Multiple sequence alignment - TraesCS2B01G481600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G481600 chr2B 100.000 3425 0 0 1 3425 679887655 679884231 0.000000e+00 6325.0
1 TraesCS2B01G481600 chr2B 92.400 750 33 6 1714 2441 679816097 679815350 0.000000e+00 1048.0
2 TraesCS2B01G481600 chr2B 86.981 699 67 18 454 1139 679819527 679818840 0.000000e+00 765.0
3 TraesCS2B01G481600 chr2A 91.168 2842 195 35 1 2807 706743793 706740973 0.000000e+00 3807.0
4 TraesCS2B01G481600 chr2A 90.897 758 44 10 1714 2446 706644623 706643866 0.000000e+00 994.0
5 TraesCS2B01G481600 chr2A 87.572 692 65 16 458 1139 706645674 706644994 0.000000e+00 782.0
6 TraesCS2B01G481600 chr2A 90.374 374 34 2 3052 3425 706740978 706740607 1.100000e-134 490.0
7 TraesCS2B01G481600 chr2D 94.207 1381 58 14 1267 2633 566981039 566979667 0.000000e+00 2087.0
8 TraesCS2B01G481600 chr2D 91.637 849 45 15 428 1268 566982030 566981200 0.000000e+00 1151.0
9 TraesCS2B01G481600 chr2D 92.744 758 30 6 1714 2446 566836053 566835296 0.000000e+00 1072.0
10 TraesCS2B01G481600 chr2D 87.536 698 65 16 454 1139 566838281 566837594 0.000000e+00 787.0
11 TraesCS2B01G481600 chr2D 87.097 434 29 8 1 429 566982469 566982058 1.860000e-127 466.0
12 TraesCS2B01G481600 chr2D 88.583 254 25 1 2803 3052 507867720 507867467 4.290000e-79 305.0
13 TraesCS2B01G481600 chr3D 90.800 250 20 1 2801 3047 535589320 535589569 7.080000e-87 331.0
14 TraesCS2B01G481600 chr3D 83.200 250 29 2 2802 3047 301777021 301776781 2.070000e-52 217.0
15 TraesCS2B01G481600 chr3D 96.875 32 1 0 3016 3047 577238609 577238578 2.000000e-03 54.7
16 TraesCS2B01G481600 chr7B 89.212 241 23 2 2812 3049 715281120 715281360 7.190000e-77 298.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G481600 chr2B 679884231 679887655 3424 True 6325.000000 6325 100.000000 1 3425 1 chr2B.!!$R1 3424
1 TraesCS2B01G481600 chr2B 679815350 679819527 4177 True 906.500000 1048 89.690500 454 2441 2 chr2B.!!$R2 1987
2 TraesCS2B01G481600 chr2A 706740607 706743793 3186 True 2148.500000 3807 90.771000 1 3425 2 chr2A.!!$R2 3424
3 TraesCS2B01G481600 chr2A 706643866 706645674 1808 True 888.000000 994 89.234500 458 2446 2 chr2A.!!$R1 1988
4 TraesCS2B01G481600 chr2D 566979667 566982469 2802 True 1234.666667 2087 90.980333 1 2633 3 chr2D.!!$R3 2632
5 TraesCS2B01G481600 chr2D 566835296 566838281 2985 True 929.500000 1072 90.140000 454 2446 2 chr2D.!!$R2 1992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 512 0.324943 AGTGCGCCAACAACTCCTAT 59.675 50.000 4.18 0.0 0.0 2.57 F
868 928 1.062886 AGCTAGCCCACTACTCCATGA 60.063 52.381 12.13 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 4759 1.238439 GCATACACAGTTGCACACCT 58.762 50.0 0.0 0.0 38.72 4.00 R
2765 5824 0.177141 TACTGCCATAAGCCACGTCC 59.823 55.0 0.0 0.0 42.71 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.967326 CCAGTTGGAGATGGTAGTATGGA 59.033 47.826 0.00 0.00 37.39 3.41
81 82 9.317936 GACTATATTCAATTGATGTGAGTGACA 57.682 33.333 9.40 0.00 39.53 3.58
88 89 6.942005 TCAATTGATGTGAGTGACAACCTAAT 59.058 34.615 3.38 0.00 38.36 1.73
202 204 8.137437 ACACATACTTTGCAATCAATATAAGCC 58.863 33.333 0.00 0.00 31.33 4.35
236 238 2.225467 GATGCAGAGGGCCAGATTTAC 58.775 52.381 6.18 0.00 43.89 2.01
247 249 4.081642 GGGCCAGATTTACCTTTCTTTTCC 60.082 45.833 4.39 0.00 0.00 3.13
435 471 1.176527 CCACGGCCAACATCAGAATT 58.823 50.000 2.24 0.00 0.00 2.17
446 482 4.607293 ACATCAGAATTAGCATCGCCTA 57.393 40.909 0.00 0.00 0.00 3.93
472 508 1.658409 GCAAGTGCGCCAACAACTC 60.658 57.895 4.18 0.00 0.00 3.01
476 512 0.324943 AGTGCGCCAACAACTCCTAT 59.675 50.000 4.18 0.00 0.00 2.57
495 532 5.130477 TCCTATCAAAGAAGTCCATACCACC 59.870 44.000 0.00 0.00 0.00 4.61
513 550 1.376037 CACCTCAAGGCGTTCCCTC 60.376 63.158 0.00 0.00 45.62 4.30
573 610 5.972935 TCTGCAAGTTATTAGTGGATCGAA 58.027 37.500 0.00 0.00 33.76 3.71
660 708 8.165239 TGGTGCATATATTAGTTTCCACAATC 57.835 34.615 0.00 0.00 0.00 2.67
679 727 4.859304 ATCGATATTTAGGCACGTGGTA 57.141 40.909 18.88 0.00 0.00 3.25
683 731 4.208460 CGATATTTAGGCACGTGGTAACTG 59.792 45.833 18.88 0.00 37.61 3.16
684 732 2.172851 TTTAGGCACGTGGTAACTGG 57.827 50.000 18.88 0.00 37.61 4.00
733 783 3.935203 TGAGAGAAAAATCAGCCGATCAC 59.065 43.478 0.00 0.00 0.00 3.06
757 807 6.127814 ACACGTAAGCTAGCAATGTTAGTAGA 60.128 38.462 18.83 0.00 45.62 2.59
793 850 4.174009 CCTAGTCAAACTACACGGTGATG 58.826 47.826 16.29 9.15 0.00 3.07
794 851 4.082408 CCTAGTCAAACTACACGGTGATGA 60.082 45.833 16.29 7.96 0.00 2.92
795 852 4.537135 AGTCAAACTACACGGTGATGAT 57.463 40.909 16.29 0.00 0.00 2.45
808 865 4.523173 ACGGTGATGATATTAGTGACCGAT 59.477 41.667 14.12 0.00 46.10 4.18
865 925 1.330655 GCAGCTAGCCCACTACTCCA 61.331 60.000 12.13 0.00 37.23 3.86
866 926 1.418334 CAGCTAGCCCACTACTCCAT 58.582 55.000 12.13 0.00 0.00 3.41
868 928 1.062886 AGCTAGCCCACTACTCCATGA 60.063 52.381 12.13 0.00 0.00 3.07
954 1015 1.770294 ACACTAGCTAGCTGACCCTC 58.230 55.000 27.68 0.00 0.00 4.30
990 1057 2.999355 GTCTTGCAAGTGAAGCTAGGAG 59.001 50.000 25.19 0.00 35.90 3.69
992 1059 2.751166 TGCAAGTGAAGCTAGGAGAC 57.249 50.000 0.00 0.00 0.00 3.36
994 1061 2.028658 TGCAAGTGAAGCTAGGAGACAG 60.029 50.000 0.00 0.00 0.00 3.51
1166 1233 6.713762 TTGGAAAAGAAGAAGATTTGCTCA 57.286 33.333 0.00 0.00 0.00 4.26
1229 1297 9.757227 TTGTCAAAATTTTCTTATTCGACCAAT 57.243 25.926 0.00 0.00 0.00 3.16
1776 4796 2.710220 TGCATGCAGTGATTGTGAAC 57.290 45.000 18.46 0.00 0.00 3.18
2025 5045 1.455217 GATCATGGGGCAGCTGCTT 60.455 57.895 35.82 17.01 41.70 3.91
2136 5156 0.107459 GGCTCATCCACTTCCAGGTC 60.107 60.000 0.00 0.00 34.01 3.85
2495 5541 4.062677 TGGTAAACAGAGTGTGGTGTAC 57.937 45.455 0.00 0.00 0.00 2.90
2496 5542 3.181463 TGGTAAACAGAGTGTGGTGTACC 60.181 47.826 4.55 4.55 33.45 3.34
2658 5717 7.437862 GGTTTGTTCATCAGTTTTGCTAATTCA 59.562 33.333 0.00 0.00 0.00 2.57
2661 5720 7.140705 TGTTCATCAGTTTTGCTAATTCACAG 58.859 34.615 0.00 0.00 0.00 3.66
2663 5722 6.671190 TCATCAGTTTTGCTAATTCACAGTG 58.329 36.000 0.00 0.00 0.00 3.66
2673 5732 3.703001 AATTCACAGTGGACGGAGAAT 57.297 42.857 0.00 0.00 34.29 2.40
2676 5735 4.610605 TTCACAGTGGACGGAGAATTAA 57.389 40.909 0.00 0.00 0.00 1.40
2678 5737 3.000727 CACAGTGGACGGAGAATTAACC 58.999 50.000 0.00 0.00 0.00 2.85
2698 5757 1.609208 GAGTGTCAGCCAACCATTGT 58.391 50.000 0.00 0.00 0.00 2.71
2719 5778 7.447374 TTGTCTGGTGTTATTTAGATTGGTG 57.553 36.000 0.00 0.00 0.00 4.17
2729 5788 8.100791 TGTTATTTAGATTGGTGCTGAAGTACT 58.899 33.333 0.00 0.00 0.00 2.73
2734 5793 6.319141 AGATTGGTGCTGAAGTACTTTTTC 57.681 37.500 10.02 0.00 0.00 2.29
2744 5803 7.719633 TGCTGAAGTACTTTTTCTTAAGGTGAT 59.280 33.333 10.02 0.00 0.00 3.06
2764 5823 6.312180 GGTGATTACTTATTTTTCGGTCGTCT 59.688 38.462 0.00 0.00 0.00 4.18
2765 5824 7.171434 GTGATTACTTATTTTTCGGTCGTCTG 58.829 38.462 0.00 0.00 0.00 3.51
2766 5825 6.311935 TGATTACTTATTTTTCGGTCGTCTGG 59.688 38.462 0.00 0.00 0.00 3.86
2780 5839 1.090052 GTCTGGACGTGGCTTATGGC 61.090 60.000 0.00 0.00 40.90 4.40
2792 5851 3.096852 GGCTTATGGCAGTAGGGTTTTT 58.903 45.455 0.00 0.00 44.01 1.94
2833 5892 8.773645 TGCAAGATCAATAGTTATTCCAATACG 58.226 33.333 0.00 0.00 0.00 3.06
2834 5893 8.230486 GCAAGATCAATAGTTATTCCAATACGG 58.770 37.037 0.00 0.00 0.00 4.02
2835 5894 9.273016 CAAGATCAATAGTTATTCCAATACGGT 57.727 33.333 0.00 0.00 35.57 4.83
2838 5897 8.773404 ATCAATAGTTATTCCAATACGGTAGC 57.227 34.615 0.00 0.00 35.57 3.58
2839 5898 6.864685 TCAATAGTTATTCCAATACGGTAGCG 59.135 38.462 13.69 13.69 35.57 4.26
2840 5899 4.660789 AGTTATTCCAATACGGTAGCGT 57.339 40.909 24.61 24.61 35.57 5.07
2841 5900 5.014808 AGTTATTCCAATACGGTAGCGTT 57.985 39.130 26.37 10.58 35.57 4.84
2842 5901 6.147864 AGTTATTCCAATACGGTAGCGTTA 57.852 37.500 26.37 11.75 35.57 3.18
2843 5902 5.979517 AGTTATTCCAATACGGTAGCGTTAC 59.020 40.000 26.37 0.03 35.57 2.50
2844 5903 3.865011 TTCCAATACGGTAGCGTTACA 57.135 42.857 26.37 8.20 35.57 2.41
2845 5904 3.865011 TCCAATACGGTAGCGTTACAA 57.135 42.857 26.37 7.79 35.57 2.41
2846 5905 4.389890 TCCAATACGGTAGCGTTACAAT 57.610 40.909 26.37 10.02 35.57 2.71
2847 5906 4.362279 TCCAATACGGTAGCGTTACAATC 58.638 43.478 26.37 0.00 35.57 2.67
2848 5907 3.492011 CCAATACGGTAGCGTTACAATCC 59.508 47.826 26.37 0.00 0.00 3.01
2849 5908 4.365723 CAATACGGTAGCGTTACAATCCT 58.634 43.478 26.37 0.00 0.00 3.24
2850 5909 4.660789 ATACGGTAGCGTTACAATCCTT 57.339 40.909 26.37 0.00 0.00 3.36
2851 5910 3.323751 ACGGTAGCGTTACAATCCTTT 57.676 42.857 15.34 0.00 0.00 3.11
2852 5911 2.997986 ACGGTAGCGTTACAATCCTTTG 59.002 45.455 15.34 0.00 38.86 2.77
2853 5912 2.350498 CGGTAGCGTTACAATCCTTTGG 59.650 50.000 11.70 0.00 37.15 3.28
2854 5913 2.096980 GGTAGCGTTACAATCCTTTGGC 59.903 50.000 11.70 0.00 37.15 4.52
2855 5914 1.904287 AGCGTTACAATCCTTTGGCA 58.096 45.000 0.00 0.00 37.15 4.92
2856 5915 2.235016 AGCGTTACAATCCTTTGGCAA 58.765 42.857 0.00 0.00 37.15 4.52
2857 5916 2.228822 AGCGTTACAATCCTTTGGCAAG 59.771 45.455 0.00 0.00 37.15 4.01
2858 5917 2.227865 GCGTTACAATCCTTTGGCAAGA 59.772 45.455 0.00 0.00 37.15 3.02
2859 5918 3.305064 GCGTTACAATCCTTTGGCAAGAA 60.305 43.478 0.00 0.00 37.15 2.52
2860 5919 4.794655 GCGTTACAATCCTTTGGCAAGAAA 60.795 41.667 0.00 0.00 37.15 2.52
2861 5920 5.469479 CGTTACAATCCTTTGGCAAGAAAT 58.531 37.500 0.00 0.00 37.15 2.17
2862 5921 5.572896 CGTTACAATCCTTTGGCAAGAAATC 59.427 40.000 0.00 0.00 37.15 2.17
2863 5922 4.541973 ACAATCCTTTGGCAAGAAATCC 57.458 40.909 0.00 0.00 37.15 3.01
2864 5923 4.162651 ACAATCCTTTGGCAAGAAATCCT 58.837 39.130 0.00 0.00 37.15 3.24
2865 5924 4.221482 ACAATCCTTTGGCAAGAAATCCTC 59.779 41.667 0.00 0.00 37.15 3.71
2866 5925 3.524095 TCCTTTGGCAAGAAATCCTCA 57.476 42.857 0.00 0.00 30.57 3.86
2867 5926 3.843422 TCCTTTGGCAAGAAATCCTCAA 58.157 40.909 0.00 0.00 30.57 3.02
2868 5927 4.419282 TCCTTTGGCAAGAAATCCTCAAT 58.581 39.130 0.00 0.00 30.57 2.57
2869 5928 5.579047 TCCTTTGGCAAGAAATCCTCAATA 58.421 37.500 0.00 0.00 30.57 1.90
2870 5929 5.418840 TCCTTTGGCAAGAAATCCTCAATAC 59.581 40.000 0.00 0.00 30.57 1.89
2871 5930 5.185635 CCTTTGGCAAGAAATCCTCAATACA 59.814 40.000 0.00 0.00 30.57 2.29
2872 5931 6.127253 CCTTTGGCAAGAAATCCTCAATACAT 60.127 38.462 0.00 0.00 30.57 2.29
2873 5932 5.840243 TGGCAAGAAATCCTCAATACATG 57.160 39.130 0.00 0.00 0.00 3.21
2874 5933 5.508567 TGGCAAGAAATCCTCAATACATGA 58.491 37.500 0.00 0.00 36.38 3.07
2886 5945 4.223953 TCAATACATGAGGGTCCTCTACC 58.776 47.826 16.93 0.00 43.12 3.18
2887 5946 5.233277 TCAATACATGAGGGTCCTCTACCG 61.233 50.000 16.93 6.36 40.45 4.02
2888 5947 7.402497 TCAATACATGAGGGTCCTCTACCGA 62.402 48.000 16.93 0.00 40.45 4.69
2893 5952 3.208335 GGTCCTCTACCGAGCCAC 58.792 66.667 0.00 0.00 38.88 5.01
2894 5953 1.681327 GGTCCTCTACCGAGCCACA 60.681 63.158 0.00 0.00 38.88 4.17
2895 5954 1.511768 GTCCTCTACCGAGCCACAC 59.488 63.158 0.00 0.00 35.90 3.82
2896 5955 1.076014 TCCTCTACCGAGCCACACA 59.924 57.895 0.00 0.00 35.90 3.72
2897 5956 0.541063 TCCTCTACCGAGCCACACAA 60.541 55.000 0.00 0.00 35.90 3.33
2898 5957 0.389948 CCTCTACCGAGCCACACAAC 60.390 60.000 0.00 0.00 35.90 3.32
2899 5958 0.389948 CTCTACCGAGCCACACAACC 60.390 60.000 0.00 0.00 0.00 3.77
2900 5959 1.736645 CTACCGAGCCACACAACCG 60.737 63.158 0.00 0.00 0.00 4.44
2901 5960 2.430382 CTACCGAGCCACACAACCGT 62.430 60.000 0.00 0.00 0.00 4.83
2902 5961 1.177895 TACCGAGCCACACAACCGTA 61.178 55.000 0.00 0.00 0.00 4.02
2903 5962 1.736645 CCGAGCCACACAACCGTAG 60.737 63.158 0.00 0.00 0.00 3.51
2904 5963 2.380410 CGAGCCACACAACCGTAGC 61.380 63.158 0.00 0.00 0.00 3.58
2905 5964 1.004918 GAGCCACACAACCGTAGCT 60.005 57.895 0.00 0.00 0.00 3.32
2906 5965 0.602905 GAGCCACACAACCGTAGCTT 60.603 55.000 0.00 0.00 0.00 3.74
2907 5966 0.884704 AGCCACACAACCGTAGCTTG 60.885 55.000 0.00 0.00 0.00 4.01
2908 5967 1.574428 CCACACAACCGTAGCTTGC 59.426 57.895 0.00 0.00 0.00 4.01
2909 5968 0.884704 CCACACAACCGTAGCTTGCT 60.885 55.000 0.00 0.00 0.00 3.91
2910 5969 0.512952 CACACAACCGTAGCTTGCTC 59.487 55.000 0.00 0.00 0.00 4.26
2911 5970 0.105964 ACACAACCGTAGCTTGCTCA 59.894 50.000 0.00 0.00 0.00 4.26
2912 5971 1.225855 CACAACCGTAGCTTGCTCAA 58.774 50.000 0.00 0.00 0.00 3.02
2913 5972 1.601903 CACAACCGTAGCTTGCTCAAA 59.398 47.619 0.00 0.00 0.00 2.69
2914 5973 1.873591 ACAACCGTAGCTTGCTCAAAG 59.126 47.619 0.00 0.00 39.07 2.77
2925 5984 3.786635 CTTGCTCAAAGCGACTATACCT 58.213 45.455 0.00 0.00 46.26 3.08
2926 5985 3.887621 TGCTCAAAGCGACTATACCTT 57.112 42.857 0.00 0.00 46.26 3.50
2927 5986 3.521560 TGCTCAAAGCGACTATACCTTG 58.478 45.455 0.00 0.00 46.26 3.61
2928 5987 2.285488 GCTCAAAGCGACTATACCTTGC 59.715 50.000 0.00 0.00 0.00 4.01
2929 5988 2.866762 CTCAAAGCGACTATACCTTGCC 59.133 50.000 0.00 0.00 0.00 4.52
2930 5989 2.235155 TCAAAGCGACTATACCTTGCCA 59.765 45.455 0.00 0.00 0.00 4.92
2931 5990 2.604046 AAGCGACTATACCTTGCCAG 57.396 50.000 0.00 0.00 0.00 4.85
2932 5991 1.776662 AGCGACTATACCTTGCCAGA 58.223 50.000 0.00 0.00 0.00 3.86
2933 5992 1.409427 AGCGACTATACCTTGCCAGAC 59.591 52.381 0.00 0.00 0.00 3.51
2934 5993 1.136305 GCGACTATACCTTGCCAGACA 59.864 52.381 0.00 0.00 0.00 3.41
2935 5994 2.418197 GCGACTATACCTTGCCAGACAA 60.418 50.000 0.00 0.00 36.62 3.18
2936 5995 3.741388 GCGACTATACCTTGCCAGACAAT 60.741 47.826 0.00 0.00 37.72 2.71
2937 5996 4.051922 CGACTATACCTTGCCAGACAATC 58.948 47.826 0.00 0.00 37.72 2.67
2938 5997 4.441495 CGACTATACCTTGCCAGACAATCA 60.441 45.833 0.00 0.00 37.72 2.57
2939 5998 5.428253 GACTATACCTTGCCAGACAATCAA 58.572 41.667 0.00 0.00 37.72 2.57
2940 5999 5.186198 ACTATACCTTGCCAGACAATCAAC 58.814 41.667 0.00 0.00 37.72 3.18
2941 6000 2.363306 ACCTTGCCAGACAATCAACA 57.637 45.000 0.00 0.00 37.72 3.33
2942 6001 2.665165 ACCTTGCCAGACAATCAACAA 58.335 42.857 0.00 0.00 37.72 2.83
2943 6002 2.362077 ACCTTGCCAGACAATCAACAAC 59.638 45.455 0.00 0.00 37.72 3.32
2944 6003 2.361757 CCTTGCCAGACAATCAACAACA 59.638 45.455 0.00 0.00 37.72 3.33
2945 6004 3.374745 CTTGCCAGACAATCAACAACAC 58.625 45.455 0.00 0.00 37.72 3.32
2946 6005 2.653726 TGCCAGACAATCAACAACACT 58.346 42.857 0.00 0.00 0.00 3.55
2947 6006 3.814625 TGCCAGACAATCAACAACACTA 58.185 40.909 0.00 0.00 0.00 2.74
2948 6007 4.397420 TGCCAGACAATCAACAACACTAT 58.603 39.130 0.00 0.00 0.00 2.12
2949 6008 4.826733 TGCCAGACAATCAACAACACTATT 59.173 37.500 0.00 0.00 0.00 1.73
2950 6009 5.301551 TGCCAGACAATCAACAACACTATTT 59.698 36.000 0.00 0.00 0.00 1.40
2951 6010 6.183360 TGCCAGACAATCAACAACACTATTTT 60.183 34.615 0.00 0.00 0.00 1.82
2952 6011 6.144402 GCCAGACAATCAACAACACTATTTTG 59.856 38.462 0.00 0.00 0.00 2.44
2953 6012 7.424803 CCAGACAATCAACAACACTATTTTGA 58.575 34.615 0.00 0.00 32.71 2.69
2954 6013 7.592533 CCAGACAATCAACAACACTATTTTGAG 59.407 37.037 0.00 0.00 31.72 3.02
2955 6014 8.344831 CAGACAATCAACAACACTATTTTGAGA 58.655 33.333 0.00 0.00 31.72 3.27
2956 6015 8.345565 AGACAATCAACAACACTATTTTGAGAC 58.654 33.333 0.00 0.00 31.72 3.36
2957 6016 7.425606 ACAATCAACAACACTATTTTGAGACC 58.574 34.615 0.00 0.00 31.72 3.85
2958 6017 7.285401 ACAATCAACAACACTATTTTGAGACCT 59.715 33.333 0.00 0.00 31.72 3.85
2959 6018 8.783093 CAATCAACAACACTATTTTGAGACCTA 58.217 33.333 0.00 0.00 31.72 3.08
2960 6019 9.520515 AATCAACAACACTATTTTGAGACCTAT 57.479 29.630 0.00 0.00 31.72 2.57
2961 6020 8.322906 TCAACAACACTATTTTGAGACCTATG 57.677 34.615 0.00 0.00 0.00 2.23
2962 6021 6.743575 ACAACACTATTTTGAGACCTATGC 57.256 37.500 0.00 0.00 0.00 3.14
2963 6022 6.237901 ACAACACTATTTTGAGACCTATGCA 58.762 36.000 0.00 0.00 0.00 3.96
2964 6023 6.149474 ACAACACTATTTTGAGACCTATGCAC 59.851 38.462 0.00 0.00 0.00 4.57
2965 6024 6.054860 ACACTATTTTGAGACCTATGCACT 57.945 37.500 0.00 0.00 0.00 4.40
2966 6025 6.476378 ACACTATTTTGAGACCTATGCACTT 58.524 36.000 0.00 0.00 0.00 3.16
2967 6026 6.942576 ACACTATTTTGAGACCTATGCACTTT 59.057 34.615 0.00 0.00 0.00 2.66
2968 6027 7.448469 ACACTATTTTGAGACCTATGCACTTTT 59.552 33.333 0.00 0.00 0.00 2.27
2969 6028 8.299570 CACTATTTTGAGACCTATGCACTTTTT 58.700 33.333 0.00 0.00 0.00 1.94
2970 6029 8.299570 ACTATTTTGAGACCTATGCACTTTTTG 58.700 33.333 0.00 0.00 0.00 2.44
2971 6030 5.452078 TTTGAGACCTATGCACTTTTTGG 57.548 39.130 0.00 0.00 0.00 3.28
2972 6031 3.420893 TGAGACCTATGCACTTTTTGGG 58.579 45.455 0.00 0.00 0.00 4.12
2973 6032 2.755103 GAGACCTATGCACTTTTTGGGG 59.245 50.000 0.00 0.00 0.00 4.96
2974 6033 2.378547 AGACCTATGCACTTTTTGGGGA 59.621 45.455 0.00 0.00 0.00 4.81
2975 6034 3.161866 GACCTATGCACTTTTTGGGGAA 58.838 45.455 0.00 0.00 0.00 3.97
2976 6035 3.769300 GACCTATGCACTTTTTGGGGAAT 59.231 43.478 0.00 0.00 0.00 3.01
2977 6036 4.941713 ACCTATGCACTTTTTGGGGAATA 58.058 39.130 0.00 0.00 0.00 1.75
2978 6037 5.337788 ACCTATGCACTTTTTGGGGAATAA 58.662 37.500 0.00 0.00 0.00 1.40
2979 6038 5.782845 ACCTATGCACTTTTTGGGGAATAAA 59.217 36.000 0.00 0.00 0.00 1.40
2980 6039 6.106003 CCTATGCACTTTTTGGGGAATAAAC 58.894 40.000 0.00 0.00 0.00 2.01
2981 6040 5.559148 ATGCACTTTTTGGGGAATAAACA 57.441 34.783 0.00 0.00 0.00 2.83
2982 6041 4.698575 TGCACTTTTTGGGGAATAAACAC 58.301 39.130 0.00 0.00 0.00 3.32
2983 6042 4.407296 TGCACTTTTTGGGGAATAAACACT 59.593 37.500 0.00 0.00 0.00 3.55
2984 6043 4.988540 GCACTTTTTGGGGAATAAACACTC 59.011 41.667 0.00 0.00 0.00 3.51
2985 6044 5.221441 GCACTTTTTGGGGAATAAACACTCT 60.221 40.000 0.00 0.00 0.00 3.24
2986 6045 6.015772 GCACTTTTTGGGGAATAAACACTCTA 60.016 38.462 0.00 0.00 0.00 2.43
2987 6046 7.309805 GCACTTTTTGGGGAATAAACACTCTAT 60.310 37.037 0.00 0.00 0.00 1.98
2988 6047 8.585018 CACTTTTTGGGGAATAAACACTCTATT 58.415 33.333 0.00 0.00 0.00 1.73
2989 6048 8.585018 ACTTTTTGGGGAATAAACACTCTATTG 58.415 33.333 0.00 0.00 0.00 1.90
2990 6049 8.713708 TTTTTGGGGAATAAACACTCTATTGA 57.286 30.769 0.00 0.00 0.00 2.57
2991 6050 8.893563 TTTTGGGGAATAAACACTCTATTGAT 57.106 30.769 0.00 0.00 0.00 2.57
2992 6051 8.519799 TTTGGGGAATAAACACTCTATTGATC 57.480 34.615 0.00 0.00 0.00 2.92
2993 6052 7.206789 TGGGGAATAAACACTCTATTGATCA 57.793 36.000 0.00 0.00 0.00 2.92
2994 6053 7.815383 TGGGGAATAAACACTCTATTGATCAT 58.185 34.615 0.00 0.00 0.00 2.45
2995 6054 8.281531 TGGGGAATAAACACTCTATTGATCATT 58.718 33.333 0.00 0.00 0.00 2.57
2996 6055 9.793259 GGGGAATAAACACTCTATTGATCATTA 57.207 33.333 0.00 0.00 0.00 1.90
3011 6070 8.879342 ATTGATCATTAGAGACTTAACTTCCG 57.121 34.615 0.00 0.00 0.00 4.30
3012 6071 6.273825 TGATCATTAGAGACTTAACTTCCGC 58.726 40.000 0.00 0.00 0.00 5.54
3013 6072 5.916661 TCATTAGAGACTTAACTTCCGCT 57.083 39.130 0.00 0.00 0.00 5.52
3014 6073 7.284716 TGATCATTAGAGACTTAACTTCCGCTA 59.715 37.037 0.00 0.00 0.00 4.26
3015 6074 6.793349 TCATTAGAGACTTAACTTCCGCTAC 58.207 40.000 0.00 0.00 0.00 3.58
3016 6075 6.602406 TCATTAGAGACTTAACTTCCGCTACT 59.398 38.462 0.00 0.00 0.00 2.57
3017 6076 7.772292 TCATTAGAGACTTAACTTCCGCTACTA 59.228 37.037 0.00 0.00 0.00 1.82
3018 6077 7.928307 TTAGAGACTTAACTTCCGCTACTAA 57.072 36.000 0.00 0.00 0.00 2.24
3019 6078 6.830873 AGAGACTTAACTTCCGCTACTAAA 57.169 37.500 0.00 0.00 0.00 1.85
3020 6079 7.407393 AGAGACTTAACTTCCGCTACTAAAT 57.593 36.000 0.00 0.00 0.00 1.40
3021 6080 7.259161 AGAGACTTAACTTCCGCTACTAAATG 58.741 38.462 0.00 0.00 0.00 2.32
3022 6081 7.122353 AGAGACTTAACTTCCGCTACTAAATGA 59.878 37.037 0.00 0.00 0.00 2.57
3023 6082 7.034397 AGACTTAACTTCCGCTACTAAATGAC 58.966 38.462 0.00 0.00 0.00 3.06
3024 6083 6.104665 ACTTAACTTCCGCTACTAAATGACC 58.895 40.000 0.00 0.00 0.00 4.02
3025 6084 4.546829 AACTTCCGCTACTAAATGACCA 57.453 40.909 0.00 0.00 0.00 4.02
3026 6085 4.755266 ACTTCCGCTACTAAATGACCAT 57.245 40.909 0.00 0.00 0.00 3.55
3027 6086 5.864418 ACTTCCGCTACTAAATGACCATA 57.136 39.130 0.00 0.00 0.00 2.74
3028 6087 6.229936 ACTTCCGCTACTAAATGACCATAA 57.770 37.500 0.00 0.00 0.00 1.90
3029 6088 6.281405 ACTTCCGCTACTAAATGACCATAAG 58.719 40.000 0.00 0.00 0.00 1.73
3030 6089 4.628074 TCCGCTACTAAATGACCATAAGC 58.372 43.478 0.00 0.00 0.00 3.09
3031 6090 3.746492 CCGCTACTAAATGACCATAAGCC 59.254 47.826 0.00 0.00 0.00 4.35
3032 6091 3.428870 CGCTACTAAATGACCATAAGCCG 59.571 47.826 0.00 0.00 0.00 5.52
3033 6092 4.628074 GCTACTAAATGACCATAAGCCGA 58.372 43.478 0.00 0.00 0.00 5.54
3034 6093 5.054477 GCTACTAAATGACCATAAGCCGAA 58.946 41.667 0.00 0.00 0.00 4.30
3035 6094 5.050295 GCTACTAAATGACCATAAGCCGAAC 60.050 44.000 0.00 0.00 0.00 3.95
3036 6095 3.869246 ACTAAATGACCATAAGCCGAACG 59.131 43.478 0.00 0.00 0.00 3.95
3037 6096 2.684001 AATGACCATAAGCCGAACGA 57.316 45.000 0.00 0.00 0.00 3.85
3038 6097 2.910688 ATGACCATAAGCCGAACGAT 57.089 45.000 0.00 0.00 0.00 3.73
3039 6098 2.218953 TGACCATAAGCCGAACGATC 57.781 50.000 0.00 0.00 0.00 3.69
3040 6099 1.754803 TGACCATAAGCCGAACGATCT 59.245 47.619 0.00 0.00 0.00 2.75
3041 6100 2.953648 TGACCATAAGCCGAACGATCTA 59.046 45.455 0.00 0.00 0.00 1.98
3042 6101 3.382227 TGACCATAAGCCGAACGATCTAA 59.618 43.478 0.00 0.00 0.00 2.10
3043 6102 3.978687 ACCATAAGCCGAACGATCTAAG 58.021 45.455 0.00 0.00 0.00 2.18
3044 6103 2.731976 CCATAAGCCGAACGATCTAAGC 59.268 50.000 0.00 0.00 0.00 3.09
3045 6104 3.553096 CCATAAGCCGAACGATCTAAGCT 60.553 47.826 0.00 0.00 0.00 3.74
3046 6105 4.321008 CCATAAGCCGAACGATCTAAGCTA 60.321 45.833 0.00 0.00 0.00 3.32
3047 6106 2.778187 AGCCGAACGATCTAAGCTAC 57.222 50.000 0.00 0.00 0.00 3.58
3048 6107 2.022195 AGCCGAACGATCTAAGCTACA 58.978 47.619 0.00 0.00 0.00 2.74
3049 6108 2.033550 AGCCGAACGATCTAAGCTACAG 59.966 50.000 0.00 0.00 0.00 2.74
3050 6109 2.386249 CCGAACGATCTAAGCTACAGC 58.614 52.381 0.00 0.00 42.49 4.40
3068 6127 8.828029 GCTACAGCTTTATTCAAACTCATAAC 57.172 34.615 0.00 0.00 38.21 1.89
3069 6128 8.669243 GCTACAGCTTTATTCAAACTCATAACT 58.331 33.333 0.00 0.00 38.21 2.24
3108 6167 0.990818 GCCTCCCCCTCTGATTTCCT 60.991 60.000 0.00 0.00 0.00 3.36
3142 6201 7.206981 CCATATGGTGCTCCTAATAACAAAG 57.793 40.000 14.09 0.00 34.23 2.77
3165 6224 8.940768 AAGTAAAGCATAAAAGAAAACAGCAA 57.059 26.923 0.00 0.00 0.00 3.91
3171 6230 5.695816 GCATAAAAGAAAACAGCAACATCCA 59.304 36.000 0.00 0.00 0.00 3.41
3172 6231 6.128742 GCATAAAAGAAAACAGCAACATCCAG 60.129 38.462 0.00 0.00 0.00 3.86
3174 6233 1.267806 AGAAAACAGCAACATCCAGCG 59.732 47.619 0.00 0.00 35.48 5.18
3191 6250 4.814234 TCCAGCGATTAACATCCATTACAC 59.186 41.667 0.00 0.00 0.00 2.90
3205 6264 3.480470 CATTACACCAGATAGCCCAAGG 58.520 50.000 0.00 0.00 0.00 3.61
3236 6295 2.983898 ACCAAAAGCTAGACTAACCCCA 59.016 45.455 0.00 0.00 0.00 4.96
3247 6306 0.890683 CTAACCCCAGCAAAGCCAAG 59.109 55.000 0.00 0.00 0.00 3.61
3260 6319 3.047877 CCAAGGGGCAACGACGAC 61.048 66.667 0.00 0.00 37.60 4.34
3274 6333 1.795432 GACGACGCGCGAGGATTAAC 61.795 60.000 39.36 14.43 44.57 2.01
3309 6368 7.979537 AGTGACTGCAAAGTTTATATACATCGA 59.020 33.333 0.00 0.00 0.00 3.59
3324 6383 4.345859 ACATCGACAAAAGACAAGGGTA 57.654 40.909 0.00 0.00 0.00 3.69
3350 6409 8.556213 AAACTAGAAGTCAAACAAACACTACA 57.444 30.769 0.00 0.00 0.00 2.74
3357 6416 5.183140 AGTCAAACAAACACTACAAACAGCT 59.817 36.000 0.00 0.00 0.00 4.24
3362 6421 4.461081 ACAAACACTACAAACAGCTTCCAA 59.539 37.500 0.00 0.00 0.00 3.53
3398 6457 5.064452 ACAAAGCATCATCTTCGATCTTCAC 59.936 40.000 0.00 0.00 0.00 3.18
3399 6458 4.397481 AGCATCATCTTCGATCTTCACA 57.603 40.909 0.00 0.00 0.00 3.58
3400 6459 4.118410 AGCATCATCTTCGATCTTCACAC 58.882 43.478 0.00 0.00 0.00 3.82
3404 6463 2.921634 TCTTCGATCTTCACACTCCG 57.078 50.000 0.00 0.00 0.00 4.63
3408 6467 0.453793 CGATCTTCACACTCCGAGCT 59.546 55.000 0.00 0.00 0.00 4.09
3412 6471 1.621301 CTTCACACTCCGAGCTTGCG 61.621 60.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.517959 CACCCAGACACCAATGAATGT 58.482 47.619 0.00 0.00 0.00 2.71
56 57 9.671279 TTGTCACTCACATCAATTGAATATAGT 57.329 29.630 13.09 10.99 33.90 2.12
69 70 7.549134 TCACATTATTAGGTTGTCACTCACATC 59.451 37.037 0.00 0.00 33.90 3.06
70 71 7.394016 TCACATTATTAGGTTGTCACTCACAT 58.606 34.615 0.00 0.00 33.90 3.21
105 106 9.232473 TGCTACCACAACAATAATTACATGTAA 57.768 29.630 20.14 20.14 0.00 2.41
141 142 6.707440 TGGAAGAACACAAAGCTCAAAATA 57.293 33.333 0.00 0.00 0.00 1.40
142 143 5.596836 TGGAAGAACACAAAGCTCAAAAT 57.403 34.783 0.00 0.00 0.00 1.82
179 180 6.306356 GCGGCTTATATTGATTGCAAAGTATG 59.694 38.462 1.71 0.00 37.59 2.39
259 261 6.870971 TTTTTAGACGAATACCAAAGCACT 57.129 33.333 0.00 0.00 0.00 4.40
301 306 7.148018 GGATGAGCAATAAAAATTGAGGAGTGA 60.148 37.037 2.38 0.00 33.55 3.41
435 471 1.338337 GCAAGAGACTAGGCGATGCTA 59.662 52.381 13.87 0.00 0.00 3.49
446 482 1.963338 GGCGCACTTGCAAGAGACT 60.963 57.895 32.50 7.52 42.21 3.24
472 508 5.104527 TGGTGGTATGGACTTCTTTGATAGG 60.105 44.000 0.00 0.00 0.00 2.57
476 512 3.244770 GGTGGTGGTATGGACTTCTTTGA 60.245 47.826 0.00 0.00 0.00 2.69
660 708 4.208460 CAGTTACCACGTGCCTAAATATCG 59.792 45.833 10.91 0.00 0.00 2.92
679 727 7.229907 CCACTAACTGTTTGTTTATACCCAGTT 59.770 37.037 4.89 13.47 43.38 3.16
683 731 5.416639 CCCCACTAACTGTTTGTTTATACCC 59.583 44.000 4.89 0.00 39.89 3.69
684 732 5.106038 GCCCCACTAACTGTTTGTTTATACC 60.106 44.000 4.89 0.00 39.89 2.73
733 783 6.263344 TCTACTAACATTGCTAGCTTACGTG 58.737 40.000 17.23 9.61 0.00 4.49
757 807 3.296854 TGACTAGGCATCCACGATACTT 58.703 45.455 0.00 0.00 0.00 2.24
795 852 9.037737 GCAACAACTATAAATCGGTCACTAATA 57.962 33.333 0.00 0.00 0.00 0.98
865 925 4.796110 ATACAGGCATAAAGGTGGTCAT 57.204 40.909 0.00 0.00 0.00 3.06
866 926 5.702065 TTATACAGGCATAAAGGTGGTCA 57.298 39.130 0.00 0.00 0.00 4.02
868 928 6.323739 CCAATTTATACAGGCATAAAGGTGGT 59.676 38.462 10.30 0.00 36.23 4.16
954 1015 3.814842 TGCAAGACCTAACAATGTCTGTG 59.185 43.478 0.00 0.00 40.84 3.66
990 1057 1.244019 AAGCCGCCATGGTTTCTGTC 61.244 55.000 14.67 0.00 36.20 3.51
992 1059 3.685435 AAGCCGCCATGGTTTCTG 58.315 55.556 14.67 0.00 36.20 3.02
1144 1211 5.829924 AGTGAGCAAATCTTCTTCTTTTCCA 59.170 36.000 0.00 0.00 0.00 3.53
1145 1212 6.324561 AGTGAGCAAATCTTCTTCTTTTCC 57.675 37.500 0.00 0.00 0.00 3.13
1146 1213 6.206438 AGGAGTGAGCAAATCTTCTTCTTTTC 59.794 38.462 0.00 0.00 0.00 2.29
1147 1214 6.067350 AGGAGTGAGCAAATCTTCTTCTTTT 58.933 36.000 0.00 0.00 0.00 2.27
1295 1525 8.556194 GTTCCAAAAAGGTTTTATTGGATTCAC 58.444 33.333 6.90 0.04 37.09 3.18
1423 4251 9.935241 CCTGTATTATTACATTGCTATCTGAGT 57.065 33.333 0.00 0.00 37.68 3.41
1441 4269 9.569122 AAGAAAACTACAAAAGAGCCTGTATTA 57.431 29.630 0.00 0.00 0.00 0.98
1443 4271 9.000486 GTAAGAAAACTACAAAAGAGCCTGTAT 58.000 33.333 0.00 0.00 0.00 2.29
1740 4759 1.238439 GCATACACAGTTGCACACCT 58.762 50.000 0.00 0.00 38.72 4.00
1776 4796 1.278637 GTTCTTGCACACGAACCCG 59.721 57.895 8.41 0.00 42.50 5.28
1902 4922 4.335647 CCCAGCGTGTTCAGCCCT 62.336 66.667 0.00 0.00 34.64 5.19
1992 5012 2.143876 TGATCACGGTGAGGATCTCA 57.856 50.000 16.84 11.57 40.41 3.27
2279 5299 2.284798 CTGGATCCAGTCGACGGTGG 62.285 65.000 30.55 18.46 39.10 4.61
2421 5462 1.416050 GCCGTCCGTCCGTCATTTAC 61.416 60.000 0.00 0.00 0.00 2.01
2498 5544 2.224079 CCTCGATCCACAAACACACTTG 59.776 50.000 0.00 0.00 0.00 3.16
2499 5545 2.494059 CCTCGATCCACAAACACACTT 58.506 47.619 0.00 0.00 0.00 3.16
2500 5546 1.270839 CCCTCGATCCACAAACACACT 60.271 52.381 0.00 0.00 0.00 3.55
2638 5697 7.140705 CACTGTGAATTAGCAAAACTGATGAA 58.859 34.615 0.32 0.00 0.00 2.57
2643 5702 5.215160 GTCCACTGTGAATTAGCAAAACTG 58.785 41.667 9.86 0.00 0.00 3.16
2645 5704 4.219033 CGTCCACTGTGAATTAGCAAAAC 58.781 43.478 9.86 0.00 0.00 2.43
2658 5717 2.353406 CGGTTAATTCTCCGTCCACTGT 60.353 50.000 11.51 0.00 41.58 3.55
2661 5720 2.094338 ACTCGGTTAATTCTCCGTCCAC 60.094 50.000 16.89 0.00 45.88 4.02
2663 5722 2.094338 ACACTCGGTTAATTCTCCGTCC 60.094 50.000 16.89 0.00 45.88 4.79
2673 5732 1.541670 GGTTGGCTGACACTCGGTTAA 60.542 52.381 0.00 0.00 0.00 2.01
2676 5735 1.768684 ATGGTTGGCTGACACTCGGT 61.769 55.000 0.00 0.00 0.00 4.69
2678 5737 0.518636 CAATGGTTGGCTGACACTCG 59.481 55.000 0.00 0.00 0.00 4.18
2698 5757 5.647658 CAGCACCAATCTAAATAACACCAGA 59.352 40.000 0.00 0.00 0.00 3.86
2716 5775 6.262496 ACCTTAAGAAAAAGTACTTCAGCACC 59.738 38.462 8.95 0.00 0.00 5.01
2719 5778 7.492352 TCACCTTAAGAAAAAGTACTTCAGC 57.508 36.000 8.95 1.15 0.00 4.26
2734 5793 9.983804 GACCGAAAAATAAGTAATCACCTTAAG 57.016 33.333 0.00 0.00 0.00 1.85
2744 5803 5.634859 GTCCAGACGACCGAAAAATAAGTAA 59.365 40.000 0.00 0.00 35.23 2.24
2764 5823 1.078497 CTGCCATAAGCCACGTCCA 60.078 57.895 0.00 0.00 42.71 4.02
2765 5824 0.177141 TACTGCCATAAGCCACGTCC 59.823 55.000 0.00 0.00 42.71 4.79
2766 5825 1.571919 CTACTGCCATAAGCCACGTC 58.428 55.000 0.00 0.00 42.71 4.34
2769 5828 0.546598 ACCCTACTGCCATAAGCCAC 59.453 55.000 0.00 0.00 42.71 5.01
2807 5866 8.773645 CGTATTGGAATAACTATTGATCTTGCA 58.226 33.333 0.00 0.00 0.00 4.08
2808 5867 8.230486 CCGTATTGGAATAACTATTGATCTTGC 58.770 37.037 0.00 0.00 42.00 4.01
2809 5868 9.273016 ACCGTATTGGAATAACTATTGATCTTG 57.727 33.333 0.00 0.00 42.00 3.02
2812 5871 8.870879 GCTACCGTATTGGAATAACTATTGATC 58.129 37.037 0.00 0.00 42.00 2.92
2813 5872 7.544566 CGCTACCGTATTGGAATAACTATTGAT 59.455 37.037 0.00 0.00 42.00 2.57
2814 5873 6.864685 CGCTACCGTATTGGAATAACTATTGA 59.135 38.462 0.00 0.00 42.00 2.57
2815 5874 7.045725 CGCTACCGTATTGGAATAACTATTG 57.954 40.000 0.00 0.00 42.00 1.90
2827 5886 9.510490 CCAAAGGATTGTAACGCTACCGTATTG 62.510 44.444 0.00 0.00 39.83 1.90
2828 5887 7.616104 CCAAAGGATTGTAACGCTACCGTATT 61.616 42.308 0.00 0.00 39.83 1.89
2829 5888 6.194560 CCAAAGGATTGTAACGCTACCGTAT 61.195 44.000 0.00 0.00 39.83 3.06
2830 5889 4.915022 CCAAAGGATTGTAACGCTACCGTA 60.915 45.833 0.00 0.00 39.83 4.02
2831 5890 4.170973 CCAAAGGATTGTAACGCTACCGT 61.171 47.826 0.00 0.00 41.36 4.83
2832 5891 2.350498 CCAAAGGATTGTAACGCTACCG 59.650 50.000 0.00 0.00 36.23 4.02
2833 5892 2.096980 GCCAAAGGATTGTAACGCTACC 59.903 50.000 0.00 0.00 34.60 3.18
2834 5893 2.745281 TGCCAAAGGATTGTAACGCTAC 59.255 45.455 0.00 0.00 34.60 3.58
2835 5894 3.060736 TGCCAAAGGATTGTAACGCTA 57.939 42.857 0.00 0.00 34.60 4.26
2836 5895 1.904287 TGCCAAAGGATTGTAACGCT 58.096 45.000 0.00 0.00 34.60 5.07
2837 5896 2.227865 TCTTGCCAAAGGATTGTAACGC 59.772 45.455 0.00 0.00 34.60 4.84
2838 5897 4.497473 TTCTTGCCAAAGGATTGTAACG 57.503 40.909 0.00 0.00 34.60 3.18
2839 5898 5.869344 GGATTTCTTGCCAAAGGATTGTAAC 59.131 40.000 0.00 0.00 34.60 2.50
2840 5899 5.779771 AGGATTTCTTGCCAAAGGATTGTAA 59.220 36.000 0.00 0.00 34.60 2.41
2841 5900 5.332743 AGGATTTCTTGCCAAAGGATTGTA 58.667 37.500 0.00 0.00 34.60 2.41
2842 5901 4.162651 AGGATTTCTTGCCAAAGGATTGT 58.837 39.130 0.00 0.00 34.60 2.71
2843 5902 4.221262 TGAGGATTTCTTGCCAAAGGATTG 59.779 41.667 0.00 0.00 33.90 2.67
2844 5903 4.419282 TGAGGATTTCTTGCCAAAGGATT 58.581 39.130 0.00 0.00 33.90 3.01
2845 5904 4.051661 TGAGGATTTCTTGCCAAAGGAT 57.948 40.909 0.00 0.00 33.90 3.24
2846 5905 3.524095 TGAGGATTTCTTGCCAAAGGA 57.476 42.857 0.00 0.00 33.90 3.36
2847 5906 4.813750 ATTGAGGATTTCTTGCCAAAGG 57.186 40.909 0.00 0.00 33.90 3.11
2848 5907 6.271488 TGTATTGAGGATTTCTTGCCAAAG 57.729 37.500 0.00 0.00 34.45 2.77
2849 5908 6.436847 TCATGTATTGAGGATTTCTTGCCAAA 59.563 34.615 0.00 0.00 0.00 3.28
2850 5909 5.951148 TCATGTATTGAGGATTTCTTGCCAA 59.049 36.000 0.00 0.00 0.00 4.52
2851 5910 5.508567 TCATGTATTGAGGATTTCTTGCCA 58.491 37.500 0.00 0.00 0.00 4.92
2852 5911 6.069684 CTCATGTATTGAGGATTTCTTGCC 57.930 41.667 0.00 0.00 46.89 4.52
2864 5923 4.223953 GGTAGAGGACCCTCATGTATTGA 58.776 47.826 17.50 0.00 44.99 2.57
2865 5924 3.005897 CGGTAGAGGACCCTCATGTATTG 59.994 52.174 17.50 0.00 46.81 1.90
2866 5925 3.117246 TCGGTAGAGGACCCTCATGTATT 60.117 47.826 17.50 0.00 46.81 1.89
2867 5926 2.445905 TCGGTAGAGGACCCTCATGTAT 59.554 50.000 17.50 0.00 46.81 2.29
2868 5927 1.848388 TCGGTAGAGGACCCTCATGTA 59.152 52.381 17.50 0.00 46.81 2.29
2869 5928 0.629596 TCGGTAGAGGACCCTCATGT 59.370 55.000 17.50 0.67 46.81 3.21
2870 5929 1.323412 CTCGGTAGAGGACCCTCATG 58.677 60.000 17.50 5.01 46.81 3.07
2871 5930 0.468400 GCTCGGTAGAGGACCCTCAT 60.468 60.000 17.50 6.15 46.81 2.90
2872 5931 1.076923 GCTCGGTAGAGGACCCTCA 60.077 63.158 17.50 2.08 46.81 3.86
2873 5932 1.829096 GGCTCGGTAGAGGACCCTC 60.829 68.421 7.98 7.98 46.81 4.30
2874 5933 2.279408 GGCTCGGTAGAGGACCCT 59.721 66.667 0.00 0.00 46.81 4.34
2875 5934 2.043248 TGGCTCGGTAGAGGACCC 60.043 66.667 0.00 0.00 46.81 4.46
2876 5935 1.681327 TGTGGCTCGGTAGAGGACC 60.681 63.158 0.00 0.00 44.51 4.46
2877 5936 1.248785 TGTGTGGCTCGGTAGAGGAC 61.249 60.000 0.00 0.00 44.51 3.85
2878 5937 0.541063 TTGTGTGGCTCGGTAGAGGA 60.541 55.000 0.00 0.00 44.51 3.71
2879 5938 0.389948 GTTGTGTGGCTCGGTAGAGG 60.390 60.000 0.00 0.00 44.51 3.69
2881 5940 1.669440 GGTTGTGTGGCTCGGTAGA 59.331 57.895 0.00 0.00 0.00 2.59
2882 5941 1.736645 CGGTTGTGTGGCTCGGTAG 60.737 63.158 0.00 0.00 0.00 3.18
2883 5942 1.177895 TACGGTTGTGTGGCTCGGTA 61.178 55.000 0.00 0.00 0.00 4.02
2884 5943 2.430382 CTACGGTTGTGTGGCTCGGT 62.430 60.000 0.00 0.00 0.00 4.69
2885 5944 1.736645 CTACGGTTGTGTGGCTCGG 60.737 63.158 0.00 0.00 0.00 4.63
2886 5945 2.380410 GCTACGGTTGTGTGGCTCG 61.380 63.158 0.00 0.00 42.41 5.03
2887 5946 3.562635 GCTACGGTTGTGTGGCTC 58.437 61.111 0.00 0.00 42.41 4.70
2889 5948 1.574428 CAAGCTACGGTTGTGTGGC 59.426 57.895 0.00 0.00 45.61 5.01
2890 5949 0.884704 AGCAAGCTACGGTTGTGTGG 60.885 55.000 7.50 0.00 42.18 4.17
2891 5950 0.512952 GAGCAAGCTACGGTTGTGTG 59.487 55.000 7.50 0.00 42.18 3.82
2892 5951 0.105964 TGAGCAAGCTACGGTTGTGT 59.894 50.000 7.50 0.00 42.18 3.72
2893 5952 1.225855 TTGAGCAAGCTACGGTTGTG 58.774 50.000 7.50 0.00 42.18 3.33
2894 5953 1.873591 CTTTGAGCAAGCTACGGTTGT 59.126 47.619 7.50 0.00 42.18 3.32
2895 5954 2.601481 CTTTGAGCAAGCTACGGTTG 57.399 50.000 0.00 1.72 42.93 3.77
2904 5963 3.786635 AGGTATAGTCGCTTTGAGCAAG 58.213 45.455 0.50 0.00 42.58 4.01
2905 5964 3.887621 AGGTATAGTCGCTTTGAGCAA 57.112 42.857 0.50 0.00 42.58 3.91
2906 5965 3.521560 CAAGGTATAGTCGCTTTGAGCA 58.478 45.455 0.50 0.00 42.58 4.26
2907 5966 2.285488 GCAAGGTATAGTCGCTTTGAGC 59.715 50.000 0.00 0.00 38.02 4.26
2908 5967 2.866762 GGCAAGGTATAGTCGCTTTGAG 59.133 50.000 0.00 0.00 0.00 3.02
2909 5968 2.235155 TGGCAAGGTATAGTCGCTTTGA 59.765 45.455 0.00 0.00 0.00 2.69
2910 5969 2.609459 CTGGCAAGGTATAGTCGCTTTG 59.391 50.000 0.00 0.00 0.00 2.77
2911 5970 2.500098 TCTGGCAAGGTATAGTCGCTTT 59.500 45.455 0.00 0.00 0.00 3.51
2912 5971 2.108168 TCTGGCAAGGTATAGTCGCTT 58.892 47.619 0.00 0.00 0.00 4.68
2913 5972 1.409427 GTCTGGCAAGGTATAGTCGCT 59.591 52.381 0.00 0.00 0.00 4.93
2914 5973 1.136305 TGTCTGGCAAGGTATAGTCGC 59.864 52.381 0.00 0.00 0.00 5.19
2915 5974 3.520290 TTGTCTGGCAAGGTATAGTCG 57.480 47.619 0.00 0.00 32.52 4.18
2916 5975 5.023533 TGATTGTCTGGCAAGGTATAGTC 57.976 43.478 0.00 0.00 40.86 2.59
2917 5976 5.186198 GTTGATTGTCTGGCAAGGTATAGT 58.814 41.667 0.00 0.00 40.86 2.12
2918 5977 5.185454 TGTTGATTGTCTGGCAAGGTATAG 58.815 41.667 0.00 0.00 40.86 1.31
2919 5978 5.172687 TGTTGATTGTCTGGCAAGGTATA 57.827 39.130 0.00 0.00 40.86 1.47
2920 5979 4.032960 TGTTGATTGTCTGGCAAGGTAT 57.967 40.909 0.00 0.00 40.86 2.73
2921 5980 3.500448 TGTTGATTGTCTGGCAAGGTA 57.500 42.857 0.00 0.00 40.86 3.08
2922 5981 2.362077 GTTGTTGATTGTCTGGCAAGGT 59.638 45.455 0.00 0.00 40.86 3.50
2923 5982 2.361757 TGTTGTTGATTGTCTGGCAAGG 59.638 45.455 0.00 0.00 40.86 3.61
2924 5983 3.067180 AGTGTTGTTGATTGTCTGGCAAG 59.933 43.478 0.00 0.00 40.86 4.01
2925 5984 3.023119 AGTGTTGTTGATTGTCTGGCAA 58.977 40.909 0.00 0.00 41.89 4.52
2926 5985 2.653726 AGTGTTGTTGATTGTCTGGCA 58.346 42.857 0.00 0.00 0.00 4.92
2927 5986 5.376854 AATAGTGTTGTTGATTGTCTGGC 57.623 39.130 0.00 0.00 0.00 4.85
2928 5987 7.424803 TCAAAATAGTGTTGTTGATTGTCTGG 58.575 34.615 0.00 0.00 0.00 3.86
2929 5988 8.344831 TCTCAAAATAGTGTTGTTGATTGTCTG 58.655 33.333 0.00 0.00 30.06 3.51
2930 5989 8.345565 GTCTCAAAATAGTGTTGTTGATTGTCT 58.654 33.333 0.00 0.00 30.06 3.41
2931 5990 7.591426 GGTCTCAAAATAGTGTTGTTGATTGTC 59.409 37.037 0.00 0.00 30.06 3.18
2932 5991 7.285401 AGGTCTCAAAATAGTGTTGTTGATTGT 59.715 33.333 0.00 0.00 30.06 2.71
2933 5992 7.651808 AGGTCTCAAAATAGTGTTGTTGATTG 58.348 34.615 0.00 0.00 30.06 2.67
2934 5993 7.823745 AGGTCTCAAAATAGTGTTGTTGATT 57.176 32.000 0.00 0.00 30.06 2.57
2935 5994 8.950210 CATAGGTCTCAAAATAGTGTTGTTGAT 58.050 33.333 0.00 0.00 30.06 2.57
2936 5995 7.094805 GCATAGGTCTCAAAATAGTGTTGTTGA 60.095 37.037 0.00 0.00 0.00 3.18
2937 5996 7.023575 GCATAGGTCTCAAAATAGTGTTGTTG 58.976 38.462 0.00 0.00 0.00 3.33
2938 5997 6.714810 TGCATAGGTCTCAAAATAGTGTTGTT 59.285 34.615 0.00 0.00 0.00 2.83
2939 5998 6.149474 GTGCATAGGTCTCAAAATAGTGTTGT 59.851 38.462 0.00 0.00 0.00 3.32
2940 5999 6.372659 AGTGCATAGGTCTCAAAATAGTGTTG 59.627 38.462 0.00 0.00 0.00 3.33
2941 6000 6.476378 AGTGCATAGGTCTCAAAATAGTGTT 58.524 36.000 0.00 0.00 0.00 3.32
2942 6001 6.054860 AGTGCATAGGTCTCAAAATAGTGT 57.945 37.500 0.00 0.00 0.00 3.55
2943 6002 6.992063 AAGTGCATAGGTCTCAAAATAGTG 57.008 37.500 0.00 0.00 0.00 2.74
2944 6003 8.299570 CAAAAAGTGCATAGGTCTCAAAATAGT 58.700 33.333 0.00 0.00 0.00 2.12
2945 6004 7.756722 CCAAAAAGTGCATAGGTCTCAAAATAG 59.243 37.037 0.00 0.00 0.00 1.73
2946 6005 7.309744 CCCAAAAAGTGCATAGGTCTCAAAATA 60.310 37.037 0.00 0.00 0.00 1.40
2947 6006 6.458210 CCAAAAAGTGCATAGGTCTCAAAAT 58.542 36.000 0.00 0.00 0.00 1.82
2948 6007 5.221422 CCCAAAAAGTGCATAGGTCTCAAAA 60.221 40.000 0.00 0.00 0.00 2.44
2949 6008 4.280677 CCCAAAAAGTGCATAGGTCTCAAA 59.719 41.667 0.00 0.00 0.00 2.69
2950 6009 3.826157 CCCAAAAAGTGCATAGGTCTCAA 59.174 43.478 0.00 0.00 0.00 3.02
2951 6010 3.420893 CCCAAAAAGTGCATAGGTCTCA 58.579 45.455 0.00 0.00 0.00 3.27
2952 6011 2.755103 CCCCAAAAAGTGCATAGGTCTC 59.245 50.000 0.00 0.00 0.00 3.36
2953 6012 2.378547 TCCCCAAAAAGTGCATAGGTCT 59.621 45.455 0.00 0.00 0.00 3.85
2954 6013 2.802719 TCCCCAAAAAGTGCATAGGTC 58.197 47.619 0.00 0.00 0.00 3.85
2955 6014 2.990740 TCCCCAAAAAGTGCATAGGT 57.009 45.000 0.00 0.00 0.00 3.08
2956 6015 5.930837 TTATTCCCCAAAAAGTGCATAGG 57.069 39.130 0.00 0.00 0.00 2.57
2957 6016 6.589907 GTGTTTATTCCCCAAAAAGTGCATAG 59.410 38.462 0.00 0.00 0.00 2.23
2958 6017 6.268847 AGTGTTTATTCCCCAAAAAGTGCATA 59.731 34.615 0.00 0.00 0.00 3.14
2959 6018 5.071653 AGTGTTTATTCCCCAAAAAGTGCAT 59.928 36.000 0.00 0.00 0.00 3.96
2960 6019 4.407296 AGTGTTTATTCCCCAAAAAGTGCA 59.593 37.500 0.00 0.00 0.00 4.57
2961 6020 4.956085 AGTGTTTATTCCCCAAAAAGTGC 58.044 39.130 0.00 0.00 0.00 4.40
2962 6021 6.405278 AGAGTGTTTATTCCCCAAAAAGTG 57.595 37.500 0.00 0.00 0.00 3.16
2963 6022 8.585018 CAATAGAGTGTTTATTCCCCAAAAAGT 58.415 33.333 0.00 0.00 0.00 2.66
2964 6023 8.802267 TCAATAGAGTGTTTATTCCCCAAAAAG 58.198 33.333 0.00 0.00 0.00 2.27
2965 6024 8.713708 TCAATAGAGTGTTTATTCCCCAAAAA 57.286 30.769 0.00 0.00 0.00 1.94
2966 6025 8.893563 ATCAATAGAGTGTTTATTCCCCAAAA 57.106 30.769 0.00 0.00 0.00 2.44
2967 6026 8.112822 TGATCAATAGAGTGTTTATTCCCCAAA 58.887 33.333 0.00 0.00 0.00 3.28
2968 6027 7.638444 TGATCAATAGAGTGTTTATTCCCCAA 58.362 34.615 0.00 0.00 0.00 4.12
2969 6028 7.206789 TGATCAATAGAGTGTTTATTCCCCA 57.793 36.000 0.00 0.00 0.00 4.96
2970 6029 8.697507 AATGATCAATAGAGTGTTTATTCCCC 57.302 34.615 0.00 0.00 0.00 4.81
2985 6044 9.967346 CGGAAGTTAAGTCTCTAATGATCAATA 57.033 33.333 0.00 0.00 0.00 1.90
2986 6045 7.439655 GCGGAAGTTAAGTCTCTAATGATCAAT 59.560 37.037 0.00 0.00 0.00 2.57
2987 6046 6.757010 GCGGAAGTTAAGTCTCTAATGATCAA 59.243 38.462 0.00 0.00 0.00 2.57
2988 6047 6.096987 AGCGGAAGTTAAGTCTCTAATGATCA 59.903 38.462 0.00 0.00 0.00 2.92
2989 6048 6.508777 AGCGGAAGTTAAGTCTCTAATGATC 58.491 40.000 0.00 0.00 0.00 2.92
2990 6049 6.472686 AGCGGAAGTTAAGTCTCTAATGAT 57.527 37.500 0.00 0.00 0.00 2.45
2991 6050 5.916661 AGCGGAAGTTAAGTCTCTAATGA 57.083 39.130 0.00 0.00 0.00 2.57
2992 6051 6.797454 AGTAGCGGAAGTTAAGTCTCTAATG 58.203 40.000 0.00 0.00 0.00 1.90
2993 6052 8.517062 TTAGTAGCGGAAGTTAAGTCTCTAAT 57.483 34.615 0.00 0.00 0.00 1.73
2994 6053 7.928307 TTAGTAGCGGAAGTTAAGTCTCTAA 57.072 36.000 0.00 0.00 0.00 2.10
2995 6054 7.928307 TTTAGTAGCGGAAGTTAAGTCTCTA 57.072 36.000 0.00 0.00 0.00 2.43
2996 6055 6.830873 TTTAGTAGCGGAAGTTAAGTCTCT 57.169 37.500 0.00 0.00 0.00 3.10
2997 6056 7.220491 GTCATTTAGTAGCGGAAGTTAAGTCTC 59.780 40.741 0.00 0.00 0.00 3.36
2998 6057 7.034397 GTCATTTAGTAGCGGAAGTTAAGTCT 58.966 38.462 0.00 0.00 0.00 3.24
2999 6058 6.255237 GGTCATTTAGTAGCGGAAGTTAAGTC 59.745 42.308 0.00 0.00 0.00 3.01
3000 6059 6.104665 GGTCATTTAGTAGCGGAAGTTAAGT 58.895 40.000 0.00 0.00 0.00 2.24
3001 6060 6.103997 TGGTCATTTAGTAGCGGAAGTTAAG 58.896 40.000 0.00 0.00 0.00 1.85
3002 6061 6.040209 TGGTCATTTAGTAGCGGAAGTTAA 57.960 37.500 0.00 0.00 0.00 2.01
3003 6062 5.664294 TGGTCATTTAGTAGCGGAAGTTA 57.336 39.130 0.00 0.00 0.00 2.24
3004 6063 4.546829 TGGTCATTTAGTAGCGGAAGTT 57.453 40.909 0.00 0.00 0.00 2.66
3005 6064 4.755266 ATGGTCATTTAGTAGCGGAAGT 57.245 40.909 0.00 0.00 0.00 3.01
3006 6065 5.177696 GCTTATGGTCATTTAGTAGCGGAAG 59.822 44.000 0.00 0.00 0.00 3.46
3007 6066 5.054477 GCTTATGGTCATTTAGTAGCGGAA 58.946 41.667 0.00 0.00 0.00 4.30
3008 6067 4.502604 GGCTTATGGTCATTTAGTAGCGGA 60.503 45.833 0.00 0.00 0.00 5.54
3009 6068 3.746492 GGCTTATGGTCATTTAGTAGCGG 59.254 47.826 0.00 0.00 0.00 5.52
3010 6069 3.428870 CGGCTTATGGTCATTTAGTAGCG 59.571 47.826 0.00 0.00 0.00 4.26
3011 6070 4.628074 TCGGCTTATGGTCATTTAGTAGC 58.372 43.478 0.00 0.00 0.00 3.58
3012 6071 5.175126 CGTTCGGCTTATGGTCATTTAGTAG 59.825 44.000 0.00 0.00 0.00 2.57
3013 6072 5.045215 CGTTCGGCTTATGGTCATTTAGTA 58.955 41.667 0.00 0.00 0.00 1.82
3014 6073 3.869246 CGTTCGGCTTATGGTCATTTAGT 59.131 43.478 0.00 0.00 0.00 2.24
3015 6074 4.116961 TCGTTCGGCTTATGGTCATTTAG 58.883 43.478 0.00 0.00 0.00 1.85
3016 6075 4.126208 TCGTTCGGCTTATGGTCATTTA 57.874 40.909 0.00 0.00 0.00 1.40
3017 6076 2.980568 TCGTTCGGCTTATGGTCATTT 58.019 42.857 0.00 0.00 0.00 2.32
3018 6077 2.684001 TCGTTCGGCTTATGGTCATT 57.316 45.000 0.00 0.00 0.00 2.57
3019 6078 2.365617 AGATCGTTCGGCTTATGGTCAT 59.634 45.455 0.00 0.00 0.00 3.06
3020 6079 1.754803 AGATCGTTCGGCTTATGGTCA 59.245 47.619 0.00 0.00 0.00 4.02
3021 6080 2.510768 AGATCGTTCGGCTTATGGTC 57.489 50.000 0.00 0.00 0.00 4.02
3022 6081 3.799232 GCTTAGATCGTTCGGCTTATGGT 60.799 47.826 0.00 0.00 0.00 3.55
3023 6082 2.731976 GCTTAGATCGTTCGGCTTATGG 59.268 50.000 0.00 0.00 0.00 2.74
3024 6083 3.643763 AGCTTAGATCGTTCGGCTTATG 58.356 45.455 6.06 0.00 0.00 1.90
3025 6084 4.277672 TGTAGCTTAGATCGTTCGGCTTAT 59.722 41.667 13.58 0.00 32.47 1.73
3026 6085 3.628942 TGTAGCTTAGATCGTTCGGCTTA 59.371 43.478 13.58 5.17 32.47 3.09
3027 6086 2.426024 TGTAGCTTAGATCGTTCGGCTT 59.574 45.455 13.58 3.48 32.47 4.35
3028 6087 2.022195 TGTAGCTTAGATCGTTCGGCT 58.978 47.619 0.00 13.14 33.84 5.52
3029 6088 2.386249 CTGTAGCTTAGATCGTTCGGC 58.614 52.381 0.00 0.00 0.00 5.54
3030 6089 2.386249 GCTGTAGCTTAGATCGTTCGG 58.614 52.381 0.00 0.00 38.21 4.30
3043 6102 8.669243 AGTTATGAGTTTGAATAAAGCTGTAGC 58.331 33.333 0.00 0.00 42.49 3.58
3071 6130 3.763897 GAGGCCCTTCTTATGCTCAAAAA 59.236 43.478 0.00 0.00 0.00 1.94
3072 6131 3.356290 GAGGCCCTTCTTATGCTCAAAA 58.644 45.455 0.00 0.00 0.00 2.44
3073 6132 2.357154 GGAGGCCCTTCTTATGCTCAAA 60.357 50.000 0.00 0.00 0.00 2.69
3076 6135 0.109532 GGGAGGCCCTTCTTATGCTC 59.890 60.000 0.00 0.00 41.34 4.26
3142 6201 8.125728 TGTTGCTGTTTTCTTTTATGCTTTAC 57.874 30.769 0.00 0.00 0.00 2.01
3165 6224 3.558931 TGGATGTTAATCGCTGGATGT 57.441 42.857 0.00 0.00 33.18 3.06
3171 6230 4.776349 TGGTGTAATGGATGTTAATCGCT 58.224 39.130 0.00 0.00 33.18 4.93
3172 6231 4.814234 TCTGGTGTAATGGATGTTAATCGC 59.186 41.667 0.00 0.00 33.18 4.58
3174 6233 7.119846 GGCTATCTGGTGTAATGGATGTTAATC 59.880 40.741 0.00 0.00 0.00 1.75
3205 6264 0.752658 AGCTTTTGGTTGGTCTTGGC 59.247 50.000 0.00 0.00 0.00 4.52
3260 6319 2.237751 CCTGGTTAATCCTCGCGCG 61.238 63.158 26.76 26.76 37.07 6.86
3274 6333 0.179020 TTGCAGTCACTGGAACCTGG 60.179 55.000 7.81 0.00 36.92 4.45
3309 6368 7.832685 ACTTCTAGTTTTACCCTTGTCTTTTGT 59.167 33.333 0.00 0.00 0.00 2.83
3317 6376 7.562454 TGTTTGACTTCTAGTTTTACCCTTG 57.438 36.000 0.00 0.00 0.00 3.61
3318 6377 8.464404 GTTTGTTTGACTTCTAGTTTTACCCTT 58.536 33.333 0.00 0.00 0.00 3.95
3324 6383 9.005777 TGTAGTGTTTGTTTGACTTCTAGTTTT 57.994 29.630 0.00 0.00 0.00 2.43
3350 6409 1.597663 CGTTCTCGTTGGAAGCTGTTT 59.402 47.619 0.00 0.00 0.00 2.83
3371 6430 6.154203 AGATCGAAGATGATGCTTTGTCTA 57.846 37.500 0.00 0.00 45.12 2.59
3404 6463 2.565841 AGATATGGTTTCCGCAAGCTC 58.434 47.619 0.00 0.00 33.66 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.