Multiple sequence alignment - TraesCS2B01G481900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G481900 chr2B 100.000 2590 0 0 971 3560 679909358 679911947 0.000000e+00 4783.0
1 TraesCS2B01G481900 chr2B 100.000 607 0 0 1 607 679908388 679908994 0.000000e+00 1122.0
2 TraesCS2B01G481900 chr2D 91.768 2624 139 33 974 3560 566998230 567000813 0.000000e+00 3578.0
3 TraesCS2B01G481900 chr2D 89.661 619 42 11 1 599 566997611 566998227 0.000000e+00 769.0
4 TraesCS2B01G481900 chr2A 94.839 2170 92 12 971 3128 706763381 706765542 0.000000e+00 3369.0
5 TraesCS2B01G481900 chr2A 90.438 617 42 11 3 605 706762715 706763328 0.000000e+00 797.0
6 TraesCS2B01G481900 chr2A 90.847 437 26 7 2822 3248 706766616 706767048 1.110000e-159 573.0
7 TraesCS2B01G481900 chr5B 86.813 182 23 1 2180 2361 322749212 322749032 6.030000e-48 202.0
8 TraesCS2B01G481900 chr1D 78.065 155 21 12 3277 3423 310871409 310871558 6.330000e-13 86.1
9 TraesCS2B01G481900 chr3D 97.059 34 1 0 3392 3425 51142313 51142346 1.380000e-04 58.4
10 TraesCS2B01G481900 chr3A 97.059 34 0 1 3392 3425 64062849 64062881 4.960000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G481900 chr2B 679908388 679911947 3559 False 2952.500000 4783 100.000000 1 3560 2 chr2B.!!$F1 3559
1 TraesCS2B01G481900 chr2D 566997611 567000813 3202 False 2173.500000 3578 90.714500 1 3560 2 chr2D.!!$F1 3559
2 TraesCS2B01G481900 chr2A 706762715 706767048 4333 False 1579.666667 3369 92.041333 3 3248 3 chr2A.!!$F1 3245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 508 0.847373 TGCTCCCTAGGTCGATCTCT 59.153 55.0 0.00 0.00 0.00 3.10 F
1509 1538 0.322277 ACCTCTTCTACGTGCTCGGA 60.322 55.0 13.32 2.45 41.85 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 1865 1.339055 CGGGTGAGAGATTCCAGCAAA 60.339 52.381 0.0 0.0 32.89 3.68 R
3427 3537 1.096416 AACTTCGAGAGACTAGGCCG 58.904 55.000 0.0 0.0 41.84 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.906282 TTTGGGACGGAGGGAGTACC 60.906 60.000 0.00 0.00 42.94 3.34
59 60 1.101331 GCTTCAGCTCATCCCCTTTG 58.899 55.000 0.00 0.00 38.21 2.77
87 89 8.410141 ACAATCATTTACCTCTTCGTTGAAAAA 58.590 29.630 0.00 0.00 0.00 1.94
116 118 8.786898 CATGATAATCTTTCAAATACGGTGGAT 58.213 33.333 0.00 0.00 0.00 3.41
131 137 4.022589 ACGGTGGATACTCGTATTGTATGG 60.023 45.833 0.00 0.00 43.10 2.74
133 139 3.918591 GTGGATACTCGTATTGTATGGCG 59.081 47.826 0.00 0.00 31.55 5.69
148 154 1.320507 TGGCGGCGTGTCTATATACA 58.679 50.000 9.37 0.00 0.00 2.29
192 198 7.811236 TGTATACACGCCTGATTAATTAGTAGC 59.189 37.037 0.08 3.14 0.00 3.58
193 199 5.018539 ACACGCCTGATTAATTAGTAGCA 57.981 39.130 6.50 0.00 0.00 3.49
206 212 0.963856 AGTAGCATGTCACCGTCGGA 60.964 55.000 20.51 0.00 0.00 4.55
210 216 1.139734 CATGTCACCGTCGGAGGAG 59.860 63.158 20.51 4.88 34.73 3.69
222 228 1.748122 GGAGGAGCGTACGTCCTGA 60.748 63.158 30.92 0.00 45.00 3.86
279 285 2.833794 GTGTACTGAAGCAAGACACCA 58.166 47.619 0.00 0.00 35.46 4.17
282 288 3.814842 TGTACTGAAGCAAGACACCAATG 59.185 43.478 0.00 0.00 0.00 2.82
283 289 2.936202 ACTGAAGCAAGACACCAATGT 58.064 42.857 0.00 0.00 43.71 2.71
284 290 3.290710 ACTGAAGCAAGACACCAATGTT 58.709 40.909 0.00 0.00 39.95 2.71
285 291 3.701040 ACTGAAGCAAGACACCAATGTTT 59.299 39.130 0.00 0.00 39.95 2.83
286 292 4.160252 ACTGAAGCAAGACACCAATGTTTT 59.840 37.500 0.00 0.00 39.95 2.43
288 294 5.830912 TGAAGCAAGACACCAATGTTTTAG 58.169 37.500 0.00 0.00 39.95 1.85
291 304 6.655078 AGCAAGACACCAATGTTTTAGAAT 57.345 33.333 0.00 0.00 39.95 2.40
329 344 7.068593 CCAGATGCCCTTTGTTAATCAGATTTA 59.931 37.037 0.00 0.00 0.00 1.40
373 394 1.748879 GGAGCCATACGCAGCCAAA 60.749 57.895 0.00 0.00 41.38 3.28
377 398 1.134946 AGCCATACGCAGCCAAATTTC 59.865 47.619 0.00 0.00 41.38 2.17
378 399 1.135141 GCCATACGCAGCCAAATTTCA 60.135 47.619 0.00 0.00 37.47 2.69
379 400 2.801063 CCATACGCAGCCAAATTTCAG 58.199 47.619 0.00 0.00 0.00 3.02
380 401 2.423185 CCATACGCAGCCAAATTTCAGA 59.577 45.455 0.00 0.00 0.00 3.27
381 402 3.488047 CCATACGCAGCCAAATTTCAGAG 60.488 47.826 0.00 0.00 0.00 3.35
382 403 1.896220 ACGCAGCCAAATTTCAGAGA 58.104 45.000 0.00 0.00 0.00 3.10
432 455 1.059098 TCAGCACTCCACAAGGACAT 58.941 50.000 0.00 0.00 39.61 3.06
451 474 8.854614 AGGACATAATGCTAAAATACTCCATC 57.145 34.615 0.00 0.00 0.00 3.51
485 508 0.847373 TGCTCCCTAGGTCGATCTCT 59.153 55.000 0.00 0.00 0.00 3.10
487 510 1.611491 GCTCCCTAGGTCGATCTCTTG 59.389 57.143 0.00 0.00 0.00 3.02
488 511 2.938838 CTCCCTAGGTCGATCTCTTGT 58.061 52.381 0.00 0.00 0.00 3.16
588 614 1.008538 GGTGCCAAGAACACAAGCG 60.009 57.895 0.00 0.00 39.87 4.68
1000 1026 0.390998 TGCGATCGAGGTTTCATGCA 60.391 50.000 21.57 0.00 0.00 3.96
1056 1082 4.883300 CTCGCCGTCGTCGCTACC 62.883 72.222 0.00 0.00 36.96 3.18
1083 1109 2.435059 GGCTTGGACTGGCTCGAC 60.435 66.667 0.00 0.00 0.00 4.20
1359 1385 4.295119 AACCAGCGTCGCCGAACT 62.295 61.111 14.86 0.00 35.63 3.01
1509 1538 0.322277 ACCTCTTCTACGTGCTCGGA 60.322 55.000 13.32 2.45 41.85 4.55
1587 1616 3.452786 CTCTCGCTTCGCCTCCCA 61.453 66.667 0.00 0.00 0.00 4.37
1773 1802 2.202851 ATCTCGCAGCTGGCTTCG 60.203 61.111 17.12 10.55 41.67 3.79
1810 1839 1.374125 CACCTCGTCGACATTGGCA 60.374 57.895 17.16 0.00 0.00 4.92
1815 1844 0.530288 TCGTCGACATTGGCATCTCA 59.470 50.000 17.16 0.00 0.00 3.27
1845 1874 1.896660 GTGGCCGACTTTGCTGGAA 60.897 57.895 0.00 0.00 0.00 3.53
1848 1877 0.678048 GGCCGACTTTGCTGGAATCT 60.678 55.000 0.00 0.00 0.00 2.40
1896 1925 3.461773 CCATCCGTCCGGCTGACT 61.462 66.667 10.90 0.00 42.13 3.41
1899 1928 2.283529 ATCCGTCCGGCTGACTGTT 61.284 57.895 7.47 0.00 42.13 3.16
2002 2031 2.437085 TAAGCTGGACCTCGAGATCA 57.563 50.000 15.71 8.00 0.00 2.92
2085 2114 4.020617 TGCCTCCAGTTCCGGCTG 62.021 66.667 0.00 0.00 44.09 4.85
2135 2164 0.107017 ATCATCCGCAGGGTCAAAGG 60.107 55.000 0.00 0.00 28.78 3.11
2163 2192 1.144057 GCACCTGGTGGTCCTATCG 59.856 63.158 27.02 0.00 46.60 2.92
2602 2636 1.677576 GTGATACCGGTGGACGTCATA 59.322 52.381 19.93 2.38 42.24 2.15
2623 2663 1.240641 TTTTGATGGCGACCGCACAT 61.241 50.000 16.47 15.47 44.11 3.21
2653 2696 1.751924 GTGGAGAGCGAGGTTGATACT 59.248 52.381 0.00 0.00 0.00 2.12
2720 2763 1.140052 TCTGCAACTTTGACCGGAGAA 59.860 47.619 9.46 0.00 0.00 2.87
2798 2849 2.210341 TACGTGCGGCGGTGTAATGA 62.210 55.000 9.78 0.00 46.52 2.57
2866 2919 0.820891 GTTGCGCATGGATGATCCCT 60.821 55.000 12.75 0.00 35.03 4.20
2873 2926 3.746751 CGCATGGATGATCCCTTCTTTCT 60.747 47.826 9.36 0.00 35.03 2.52
2881 2934 3.074390 TGATCCCTTCTTTCTTTGCTCCA 59.926 43.478 0.00 0.00 0.00 3.86
2903 2956 5.757320 CCATTTCTGATTTCTCTATGCGTCT 59.243 40.000 0.00 0.00 0.00 4.18
3116 3175 1.182667 GCCCTGGACCATTGTAAACC 58.817 55.000 0.00 0.00 0.00 3.27
3150 3244 4.141959 TGTCAACTATGCCATCGAATCTGA 60.142 41.667 0.00 0.00 0.00 3.27
3177 3271 4.467438 GTGATCCCATCCAGGTTCATTTTT 59.533 41.667 0.00 0.00 37.81 1.94
3238 3332 4.789012 ATGAAAAACATACAGGTGCAGG 57.211 40.909 0.00 0.00 37.46 4.85
3241 3335 0.611896 AAACATACAGGTGCAGGGCC 60.612 55.000 0.00 0.00 0.00 5.80
3262 3356 3.623060 CCGCTTCAGCTTGCTTATTAGAA 59.377 43.478 0.00 0.00 39.32 2.10
3284 3378 0.250553 TCTTCAACCGGCGAACCAAT 60.251 50.000 9.30 0.00 34.57 3.16
3285 3379 1.002201 TCTTCAACCGGCGAACCAATA 59.998 47.619 9.30 0.00 34.57 1.90
3303 3397 7.587037 ACCAATATGTGATTGAATGGTTAGG 57.413 36.000 0.00 0.00 36.32 2.69
3310 3404 6.303054 TGTGATTGAATGGTTAGGAAGACAA 58.697 36.000 0.00 0.00 0.00 3.18
3317 3411 9.699410 TTGAATGGTTAGGAAGACAATGATATT 57.301 29.630 0.00 0.00 0.00 1.28
3319 3413 9.566432 GAATGGTTAGGAAGACAATGATATTCT 57.434 33.333 0.00 0.00 0.00 2.40
3330 3424 6.155910 AGACAATGATATTCTCTGTCCACAGT 59.844 38.462 6.61 0.00 44.12 3.55
3340 3434 2.158957 TCTGTCCACAGTGTTCAAGTCC 60.159 50.000 6.61 0.00 44.12 3.85
3390 3500 6.476706 CAGCTATTCTGACGATATGTGTTCAA 59.523 38.462 0.00 0.00 45.72 2.69
3405 3515 3.564225 GTGTTCAATGGAAGGAGACGTTT 59.436 43.478 0.00 0.00 32.62 3.60
3406 3516 4.036380 GTGTTCAATGGAAGGAGACGTTTT 59.964 41.667 0.00 0.00 32.62 2.43
3422 3532 4.465966 CGTTTTCGTCGACTATGAAGAC 57.534 45.455 14.70 13.26 35.73 3.01
3427 3537 1.546834 GTCGACTATGAAGACGTGCC 58.453 55.000 8.70 0.00 40.91 5.01
3432 3542 2.298158 CTATGAAGACGTGCCGGCCT 62.298 60.000 26.77 11.08 34.11 5.19
3438 3548 3.412879 GACGTGCCGGCCTAGTCTC 62.413 68.421 27.77 11.72 0.00 3.36
3441 3551 2.829003 TGCCGGCCTAGTCTCTCG 60.829 66.667 26.77 0.00 0.00 4.04
3463 3582 3.377346 AGTTGCTCATAGAGGCATACG 57.623 47.619 0.00 0.00 38.30 3.06
3467 3586 2.223805 TGCTCATAGAGGCATACGTGTG 60.224 50.000 8.09 8.09 33.23 3.82
3475 3594 3.699538 AGAGGCATACGTGTGTTCATAGA 59.300 43.478 14.10 0.00 0.00 1.98
3481 3600 5.174035 GCATACGTGTGTTCATAGAGATGAC 59.826 44.000 14.10 0.00 41.92 3.06
3487 3606 6.416161 CGTGTGTTCATAGAGATGACTGTATG 59.584 42.308 0.00 0.00 45.66 2.39
3498 3617 6.207614 AGAGATGACTGTATGTGCGTATGTAT 59.792 38.462 0.00 0.00 0.00 2.29
3501 3620 8.023706 AGATGACTGTATGTGCGTATGTATAAG 58.976 37.037 0.00 0.00 0.00 1.73
3503 3622 5.227908 ACTGTATGTGCGTATGTATAAGCC 58.772 41.667 7.22 1.11 37.02 4.35
3504 3623 4.562082 TGTATGTGCGTATGTATAAGCCC 58.438 43.478 7.22 0.00 37.02 5.19
3511 3630 3.875134 GCGTATGTATAAGCCCTGTGTTT 59.125 43.478 0.00 0.00 32.68 2.83
3512 3631 4.260620 GCGTATGTATAAGCCCTGTGTTTG 60.261 45.833 0.00 0.00 32.68 2.93
3516 3635 5.230323 TGTATAAGCCCTGTGTTTGTACA 57.770 39.130 0.00 0.00 38.68 2.90
3518 3637 2.729028 AAGCCCTGTGTTTGTACAGT 57.271 45.000 0.00 0.00 45.12 3.55
3519 3638 3.849563 AAGCCCTGTGTTTGTACAGTA 57.150 42.857 0.00 0.00 45.12 2.74
3522 3641 5.492855 AGCCCTGTGTTTGTACAGTATAA 57.507 39.130 0.00 0.00 45.12 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.861575 GAAGCGGAATCCTTCTTAGCG 59.138 52.381 0.00 0.00 36.60 4.26
25 26 2.869192 CTGAAGCGGAATCCTTCTTAGC 59.131 50.000 0.00 0.00 39.47 3.09
59 60 7.129109 TCAACGAAGAGGTAAATGATTGTTC 57.871 36.000 0.00 0.00 0.00 3.18
87 89 6.772716 ACCGTATTTGAAAGATTATCATGCCT 59.227 34.615 0.00 0.00 0.00 4.75
116 118 1.335233 CGCCGCCATACAATACGAGTA 60.335 52.381 0.00 0.00 0.00 2.59
131 137 4.087510 TGTATGTATATAGACACGCCGC 57.912 45.455 1.52 0.00 30.52 6.53
133 139 6.866770 ACACAATGTATGTATATAGACACGCC 59.133 38.462 1.52 0.00 41.46 5.68
148 154 7.381408 GTGTATACATCGCTACACACAATGTAT 59.619 37.037 9.18 10.21 44.51 2.29
162 168 2.065993 ATCAGGCGTGTATACATCGC 57.934 50.000 28.88 28.88 41.80 4.58
192 198 1.139734 CTCCTCCGACGGTGACATG 59.860 63.158 17.27 0.83 0.00 3.21
193 199 2.711922 GCTCCTCCGACGGTGACAT 61.712 63.158 17.27 0.00 0.00 3.06
206 212 1.313812 CCTTCAGGACGTACGCTCCT 61.314 60.000 24.59 24.59 38.84 3.69
285 291 9.520515 GGCATCTGGAATATCCTTTTATTCTAA 57.479 33.333 0.00 0.00 38.23 2.10
286 292 8.109634 GGGCATCTGGAATATCCTTTTATTCTA 58.890 37.037 0.00 0.00 38.23 2.10
288 294 6.950619 AGGGCATCTGGAATATCCTTTTATTC 59.049 38.462 0.00 0.00 37.46 1.75
291 304 5.930209 AGGGCATCTGGAATATCCTTTTA 57.070 39.130 0.00 0.00 37.46 1.52
306 319 9.822185 AAATAAATCTGATTAACAAAGGGCATC 57.178 29.630 2.85 0.00 0.00 3.91
329 344 7.330700 CCGTGCAAAACATTGGTATTCTAAAAT 59.669 33.333 0.00 0.00 0.00 1.82
432 455 8.786898 GCATCAAGATGGAGTATTTTAGCATTA 58.213 33.333 11.66 0.00 39.16 1.90
451 474 0.747283 GAGCAGGACCAGGCATCAAG 60.747 60.000 10.37 0.00 0.00 3.02
485 508 0.178975 AGGGTTTGGCGGATGAACAA 60.179 50.000 0.00 0.00 0.00 2.83
487 510 1.828979 TTAGGGTTTGGCGGATGAAC 58.171 50.000 0.00 0.00 0.00 3.18
488 511 2.164338 GTTTAGGGTTTGGCGGATGAA 58.836 47.619 0.00 0.00 0.00 2.57
1000 1026 3.202818 TCATGGTAGTTCATGGCCTTCAT 59.797 43.478 3.32 0.00 43.33 2.57
1053 1079 1.666553 CAAGCCGTCGTTGCTGGTA 60.667 57.895 0.00 0.00 39.48 3.25
1056 1082 2.664851 TCCAAGCCGTCGTTGCTG 60.665 61.111 0.00 0.00 39.48 4.41
1359 1385 2.844362 CCCGGCCTATCCTGCTCA 60.844 66.667 0.00 0.00 0.00 4.26
1509 1538 2.574399 GAGAAGGCCGCGAGTTCT 59.426 61.111 8.23 12.59 33.14 3.01
1791 1820 1.374252 GCCAATGTCGACGAGGTGT 60.374 57.895 18.21 0.00 0.00 4.16
1836 1865 1.339055 CGGGTGAGAGATTCCAGCAAA 60.339 52.381 0.00 0.00 32.89 3.68
1845 1874 2.507944 GCCATGCGGGTGAGAGAT 59.492 61.111 0.00 0.00 39.65 2.75
2196 2225 4.421479 CTCGCCGTGAACTCGCCT 62.421 66.667 0.00 0.00 0.00 5.52
2568 2597 2.913054 TATCACGGCTGAGCTGCTGC 62.913 60.000 14.22 7.62 42.69 5.25
2569 2598 1.142531 TATCACGGCTGAGCTGCTG 59.857 57.895 14.22 10.96 44.34 4.41
2583 2617 1.951602 CTATGACGTCCACCGGTATCA 59.048 52.381 14.12 6.96 42.24 2.15
2591 2625 3.181510 GCCATCAAAACTATGACGTCCAC 60.182 47.826 14.12 0.00 30.82 4.02
2602 2636 1.599518 TGCGGTCGCCATCAAAACT 60.600 52.632 12.94 0.00 41.09 2.66
2623 2663 2.367202 GCTCTCCACCAATCCCGGA 61.367 63.158 0.73 0.00 0.00 5.14
2866 2919 6.906157 ATCAGAAATGGAGCAAAGAAAGAA 57.094 33.333 0.00 0.00 0.00 2.52
2873 2926 7.415989 GCATAGAGAAATCAGAAATGGAGCAAA 60.416 37.037 0.00 0.00 0.00 3.68
2881 2934 8.147058 ACATAGACGCATAGAGAAATCAGAAAT 58.853 33.333 0.00 0.00 0.00 2.17
3069 3128 1.869767 CCAAGAATGATACGCTCAGCC 59.130 52.381 0.00 0.00 37.28 4.85
3116 3175 6.566141 TGGCATAGTTGACAAATCAATCATG 58.434 36.000 0.00 8.39 46.43 3.07
3224 3318 2.677228 GGCCCTGCACCTGTATGT 59.323 61.111 0.00 0.00 0.00 2.29
3253 3347 6.866770 TCGCCGGTTGAAGATATTCTAATAAG 59.133 38.462 1.90 0.00 0.00 1.73
3262 3356 1.208535 TGGTTCGCCGGTTGAAGATAT 59.791 47.619 10.95 0.00 41.18 1.63
3284 3378 7.629157 TGTCTTCCTAACCATTCAATCACATA 58.371 34.615 0.00 0.00 0.00 2.29
3285 3379 6.484288 TGTCTTCCTAACCATTCAATCACAT 58.516 36.000 0.00 0.00 0.00 3.21
3303 3397 7.044181 TGTGGACAGAGAATATCATTGTCTTC 58.956 38.462 11.44 0.13 38.49 2.87
3310 3404 5.946942 ACACTGTGGACAGAGAATATCAT 57.053 39.130 13.74 0.00 46.59 2.45
3317 3411 2.766263 ACTTGAACACTGTGGACAGAGA 59.234 45.455 13.74 0.00 46.59 3.10
3319 3413 2.158957 GGACTTGAACACTGTGGACAGA 60.159 50.000 13.74 3.04 46.59 3.41
3374 3484 4.875536 CCTTCCATTGAACACATATCGTCA 59.124 41.667 0.00 0.00 0.00 4.35
3376 3486 5.097742 TCCTTCCATTGAACACATATCGT 57.902 39.130 0.00 0.00 0.00 3.73
3384 3494 3.485463 AACGTCTCCTTCCATTGAACA 57.515 42.857 0.00 0.00 0.00 3.18
3390 3500 2.685100 GACGAAAACGTCTCCTTCCAT 58.315 47.619 14.10 0.00 36.12 3.41
3427 3537 1.096416 AACTTCGAGAGACTAGGCCG 58.904 55.000 0.00 0.00 41.84 6.13
3432 3542 5.429130 TCTATGAGCAACTTCGAGAGACTA 58.571 41.667 2.28 0.00 41.84 2.59
3438 3548 2.159184 TGCCTCTATGAGCAACTTCGAG 60.159 50.000 0.00 0.00 35.69 4.04
3441 3551 3.738282 CGTATGCCTCTATGAGCAACTTC 59.262 47.826 0.00 0.00 43.36 3.01
3463 3582 7.221645 CACATACAGTCATCTCTATGAACACAC 59.778 40.741 0.00 0.00 43.69 3.82
3467 3586 5.400782 CGCACATACAGTCATCTCTATGAAC 59.599 44.000 0.00 0.00 43.69 3.18
3475 3594 4.655762 ACATACGCACATACAGTCATCT 57.344 40.909 0.00 0.00 0.00 2.90
3481 3600 4.625742 GGGCTTATACATACGCACATACAG 59.374 45.833 0.87 0.00 31.89 2.74
3487 3606 2.800544 CACAGGGCTTATACATACGCAC 59.199 50.000 0.87 0.00 31.72 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.