 5194 5.726980 TGGCTTGCAAGTCTATTCAAATT 57.273 34.783 29.73 0.00 0.00 1.82
4984 5195 6.832520 TGGCTTGCAAGTCTATTCAAATTA 57.167 33.333 29.73 4.47 0.00 1.40
4985 5196 6.620678 TGGCTTGCAAGTCTATTCAAATTAC 58.379 36.000 29.73 7.42 0.00 1.89
4986 5197 6.208402 TGGCTTGCAAGTCTATTCAAATTACA 59.792 34.615 29.73 3.72 0.00 2.41
4987 5198 6.528072 GGCTTGCAAGTCTATTCAAATTACAC 59.472 38.462 26.55 4.46 0.00 2.90
4988 5199 7.083858 GCTTGCAAGTCTATTCAAATTACACA 58.916 34.615 26.55 0.00 0.00 3.72
4989 5200 7.756722 GCTTGCAAGTCTATTCAAATTACACAT 59.243 33.333 26.55 0.00 0.00 3.21
4990 5201 8.969121 TTGCAAGTCTATTCAAATTACACATG 57.031 30.769 0.00 0.00 0.00 3.21
4991 5202 8.334263 TGCAAGTCTATTCAAATTACACATGA 57.666 30.769 0.00 0.00 0.00 3.07
4992 5203 8.236586 TGCAAGTCTATTCAAATTACACATGAC 58.763 33.333 0.00 0.00 0.00 3.06
4993 5204 8.454106 GCAAGTCTATTCAAATTACACATGACT 58.546 33.333 0.00 0.00 33.25 3.41
5005 5216 9.502145 AAATTACACATGACTTATATGCAAACG 57.498 29.630 0.00 0.00 0.00 3.60
5006 5217 7.603963 TTACACATGACTTATATGCAAACGT 57.396 32.000 0.00 0.00 0.00 3.99
5007 5218 8.705048 TTACACATGACTTATATGCAAACGTA 57.295 30.769 0.00 0.00 0.00 3.57
5008 5219 7.603963 ACACATGACTTATATGCAAACGTAA 57.396 32.000 0.00 0.00 0.00 3.18
5009 5220 8.208718 ACACATGACTTATATGCAAACGTAAT 57.791 30.769 0.00 0.00 0.00 1.89
5010 5221 8.335356 ACACATGACTTATATGCAAACGTAATC 58.665 33.333 0.00 0.00 0.00 1.75
5011 5222 8.551205 CACATGACTTATATGCAAACGTAATCT 58.449 33.333 0.00 0.00 0.00 2.40
5012 5223 9.758651 ACATGACTTATATGCAAACGTAATCTA 57.241 29.630 0.00 0.00 0.00 1.98
5015 5226 9.203421 TGACTTATATGCAAACGTAATCTATGG 57.797 33.333 0.00 0.00 0.00 2.74
5016 5227 8.547967 ACTTATATGCAAACGTAATCTATGGG 57.452 34.615 0.00 0.00 0.00 4.00
5017 5228 8.154856 ACTTATATGCAAACGTAATCTATGGGT 58.845 33.333 0.00 0.00 0.00 4.51
5018 5229 8.911918 TTATATGCAAACGTAATCTATGGGTT 57.088 30.769 0.00 0.00 0.00 4.11
5019 5230 9.999660 TTATATGCAAACGTAATCTATGGGTTA 57.000 29.630 0.00 0.00 0.00 2.85
5021 5232 7.817418 ATGCAAACGTAATCTATGGGTTATT 57.183 32.000 0.00 0.00 0.00 1.40
5022 5233 7.633193 TGCAAACGTAATCTATGGGTTATTT 57.367 32.000 0.00 0.00 0.00 1.40
5023 5234 8.057536 TGCAAACGTAATCTATGGGTTATTTT 57.942 30.769 0.00 0.00 0.00 1.82
5024 5235 9.175312 TGCAAACGTAATCTATGGGTTATTTTA 57.825 29.630 0.00 0.00 0.00 1.52
5025 5236 9.442033 GCAAACGTAATCTATGGGTTATTTTAC 57.558 33.333 0.00 0.00 0.00 2.01
5048 5259 7.851822 ACTTACTATGCAAATGTTCAAAACG 57.148 32.000 0.00 0.00 0.00 3.60
5049 5260 7.644490 ACTTACTATGCAAATGTTCAAAACGA 58.356 30.769 0.00 0.00 0.00 3.85
5050 5261 8.132362 ACTTACTATGCAAATGTTCAAAACGAA 58.868 29.630 0.00 0.00 0.00 3.85
5051 5262 8.858003 TTACTATGCAAATGTTCAAAACGAAA 57.142 26.923 0.00 0.00 34.69 3.46
5052 5263 7.763172 ACTATGCAAATGTTCAAAACGAAAA 57.237 28.000 0.00 0.00 34.69 2.29
5053 5264 8.190888 ACTATGCAAATGTTCAAAACGAAAAA 57.809 26.923 0.00 0.00 34.69 1.94
5077 5288 8.422577 AAAATAAAAATAGAAGTCTGTGGGCT 57.577 30.769 0.00 0.00 0.00 5.19
5078 5289 9.528489 AAAATAAAAATAGAAGTCTGTGGGCTA 57.472 29.630 0.00 0.00 0.00 3.93
5079 5290 9.700831 AAATAAAAATAGAAGTCTGTGGGCTAT 57.299 29.630 0.00 0.00 0.00 2.97
5080 5291 9.700831 AATAAAAATAGAAGTCTGTGGGCTATT 57.299 29.630 0.00 0.00 34.29 1.73
5081 5292 9.700831 ATAAAAATAGAAGTCTGTGGGCTATTT 57.299 29.630 0.00 0.00 41.14 1.40
5082 5293 8.422577 AAAAATAGAAGTCTGTGGGCTATTTT 57.577 30.769 0.00 0.00 45.90 1.82
5083 5294 8.422577 AAAATAGAAGTCTGTGGGCTATTTTT 57.577 30.769 0.00 0.00 43.60 1.94
5084 5295 9.528489 AAAATAGAAGTCTGTGGGCTATTTTTA 57.472 29.630 0.00 0.00 43.60 1.52
5085 5296 8.507524 AATAGAAGTCTGTGGGCTATTTTTAC 57.492 34.615 0.00 0.00 30.00 2.01
5086 5297 6.128138 AGAAGTCTGTGGGCTATTTTTACT 57.872 37.500 0.00 0.00 0.00 2.24
5087 5298 7.253905 AGAAGTCTGTGGGCTATTTTTACTA 57.746 36.000 0.00 0.00 0.00 1.82
5088 5299 7.104290 AGAAGTCTGTGGGCTATTTTTACTAC 58.896 38.462 0.00 0.00 0.00 2.73
5089 5300 5.416947 AGTCTGTGGGCTATTTTTACTACG 58.583 41.667 0.00 0.00 0.00 3.51
5090 5301 4.033702 GTCTGTGGGCTATTTTTACTACGC 59.966 45.833 0.00 0.00 0.00 4.42
5091 5302 3.936453 CTGTGGGCTATTTTTACTACGCA 59.064 43.478 0.00 0.00 0.00 5.24
5092 5303 4.325119 TGTGGGCTATTTTTACTACGCAA 58.675 39.130 0.00 0.00 0.00 4.85
5093 5304 4.760715 TGTGGGCTATTTTTACTACGCAAA 59.239 37.500 0.00 0.00 0.00 3.68
5094 5305 5.090757 GTGGGCTATTTTTACTACGCAAAC 58.909 41.667 0.00 0.00 0.00 2.93
5095 5306 4.760715 TGGGCTATTTTTACTACGCAAACA 59.239 37.500 0.00 0.00 0.00 2.83
5096 5307 5.241064 TGGGCTATTTTTACTACGCAAACAA 59.759 36.000 0.00 0.00 0.00 2.83
5097 5308 6.151004 GGGCTATTTTTACTACGCAAACAAA 58.849 36.000 0.00 0.00 0.00 2.83
5098 5309 6.641723 GGGCTATTTTTACTACGCAAACAAAA 59.358 34.615 0.00 0.00 0.00 2.44
5099 5310 7.169476 GGGCTATTTTTACTACGCAAACAAAAA 59.831 33.333 0.00 0.00 33.90 1.94
5100 5311 8.211838 GGCTATTTTTACTACGCAAACAAAAAG 58.788 33.333 0.00 0.00 33.16 2.27
5101 5312 8.748582 GCTATTTTTACTACGCAAACAAAAAGT 58.251 29.630 0.00 0.00 33.16 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.821589 GACAGGAAGCTCGGCGGG 62.822 72.222 7.21 3.91 0.00 6.13
17 18 2.343163 CTAGACAGGAAGCTCGGCGG 62.343 65.000 7.21 0.00 0.00 6.13
18 19 1.064946 CTAGACAGGAAGCTCGGCG 59.935 63.158 0.00 0.00 0.00 6.46
19 20 1.227118 GCTAGACAGGAAGCTCGGC 60.227 63.158 0.00 0.00 35.80 5.54
20 21 2.499214 AGCTAGACAGGAAGCTCGG 58.501 57.895 0.00 0.00 45.92 4.63
42 43 2.892374 TCAGAGGTACGCATGTCAATG 58.108 47.619 0.00 0.00 36.82 2.82
43 44 3.610040 TTCAGAGGTACGCATGTCAAT 57.390 42.857 0.00 0.00 0.00 2.57
44 45 3.394674 TTTCAGAGGTACGCATGTCAA 57.605 42.857 0.00 0.00 0.00 3.18
45 46 3.394674 TTTTCAGAGGTACGCATGTCA 57.605 42.857 0.00 0.00 0.00 3.58
81 82 6.038050 GCACAAATCAAGAAATGGTCCAAAAA 59.962 34.615 0.00 0.00 0.00 1.94
82 83 5.526846 GCACAAATCAAGAAATGGTCCAAAA 59.473 36.000 0.00 0.00 0.00 2.44
83 84 5.055812 GCACAAATCAAGAAATGGTCCAAA 58.944 37.500 0.00 0.00 0.00 3.28
84 85 4.630111 GCACAAATCAAGAAATGGTCCAA 58.370 39.130 0.00 0.00 0.00 3.53
85 86 3.305267 CGCACAAATCAAGAAATGGTCCA 60.305 43.478 0.00 0.00 0.00 4.02
86 87 3.244976 CGCACAAATCAAGAAATGGTCC 58.755 45.455 0.00 0.00 0.00 4.46
87 88 3.670055 CACGCACAAATCAAGAAATGGTC 59.330 43.478 0.00 0.00 0.00 4.02
88 89 3.068024 ACACGCACAAATCAAGAAATGGT 59.932 39.130 0.00 0.00 0.00 3.55
89 90 3.641648 ACACGCACAAATCAAGAAATGG 58.358 40.909 0.00 0.00 0.00 3.16
90 91 4.289342 TGACACGCACAAATCAAGAAATG 58.711 39.130 0.00 0.00 0.00 2.32
91 92 4.566545 TGACACGCACAAATCAAGAAAT 57.433 36.364 0.00 0.00 0.00 2.17
92 93 4.536065 GATGACACGCACAAATCAAGAAA 58.464 39.130 0.00 0.00 0.00 2.52
93 94 3.058293 GGATGACACGCACAAATCAAGAA 60.058 43.478 0.00 0.00 0.00 2.52
94 95 2.483877 GGATGACACGCACAAATCAAGA 59.516 45.455 0.00 0.00 0.00 3.02
95 96 2.226200 TGGATGACACGCACAAATCAAG 59.774 45.455 0.00 0.00 0.00 3.02
96 97 2.225467 TGGATGACACGCACAAATCAA 58.775 42.857 0.00 0.00 0.00 2.57
97 98 1.889545 TGGATGACACGCACAAATCA 58.110 45.000 0.00 0.00 0.00 2.57
98 99 2.226437 AGTTGGATGACACGCACAAATC 59.774 45.455 0.00 0.00 0.00 2.17
99 100 2.030893 CAGTTGGATGACACGCACAAAT 60.031 45.455 0.00 0.00 0.00 2.32
100 101 1.333308 CAGTTGGATGACACGCACAAA 59.667 47.619 0.00 0.00 0.00 2.83
101 102 0.943673 CAGTTGGATGACACGCACAA 59.056 50.000 0.00 0.00 0.00 3.33
102 103 0.179059 ACAGTTGGATGACACGCACA 60.179 50.000 0.00 0.00 0.00 4.57
103 104 0.512952 GACAGTTGGATGACACGCAC 59.487 55.000 0.00 0.00 0.00 5.34
104 105 0.392706 AGACAGTTGGATGACACGCA 59.607 50.000 0.00 0.00 0.00 5.24
105 106 1.195448 CAAGACAGTTGGATGACACGC 59.805 52.381 0.00 0.00 0.00 5.34
106 107 1.195448 GCAAGACAGTTGGATGACACG 59.805 52.381 0.00 0.00 0.00 4.49
107 108 1.537202 GGCAAGACAGTTGGATGACAC 59.463 52.381 0.00 0.00 0.00 3.67
108 109 1.877680 CGGCAAGACAGTTGGATGACA 60.878 52.381 0.00 0.00 0.00 3.58
109 110 0.798776 CGGCAAGACAGTTGGATGAC 59.201 55.000 0.00 0.00 0.00 3.06
110 111 0.321564 CCGGCAAGACAGTTGGATGA 60.322 55.000 0.00 0.00 0.00 2.92
111 112 0.606401 ACCGGCAAGACAGTTGGATG 60.606 55.000 0.00 0.00 0.00 3.51
112 113 0.981183 TACCGGCAAGACAGTTGGAT 59.019 50.000 0.00 0.00 0.00 3.41
113 114 0.981183 ATACCGGCAAGACAGTTGGA 59.019 50.000 0.00 0.00 0.00 3.53
114 115 1.338674 TGATACCGGCAAGACAGTTGG 60.339 52.381 0.00 0.00 0.00 3.77
115 116 1.732259 GTGATACCGGCAAGACAGTTG 59.268 52.381 0.00 0.00 0.00 3.16
116 117 1.338769 GGTGATACCGGCAAGACAGTT 60.339 52.381 0.00 0.00 0.00 3.16
117 118 0.249398 GGTGATACCGGCAAGACAGT 59.751 55.000 0.00 0.00 0.00 3.55
118 119 0.462047 GGGTGATACCGGCAAGACAG 60.462 60.000 0.00 0.00 39.83 3.51
119 120 1.195442 TGGGTGATACCGGCAAGACA 61.195 55.000 0.00 0.00 39.83 3.41
120 121 0.743345 GTGGGTGATACCGGCAAGAC 60.743 60.000 0.00 0.00 39.83 3.01
121 122 1.600107 GTGGGTGATACCGGCAAGA 59.400 57.895 0.00 0.00 39.83 3.02
122 123 1.451387 GGTGGGTGATACCGGCAAG 60.451 63.158 0.00 0.00 39.83 4.01
123 124 2.672295 GGTGGGTGATACCGGCAA 59.328 61.111 0.00 0.00 39.83 4.52
128 129 1.636148 TATAGCCGGTGGGTGATACC 58.364 55.000 1.90 0.00 37.60 2.73
129 130 2.677037 GCATATAGCCGGTGGGTGATAC 60.677 54.545 1.90 0.00 37.23 2.24
130 131 1.553248 GCATATAGCCGGTGGGTGATA 59.447 52.381 1.90 0.00 37.23 2.15
131 132 0.324943 GCATATAGCCGGTGGGTGAT 59.675 55.000 1.90 0.00 37.23 3.06
132 133 1.752198 GCATATAGCCGGTGGGTGA 59.248 57.895 1.90 0.00 37.23 4.02
133 134 4.379174 GCATATAGCCGGTGGGTG 57.621 61.111 1.90 0.00 37.23 4.61
142 143 2.359975 GGGGTGGCGGCATATAGC 60.360 66.667 17.19 0.50 44.65 2.97
143 144 2.185310 GAGGGGGTGGCGGCATATAG 62.185 65.000 17.19 0.00 0.00 1.31
144 145 2.122144 AGGGGGTGGCGGCATATA 60.122 61.111 17.19 0.00 0.00 0.86
145 146 3.570212 GAGGGGGTGGCGGCATAT 61.570 66.667 17.19 0.00 0.00 1.78
152 153 2.774351 ATAGGCTGAGGGGGTGGC 60.774 66.667 0.00 0.00 0.00 5.01
153 154 2.455565 CCATAGGCTGAGGGGGTGG 61.456 68.421 0.00 0.00 0.00 4.61
154 155 2.455565 CCCATAGGCTGAGGGGGTG 61.456 68.421 16.07 0.00 36.74 4.61
155 156 2.039405 CCCATAGGCTGAGGGGGT 60.039 66.667 16.07 0.00 36.74 4.95
165 166 0.462047 GTGTCGAACTGCCCCATAGG 60.462 60.000 0.00 0.00 39.47 2.57
166 167 0.537188 AGTGTCGAACTGCCCCATAG 59.463 55.000 0.00 0.00 37.88 2.23
167 168 1.855295 TAGTGTCGAACTGCCCCATA 58.145 50.000 9.58 0.00 40.26 2.74
168 169 1.204146 ATAGTGTCGAACTGCCCCAT 58.796 50.000 9.58 0.00 40.26 4.00
169 170 0.981183 AATAGTGTCGAACTGCCCCA 59.019 50.000 9.58 0.00 40.26 4.96
170 171 1.737793 CAAATAGTGTCGAACTGCCCC 59.262 52.381 9.58 0.00 40.26 5.80
171 172 2.415512 GTCAAATAGTGTCGAACTGCCC 59.584 50.000 9.58 0.00 40.26 5.36
172 173 2.092211 CGTCAAATAGTGTCGAACTGCC 59.908 50.000 9.58 0.00 40.64 4.85
173 174 2.729882 ACGTCAAATAGTGTCGAACTGC 59.270 45.455 9.58 0.00 40.64 4.40
174 175 3.364023 GGACGTCAAATAGTGTCGAACTG 59.636 47.826 18.91 0.00 40.64 3.16
175 176 3.005050 TGGACGTCAAATAGTGTCGAACT 59.995 43.478 18.91 0.00 40.64 3.01
176 177 3.311106 TGGACGTCAAATAGTGTCGAAC 58.689 45.455 18.91 0.00 40.64 3.95
177 178 3.646611 TGGACGTCAAATAGTGTCGAA 57.353 42.857 18.91 0.00 40.64 3.71
178 179 3.428452 GGATGGACGTCAAATAGTGTCGA 60.428 47.826 18.91 0.00 40.64 4.20
179 180 2.858344 GGATGGACGTCAAATAGTGTCG 59.142 50.000 18.91 0.00 43.31 4.35
180 181 3.195661 GGGATGGACGTCAAATAGTGTC 58.804 50.000 18.91 0.00 0.00 3.67
181 182 2.093128 GGGGATGGACGTCAAATAGTGT 60.093 50.000 18.91 0.00 0.00 3.55
182 183 2.170607 AGGGGATGGACGTCAAATAGTG 59.829 50.000 18.91 0.00 0.00 2.74
183 184 2.478292 AGGGGATGGACGTCAAATAGT 58.522 47.619 18.91 0.00 0.00 2.12
184 185 3.560636 AAGGGGATGGACGTCAAATAG 57.439 47.619 18.91 0.00 0.00 1.73
185 186 3.521937 AGAAAGGGGATGGACGTCAAATA 59.478 43.478 18.91 0.44 0.00 1.40
186 187 2.308866 AGAAAGGGGATGGACGTCAAAT 59.691 45.455 18.91 10.35 0.00 2.32
187 188 1.702957 AGAAAGGGGATGGACGTCAAA 59.297 47.619 18.91 5.15 0.00 2.69
188 189 1.278127 GAGAAAGGGGATGGACGTCAA 59.722 52.381 18.91 6.46 0.00 3.18
189 190 0.902531 GAGAAAGGGGATGGACGTCA 59.097 55.000 18.91 3.91 0.00 4.35
190 191 1.134670 CAGAGAAAGGGGATGGACGTC 60.135 57.143 7.13 7.13 0.00 4.34
191 192 0.905357 CAGAGAAAGGGGATGGACGT 59.095 55.000 0.00 0.00 0.00 4.34
192 193 0.905357 ACAGAGAAAGGGGATGGACG 59.095 55.000 0.00 0.00 0.00 4.79
193 194 1.210722 GGACAGAGAAAGGGGATGGAC 59.789 57.143 0.00 0.00 0.00 4.02
194 195 1.203428 TGGACAGAGAAAGGGGATGGA 60.203 52.381 0.00 0.00 0.00 3.41
195 196 1.289160 TGGACAGAGAAAGGGGATGG 58.711 55.000 0.00 0.00 0.00 3.51
196 197 2.716217 GTTGGACAGAGAAAGGGGATG 58.284 52.381 0.00 0.00 0.00 3.51
197 198 1.279271 CGTTGGACAGAGAAAGGGGAT 59.721 52.381 0.00 0.00 0.00 3.85
198 199 0.685097 CGTTGGACAGAGAAAGGGGA 59.315 55.000 0.00 0.00 0.00 4.81
199 200 0.685097 TCGTTGGACAGAGAAAGGGG 59.315 55.000 0.00 0.00 0.00 4.79
200 201 1.797025 GTCGTTGGACAGAGAAAGGG 58.203 55.000 0.00 0.00 42.91 3.95
201 202 1.000607 TCGTCGTTGGACAGAGAAAGG 60.001 52.381 0.00 0.00 43.61 3.11
202 203 2.417339 TCGTCGTTGGACAGAGAAAG 57.583 50.000 0.00 0.00 43.61 2.62
203 204 4.482386 CTTATCGTCGTTGGACAGAGAAA 58.518 43.478 0.00 0.00 43.61 2.52
204 205 3.672511 GCTTATCGTCGTTGGACAGAGAA 60.673 47.826 0.00 0.00 43.61 2.87
205 206 2.159421 GCTTATCGTCGTTGGACAGAGA 60.159 50.000 0.00 0.00 43.61 3.10
206 207 2.186076 GCTTATCGTCGTTGGACAGAG 58.814 52.381 0.00 0.00 43.61 3.35
207 208 1.135199 GGCTTATCGTCGTTGGACAGA 60.135 52.381 0.00 0.00 43.61 3.41
208 209 1.278238 GGCTTATCGTCGTTGGACAG 58.722 55.000 0.00 0.00 43.61 3.51
209 210 0.457166 CGGCTTATCGTCGTTGGACA 60.457 55.000 0.00 0.00 43.61 4.02
210 211 0.179156 TCGGCTTATCGTCGTTGGAC 60.179 55.000 0.00 0.00 42.47 4.02
211 212 0.742505 ATCGGCTTATCGTCGTTGGA 59.257 50.000 0.00 0.00 42.47 3.53
212 213 0.852777 CATCGGCTTATCGTCGTTGG 59.147 55.000 0.00 0.00 42.47 3.77
213 214 1.517276 GACATCGGCTTATCGTCGTTG 59.483 52.381 0.00 0.00 43.91 4.10
214 215 1.836383 GACATCGGCTTATCGTCGTT 58.164 50.000 0.00 0.00 42.47 3.85
215 216 0.316772 CGACATCGGCTTATCGTCGT 60.317 55.000 0.00 0.00 43.26 4.34
216 217 2.410855 CGACATCGGCTTATCGTCG 58.589 57.895 0.00 0.00 42.79 5.12
217 218 0.317938 AGCGACATCGGCTTATCGTC 60.318 55.000 3.08 0.00 40.23 4.20
218 219 0.949397 TAGCGACATCGGCTTATCGT 59.051 50.000 3.08 0.00 40.23 3.73
219 220 1.328439 GTAGCGACATCGGCTTATCG 58.672 55.000 3.08 0.00 40.23 2.92
220 221 2.052157 GTGTAGCGACATCGGCTTATC 58.948 52.381 2.07 0.00 38.04 1.75
221 222 1.407618 TGTGTAGCGACATCGGCTTAT 59.592 47.619 2.07 0.00 38.04 1.73
222 223 0.812549 TGTGTAGCGACATCGGCTTA 59.187 50.000 2.07 0.00 38.04 3.09
223 224 0.175760 ATGTGTAGCGACATCGGCTT 59.824 50.000 2.07 0.00 38.04 4.35
224 225 0.249073 GATGTGTAGCGACATCGGCT 60.249 55.000 2.07 3.74 42.09 5.52
225 226 2.217112 GATGTGTAGCGACATCGGC 58.783 57.895 2.07 0.00 42.09 5.54
229 230 2.379005 TGAGGAGATGTGTAGCGACAT 58.621 47.619 2.07 0.53 39.34 3.06
230 231 1.834188 TGAGGAGATGTGTAGCGACA 58.166 50.000 0.00 0.00 0.00 4.35
231 232 2.603412 CGATGAGGAGATGTGTAGCGAC 60.603 54.545 0.00 0.00 0.00 5.19
232 233 1.604278 CGATGAGGAGATGTGTAGCGA 59.396 52.381 0.00 0.00 0.00 4.93
233 234 1.928152 GCGATGAGGAGATGTGTAGCG 60.928 57.143 0.00 0.00 0.00 4.26
234 235 1.777101 GCGATGAGGAGATGTGTAGC 58.223 55.000 0.00 0.00 0.00 3.58
235 236 1.928152 GCGCGATGAGGAGATGTGTAG 60.928 57.143 12.10 0.00 0.00 2.74
236 237 0.030773 GCGCGATGAGGAGATGTGTA 59.969 55.000 12.10 0.00 0.00 2.90
237 238 1.227089 GCGCGATGAGGAGATGTGT 60.227 57.895 12.10 0.00 0.00 3.72
238 239 1.953138 GGCGCGATGAGGAGATGTG 60.953 63.158 12.10 0.00 0.00 3.21
239 240 2.419198 GGCGCGATGAGGAGATGT 59.581 61.111 12.10 0.00 0.00 3.06
240 241 2.356793 GGGCGCGATGAGGAGATG 60.357 66.667 12.10 0.00 0.00 2.90
241 242 2.093537 GAAGGGCGCGATGAGGAGAT 62.094 60.000 12.10 0.00 0.00 2.75
242 243 2.759973 AAGGGCGCGATGAGGAGA 60.760 61.111 12.10 0.00 0.00 3.71
243 244 2.279784 GAAGGGCGCGATGAGGAG 60.280 66.667 12.10 0.00 0.00 3.69
244 245 3.849951 GGAAGGGCGCGATGAGGA 61.850 66.667 12.10 0.00 0.00 3.71
245 246 3.798954 GAGGAAGGGCGCGATGAGG 62.799 68.421 12.10 0.00 0.00 3.86
246 247 2.279784 GAGGAAGGGCGCGATGAG 60.280 66.667 12.10 0.00 0.00 2.90
247 248 3.849951 GGAGGAAGGGCGCGATGA 61.850 66.667 12.10 0.00 0.00 2.92
248 249 4.918201 GGGAGGAAGGGCGCGATG 62.918 72.222 12.10 0.00 0.00 3.84
256 257 4.148825 CACGGAGCGGGAGGAAGG 62.149 72.222 0.00 0.00 28.17 3.46
257 258 2.450479 AAACACGGAGCGGGAGGAAG 62.450 60.000 0.00 0.00 32.98 3.46
258 259 2.444700 GAAACACGGAGCGGGAGGAA 62.445 60.000 0.00 0.00 32.98 3.36
259 260 2.920912 AAACACGGAGCGGGAGGA 60.921 61.111 0.00 0.00 32.98 3.71
260 261 2.434359 GAAACACGGAGCGGGAGG 60.434 66.667 0.00 0.00 32.98 4.30
261 262 1.004918 AAGAAACACGGAGCGGGAG 60.005 57.895 0.00 0.00 32.98 4.30
262 263 1.005394 GAAGAAACACGGAGCGGGA 60.005 57.895 0.00 0.00 32.98 5.14
263 264 0.602905 AAGAAGAAACACGGAGCGGG 60.603 55.000 0.00 0.00 35.82 6.13
264 265 0.790814 GAAGAAGAAACACGGAGCGG 59.209 55.000 0.00 0.00 0.00 5.52
265 266 0.790814 GGAAGAAGAAACACGGAGCG 59.209 55.000 0.00 0.00 0.00 5.03
266 267 1.157585 GGGAAGAAGAAACACGGAGC 58.842 55.000 0.00 0.00 0.00 4.70
267 268 1.610886 GGGGGAAGAAGAAACACGGAG 60.611 57.143 0.00 0.00 0.00 4.63
268 269 0.399075 GGGGGAAGAAGAAACACGGA 59.601 55.000 0.00 0.00 0.00 4.69
269 270 0.400594 AGGGGGAAGAAGAAACACGG 59.599 55.000 0.00 0.00 0.00 4.94
270 271 1.202770 ACAGGGGGAAGAAGAAACACG 60.203 52.381 0.00 0.00 0.00 4.49
271 272 2.158667 TCACAGGGGGAAGAAGAAACAC 60.159 50.000 0.00 0.00 0.00 3.32
272 273 2.131854 TCACAGGGGGAAGAAGAAACA 58.868 47.619 0.00 0.00 0.00 2.83
273 274 2.951229 TCACAGGGGGAAGAAGAAAC 57.049 50.000 0.00 0.00 0.00 2.78
274 275 3.766545 CAATCACAGGGGGAAGAAGAAA 58.233 45.455 0.00 0.00 0.00 2.52
275 276 2.555227 GCAATCACAGGGGGAAGAAGAA 60.555 50.000 0.00 0.00 0.00 2.52
276 277 1.004745 GCAATCACAGGGGGAAGAAGA 59.995 52.381 0.00 0.00 0.00 2.87
277 278 1.272092 TGCAATCACAGGGGGAAGAAG 60.272 52.381 0.00 0.00 0.00 2.85
314 315 1.152589 TTGTGCCAGTGGGATGCAA 60.153 52.632 12.15 6.97 36.65 4.08
325 326 1.827789 GGGTGAAGTGCTTGTGCCA 60.828 57.895 0.00 0.00 38.71 4.92
343 344 1.202769 TTCACCCCCGGTTCCTAAGG 61.203 60.000 0.00 0.00 31.02 2.69
349 350 1.303091 CGAATGTTCACCCCCGGTTC 61.303 60.000 0.00 0.00 31.02 3.62
364 365 5.952347 AATGGAAGGTCTAGGTAACGAAT 57.048 39.130 0.00 0.00 46.39 3.34
403 404 4.340381 TCTGTAGACCGGGAGTATTTTAGC 59.660 45.833 6.32 0.00 0.00 3.09
450 451 2.188994 GCTCGCTGGCTGGATTCT 59.811 61.111 0.00 0.00 0.00 2.40
485 490 0.381801 AAAGCCTGCGCCGATTTATG 59.618 50.000 4.18 0.00 34.57 1.90
548 553 2.610859 GGGGAGGGAAGTGAGGCA 60.611 66.667 0.00 0.00 0.00 4.75
549 554 3.412408 GGGGGAGGGAAGTGAGGC 61.412 72.222 0.00 0.00 0.00 4.70
781 797 3.186909 CTCGCTGACGGAATAAATCACA 58.813 45.455 0.00 0.00 40.63 3.58
877 893 3.006940 ACATGGTCACGCACGATTATTT 58.993 40.909 0.00 0.00 0.00 1.40
939 955 1.595058 TTCCTCCTCCTCCCTCCTCC 61.595 65.000 0.00 0.00 0.00 4.30
941 957 0.858139 ACTTCCTCCTCCTCCCTCCT 60.858 60.000 0.00 0.00 0.00 3.69
942 958 0.043485 AACTTCCTCCTCCTCCCTCC 59.957 60.000 0.00 0.00 0.00 4.30
943 959 1.199615 CAACTTCCTCCTCCTCCCTC 58.800 60.000 0.00 0.00 0.00 4.30
944 960 0.793617 TCAACTTCCTCCTCCTCCCT 59.206 55.000 0.00 0.00 0.00 4.20
945 961 1.199615 CTCAACTTCCTCCTCCTCCC 58.800 60.000 0.00 0.00 0.00 4.30
946 962 1.945580 ACTCAACTTCCTCCTCCTCC 58.054 55.000 0.00 0.00 0.00 4.30
947 963 3.169908 AGAACTCAACTTCCTCCTCCTC 58.830 50.000 0.00 0.00 0.00 3.71
948 964 3.268034 AGAACTCAACTTCCTCCTCCT 57.732 47.619 0.00 0.00 0.00 3.69
949 965 3.071747 ACAAGAACTCAACTTCCTCCTCC 59.928 47.826 0.00 0.00 0.00 4.30
950 966 4.344359 ACAAGAACTCAACTTCCTCCTC 57.656 45.455 0.00 0.00 0.00 3.71
951 967 4.455606 CAACAAGAACTCAACTTCCTCCT 58.544 43.478 0.00 0.00 0.00 3.69
1095 1111 9.961265 AAGGTAAAGTGAAAATAAAAGTAGCAC 57.039 29.630 0.00 0.00 0.00 4.40
1129 1149 1.924731 ACTGGGTCGATGAGAACAGA 58.075 50.000 0.00 0.00 38.65 3.41
1135 1155 1.134788 GGTGGTAACTGGGTCGATGAG 60.135 57.143 0.00 0.00 37.61 2.90
1139 1159 1.189524 CCTGGTGGTAACTGGGTCGA 61.190 60.000 0.00 0.00 37.61 4.20
1141 1161 0.838987 TCCCTGGTGGTAACTGGGTC 60.839 60.000 8.43 0.00 39.48 4.46
1142 1162 0.402272 TTCCCTGGTGGTAACTGGGT 60.402 55.000 8.43 0.00 39.48 4.51
1143 1163 0.999712 ATTCCCTGGTGGTAACTGGG 59.000 55.000 2.65 2.65 39.68 4.45
1144 1164 1.633432 TCATTCCCTGGTGGTAACTGG 59.367 52.381 0.00 0.00 34.77 4.00
1147 1167 3.763057 AGTTTCATTCCCTGGTGGTAAC 58.237 45.455 0.00 0.00 34.77 2.50
1148 1168 4.141135 TCAAGTTTCATTCCCTGGTGGTAA 60.141 41.667 0.00 0.00 34.77 2.85
1149 1169 3.396276 TCAAGTTTCATTCCCTGGTGGTA 59.604 43.478 0.00 0.00 34.77 3.25
1150 1170 2.176798 TCAAGTTTCATTCCCTGGTGGT 59.823 45.455 0.00 0.00 34.77 4.16
1151 1171 2.558359 GTCAAGTTTCATTCCCTGGTGG 59.442 50.000 0.00 0.00 0.00 4.61
1152 1172 2.558359 GGTCAAGTTTCATTCCCTGGTG 59.442 50.000 0.00 0.00 0.00 4.17
1153 1173 2.490902 GGGTCAAGTTTCATTCCCTGGT 60.491 50.000 0.00 0.00 32.89 4.00
1154 1174 2.171003 GGGTCAAGTTTCATTCCCTGG 58.829 52.381 0.00 0.00 32.89 4.45
1155 1175 1.812571 CGGGTCAAGTTTCATTCCCTG 59.187 52.381 0.00 0.00 33.41 4.45
1156 1176 1.271926 CCGGGTCAAGTTTCATTCCCT 60.272 52.381 0.00 0.00 33.41 4.20
1157 1177 1.173913 CCGGGTCAAGTTTCATTCCC 58.826 55.000 0.00 0.00 0.00 3.97
1158 1178 1.905637 ACCGGGTCAAGTTTCATTCC 58.094 50.000 6.32 0.00 0.00 3.01
1159 1179 3.189910 GGTAACCGGGTCAAGTTTCATTC 59.810 47.826 6.32 0.00 0.00 2.67
1160 1180 3.151554 GGTAACCGGGTCAAGTTTCATT 58.848 45.455 6.32 0.00 0.00 2.57
1161 1181 2.106857 TGGTAACCGGGTCAAGTTTCAT 59.893 45.455 6.32 0.00 0.00 2.57
1162 1182 1.489649 TGGTAACCGGGTCAAGTTTCA 59.510 47.619 6.32 0.00 0.00 2.69
1163 1183 1.875514 GTGGTAACCGGGTCAAGTTTC 59.124 52.381 6.32 0.00 0.00 2.78
1164 1184 1.477377 GGTGGTAACCGGGTCAAGTTT 60.477 52.381 6.32 0.00 36.51 2.66
1165 1185 0.109153 GGTGGTAACCGGGTCAAGTT 59.891 55.000 6.32 0.00 36.51 2.66
1166 1186 1.756665 GGTGGTAACCGGGTCAAGT 59.243 57.895 6.32 0.00 36.51 3.16
1167 1187 4.707791 GGTGGTAACCGGGTCAAG 57.292 61.111 6.32 0.00 36.51 3.02
1207 1227 8.768397 AGGTCAAACATTTGGTCTATATGACTA 58.232 33.333 4.58 0.00 44.74 2.59
1289 1309 8.960591 GCTCCTGTAATATTAATGGCATGTATT 58.039 33.333 0.00 9.14 0.00 1.89
1307 1327 6.737720 ATCACATAATCAGAAGCTCCTGTA 57.262 37.500 0.00 0.00 35.71 2.74
1309 1329 5.821470 ACAATCACATAATCAGAAGCTCCTG 59.179 40.000 0.00 0.00 35.55 3.86
1315 1335 9.376075 ACAGAAGTACAATCACATAATCAGAAG 57.624 33.333 0.00 0.00 0.00 2.85
1341 1361 8.714179 CAGTAAATTTGAACGGTATGTACTTCA 58.286 33.333 0.00 0.00 0.00 3.02
1345 1365 9.745323 GTTACAGTAAATTTGAACGGTATGTAC 57.255 33.333 0.00 0.00 0.00 2.90
1347 1367 7.662669 AGGTTACAGTAAATTTGAACGGTATGT 59.337 33.333 0.00 0.00 0.00 2.29
1348 1368 8.036273 AGGTTACAGTAAATTTGAACGGTATG 57.964 34.615 0.00 0.00 0.00 2.39
1352 1372 8.259049 TCATAGGTTACAGTAAATTTGAACGG 57.741 34.615 0.00 0.00 0.00 4.44
1353 1373 8.932791 ACTCATAGGTTACAGTAAATTTGAACG 58.067 33.333 0.00 0.00 0.00 3.95
1368 1390 4.159693 ACATGTTCTCGCACTCATAGGTTA 59.840 41.667 0.00 0.00 0.00 2.85
1382 1409 1.369625 CGGCCCAACTACATGTTCTC 58.630 55.000 2.30 0.00 36.63 2.87
1399 1426 1.066143 AGCAAAGTCATAGTGTCCCGG 60.066 52.381 0.00 0.00 0.00 5.73
1401 1428 2.359900 CCAGCAAAGTCATAGTGTCCC 58.640 52.381 0.00 0.00 0.00 4.46
1440 1468 4.223477 AGTCCATGCCTGCAAAAATAATGT 59.777 37.500 0.00 0.00 0.00 2.71
1444 1472 3.119531 CGAAGTCCATGCCTGCAAAAATA 60.120 43.478 0.00 0.00 0.00 1.40
1495 1523 2.125106 GCCACCGCGATCTTTCCT 60.125 61.111 8.23 0.00 0.00 3.36
1516 1544 2.393768 GCACATGACAGTGAGGGCG 61.394 63.158 0.00 0.00 42.05 6.13
1709 1737 3.007831 GGCCCTTTTTGTCATGGAATCAA 59.992 43.478 0.00 0.00 0.00 2.57
1747 1775 4.232188 AGATGCAGAATGACATGTTCCT 57.768 40.909 0.00 0.00 39.69 3.36
1756 1784 7.339976 TGTTCCATCAAATTAGATGCAGAATGA 59.660 33.333 0.00 0.00 43.15 2.57
1762 1790 6.433716 TGAACTGTTCCATCAAATTAGATGCA 59.566 34.615 17.26 0.00 43.15 3.96
1962 1991 4.773674 AGATGGCAGAATGAAATGTTCCAA 59.226 37.500 0.00 0.00 39.69 3.53
2033 2062 8.565896 AGAACAGATGATGCAACAAAGTATTA 57.434 30.769 0.00 0.00 0.00 0.98
2077 2106 1.014044 TCGCTTGCGTCTGATGGAAC 61.014 55.000 14.70 0.00 0.00 3.62
2088 2117 0.989164 TCTGTACGAAATCGCTTGCG 59.011 50.000 8.87 8.87 44.43 4.85
2363 2400 5.871396 AAGTCTCTCACTACCAAAGTTCA 57.129 39.130 0.00 0.00 35.76 3.18
2395 2432 7.210174 TCTCGAAAGGTTATCCTGTGAATATG 58.790 38.462 0.00 0.00 44.35 1.78
2558 2596 7.776933 TCTCAAATGCATAGATGTACAGAAC 57.223 36.000 0.00 0.00 0.00 3.01
2760 2798 9.267084 GAGCTATTTAGTGCTTAGCTTTCTAAT 57.733 33.333 5.60 2.18 46.47 1.73
2925 2968 5.349543 GTCAAGAATGGCAAAAATGGATGAC 59.650 40.000 0.00 0.00 0.00 3.06
2987 3030 8.136563 TGTTGTGGTAGTACCTGTTATATCAA 57.863 34.615 20.07 9.30 39.58 2.57
3194 3237 7.360101 GCAACACGAGTTATTTACTGTGAGATT 60.360 37.037 0.00 0.00 38.32 2.40
3199 3242 4.212425 TGGCAACACGAGTTATTTACTGTG 59.788 41.667 0.00 0.00 46.17 3.66
3224 3267 5.762218 GCCATATGGATTGATAGGTATCTGC 59.238 44.000 26.47 0.00 37.39 4.26
3519 3562 6.283694 TGAGCATGTCAATATGAGTACCTTC 58.716 40.000 0.00 0.00 29.64 3.46
3559 3602 8.725405 ACCGTGATTATTATGTAATGTCAACA 57.275 30.769 0.00 0.00 0.00 3.33
3592 3638 1.421646 CCTAAAGGGGGCAGATCGAAT 59.578 52.381 0.00 0.00 0.00 3.34
3650 3696 7.176690 TCTGTGACATCAATGTAGTCTCTTACA 59.823 37.037 0.00 4.83 41.95 2.41
3665 3711 4.393990 GCATCAACAAGATCTGTGACATCA 59.606 41.667 0.00 0.00 38.67 3.07
3768 3814 3.002862 GTCCGCACGGCATGATTATAAAA 59.997 43.478 3.66 0.00 34.68 1.52
3810 3857 7.360946 GCGAGTGTGTGGTCTTAAATAGATTTT 60.361 37.037 0.00 0.00 34.79 1.82
3869 3916 4.017407 ACTCCTTCACTGACCTACCTGATA 60.017 45.833 0.00 0.00 0.00 2.15
4106 4153 1.271379 TCTGTTGAACGTACCGAGCAT 59.729 47.619 0.00 0.00 0.00 3.79
4116 4163 0.934496 TGGCGAACTTCTGTTGAACG 59.066 50.000 0.00 0.00 36.39 3.95
4147 4194 1.284313 TATCACTGCACATGGACCCA 58.716 50.000 0.00 0.00 0.00 4.51
4212 4260 3.121929 ACATCACTATCCTCCTGTGGT 57.878 47.619 0.00 0.00 33.04 4.16
4219 4267 5.107298 GCTGCGAAATAACATCACTATCCTC 60.107 44.000 0.00 0.00 0.00 3.71
4253 4304 1.342819 AGCGGCCATTCTCTGTATCTC 59.657 52.381 2.24 0.00 0.00 2.75
4265 4316 1.751437 GGTTTCTTCTAAGCGGCCAT 58.249 50.000 2.24 0.00 0.00 4.40
4266 4317 0.672401 CGGTTTCTTCTAAGCGGCCA 60.672 55.000 2.24 0.00 43.20 5.36
4267 4318 2.087344 CGGTTTCTTCTAAGCGGCC 58.913 57.895 0.00 0.00 43.20 6.13
4349 4412 5.861787 CGTATTTGTGTCATATATGCCTCGA 59.138 40.000 7.92 0.00 0.00 4.04
4350 4413 5.861787 TCGTATTTGTGTCATATATGCCTCG 59.138 40.000 7.92 3.40 0.00 4.63
4390 4457 4.142795 CCTCGTACATGAGATCCATCTACG 60.143 50.000 17.60 17.60 45.40 3.51
4397 4464 3.136763 TCGTACCTCGTACATGAGATCC 58.863 50.000 0.00 0.00 38.77 3.36
4472 4555 3.674997 TCTGCTGCGGTTAGAGATTTTT 58.325 40.909 8.55 0.00 0.00 1.94
4473 4556 3.334583 TCTGCTGCGGTTAGAGATTTT 57.665 42.857 8.55 0.00 0.00 1.82
4474 4557 3.550437 ATCTGCTGCGGTTAGAGATTT 57.450 42.857 8.55 0.00 0.00 2.17
4490 4573 2.812591 AGTGAAGTGAGCAGCAAATCTG 59.187 45.455 0.00 0.00 45.62 2.90
4491 4574 3.137446 AGTGAAGTGAGCAGCAAATCT 57.863 42.857 0.00 0.00 0.00 2.40
4492 4575 3.251729 TCAAGTGAAGTGAGCAGCAAATC 59.748 43.478 0.00 0.00 0.00 2.17
4494 4577 2.355756 GTCAAGTGAAGTGAGCAGCAAA 59.644 45.455 0.00 0.00 0.00 3.68
4495 4578 1.942657 GTCAAGTGAAGTGAGCAGCAA 59.057 47.619 0.00 0.00 0.00 3.91
4497 4580 0.871057 GGTCAAGTGAAGTGAGCAGC 59.129 55.000 0.00 0.00 41.94 5.25
4524 4722 1.271379 TGAGTAGCCCTTGTTTCCTGC 60.271 52.381 0.00 0.00 0.00 4.85
4554 4752 3.641436 CCAGTAGCCCTTGTTTCCTTTTT 59.359 43.478 0.00 0.00 0.00 1.94
4555 4753 3.230976 CCAGTAGCCCTTGTTTCCTTTT 58.769 45.455 0.00 0.00 0.00 2.27
4556 4754 2.177016 ACCAGTAGCCCTTGTTTCCTTT 59.823 45.455 0.00 0.00 0.00 3.11
4557 4755 1.780919 ACCAGTAGCCCTTGTTTCCTT 59.219 47.619 0.00 0.00 0.00 3.36
4558 4756 1.446016 ACCAGTAGCCCTTGTTTCCT 58.554 50.000 0.00 0.00 0.00 3.36
4559 4757 2.287977 AACCAGTAGCCCTTGTTTCC 57.712 50.000 0.00 0.00 0.00 3.13
4560 4758 3.798889 GCAAAACCAGTAGCCCTTGTTTC 60.799 47.826 4.35 0.00 37.89 2.78
4561 4759 2.102420 GCAAAACCAGTAGCCCTTGTTT 59.898 45.455 0.00 0.00 39.89 2.83
4562 4760 1.686587 GCAAAACCAGTAGCCCTTGTT 59.313 47.619 0.00 0.00 30.68 2.83
4563 4761 1.328279 GCAAAACCAGTAGCCCTTGT 58.672 50.000 0.00 0.00 0.00 3.16
4564 4762 1.327303 TGCAAAACCAGTAGCCCTTG 58.673 50.000 0.00 0.00 0.00 3.61
4565 4763 2.309136 ATGCAAAACCAGTAGCCCTT 57.691 45.000 0.00 0.00 0.00 3.95
4566 4764 3.669939 ATATGCAAAACCAGTAGCCCT 57.330 42.857 0.00 0.00 0.00 5.19
4567 4765 4.736126 AAATATGCAAAACCAGTAGCCC 57.264 40.909 0.00 0.00 0.00 5.19
4592 4790 1.457346 AATTCAGCCTTTCCTGCGAG 58.543 50.000 0.00 0.00 32.87 5.03
4694 4899 7.931948 GGCTTACCAGCTCAGAATTATTAGTAA 59.068 37.037 0.00 0.00 46.44 2.24
4707 4912 1.644509 TCAAGAGGCTTACCAGCTCA 58.355 50.000 0.00 0.00 46.44 4.26
4714 4919 5.810587 TGAATGTACGAATCAAGAGGCTTAC 59.189 40.000 0.00 0.00 0.00 2.34
4770 4979 2.736670 ACTTTGTTTCAGGGAGCTGT 57.263 45.000 0.00 0.00 0.00 4.40
4776 4985 4.159506 TGGTCAAGAAACTTTGTTTCAGGG 59.840 41.667 20.58 11.77 0.00 4.45
4789 4998 4.909696 TCTGCGAAATTTGGTCAAGAAA 57.090 36.364 0.00 0.00 0.00 2.52
4799 5008 2.832672 GCCGAGAATCTGCGAAATTT 57.167 45.000 0.00 0.00 35.14 1.82
4816 5025 1.943340 GGAGAAGAAACCATGATCGCC 59.057 52.381 0.00 0.00 0.00 5.54
4863 5074 0.107654 ACCATTCGTAAGGGCAGAGC 60.108 55.000 0.00 0.00 35.24 4.09
4893 5104 9.822727 AATCCTCCCTCAGTAAAGAAATAAAAA 57.177 29.630 0.00 0.00 0.00 1.94
4894 5105 9.462606 GAATCCTCCCTCAGTAAAGAAATAAAA 57.537 33.333 0.00 0.00 0.00 1.52
4895 5106 8.611257 TGAATCCTCCCTCAGTAAAGAAATAAA 58.389 33.333 0.00 0.00 0.00 1.40
4896 5107 8.158025 TGAATCCTCCCTCAGTAAAGAAATAA 57.842 34.615 0.00 0.00 0.00 1.40
4897 5108 7.749377 TGAATCCTCCCTCAGTAAAGAAATA 57.251 36.000 0.00 0.00 0.00 1.40
4898 5109 6.642733 TGAATCCTCCCTCAGTAAAGAAAT 57.357 37.500 0.00 0.00 0.00 2.17
4899 5110 6.448369 TTGAATCCTCCCTCAGTAAAGAAA 57.552 37.500 0.00 0.00 0.00 2.52
4900 5111 6.238648 GTTTGAATCCTCCCTCAGTAAAGAA 58.761 40.000 0.00 0.00 0.00 2.52
4901 5112 5.568825 CGTTTGAATCCTCCCTCAGTAAAGA 60.569 44.000 0.00 0.00 0.00 2.52
4902 5113 4.631813 CGTTTGAATCCTCCCTCAGTAAAG 59.368 45.833 0.00 0.00 0.00 1.85
4903 5114 4.041198 ACGTTTGAATCCTCCCTCAGTAAA 59.959 41.667 0.00 0.00 0.00 2.01
4904 5115 3.581332 ACGTTTGAATCCTCCCTCAGTAA 59.419 43.478 0.00 0.00 0.00 2.24
4905 5116 3.056107 CACGTTTGAATCCTCCCTCAGTA 60.056 47.826 0.00 0.00 0.00 2.74
4906 5117 1.978580 ACGTTTGAATCCTCCCTCAGT 59.021 47.619 0.00 0.00 0.00 3.41
4907 5118 2.289694 ACACGTTTGAATCCTCCCTCAG 60.290 50.000 0.00 0.00 0.00 3.35
4908 5119 1.697432 ACACGTTTGAATCCTCCCTCA 59.303 47.619 0.00 0.00 0.00 3.86
4909 5120 2.474410 ACACGTTTGAATCCTCCCTC 57.526 50.000 0.00 0.00 0.00 4.30
4910 5121 2.951229 AACACGTTTGAATCCTCCCT 57.049 45.000 0.00 0.00 0.00 4.20
4911 5122 4.698304 TCATTAACACGTTTGAATCCTCCC 59.302 41.667 0.00 0.00 0.00 4.30
4912 5123 5.873179 TCATTAACACGTTTGAATCCTCC 57.127 39.130 0.00 0.00 0.00 4.30
4913 5124 8.020819 TCATTTCATTAACACGTTTGAATCCTC 58.979 33.333 0.00 0.00 0.00 3.71
4914 5125 7.881142 TCATTTCATTAACACGTTTGAATCCT 58.119 30.769 0.00 0.00 0.00 3.24
4915 5126 8.514136 TTCATTTCATTAACACGTTTGAATCC 57.486 30.769 0.00 0.00 0.00 3.01
4916 5127 9.941991 CATTCATTTCATTAACACGTTTGAATC 57.058 29.630 0.00 0.00 31.02 2.52
4917 5128 9.689976 TCATTCATTTCATTAACACGTTTGAAT 57.310 25.926 0.00 0.00 32.99 2.57
4918 5129 9.179552 CTCATTCATTTCATTAACACGTTTGAA 57.820 29.630 0.00 0.00 0.00 2.69
4919 5130 8.563732 TCTCATTCATTTCATTAACACGTTTGA 58.436 29.630 0.00 0.00 0.00 2.69
4920 5131 8.629986 GTCTCATTCATTTCATTAACACGTTTG 58.370 33.333 0.00 0.00 0.00 2.93
4921 5132 8.349245 TGTCTCATTCATTTCATTAACACGTTT 58.651 29.630 0.00 0.00 0.00 3.60
4922 5133 7.870826 TGTCTCATTCATTTCATTAACACGTT 58.129 30.769 0.00 0.00 0.00 3.99
4923 5134 7.173218 ACTGTCTCATTCATTTCATTAACACGT 59.827 33.333 0.00 0.00 0.00 4.49
4924 5135 7.521529 ACTGTCTCATTCATTTCATTAACACG 58.478 34.615 0.00 0.00 0.00 4.49
4925 5136 9.683069 AAACTGTCTCATTCATTTCATTAACAC 57.317 29.630 0.00 0.00 0.00 3.32
4926 5137 9.681692 CAAACTGTCTCATTCATTTCATTAACA 57.318 29.630 0.00 0.00 0.00 2.41
4927 5138 8.642020 GCAAACTGTCTCATTCATTTCATTAAC 58.358 33.333 0.00 0.00 0.00 2.01
4928 5139 7.814107 GGCAAACTGTCTCATTCATTTCATTAA 59.186 33.333 0.00 0.00 0.00 1.40
4929 5140 7.177216 AGGCAAACTGTCTCATTCATTTCATTA 59.823 33.333 0.00 0.00 0.00 1.90
4930 5141 6.014840 AGGCAAACTGTCTCATTCATTTCATT 60.015 34.615 0.00 0.00 0.00 2.57
4931 5142 5.479375 AGGCAAACTGTCTCATTCATTTCAT 59.521 36.000 0.00 0.00 0.00 2.57
4932 5143 4.828939 AGGCAAACTGTCTCATTCATTTCA 59.171 37.500 0.00 0.00 0.00 2.69
4933 5144 5.382618 AGGCAAACTGTCTCATTCATTTC 57.617 39.130 0.00 0.00 0.00 2.17
4943 5154 2.301346 CCAAGTTGAGGCAAACTGTCT 58.699 47.619 3.87 0.00 40.28 3.41
4944 5155 2.781945 CCAAGTTGAGGCAAACTGTC 57.218 50.000 3.87 0.00 40.28 3.51
4953 5164 3.879912 CTTGCAAGCCAAGTTGAGG 57.120 52.632 14.65 0.00 44.74 3.86
4960 5171 5.726980 ATTTGAATAGACTTGCAAGCCAA 57.273 34.783 26.27 16.05 0.00 4.52
4961 5172 5.726980 AATTTGAATAGACTTGCAAGCCA 57.273 34.783 26.27 11.76 0.00 4.75
4962 5173 6.528072 GTGTAATTTGAATAGACTTGCAAGCC 59.472 38.462 26.27 16.15 0.00 4.35
4963 5174 7.083858 TGTGTAATTTGAATAGACTTGCAAGC 58.916 34.615 26.27 18.03 0.00 4.01
4964 5175 9.069078 CATGTGTAATTTGAATAGACTTGCAAG 57.931 33.333 24.84 24.84 0.00 4.01
4965 5176 8.791675 TCATGTGTAATTTGAATAGACTTGCAA 58.208 29.630 0.00 0.00 0.00 4.08
4966 5177 8.236586 GTCATGTGTAATTTGAATAGACTTGCA 58.763 33.333 0.00 0.00 0.00 4.08
4967 5178 8.454106 AGTCATGTGTAATTTGAATAGACTTGC 58.546 33.333 0.00 0.00 29.12 4.01
4979 5190 9.502145 CGTTTGCATATAAGTCATGTGTAATTT 57.498 29.630 0.00 0.00 32.09 1.82
4980 5191 8.673711 ACGTTTGCATATAAGTCATGTGTAATT 58.326 29.630 0.00 0.00 32.09 1.40
4981 5192 8.208718 ACGTTTGCATATAAGTCATGTGTAAT 57.791 30.769 0.00 0.00 32.09 1.89
4982 5193 7.603963 ACGTTTGCATATAAGTCATGTGTAA 57.396 32.000 0.00 0.00 30.47 2.41
4983 5194 8.705048 TTACGTTTGCATATAAGTCATGTGTA 57.295 30.769 0.00 0.00 0.00 2.90
4984 5195 7.603963 TTACGTTTGCATATAAGTCATGTGT 57.396 32.000 0.00 0.00 0.00 3.72
4985 5196 8.551205 AGATTACGTTTGCATATAAGTCATGTG 58.449 33.333 0.00 0.00 0.00 3.21
4986 5197 8.662781 AGATTACGTTTGCATATAAGTCATGT 57.337 30.769 0.00 0.00 0.00 3.21
4989 5200 9.203421 CCATAGATTACGTTTGCATATAAGTCA 57.797 33.333 0.00 0.00 0.00 3.41
4990 5201 8.656849 CCCATAGATTACGTTTGCATATAAGTC 58.343 37.037 0.00 0.00 0.00 3.01
4991 5202 8.154856 ACCCATAGATTACGTTTGCATATAAGT 58.845 33.333 0.00 0.00 0.00 2.24
4992 5203 8.547967 ACCCATAGATTACGTTTGCATATAAG 57.452 34.615 0.00 0.00 0.00 1.73
4993 5204 8.911918 AACCCATAGATTACGTTTGCATATAA 57.088 30.769 0.00 0.00 0.00 0.98
4995 5206 9.515226 AATAACCCATAGATTACGTTTGCATAT 57.485 29.630 0.00 0.00 0.00 1.78
4996 5207 8.911918 AATAACCCATAGATTACGTTTGCATA 57.088 30.769 0.00 0.00 0.00 3.14
4997 5208 7.817418 AATAACCCATAGATTACGTTTGCAT 57.183 32.000 0.00 0.00 0.00 3.96
4998 5209 7.633193 AAATAACCCATAGATTACGTTTGCA 57.367 32.000 0.00 0.00 0.00 4.08
4999 5210 9.442033 GTAAAATAACCCATAGATTACGTTTGC 57.558 33.333 0.00 0.00 0.00 3.68
5022 5233 9.388346 CGTTTTGAACATTTGCATAGTAAGTAA 57.612 29.630 0.00 0.00 0.00 2.24
5023 5234 8.775527 TCGTTTTGAACATTTGCATAGTAAGTA 58.224 29.630 0.00 0.00 0.00 2.24
5024 5235 7.644490 TCGTTTTGAACATTTGCATAGTAAGT 58.356 30.769 0.00 0.00 0.00 2.24
5025 5236 8.500837 TTCGTTTTGAACATTTGCATAGTAAG 57.499 30.769 0.00 0.00 0.00 2.34
5026 5237 8.858003 TTTCGTTTTGAACATTTGCATAGTAA 57.142 26.923 0.00 0.00 35.97 2.24
5027 5238 8.858003 TTTTCGTTTTGAACATTTGCATAGTA 57.142 26.923 0.00 0.00 35.97 1.82
5028 5239 7.763172 TTTTCGTTTTGAACATTTGCATAGT 57.237 28.000 0.00 0.00 35.97 2.12
5051 5262 8.870116 AGCCCACAGACTTCTATTTTTATTTTT 58.130 29.630 0.00 0.00 0.00 1.94
5052 5263 8.422577 AGCCCACAGACTTCTATTTTTATTTT 57.577 30.769 0.00 0.00 0.00 1.82
5053 5264 9.700831 ATAGCCCACAGACTTCTATTTTTATTT 57.299 29.630 0.00 0.00 0.00 1.40
5054 5265 9.700831 AATAGCCCACAGACTTCTATTTTTATT 57.299 29.630 0.00 0.00 28.71 1.40
5055 5266 9.700831 AAATAGCCCACAGACTTCTATTTTTAT 57.299 29.630 0.00 0.00 36.89 1.40
5056 5267 9.528489 AAAATAGCCCACAGACTTCTATTTTTA 57.472 29.630 10.65 0.00 42.49 1.52
5057 5268 8.422577 AAAATAGCCCACAGACTTCTATTTTT 57.577 30.769 10.65 0.00 42.49 1.94
5058 5269 8.422577 AAAAATAGCCCACAGACTTCTATTTT 57.577 30.769 10.65 10.65 44.81 1.82
5059 5270 8.957466 GTAAAAATAGCCCACAGACTTCTATTT 58.043 33.333 0.00 0.00 39.95 1.40
5060 5271 8.329502 AGTAAAAATAGCCCACAGACTTCTATT 58.670 33.333 0.00 0.00 32.99 1.73
5061 5272 7.862675 AGTAAAAATAGCCCACAGACTTCTAT 58.137 34.615 0.00 0.00 0.00 1.98
5062 5273 7.253905 AGTAAAAATAGCCCACAGACTTCTA 57.746 36.000 0.00 0.00 0.00 2.10
5063 5274 6.128138 AGTAAAAATAGCCCACAGACTTCT 57.872 37.500 0.00 0.00 0.00 2.85
5064 5275 6.035758 CGTAGTAAAAATAGCCCACAGACTTC 59.964 42.308 0.00 0.00 0.00 3.01
5065 5276 5.873164 CGTAGTAAAAATAGCCCACAGACTT 59.127 40.000 0.00 0.00 0.00 3.01
5066 5277 5.416947 CGTAGTAAAAATAGCCCACAGACT 58.583 41.667 0.00 0.00 0.00 3.24
5067 5278 4.033702 GCGTAGTAAAAATAGCCCACAGAC 59.966 45.833 0.00 0.00 0.00 3.51
5068 5279 4.186159 GCGTAGTAAAAATAGCCCACAGA 58.814 43.478 0.00 0.00 0.00 3.41
5069 5280 3.936453 TGCGTAGTAAAAATAGCCCACAG 59.064 43.478 0.00 0.00 0.00 3.66
5070 5281 3.940319 TGCGTAGTAAAAATAGCCCACA 58.060 40.909 0.00 0.00 0.00 4.17
5071 5282 4.950434 TTGCGTAGTAAAAATAGCCCAC 57.050 40.909 0.00 0.00 0.00 4.61
5072 5283 4.760715 TGTTTGCGTAGTAAAAATAGCCCA 59.239 37.500 0.00 0.00 44.87 5.36
5073 5284 5.299582 TGTTTGCGTAGTAAAAATAGCCC 57.700 39.130 0.00 0.00 44.87 5.19
5074 5285 7.626144 TTTTGTTTGCGTAGTAAAAATAGCC 57.374 32.000 0.00 0.00 44.87 3.93
5075 5286 8.748582 ACTTTTTGTTTGCGTAGTAAAAATAGC 58.251 29.630 0.00 0.00 44.87 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.