Multiple sequence alignment - TraesCS2B01G481400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G481400 chr2B 100.000 4470 0 0 1 4470 679811669 679816138 0.000000e+00 8255.0
1 TraesCS2B01G481400 chr2B 92.400 750 33 6 3682 4429 679885215 679885942 0.000000e+00 1048.0
2 TraesCS2B01G481400 chr2A 93.739 1182 40 11 3279 4434 706643455 706644628 0.000000e+00 1742.0
3 TraesCS2B01G481400 chr2A 90.246 1138 59 20 697 1819 706640634 706641734 0.000000e+00 1439.0
4 TraesCS2B01G481400 chr2A 92.236 747 34 6 3682 4426 706741348 706742072 0.000000e+00 1037.0
5 TraesCS2B01G481400 chr2A 91.770 644 45 4 2564 3200 706641828 706642470 0.000000e+00 889.0
6 TraesCS2B01G481400 chr2A 82.589 448 49 9 280 699 706632717 706633163 7.060000e-98 368.0
7 TraesCS2B01G481400 chr2A 100.000 45 0 0 2507 2551 706641738 706641782 2.870000e-12 84.2
8 TraesCS2B01G481400 chr2A 87.719 57 7 0 782 838 508601303 508601247 2.890000e-07 67.6
9 TraesCS2B01G481400 chr2A 87.719 57 7 0 782 838 508601955 508601899 2.890000e-07 67.6
10 TraesCS2B01G481400 chr2D 95.914 1028 26 7 3456 4467 566835064 566836091 0.000000e+00 1652.0
11 TraesCS2B01G481400 chr2D 91.657 887 46 20 2554 3434 566834218 566835082 0.000000e+00 1203.0
12 TraesCS2B01G481400 chr2D 88.685 928 45 26 906 1819 566833236 566834117 0.000000e+00 1077.0
13 TraesCS2B01G481400 chr2D 92.339 744 33 8 3685 4426 566979871 566980592 0.000000e+00 1037.0
14 TraesCS2B01G481400 chr2D 82.913 515 53 15 432 911 566832485 566832999 8.880000e-117 431.0
15 TraesCS2B01G481400 chr2D 81.208 298 47 7 2134 2425 27317353 27317647 9.670000e-57 231.0
16 TraesCS2B01G481400 chr2D 96.429 56 2 0 2496 2551 566834127 566834182 4.760000e-15 93.5
17 TraesCS2B01G481400 chr7A 91.554 663 46 7 1834 2493 124411204 124411859 0.000000e+00 905.0
18 TraesCS2B01G481400 chr7A 88.823 671 50 10 1834 2493 642531233 642530577 0.000000e+00 800.0
19 TraesCS2B01G481400 chr7A 89.490 647 44 10 1820 2445 79594503 79595146 0.000000e+00 797.0
20 TraesCS2B01G481400 chr7A 82.993 294 35 11 2134 2423 547090148 547089866 7.420000e-63 252.0
21 TraesCS2B01G481400 chr7A 81.538 325 40 13 1406 1713 64608849 64609170 2.670000e-62 250.0
22 TraesCS2B01G481400 chr7A 82.847 274 37 5 1036 1306 64608475 64608741 2.080000e-58 237.0
23 TraesCS2B01G481400 chr5B 90.115 607 46 9 1883 2486 476074637 476075232 0.000000e+00 776.0
24 TraesCS2B01G481400 chr5B 85.329 668 43 20 1834 2492 610283291 610282670 1.360000e-179 640.0
25 TraesCS2B01G481400 chr4B 90.813 566 47 5 1882 2445 529339560 529340122 0.000000e+00 752.0
26 TraesCS2B01G481400 chr4B 92.000 50 4 0 1834 1883 529339490 529339539 2.230000e-08 71.3
27 TraesCS2B01G481400 chr7D 83.273 275 34 7 1036 1306 60279108 60279374 4.470000e-60 243.0
28 TraesCS2B01G481400 chr7D 81.290 310 39 12 1410 1705 60279478 60279782 2.690000e-57 233.0
29 TraesCS2B01G481400 chr7B 81.877 309 37 12 1411 1705 2784688 2784991 4.470000e-60 243.0
30 TraesCS2B01G481400 chr7B 88.764 178 17 1 1130 1307 2784438 2784612 9.740000e-52 215.0
31 TraesCS2B01G481400 chr1B 81.250 304 46 10 2108 2405 152516476 152516178 7.480000e-58 235.0
32 TraesCS2B01G481400 chr3B 83.058 242 36 4 2178 2417 697981251 697981013 9.740000e-52 215.0
33 TraesCS2B01G481400 chr6B 100.000 33 0 0 805 837 502790237 502790269 1.340000e-05 62.1
34 TraesCS2B01G481400 chr1D 87.500 56 4 3 782 835 479511875 479511821 1.340000e-05 62.1
35 TraesCS2B01G481400 chr4D 89.583 48 4 1 782 829 482334738 482334784 4.830000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G481400 chr2B 679811669 679816138 4469 False 8255.00 8255 100.00000 1 4470 1 chr2B.!!$F1 4469
1 TraesCS2B01G481400 chr2B 679885215 679885942 727 False 1048.00 1048 92.40000 3682 4429 1 chr2B.!!$F2 747
2 TraesCS2B01G481400 chr2A 706640634 706644628 3994 False 1038.55 1742 93.93875 697 4434 4 chr2A.!!$F3 3737
3 TraesCS2B01G481400 chr2A 706741348 706742072 724 False 1037.00 1037 92.23600 3682 4426 1 chr2A.!!$F2 744
4 TraesCS2B01G481400 chr2D 566979871 566980592 721 False 1037.00 1037 92.33900 3685 4426 1 chr2D.!!$F2 741
5 TraesCS2B01G481400 chr2D 566832485 566836091 3606 False 891.30 1652 91.11960 432 4467 5 chr2D.!!$F3 4035
6 TraesCS2B01G481400 chr7A 124411204 124411859 655 False 905.00 905 91.55400 1834 2493 1 chr7A.!!$F2 659
7 TraesCS2B01G481400 chr7A 642530577 642531233 656 True 800.00 800 88.82300 1834 2493 1 chr7A.!!$R2 659
8 TraesCS2B01G481400 chr7A 79594503 79595146 643 False 797.00 797 89.49000 1820 2445 1 chr7A.!!$F1 625
9 TraesCS2B01G481400 chr7A 64608475 64609170 695 False 243.50 250 82.19250 1036 1713 2 chr7A.!!$F3 677
10 TraesCS2B01G481400 chr5B 476074637 476075232 595 False 776.00 776 90.11500 1883 2486 1 chr5B.!!$F1 603
11 TraesCS2B01G481400 chr5B 610282670 610283291 621 True 640.00 640 85.32900 1834 2492 1 chr5B.!!$R1 658
12 TraesCS2B01G481400 chr4B 529339490 529340122 632 False 411.65 752 91.40650 1834 2445 2 chr4B.!!$F1 611
13 TraesCS2B01G481400 chr7D 60279108 60279782 674 False 238.00 243 82.28150 1036 1705 2 chr7D.!!$F1 669
14 TraesCS2B01G481400 chr7B 2784438 2784991 553 False 229.00 243 85.32050 1130 1705 2 chr7B.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.036875 CAAGTCCCAGGTCCCAGTTC 59.963 60.0 0.00 0.0 0.00 3.01 F
103 104 0.037605 ACGCCACAACTGCTAGTACC 60.038 55.0 0.00 0.0 0.00 3.34 F
264 265 0.099259 CATCATCGTTGGCGTGCATT 59.901 50.0 0.00 0.0 39.49 3.56 F
1043 1326 0.103208 GGAATCGGATGCGACTCTGT 59.897 55.0 17.37 0.0 0.00 3.41 F
1806 2193 0.179100 ATGACAGGCCGACGAAGATG 60.179 55.0 0.00 0.0 0.00 2.90 F
1852 2247 0.984432 TCCCATGCATGAGAGAGCCA 60.984 55.0 28.31 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1413 1772 0.534412 AGTCCCTGAACTCATCTGCG 59.466 55.000 0.00 0.00 0.00 5.18 R
1785 2168 1.079819 CTTCGTCGGCCTGTCATGT 60.080 57.895 0.00 0.00 0.00 3.21 R
2105 2524 1.462616 TCCGCTGGGAATCACAATTG 58.537 50.000 3.24 3.24 40.15 2.32 R
3035 3525 0.105760 ATGGCAAGTTGGTGGTTCCA 60.106 50.000 4.75 2.55 45.60 3.53 R
3080 3570 1.668101 GGTCTCACGGCTCTACCTGG 61.668 65.000 0.00 0.00 35.61 4.45 R
3513 4923 1.791785 GATCGAGGAGGAGTACGTACG 59.208 57.143 19.49 15.01 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.817844 TGTCTATGATGGTATCCGGTCG 59.182 50.000 0.00 0.00 0.00 4.79
23 24 3.079578 GTCTATGATGGTATCCGGTCGA 58.920 50.000 0.00 0.00 0.00 4.20
24 25 3.079578 TCTATGATGGTATCCGGTCGAC 58.920 50.000 7.13 7.13 0.00 4.20
25 26 0.596577 ATGATGGTATCCGGTCGACG 59.403 55.000 9.92 4.95 43.80 5.12
44 45 4.465512 CGCTGCCGCACATGTTCC 62.466 66.667 0.00 0.00 35.30 3.62
45 46 4.465512 GCTGCCGCACATGTTCCG 62.466 66.667 0.00 1.70 35.78 4.30
46 47 3.803082 CTGCCGCACATGTTCCGG 61.803 66.667 23.68 23.68 44.58 5.14
49 50 3.499737 CCGCACATGTTCCGGCTC 61.500 66.667 18.52 0.00 35.14 4.70
50 51 2.741985 CGCACATGTTCCGGCTCA 60.742 61.111 0.00 0.00 0.00 4.26
51 52 2.324330 CGCACATGTTCCGGCTCAA 61.324 57.895 0.00 0.00 0.00 3.02
52 53 1.503542 GCACATGTTCCGGCTCAAG 59.496 57.895 0.00 0.00 0.00 3.02
53 54 1.237285 GCACATGTTCCGGCTCAAGT 61.237 55.000 0.00 0.00 0.00 3.16
54 55 0.798776 CACATGTTCCGGCTCAAGTC 59.201 55.000 0.00 0.00 0.00 3.01
55 56 0.321653 ACATGTTCCGGCTCAAGTCC 60.322 55.000 0.00 0.00 0.00 3.85
56 57 1.026718 CATGTTCCGGCTCAAGTCCC 61.027 60.000 0.00 0.00 0.00 4.46
57 58 1.488705 ATGTTCCGGCTCAAGTCCCA 61.489 55.000 0.00 0.00 0.00 4.37
58 59 1.376037 GTTCCGGCTCAAGTCCCAG 60.376 63.158 0.00 0.00 0.00 4.45
59 60 2.592993 TTCCGGCTCAAGTCCCAGG 61.593 63.158 0.00 0.00 0.00 4.45
60 61 3.322466 CCGGCTCAAGTCCCAGGT 61.322 66.667 0.00 0.00 0.00 4.00
61 62 2.266055 CGGCTCAAGTCCCAGGTC 59.734 66.667 0.00 0.00 0.00 3.85
62 63 2.671682 GGCTCAAGTCCCAGGTCC 59.328 66.667 0.00 0.00 0.00 4.46
63 64 2.671682 GCTCAAGTCCCAGGTCCC 59.328 66.667 0.00 0.00 0.00 4.46
64 65 2.224159 GCTCAAGTCCCAGGTCCCA 61.224 63.158 0.00 0.00 0.00 4.37
65 66 1.986413 CTCAAGTCCCAGGTCCCAG 59.014 63.158 0.00 0.00 0.00 4.45
66 67 0.838122 CTCAAGTCCCAGGTCCCAGT 60.838 60.000 0.00 0.00 0.00 4.00
67 68 0.401395 TCAAGTCCCAGGTCCCAGTT 60.401 55.000 0.00 0.00 0.00 3.16
68 69 0.036875 CAAGTCCCAGGTCCCAGTTC 59.963 60.000 0.00 0.00 0.00 3.01
69 70 1.134438 AAGTCCCAGGTCCCAGTTCC 61.134 60.000 0.00 0.00 0.00 3.62
70 71 2.204090 TCCCAGGTCCCAGTTCCC 60.204 66.667 0.00 0.00 0.00 3.97
71 72 3.339093 CCCAGGTCCCAGTTCCCC 61.339 72.222 0.00 0.00 0.00 4.81
72 73 2.204151 CCAGGTCCCAGTTCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
73 74 2.606587 CCAGGTCCCAGTTCCCCTG 61.607 68.421 0.00 0.00 43.34 4.45
74 75 1.847968 CAGGTCCCAGTTCCCCTGT 60.848 63.158 0.00 0.00 39.70 4.00
75 76 1.072930 AGGTCCCAGTTCCCCTGTT 60.073 57.895 0.00 0.00 39.74 3.16
76 77 0.701310 AGGTCCCAGTTCCCCTGTTT 60.701 55.000 0.00 0.00 39.74 2.83
77 78 0.251209 GGTCCCAGTTCCCCTGTTTC 60.251 60.000 0.00 0.00 39.74 2.78
78 79 0.476771 GTCCCAGTTCCCCTGTTTCA 59.523 55.000 0.00 0.00 39.74 2.69
79 80 0.476771 TCCCAGTTCCCCTGTTTCAC 59.523 55.000 0.00 0.00 39.74 3.18
80 81 0.539669 CCCAGTTCCCCTGTTTCACC 60.540 60.000 0.00 0.00 39.74 4.02
81 82 0.539669 CCAGTTCCCCTGTTTCACCC 60.540 60.000 0.00 0.00 39.74 4.61
82 83 0.539669 CAGTTCCCCTGTTTCACCCC 60.540 60.000 0.00 0.00 36.37 4.95
83 84 1.228769 GTTCCCCTGTTTCACCCCC 60.229 63.158 0.00 0.00 0.00 5.40
84 85 1.701757 TTCCCCTGTTTCACCCCCA 60.702 57.895 0.00 0.00 0.00 4.96
85 86 2.014033 TTCCCCTGTTTCACCCCCAC 62.014 60.000 0.00 0.00 0.00 4.61
86 87 2.282180 CCCTGTTTCACCCCCACG 60.282 66.667 0.00 0.00 0.00 4.94
87 88 2.983592 CCTGTTTCACCCCCACGC 60.984 66.667 0.00 0.00 0.00 5.34
88 89 2.983592 CTGTTTCACCCCCACGCC 60.984 66.667 0.00 0.00 0.00 5.68
89 90 3.783362 CTGTTTCACCCCCACGCCA 62.783 63.158 0.00 0.00 0.00 5.69
90 91 3.292159 GTTTCACCCCCACGCCAC 61.292 66.667 0.00 0.00 0.00 5.01
91 92 3.810188 TTTCACCCCCACGCCACA 61.810 61.111 0.00 0.00 0.00 4.17
92 93 3.360423 TTTCACCCCCACGCCACAA 62.360 57.895 0.00 0.00 0.00 3.33
93 94 4.572571 TCACCCCCACGCCACAAC 62.573 66.667 0.00 0.00 0.00 3.32
94 95 4.579384 CACCCCCACGCCACAACT 62.579 66.667 0.00 0.00 0.00 3.16
95 96 4.579384 ACCCCCACGCCACAACTG 62.579 66.667 0.00 0.00 0.00 3.16
97 98 4.954970 CCCCACGCCACAACTGCT 62.955 66.667 0.00 0.00 0.00 4.24
98 99 2.031919 CCCACGCCACAACTGCTA 59.968 61.111 0.00 0.00 0.00 3.49
99 100 2.034879 CCCACGCCACAACTGCTAG 61.035 63.158 0.00 0.00 0.00 3.42
100 101 1.301716 CCACGCCACAACTGCTAGT 60.302 57.895 0.00 0.00 0.00 2.57
101 102 0.037697 CCACGCCACAACTGCTAGTA 60.038 55.000 0.00 0.00 0.00 1.82
102 103 1.068474 CACGCCACAACTGCTAGTAC 58.932 55.000 0.00 0.00 0.00 2.73
103 104 0.037605 ACGCCACAACTGCTAGTACC 60.038 55.000 0.00 0.00 0.00 3.34
104 105 0.739813 CGCCACAACTGCTAGTACCC 60.740 60.000 0.00 0.00 0.00 3.69
105 106 0.739813 GCCACAACTGCTAGTACCCG 60.740 60.000 0.00 0.00 0.00 5.28
106 107 0.892755 CCACAACTGCTAGTACCCGA 59.107 55.000 0.00 0.00 0.00 5.14
107 108 1.274167 CCACAACTGCTAGTACCCGAA 59.726 52.381 0.00 0.00 0.00 4.30
108 109 2.607187 CACAACTGCTAGTACCCGAAG 58.393 52.381 0.00 0.00 0.00 3.79
109 110 2.029290 CACAACTGCTAGTACCCGAAGT 60.029 50.000 0.00 0.00 0.00 3.01
110 111 2.631545 ACAACTGCTAGTACCCGAAGTT 59.368 45.455 0.61 0.61 0.00 2.66
111 112 2.993899 CAACTGCTAGTACCCGAAGTTG 59.006 50.000 14.89 14.89 38.75 3.16
112 113 1.549170 ACTGCTAGTACCCGAAGTTGG 59.451 52.381 0.00 0.00 0.00 3.77
124 125 2.678336 CCGAAGTTGGGATACTTGAAGC 59.322 50.000 0.00 0.00 38.43 3.86
125 126 3.600388 CGAAGTTGGGATACTTGAAGCT 58.400 45.455 0.00 0.00 38.43 3.74
126 127 3.619038 CGAAGTTGGGATACTTGAAGCTC 59.381 47.826 0.00 0.00 38.43 4.09
127 128 3.252974 AGTTGGGATACTTGAAGCTCG 57.747 47.619 0.00 0.00 0.00 5.03
128 129 1.666189 GTTGGGATACTTGAAGCTCGC 59.334 52.381 0.00 0.00 0.00 5.03
129 130 0.901827 TGGGATACTTGAAGCTCGCA 59.098 50.000 9.89 9.89 0.00 5.10
130 131 1.277842 TGGGATACTTGAAGCTCGCAA 59.722 47.619 11.07 0.00 0.00 4.85
131 132 1.666189 GGGATACTTGAAGCTCGCAAC 59.334 52.381 7.31 0.00 0.00 4.17
132 133 1.324736 GGATACTTGAAGCTCGCAACG 59.675 52.381 0.00 0.00 0.00 4.10
133 134 0.721718 ATACTTGAAGCTCGCAACGC 59.278 50.000 0.00 0.00 0.00 4.84
134 135 0.598942 TACTTGAAGCTCGCAACGCA 60.599 50.000 0.00 0.00 0.00 5.24
135 136 1.154525 CTTGAAGCTCGCAACGCAG 60.155 57.895 0.00 0.00 0.00 5.18
136 137 1.560004 CTTGAAGCTCGCAACGCAGA 61.560 55.000 0.00 0.00 0.00 4.26
137 138 1.157257 TTGAAGCTCGCAACGCAGAA 61.157 50.000 0.00 0.00 0.00 3.02
138 139 1.154580 GAAGCTCGCAACGCAGAAC 60.155 57.895 0.00 0.00 0.00 3.01
139 140 2.500183 GAAGCTCGCAACGCAGAACC 62.500 60.000 0.00 0.00 0.00 3.62
140 141 4.090057 GCTCGCAACGCAGAACCC 62.090 66.667 0.00 0.00 0.00 4.11
141 142 3.423154 CTCGCAACGCAGAACCCC 61.423 66.667 0.00 0.00 0.00 4.95
144 145 3.723348 GCAACGCAGAACCCCGAC 61.723 66.667 0.00 0.00 0.00 4.79
145 146 3.411351 CAACGCAGAACCCCGACG 61.411 66.667 0.00 0.00 0.00 5.12
146 147 4.675029 AACGCAGAACCCCGACGG 62.675 66.667 6.99 6.99 37.81 4.79
150 151 4.796231 CAGAACCCCGACGGCGAG 62.796 72.222 15.16 5.44 40.82 5.03
152 153 3.834799 GAACCCCGACGGCGAGAT 61.835 66.667 15.16 0.00 40.82 2.75
153 154 4.143333 AACCCCGACGGCGAGATG 62.143 66.667 15.16 0.00 40.82 2.90
155 156 4.271816 CCCCGACGGCGAGATGAG 62.272 72.222 15.16 0.00 40.82 2.90
156 157 3.518998 CCCGACGGCGAGATGAGT 61.519 66.667 15.16 0.00 40.82 3.41
157 158 2.184830 CCCGACGGCGAGATGAGTA 61.185 63.158 15.16 0.00 40.82 2.59
158 159 1.280142 CCGACGGCGAGATGAGTAG 59.720 63.158 15.16 0.00 40.82 2.57
159 160 1.369448 CGACGGCGAGATGAGTAGC 60.369 63.158 16.62 0.00 40.82 3.58
160 161 1.777030 CGACGGCGAGATGAGTAGCT 61.777 60.000 16.62 0.00 40.82 3.32
161 162 0.317436 GACGGCGAGATGAGTAGCTG 60.317 60.000 16.62 0.00 41.40 4.24
162 163 1.007964 CGGCGAGATGAGTAGCTGG 60.008 63.158 0.00 0.00 32.73 4.85
163 164 1.729470 CGGCGAGATGAGTAGCTGGT 61.729 60.000 0.00 0.00 32.73 4.00
164 165 0.249238 GGCGAGATGAGTAGCTGGTG 60.249 60.000 0.00 0.00 0.00 4.17
165 166 0.741326 GCGAGATGAGTAGCTGGTGA 59.259 55.000 0.00 0.00 0.00 4.02
166 167 1.339610 GCGAGATGAGTAGCTGGTGAT 59.660 52.381 0.00 0.00 0.00 3.06
167 168 2.554462 GCGAGATGAGTAGCTGGTGATA 59.446 50.000 0.00 0.00 0.00 2.15
168 169 3.610585 GCGAGATGAGTAGCTGGTGATAC 60.611 52.174 0.00 0.00 35.48 2.24
169 170 3.565902 CGAGATGAGTAGCTGGTGATACA 59.434 47.826 0.00 0.00 37.51 2.29
170 171 4.217334 CGAGATGAGTAGCTGGTGATACAT 59.783 45.833 0.00 0.00 37.51 2.29
171 172 5.278709 CGAGATGAGTAGCTGGTGATACATT 60.279 44.000 0.00 0.00 37.51 2.71
172 173 5.851720 AGATGAGTAGCTGGTGATACATTG 58.148 41.667 0.00 0.00 37.51 2.82
173 174 5.600069 AGATGAGTAGCTGGTGATACATTGA 59.400 40.000 0.00 0.00 37.51 2.57
174 175 5.675684 TGAGTAGCTGGTGATACATTGAA 57.324 39.130 0.00 0.00 37.51 2.69
175 176 5.419542 TGAGTAGCTGGTGATACATTGAAC 58.580 41.667 0.00 0.00 37.51 3.18
176 177 4.433615 AGTAGCTGGTGATACATTGAACG 58.566 43.478 0.00 0.00 37.51 3.95
177 178 3.610040 AGCTGGTGATACATTGAACGA 57.390 42.857 0.00 0.00 0.00 3.85
178 179 3.262420 AGCTGGTGATACATTGAACGAC 58.738 45.455 0.00 0.00 0.00 4.34
179 180 3.000041 GCTGGTGATACATTGAACGACA 59.000 45.455 0.00 0.00 0.00 4.35
180 181 3.435327 GCTGGTGATACATTGAACGACAA 59.565 43.478 0.00 0.00 42.95 3.18
181 182 4.083537 GCTGGTGATACATTGAACGACAAA 60.084 41.667 0.00 0.00 42.03 2.83
182 183 5.391950 GCTGGTGATACATTGAACGACAAAT 60.392 40.000 0.00 0.00 42.03 2.32
183 184 6.567687 TGGTGATACATTGAACGACAAATT 57.432 33.333 0.00 0.00 42.03 1.82
184 185 6.377780 TGGTGATACATTGAACGACAAATTG 58.622 36.000 0.00 0.00 42.03 2.32
185 186 6.205658 TGGTGATACATTGAACGACAAATTGA 59.794 34.615 0.00 0.00 42.03 2.57
186 187 6.742718 GGTGATACATTGAACGACAAATTGAG 59.257 38.462 0.00 0.00 42.03 3.02
187 188 7.360861 GGTGATACATTGAACGACAAATTGAGA 60.361 37.037 0.00 0.00 42.03 3.27
188 189 8.015087 GTGATACATTGAACGACAAATTGAGAA 58.985 33.333 0.00 0.00 42.03 2.87
189 190 8.229811 TGATACATTGAACGACAAATTGAGAAG 58.770 33.333 0.00 0.00 42.03 2.85
190 191 6.618287 ACATTGAACGACAAATTGAGAAGA 57.382 33.333 0.00 0.00 42.03 2.87
191 192 7.026631 ACATTGAACGACAAATTGAGAAGAA 57.973 32.000 0.00 0.00 42.03 2.52
192 193 7.134815 ACATTGAACGACAAATTGAGAAGAAG 58.865 34.615 0.00 0.00 42.03 2.85
193 194 5.095691 TGAACGACAAATTGAGAAGAAGC 57.904 39.130 0.00 0.00 0.00 3.86
194 195 4.574421 TGAACGACAAATTGAGAAGAAGCA 59.426 37.500 0.00 0.00 0.00 3.91
195 196 5.239306 TGAACGACAAATTGAGAAGAAGCAT 59.761 36.000 0.00 0.00 0.00 3.79
196 197 5.039480 ACGACAAATTGAGAAGAAGCATG 57.961 39.130 0.00 0.00 0.00 4.06
197 198 4.083110 ACGACAAATTGAGAAGAAGCATGG 60.083 41.667 0.00 0.00 0.00 3.66
198 199 4.083110 CGACAAATTGAGAAGAAGCATGGT 60.083 41.667 0.00 0.00 0.00 3.55
199 200 5.382618 ACAAATTGAGAAGAAGCATGGTC 57.617 39.130 0.00 0.00 0.00 4.02
200 201 4.083110 ACAAATTGAGAAGAAGCATGGTCG 60.083 41.667 0.00 0.00 0.00 4.79
201 202 2.099141 TTGAGAAGAAGCATGGTCGG 57.901 50.000 0.00 0.00 0.00 4.79
202 203 0.391661 TGAGAAGAAGCATGGTCGGC 60.392 55.000 0.00 0.00 0.00 5.54
203 204 1.424493 GAGAAGAAGCATGGTCGGCG 61.424 60.000 0.00 0.00 36.08 6.46
204 205 3.100862 GAAGAAGCATGGTCGGCGC 62.101 63.158 0.00 0.00 36.08 6.53
205 206 3.899981 AAGAAGCATGGTCGGCGCA 62.900 57.895 10.83 0.00 36.08 6.09
206 207 4.166011 GAAGCATGGTCGGCGCAC 62.166 66.667 10.83 0.00 36.08 5.34
220 221 3.749064 GCACCCACTCGCTCGAGA 61.749 66.667 23.95 0.00 44.53 4.04
221 222 2.179517 CACCCACTCGCTCGAGAC 59.820 66.667 23.95 6.70 44.53 3.36
222 223 3.063084 ACCCACTCGCTCGAGACC 61.063 66.667 23.95 0.00 44.53 3.85
223 224 3.062466 CCCACTCGCTCGAGACCA 61.062 66.667 23.95 0.00 44.53 4.02
224 225 2.487428 CCACTCGCTCGAGACCAG 59.513 66.667 23.95 10.29 44.53 4.00
225 226 2.487428 CACTCGCTCGAGACCAGG 59.513 66.667 23.95 3.27 44.53 4.45
226 227 2.041115 CACTCGCTCGAGACCAGGA 61.041 63.158 23.95 3.62 44.53 3.86
227 228 2.041686 ACTCGCTCGAGACCAGGAC 61.042 63.158 23.95 0.00 44.53 3.85
228 229 1.747367 CTCGCTCGAGACCAGGACT 60.747 63.158 18.75 0.00 44.53 3.85
229 230 1.987704 CTCGCTCGAGACCAGGACTG 61.988 65.000 18.75 0.00 44.53 3.51
230 231 2.183046 GCTCGAGACCAGGACTGC 59.817 66.667 18.75 0.00 0.00 4.40
231 232 2.888863 CTCGAGACCAGGACTGCC 59.111 66.667 6.58 0.00 0.00 4.85
232 233 2.680352 TCGAGACCAGGACTGCCC 60.680 66.667 0.00 0.00 33.31 5.36
233 234 2.997315 CGAGACCAGGACTGCCCA 60.997 66.667 0.00 0.00 37.41 5.36
234 235 2.583441 CGAGACCAGGACTGCCCAA 61.583 63.158 0.00 0.00 37.41 4.12
235 236 1.298014 GAGACCAGGACTGCCCAAG 59.702 63.158 0.00 0.00 37.41 3.61
236 237 2.190488 GAGACCAGGACTGCCCAAGG 62.190 65.000 0.00 0.00 38.08 3.61
237 238 3.260100 ACCAGGACTGCCCAAGGG 61.260 66.667 0.00 0.00 36.87 3.95
255 256 3.017323 GCTCGGCCATCATCGTTG 58.983 61.111 2.24 0.00 0.00 4.10
256 257 2.537560 GCTCGGCCATCATCGTTGG 61.538 63.158 2.24 0.00 37.31 3.77
261 262 2.404789 CCATCATCGTTGGCGTGC 59.595 61.111 0.00 0.00 39.49 5.34
262 263 2.397754 CCATCATCGTTGGCGTGCA 61.398 57.895 0.00 0.00 39.49 4.57
263 264 1.717791 CCATCATCGTTGGCGTGCAT 61.718 55.000 0.00 0.00 39.49 3.96
264 265 0.099259 CATCATCGTTGGCGTGCATT 59.901 50.000 0.00 0.00 39.49 3.56
265 266 0.810648 ATCATCGTTGGCGTGCATTT 59.189 45.000 0.00 0.00 39.49 2.32
266 267 0.595588 TCATCGTTGGCGTGCATTTT 59.404 45.000 0.00 0.00 39.49 1.82
267 268 0.709467 CATCGTTGGCGTGCATTTTG 59.291 50.000 0.00 0.00 39.49 2.44
268 269 0.313672 ATCGTTGGCGTGCATTTTGT 59.686 45.000 0.00 0.00 39.49 2.83
269 270 0.593518 TCGTTGGCGTGCATTTTGTG 60.594 50.000 0.00 0.00 39.49 3.33
279 280 2.813100 CATTTTGTGCCAACTCCGC 58.187 52.632 0.00 0.00 0.00 5.54
280 281 0.667184 CATTTTGTGCCAACTCCGCC 60.667 55.000 0.00 0.00 0.00 6.13
281 282 1.112315 ATTTTGTGCCAACTCCGCCA 61.112 50.000 0.00 0.00 0.00 5.69
282 283 1.112315 TTTTGTGCCAACTCCGCCAT 61.112 50.000 0.00 0.00 0.00 4.40
283 284 1.523154 TTTGTGCCAACTCCGCCATC 61.523 55.000 0.00 0.00 0.00 3.51
284 285 3.499737 GTGCCAACTCCGCCATCG 61.500 66.667 0.00 0.00 0.00 3.84
288 289 4.776322 CAACTCCGCCATCGCCCA 62.776 66.667 0.00 0.00 0.00 5.36
289 290 4.778143 AACTCCGCCATCGCCCAC 62.778 66.667 0.00 0.00 0.00 4.61
295 296 4.899239 GCCATCGCCCACCTCGAG 62.899 72.222 5.13 5.13 39.47 4.04
296 297 4.227134 CCATCGCCCACCTCGAGG 62.227 72.222 30.11 30.11 39.47 4.63
297 298 3.147595 CATCGCCCACCTCGAGGA 61.148 66.667 37.69 14.94 39.72 3.71
298 299 2.835431 ATCGCCCACCTCGAGGAG 60.835 66.667 37.69 29.04 39.47 3.69
303 304 3.842923 CCACCTCGAGGAGCGCAT 61.843 66.667 37.69 11.69 40.61 4.73
304 305 2.490148 CCACCTCGAGGAGCGCATA 61.490 63.158 37.69 0.00 40.61 3.14
305 306 1.007964 CACCTCGAGGAGCGCATAG 60.008 63.158 37.69 8.26 40.61 2.23
306 307 2.851071 ACCTCGAGGAGCGCATAGC 61.851 63.158 37.69 0.00 42.09 2.97
315 316 3.211963 GCGCATAGCCTGGTTGGG 61.212 66.667 0.30 1.13 40.81 4.12
316 317 2.516930 CGCATAGCCTGGTTGGGG 60.517 66.667 0.00 0.00 36.00 4.96
317 318 2.123726 GCATAGCCTGGTTGGGGG 60.124 66.667 0.00 0.00 36.00 5.40
318 319 2.689691 GCATAGCCTGGTTGGGGGA 61.690 63.158 0.00 0.00 36.00 4.81
319 320 1.533711 CATAGCCTGGTTGGGGGAG 59.466 63.158 0.00 0.00 36.00 4.30
320 321 1.697754 ATAGCCTGGTTGGGGGAGG 60.698 63.158 0.00 0.00 36.00 4.30
321 322 2.208562 ATAGCCTGGTTGGGGGAGGA 62.209 60.000 0.00 0.00 36.00 3.71
322 323 4.048470 GCCTGGTTGGGGGAGGAC 62.048 72.222 0.00 0.00 36.00 3.85
323 324 3.717294 CCTGGTTGGGGGAGGACG 61.717 72.222 0.00 0.00 0.00 4.79
324 325 2.928396 CTGGTTGGGGGAGGACGT 60.928 66.667 0.00 0.00 0.00 4.34
325 326 3.246112 TGGTTGGGGGAGGACGTG 61.246 66.667 0.00 0.00 0.00 4.49
326 327 3.246880 GGTTGGGGGAGGACGTGT 61.247 66.667 0.00 0.00 0.00 4.49
327 328 2.346365 GTTGGGGGAGGACGTGTC 59.654 66.667 0.00 0.00 0.00 3.67
328 329 3.307906 TTGGGGGAGGACGTGTCG 61.308 66.667 0.00 0.00 0.00 4.35
331 332 2.758737 GGGGAGGACGTGTCGGAT 60.759 66.667 0.00 0.00 0.00 4.18
332 333 2.494918 GGGAGGACGTGTCGGATG 59.505 66.667 0.00 0.00 0.00 3.51
333 334 2.494918 GGAGGACGTGTCGGATGG 59.505 66.667 0.00 0.00 0.00 3.51
334 335 2.494918 GAGGACGTGTCGGATGGG 59.505 66.667 0.00 0.00 0.00 4.00
335 336 3.075005 AGGACGTGTCGGATGGGG 61.075 66.667 0.00 0.00 0.00 4.96
336 337 3.387947 GGACGTGTCGGATGGGGT 61.388 66.667 0.00 0.00 0.00 4.95
337 338 2.125673 GACGTGTCGGATGGGGTG 60.126 66.667 0.00 0.00 0.00 4.61
338 339 3.659089 GACGTGTCGGATGGGGTGG 62.659 68.421 0.00 0.00 0.00 4.61
339 340 3.702048 CGTGTCGGATGGGGTGGT 61.702 66.667 0.00 0.00 0.00 4.16
340 341 2.046314 GTGTCGGATGGGGTGGTG 60.046 66.667 0.00 0.00 0.00 4.17
341 342 4.028490 TGTCGGATGGGGTGGTGC 62.028 66.667 0.00 0.00 0.00 5.01
371 372 4.976925 CATGGGCGGCGCTAGGAG 62.977 72.222 32.30 14.13 0.00 3.69
380 381 3.877357 CGCTAGGAGTGCGCTCGA 61.877 66.667 20.49 10.40 46.72 4.04
381 382 2.025441 GCTAGGAGTGCGCTCGAG 59.975 66.667 20.49 19.47 42.53 4.04
382 383 2.025441 CTAGGAGTGCGCTCGAGC 59.975 66.667 27.64 27.64 42.53 5.03
383 384 3.477224 CTAGGAGTGCGCTCGAGCC 62.477 68.421 30.66 22.70 42.53 4.70
399 400 4.003788 CCCGTCACCGCTCACCTT 62.004 66.667 0.00 0.00 0.00 3.50
400 401 2.738521 CCGTCACCGCTCACCTTG 60.739 66.667 0.00 0.00 0.00 3.61
401 402 2.338620 CGTCACCGCTCACCTTGA 59.661 61.111 0.00 0.00 0.00 3.02
402 403 1.734477 CGTCACCGCTCACCTTGAG 60.734 63.158 0.00 0.00 46.90 3.02
403 404 1.374758 GTCACCGCTCACCTTGAGG 60.375 63.158 5.37 0.00 44.43 3.86
425 426 2.879462 GCGTCGCGTAGTTGGAGG 60.879 66.667 5.77 0.00 0.00 4.30
426 427 2.202570 CGTCGCGTAGTTGGAGGG 60.203 66.667 5.77 0.00 0.00 4.30
427 428 2.183555 GTCGCGTAGTTGGAGGGG 59.816 66.667 5.77 0.00 0.00 4.79
428 429 3.766691 TCGCGTAGTTGGAGGGGC 61.767 66.667 5.77 0.00 0.00 5.80
429 430 4.077184 CGCGTAGTTGGAGGGGCA 62.077 66.667 0.00 0.00 0.00 5.36
430 431 2.436115 GCGTAGTTGGAGGGGCAC 60.436 66.667 0.00 0.00 0.00 5.01
434 435 1.534476 TAGTTGGAGGGGCACGTCA 60.534 57.895 11.36 0.00 33.26 4.35
458 459 2.203337 GTGGTGTGGGCAGCTTCA 60.203 61.111 0.00 0.00 43.05 3.02
459 460 2.113774 TGGTGTGGGCAGCTTCAG 59.886 61.111 0.00 0.00 43.05 3.02
463 464 2.674380 GTGGGCAGCTTCAGTGGG 60.674 66.667 0.00 0.00 0.00 4.61
597 622 2.233271 CAAGGTGCAGAGTGGTTGAAT 58.767 47.619 0.00 0.00 0.00 2.57
622 647 1.427819 GGCGTTTGGATAAGGTGCG 59.572 57.895 0.00 0.00 0.00 5.34
645 670 1.760875 GAGTGGGGATAGTGGGCGA 60.761 63.158 0.00 0.00 0.00 5.54
647 672 2.039787 TGGGGATAGTGGGCGACA 59.960 61.111 1.61 0.00 0.00 4.35
662 687 2.681778 ACAGGGGAGAGGACTGCG 60.682 66.667 0.00 0.00 35.70 5.18
666 691 4.459089 GGGAGAGGACTGCGTGGC 62.459 72.222 0.00 0.00 35.29 5.01
675 700 4.552365 CTGCGTGGCGATGGGGAT 62.552 66.667 0.00 0.00 0.00 3.85
677 702 2.110213 GCGTGGCGATGGGGATAA 59.890 61.111 0.00 0.00 0.00 1.75
683 708 0.765510 GGCGATGGGGATAAAGGAGT 59.234 55.000 0.00 0.00 0.00 3.85
684 709 1.143073 GGCGATGGGGATAAAGGAGTT 59.857 52.381 0.00 0.00 0.00 3.01
701 726 1.067749 TTGGAAACGTTCGCTCCGA 59.932 52.632 11.81 7.95 31.37 4.55
749 774 1.977188 CGTGACGTGTCATTAGCTCA 58.023 50.000 5.91 0.00 42.18 4.26
757 782 2.160417 GTGTCATTAGCTCAGTGCCAAC 59.840 50.000 0.00 0.00 44.23 3.77
798 826 2.006888 CAGAAAATACGTCATGGCGGT 58.993 47.619 25.37 12.07 35.98 5.68
810 838 0.392461 ATGGCGGTATTGCTTCGTGT 60.392 50.000 0.00 0.00 34.52 4.49
820 850 0.936600 TGCTTCGTGTCACATGTGTG 59.063 50.000 24.63 13.39 46.91 3.82
978 1261 1.620323 GGTCCGGGCGGTATATAAAGT 59.380 52.381 0.00 0.00 36.47 2.66
1043 1326 0.103208 GGAATCGGATGCGACTCTGT 59.897 55.000 17.37 0.00 0.00 3.41
1142 1428 4.502950 GCAAATCATGGAAGGGAAACAACA 60.503 41.667 0.00 0.00 0.00 3.33
1177 1464 1.987855 CCTCCGGGCTACCACTTCA 60.988 63.158 0.00 0.00 36.13 3.02
1190 1477 2.434359 CTTCACCCCGACGGAAGC 60.434 66.667 17.49 0.00 32.54 3.86
1307 1594 1.202313 GGAGCAGATCACAGGTACGTC 60.202 57.143 0.00 0.00 0.00 4.34
1308 1595 0.452184 AGCAGATCACAGGTACGTCG 59.548 55.000 0.00 0.00 0.00 5.12
1310 1597 0.809385 CAGATCACAGGTACGTCGGT 59.191 55.000 0.00 0.00 0.00 4.69
1312 1599 2.012673 AGATCACAGGTACGTCGGTAC 58.987 52.381 0.00 0.00 46.69 3.34
1315 1602 0.449388 CACAGGTACGTCGGTACTCC 59.551 60.000 0.00 0.00 46.62 3.85
1317 1604 0.677731 CAGGTACGTCGGTACTCCCA 60.678 60.000 0.00 0.00 46.62 4.37
1337 1624 0.391528 TCCATCATCAGCACACACCG 60.392 55.000 0.00 0.00 0.00 4.94
1351 1641 1.006571 CACCGTGACTAGCGTTGGT 60.007 57.895 0.00 0.00 0.00 3.67
1355 1645 1.493772 CGTGACTAGCGTTGGTTTGA 58.506 50.000 0.00 0.00 0.00 2.69
1356 1646 2.066262 CGTGACTAGCGTTGGTTTGAT 58.934 47.619 0.00 0.00 0.00 2.57
1357 1647 2.478894 CGTGACTAGCGTTGGTTTGATT 59.521 45.455 0.00 0.00 0.00 2.57
1358 1648 3.664276 CGTGACTAGCGTTGGTTTGATTG 60.664 47.826 0.00 0.00 0.00 2.67
1359 1649 3.496884 GTGACTAGCGTTGGTTTGATTGA 59.503 43.478 0.00 0.00 0.00 2.57
1360 1650 4.154195 GTGACTAGCGTTGGTTTGATTGAT 59.846 41.667 0.00 0.00 0.00 2.57
1361 1651 4.759693 TGACTAGCGTTGGTTTGATTGATT 59.240 37.500 0.00 0.00 0.00 2.57
1362 1652 5.240623 TGACTAGCGTTGGTTTGATTGATTT 59.759 36.000 0.00 0.00 0.00 2.17
1363 1653 6.084326 ACTAGCGTTGGTTTGATTGATTTT 57.916 33.333 0.00 0.00 0.00 1.82
1364 1654 6.512297 ACTAGCGTTGGTTTGATTGATTTTT 58.488 32.000 0.00 0.00 0.00 1.94
1413 1772 5.231568 GCAAGCTAAAGCATGATTTGATGTC 59.768 40.000 18.87 3.68 41.77 3.06
1535 1894 1.680314 GCAAGGGCTTCTGGAAGGG 60.680 63.158 11.61 0.00 38.80 3.95
1806 2193 0.179100 ATGACAGGCCGACGAAGATG 60.179 55.000 0.00 0.00 0.00 2.90
1810 2197 1.067212 ACAGGCCGACGAAGATGATAC 59.933 52.381 0.00 0.00 0.00 2.24
1852 2247 0.984432 TCCCATGCATGAGAGAGCCA 60.984 55.000 28.31 0.00 0.00 4.75
1950 2367 3.378112 GCAAGCACATTGTTCCAGCTATA 59.622 43.478 0.35 0.00 41.29 1.31
1962 2379 5.132648 TGTTCCAGCTATATTTCACCATCCT 59.867 40.000 0.00 0.00 0.00 3.24
1965 2382 6.950842 TCCAGCTATATTTCACCATCCTATG 58.049 40.000 0.00 0.00 0.00 2.23
2058 2476 7.598189 TGCATTTTTGTGTTTATGATGATGG 57.402 32.000 0.00 0.00 0.00 3.51
2086 2504 5.828299 TCAAAACGAGACCACTTTTGAAT 57.172 34.783 5.63 0.00 38.28 2.57
2131 2550 4.150994 TTCCCAGCGGAACACAAC 57.849 55.556 0.00 0.00 43.57 3.32
2428 2859 5.461526 CATGTAGATGTATGTAGGTGGTCG 58.538 45.833 0.00 0.00 0.00 4.79
2429 2860 4.529897 TGTAGATGTATGTAGGTGGTCGT 58.470 43.478 0.00 0.00 0.00 4.34
2440 2875 1.134340 AGGTGGTCGTACACAGCAAAA 60.134 47.619 12.73 0.00 43.08 2.44
2465 2902 2.440613 TGCGGTGGATGCATGCAT 60.441 55.556 32.66 32.66 37.44 3.96
2493 2938 5.128919 GCATGGTAGAAAATCCACTCTCAT 58.871 41.667 0.00 0.00 36.50 2.90
2494 2939 5.238214 GCATGGTAGAAAATCCACTCTCATC 59.762 44.000 0.00 0.00 36.50 2.92
2675 3153 1.303309 CGGAGAATGTTGATGAGGCC 58.697 55.000 0.00 0.00 0.00 5.19
2708 3186 1.528309 CCTGGAGCAAACCGGTTGT 60.528 57.895 23.08 8.87 39.63 3.32
2720 3198 1.296715 CGGTTGTCCCAGGAAGAGG 59.703 63.158 0.00 0.00 0.00 3.69
2796 3274 6.863645 CGACTATGACTACAATGGTATCCAAG 59.136 42.308 0.00 0.00 36.95 3.61
2830 3317 3.649986 GTACATGCCGATGCCGCC 61.650 66.667 0.00 0.00 36.33 6.13
2865 3352 3.570212 AGGTGGCGCCTCCTGTTT 61.570 61.111 41.49 23.04 46.96 2.83
2918 3405 4.181010 CAGCCGGCCACCAGCTAT 62.181 66.667 26.15 0.00 43.05 2.97
3035 3525 2.749044 CAGCATTCCTGTGCCGCT 60.749 61.111 0.00 0.00 46.19 5.52
3288 4692 4.217118 AGGTCTGTTTTGCTATCTGCTTTG 59.783 41.667 0.00 0.00 43.37 2.77
3313 4717 0.174162 GTTTGGTGATCATGGCTGCC 59.826 55.000 12.87 12.87 0.00 4.85
3324 4732 1.406065 ATGGCTGCCTGCTAGTCGAT 61.406 55.000 21.03 0.00 42.39 3.59
3380 4790 5.391312 ACAAGATTAAAACACAGATGGCC 57.609 39.130 0.00 0.00 0.00 5.36
3398 4808 5.467035 TGGCCAAAGAAAACAGGAATTAG 57.533 39.130 0.61 0.00 0.00 1.73
3440 4850 9.880157 ATTTCATATTGAAGTTTAGCAGCATTT 57.120 25.926 0.00 0.00 37.70 2.32
3494 4904 3.367703 CCACCGTTTATTCTACACGACCT 60.368 47.826 0.00 0.00 35.93 3.85
3513 4923 2.412112 CCGGGAGCTAGCACGTAC 59.588 66.667 18.83 3.89 0.00 3.67
3514 4924 2.024305 CGGGAGCTAGCACGTACG 59.976 66.667 18.83 15.01 0.00 3.67
3588 5000 6.674694 ACTAGTAACTACACCACATCGTAG 57.325 41.667 0.00 0.00 40.77 3.51
3676 5107 2.433868 TTAGGATAAGCGCGTGGATC 57.566 50.000 8.43 7.82 0.00 3.36
4020 5451 1.947456 GTTGTTCACCTGGAAGTGGAC 59.053 52.381 0.00 0.00 45.12 4.02
4060 5491 0.106819 ATACGTCGCCCTCCACTAGT 60.107 55.000 0.00 0.00 0.00 2.57
4336 5767 0.031721 AGAAGAAGTCGTTCGCCGTT 59.968 50.000 0.00 0.00 37.79 4.44
4409 5841 3.699038 ACACAGTTGCACACCAAAGTTAT 59.301 39.130 0.00 0.00 34.68 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.444034 CGACCGGATACCATCATAGACAT 59.556 47.826 9.46 0.00 0.00 3.06
1 2 2.817844 CGACCGGATACCATCATAGACA 59.182 50.000 9.46 0.00 0.00 3.41
2 3 3.079578 TCGACCGGATACCATCATAGAC 58.920 50.000 9.46 0.00 0.00 2.59
3 4 3.079578 GTCGACCGGATACCATCATAGA 58.920 50.000 9.46 0.00 0.00 1.98
4 5 2.159558 CGTCGACCGGATACCATCATAG 60.160 54.545 9.46 0.00 0.00 2.23
5 6 1.808343 CGTCGACCGGATACCATCATA 59.192 52.381 9.46 0.00 0.00 2.15
6 7 0.596577 CGTCGACCGGATACCATCAT 59.403 55.000 9.46 0.00 0.00 2.45
7 8 2.027325 CGTCGACCGGATACCATCA 58.973 57.895 9.46 0.00 0.00 3.07
8 9 4.937781 CGTCGACCGGATACCATC 57.062 61.111 9.46 0.00 0.00 3.51
28 29 4.465512 CGGAACATGTGCGGCAGC 62.466 66.667 1.18 0.31 45.41 5.25
33 34 2.244436 CTTGAGCCGGAACATGTGCG 62.244 60.000 5.05 0.26 41.45 5.34
34 35 1.237285 ACTTGAGCCGGAACATGTGC 61.237 55.000 5.05 0.00 0.00 4.57
35 36 0.798776 GACTTGAGCCGGAACATGTG 59.201 55.000 18.84 8.71 0.00 3.21
36 37 0.321653 GGACTTGAGCCGGAACATGT 60.322 55.000 5.05 12.42 0.00 3.21
37 38 1.026718 GGGACTTGAGCCGGAACATG 61.027 60.000 5.05 9.08 0.00 3.21
38 39 1.299976 GGGACTTGAGCCGGAACAT 59.700 57.895 5.05 0.00 0.00 2.71
39 40 2.111999 CTGGGACTTGAGCCGGAACA 62.112 60.000 5.05 0.02 0.00 3.18
40 41 1.376037 CTGGGACTTGAGCCGGAAC 60.376 63.158 5.05 0.00 0.00 3.62
41 42 2.592993 CCTGGGACTTGAGCCGGAA 61.593 63.158 5.05 0.00 0.00 4.30
42 43 3.003173 CCTGGGACTTGAGCCGGA 61.003 66.667 5.05 0.00 0.00 5.14
43 44 3.316573 GACCTGGGACTTGAGCCGG 62.317 68.421 0.00 0.00 0.00 6.13
44 45 2.266055 GACCTGGGACTTGAGCCG 59.734 66.667 0.00 0.00 0.00 5.52
45 46 2.671682 GGACCTGGGACTTGAGCC 59.328 66.667 0.00 0.00 0.00 4.70
46 47 2.190488 CTGGGACCTGGGACTTGAGC 62.190 65.000 0.00 0.00 0.00 4.26
47 48 0.838122 ACTGGGACCTGGGACTTGAG 60.838 60.000 0.00 0.00 0.00 3.02
48 49 0.401395 AACTGGGACCTGGGACTTGA 60.401 55.000 0.00 0.00 0.00 3.02
49 50 0.036875 GAACTGGGACCTGGGACTTG 59.963 60.000 0.00 0.00 0.00 3.16
50 51 1.134438 GGAACTGGGACCTGGGACTT 61.134 60.000 0.00 0.00 0.00 3.01
51 52 1.539124 GGAACTGGGACCTGGGACT 60.539 63.158 0.00 0.00 0.00 3.85
52 53 2.603652 GGGAACTGGGACCTGGGAC 61.604 68.421 0.00 0.00 0.00 4.46
53 54 2.204090 GGGAACTGGGACCTGGGA 60.204 66.667 0.00 0.00 0.00 4.37
54 55 3.339093 GGGGAACTGGGACCTGGG 61.339 72.222 0.00 0.00 0.00 4.45
55 56 2.204151 AGGGGAACTGGGACCTGG 60.204 66.667 0.00 0.00 30.71 4.45
56 57 3.081554 CAGGGGAACTGGGACCTG 58.918 66.667 0.00 0.00 43.70 4.00
64 65 1.726192 GGGGGTGAAACAGGGGAACT 61.726 60.000 0.00 0.00 39.98 3.01
65 66 1.228769 GGGGGTGAAACAGGGGAAC 60.229 63.158 0.00 0.00 39.98 3.62
66 67 1.701757 TGGGGGTGAAACAGGGGAA 60.702 57.895 0.00 0.00 39.98 3.97
67 68 2.038221 TGGGGGTGAAACAGGGGA 60.038 61.111 0.00 0.00 39.98 4.81
68 69 2.117423 GTGGGGGTGAAACAGGGG 59.883 66.667 0.00 0.00 39.98 4.79
69 70 2.282180 CGTGGGGGTGAAACAGGG 60.282 66.667 0.00 0.00 39.98 4.45
70 71 2.983592 GCGTGGGGGTGAAACAGG 60.984 66.667 0.00 0.00 39.98 4.00
71 72 2.983592 GGCGTGGGGGTGAAACAG 60.984 66.667 0.00 0.00 39.98 3.16
72 73 3.810188 TGGCGTGGGGGTGAAACA 61.810 61.111 0.00 0.00 39.98 2.83
73 74 3.292159 GTGGCGTGGGGGTGAAAC 61.292 66.667 0.00 0.00 0.00 2.78
74 75 3.360423 TTGTGGCGTGGGGGTGAAA 62.360 57.895 0.00 0.00 0.00 2.69
75 76 3.810188 TTGTGGCGTGGGGGTGAA 61.810 61.111 0.00 0.00 0.00 3.18
76 77 4.572571 GTTGTGGCGTGGGGGTGA 62.573 66.667 0.00 0.00 0.00 4.02
77 78 4.579384 AGTTGTGGCGTGGGGGTG 62.579 66.667 0.00 0.00 0.00 4.61
78 79 4.579384 CAGTTGTGGCGTGGGGGT 62.579 66.667 0.00 0.00 0.00 4.95
80 81 3.545124 TAGCAGTTGTGGCGTGGGG 62.545 63.158 0.00 0.00 36.08 4.96
81 82 2.031919 TAGCAGTTGTGGCGTGGG 59.968 61.111 0.00 0.00 36.08 4.61
82 83 0.037697 TACTAGCAGTTGTGGCGTGG 60.038 55.000 0.00 0.00 36.08 4.94
83 84 1.068474 GTACTAGCAGTTGTGGCGTG 58.932 55.000 0.00 0.00 36.08 5.34
84 85 0.037605 GGTACTAGCAGTTGTGGCGT 60.038 55.000 0.00 0.00 36.08 5.68
85 86 0.739813 GGGTACTAGCAGTTGTGGCG 60.740 60.000 0.00 0.00 36.08 5.69
86 87 0.739813 CGGGTACTAGCAGTTGTGGC 60.740 60.000 0.00 0.00 0.00 5.01
87 88 0.892755 TCGGGTACTAGCAGTTGTGG 59.107 55.000 0.00 0.00 0.00 4.17
88 89 2.029290 ACTTCGGGTACTAGCAGTTGTG 60.029 50.000 0.00 0.00 0.00 3.33
89 90 2.245582 ACTTCGGGTACTAGCAGTTGT 58.754 47.619 0.00 0.00 0.00 3.32
90 91 2.993899 CAACTTCGGGTACTAGCAGTTG 59.006 50.000 14.59 14.59 35.38 3.16
91 92 2.028385 CCAACTTCGGGTACTAGCAGTT 60.028 50.000 0.00 0.00 0.00 3.16
92 93 1.549170 CCAACTTCGGGTACTAGCAGT 59.451 52.381 0.00 0.00 0.00 4.40
93 94 1.134788 CCCAACTTCGGGTACTAGCAG 60.135 57.143 0.00 0.00 41.83 4.24
94 95 0.899720 CCCAACTTCGGGTACTAGCA 59.100 55.000 0.00 0.00 41.83 3.49
95 96 3.754766 CCCAACTTCGGGTACTAGC 57.245 57.895 0.00 0.00 41.83 3.42
103 104 2.678336 GCTTCAAGTATCCCAACTTCGG 59.322 50.000 0.00 0.00 37.61 4.30
104 105 3.600388 AGCTTCAAGTATCCCAACTTCG 58.400 45.455 0.00 0.00 37.61 3.79
105 106 3.619038 CGAGCTTCAAGTATCCCAACTTC 59.381 47.826 0.00 0.00 37.61 3.01
106 107 3.600388 CGAGCTTCAAGTATCCCAACTT 58.400 45.455 0.00 0.00 40.33 2.66
107 108 2.678190 GCGAGCTTCAAGTATCCCAACT 60.678 50.000 0.00 0.00 0.00 3.16
108 109 1.666189 GCGAGCTTCAAGTATCCCAAC 59.334 52.381 0.00 0.00 0.00 3.77
109 110 1.277842 TGCGAGCTTCAAGTATCCCAA 59.722 47.619 0.00 0.00 0.00 4.12
110 111 0.901827 TGCGAGCTTCAAGTATCCCA 59.098 50.000 0.00 0.00 0.00 4.37
111 112 1.666189 GTTGCGAGCTTCAAGTATCCC 59.334 52.381 3.02 0.00 0.00 3.85
112 113 1.324736 CGTTGCGAGCTTCAAGTATCC 59.675 52.381 3.02 0.00 0.00 2.59
113 114 1.267087 GCGTTGCGAGCTTCAAGTATC 60.267 52.381 3.02 0.00 0.00 2.24
114 115 0.721718 GCGTTGCGAGCTTCAAGTAT 59.278 50.000 3.02 0.00 0.00 2.12
115 116 0.598942 TGCGTTGCGAGCTTCAAGTA 60.599 50.000 3.02 0.00 35.28 2.24
116 117 1.835483 CTGCGTTGCGAGCTTCAAGT 61.835 55.000 3.02 0.00 35.28 3.16
117 118 1.154525 CTGCGTTGCGAGCTTCAAG 60.155 57.895 3.02 0.00 35.28 3.02
118 119 1.157257 TTCTGCGTTGCGAGCTTCAA 61.157 50.000 0.00 0.00 35.28 2.69
119 120 1.594021 TTCTGCGTTGCGAGCTTCA 60.594 52.632 0.00 0.00 35.28 3.02
120 121 1.154580 GTTCTGCGTTGCGAGCTTC 60.155 57.895 0.00 0.00 35.28 3.86
121 122 2.607892 GGTTCTGCGTTGCGAGCTT 61.608 57.895 0.00 0.00 35.28 3.74
122 123 3.044305 GGTTCTGCGTTGCGAGCT 61.044 61.111 0.00 0.00 35.28 4.09
123 124 4.090057 GGGTTCTGCGTTGCGAGC 62.090 66.667 0.00 0.00 0.00 5.03
124 125 3.423154 GGGGTTCTGCGTTGCGAG 61.423 66.667 0.00 0.00 0.00 5.03
127 128 3.723348 GTCGGGGTTCTGCGTTGC 61.723 66.667 0.00 0.00 0.00 4.17
128 129 3.411351 CGTCGGGGTTCTGCGTTG 61.411 66.667 0.00 0.00 0.00 4.10
129 130 4.675029 CCGTCGGGGTTCTGCGTT 62.675 66.667 2.34 0.00 0.00 4.84
133 134 4.796231 CTCGCCGTCGGGGTTCTG 62.796 72.222 25.67 12.15 38.44 3.02
135 136 3.834799 ATCTCGCCGTCGGGGTTC 61.835 66.667 25.67 2.37 36.68 3.62
136 137 4.143333 CATCTCGCCGTCGGGGTT 62.143 66.667 25.67 11.00 36.68 4.11
138 139 4.271816 CTCATCTCGCCGTCGGGG 62.272 72.222 21.65 21.65 36.68 5.73
139 140 2.119147 CTACTCATCTCGCCGTCGGG 62.119 65.000 14.38 3.27 37.58 5.14
140 141 1.280142 CTACTCATCTCGCCGTCGG 59.720 63.158 6.99 6.99 36.13 4.79
141 142 1.369448 GCTACTCATCTCGCCGTCG 60.369 63.158 0.00 0.00 0.00 5.12
142 143 0.317436 CAGCTACTCATCTCGCCGTC 60.317 60.000 0.00 0.00 0.00 4.79
143 144 1.729470 CCAGCTACTCATCTCGCCGT 61.729 60.000 0.00 0.00 0.00 5.68
144 145 1.007964 CCAGCTACTCATCTCGCCG 60.008 63.158 0.00 0.00 0.00 6.46
145 146 0.249238 CACCAGCTACTCATCTCGCC 60.249 60.000 0.00 0.00 0.00 5.54
146 147 0.741326 TCACCAGCTACTCATCTCGC 59.259 55.000 0.00 0.00 0.00 5.03
147 148 3.565902 TGTATCACCAGCTACTCATCTCG 59.434 47.826 0.00 0.00 0.00 4.04
148 149 5.720371 ATGTATCACCAGCTACTCATCTC 57.280 43.478 0.00 0.00 0.00 2.75
149 150 5.600069 TCAATGTATCACCAGCTACTCATCT 59.400 40.000 0.00 0.00 0.00 2.90
150 151 5.847304 TCAATGTATCACCAGCTACTCATC 58.153 41.667 0.00 0.00 0.00 2.92
151 152 5.876651 TCAATGTATCACCAGCTACTCAT 57.123 39.130 0.00 0.00 0.00 2.90
152 153 5.419542 GTTCAATGTATCACCAGCTACTCA 58.580 41.667 0.00 0.00 0.00 3.41
153 154 4.504461 CGTTCAATGTATCACCAGCTACTC 59.496 45.833 0.00 0.00 0.00 2.59
154 155 4.159693 TCGTTCAATGTATCACCAGCTACT 59.840 41.667 0.00 0.00 0.00 2.57
155 156 4.267928 GTCGTTCAATGTATCACCAGCTAC 59.732 45.833 0.00 0.00 0.00 3.58
156 157 4.081917 TGTCGTTCAATGTATCACCAGCTA 60.082 41.667 0.00 0.00 0.00 3.32
157 158 3.262420 GTCGTTCAATGTATCACCAGCT 58.738 45.455 0.00 0.00 0.00 4.24
158 159 3.000041 TGTCGTTCAATGTATCACCAGC 59.000 45.455 0.00 0.00 0.00 4.85
159 160 5.605564 TTTGTCGTTCAATGTATCACCAG 57.394 39.130 0.00 0.00 35.84 4.00
160 161 6.205658 TCAATTTGTCGTTCAATGTATCACCA 59.794 34.615 0.00 0.00 35.84 4.17
161 162 6.607689 TCAATTTGTCGTTCAATGTATCACC 58.392 36.000 0.00 0.00 35.84 4.02
162 163 7.518161 TCTCAATTTGTCGTTCAATGTATCAC 58.482 34.615 0.00 0.00 35.84 3.06
163 164 7.665561 TCTCAATTTGTCGTTCAATGTATCA 57.334 32.000 0.00 0.00 35.84 2.15
164 165 8.443160 TCTTCTCAATTTGTCGTTCAATGTATC 58.557 33.333 0.00 0.00 35.84 2.24
165 166 8.322906 TCTTCTCAATTTGTCGTTCAATGTAT 57.677 30.769 0.00 0.00 35.84 2.29
166 167 7.722795 TCTTCTCAATTTGTCGTTCAATGTA 57.277 32.000 0.00 0.00 35.84 2.29
167 168 6.618287 TCTTCTCAATTTGTCGTTCAATGT 57.382 33.333 0.00 0.00 35.84 2.71
168 169 6.087291 GCTTCTTCTCAATTTGTCGTTCAATG 59.913 38.462 0.00 0.00 35.84 2.82
169 170 6.145535 GCTTCTTCTCAATTTGTCGTTCAAT 58.854 36.000 0.00 0.00 35.84 2.57
170 171 5.065859 TGCTTCTTCTCAATTTGTCGTTCAA 59.934 36.000 0.00 0.00 0.00 2.69
171 172 4.574421 TGCTTCTTCTCAATTTGTCGTTCA 59.426 37.500 0.00 0.00 0.00 3.18
172 173 5.095691 TGCTTCTTCTCAATTTGTCGTTC 57.904 39.130 0.00 0.00 0.00 3.95
173 174 5.455392 CATGCTTCTTCTCAATTTGTCGTT 58.545 37.500 0.00 0.00 0.00 3.85
174 175 4.083110 CCATGCTTCTTCTCAATTTGTCGT 60.083 41.667 0.00 0.00 0.00 4.34
175 176 4.083110 ACCATGCTTCTTCTCAATTTGTCG 60.083 41.667 0.00 0.00 0.00 4.35
176 177 5.382618 ACCATGCTTCTTCTCAATTTGTC 57.617 39.130 0.00 0.00 0.00 3.18
177 178 4.083110 CGACCATGCTTCTTCTCAATTTGT 60.083 41.667 0.00 0.00 0.00 2.83
178 179 4.409570 CGACCATGCTTCTTCTCAATTTG 58.590 43.478 0.00 0.00 0.00 2.32
179 180 3.441572 CCGACCATGCTTCTTCTCAATTT 59.558 43.478 0.00 0.00 0.00 1.82
180 181 3.012518 CCGACCATGCTTCTTCTCAATT 58.987 45.455 0.00 0.00 0.00 2.32
181 182 2.636830 CCGACCATGCTTCTTCTCAAT 58.363 47.619 0.00 0.00 0.00 2.57
182 183 1.945819 GCCGACCATGCTTCTTCTCAA 60.946 52.381 0.00 0.00 0.00 3.02
183 184 0.391661 GCCGACCATGCTTCTTCTCA 60.392 55.000 0.00 0.00 0.00 3.27
184 185 1.424493 CGCCGACCATGCTTCTTCTC 61.424 60.000 0.00 0.00 0.00 2.87
185 186 1.448540 CGCCGACCATGCTTCTTCT 60.449 57.895 0.00 0.00 0.00 2.85
186 187 3.093278 CGCCGACCATGCTTCTTC 58.907 61.111 0.00 0.00 0.00 2.87
187 188 3.127533 GCGCCGACCATGCTTCTT 61.128 61.111 0.00 0.00 0.00 2.52
188 189 4.393155 TGCGCCGACCATGCTTCT 62.393 61.111 4.18 0.00 0.00 2.85
189 190 4.166011 GTGCGCCGACCATGCTTC 62.166 66.667 4.18 0.00 0.00 3.86
203 204 3.749064 TCTCGAGCGAGTGGGTGC 61.749 66.667 18.17 0.00 42.49 5.01
204 205 2.179517 GTCTCGAGCGAGTGGGTG 59.820 66.667 18.17 0.00 42.49 4.61
205 206 3.063084 GGTCTCGAGCGAGTGGGT 61.063 66.667 18.17 0.00 42.49 4.51
206 207 3.057547 CTGGTCTCGAGCGAGTGGG 62.058 68.421 18.17 5.47 42.49 4.61
207 208 2.487428 CTGGTCTCGAGCGAGTGG 59.513 66.667 18.17 5.18 42.49 4.00
208 209 2.041115 TCCTGGTCTCGAGCGAGTG 61.041 63.158 18.17 8.33 42.49 3.51
209 210 2.041686 GTCCTGGTCTCGAGCGAGT 61.042 63.158 18.17 0.00 42.49 4.18
210 211 1.747367 AGTCCTGGTCTCGAGCGAG 60.747 63.158 13.36 13.36 43.21 5.03
211 212 2.041115 CAGTCCTGGTCTCGAGCGA 61.041 63.158 7.81 0.00 0.00 4.93
212 213 2.487428 CAGTCCTGGTCTCGAGCG 59.513 66.667 7.81 0.00 0.00 5.03
213 214 2.183046 GCAGTCCTGGTCTCGAGC 59.817 66.667 7.81 2.69 0.00 5.03
214 215 2.716017 GGGCAGTCCTGGTCTCGAG 61.716 68.421 5.93 5.93 0.00 4.04
215 216 2.680352 GGGCAGTCCTGGTCTCGA 60.680 66.667 0.00 0.00 0.00 4.04
216 217 2.513026 CTTGGGCAGTCCTGGTCTCG 62.513 65.000 0.00 0.00 36.20 4.04
217 218 1.298014 CTTGGGCAGTCCTGGTCTC 59.702 63.158 0.00 0.00 36.20 3.36
218 219 2.227036 CCTTGGGCAGTCCTGGTCT 61.227 63.158 0.00 0.00 36.20 3.85
219 220 2.352805 CCTTGGGCAGTCCTGGTC 59.647 66.667 0.00 0.00 36.20 4.02
220 221 3.260100 CCCTTGGGCAGTCCTGGT 61.260 66.667 0.00 0.00 36.20 4.00
221 222 4.052518 CCCCTTGGGCAGTCCTGG 62.053 72.222 0.00 0.00 35.35 4.45
238 239 2.537560 CCAACGATGATGGCCGAGC 61.538 63.158 0.00 0.00 0.00 5.03
239 240 3.723172 CCAACGATGATGGCCGAG 58.277 61.111 0.00 0.00 0.00 4.63
244 245 1.717791 ATGCACGCCAACGATGATGG 61.718 55.000 0.00 0.00 43.93 3.51
245 246 0.099259 AATGCACGCCAACGATGATG 59.901 50.000 0.00 0.00 43.93 3.07
246 247 0.810648 AAATGCACGCCAACGATGAT 59.189 45.000 0.00 0.00 43.93 2.45
247 248 0.595588 AAAATGCACGCCAACGATGA 59.404 45.000 0.00 0.00 43.93 2.92
248 249 0.709467 CAAAATGCACGCCAACGATG 59.291 50.000 0.00 0.00 43.93 3.84
249 250 0.313672 ACAAAATGCACGCCAACGAT 59.686 45.000 0.00 0.00 43.93 3.73
250 251 0.593518 CACAAAATGCACGCCAACGA 60.594 50.000 0.00 0.00 43.93 3.85
271 272 4.776322 TGGGCGATGGCGGAGTTG 62.776 66.667 0.00 0.00 41.24 3.16
272 273 4.778143 GTGGGCGATGGCGGAGTT 62.778 66.667 0.00 0.00 41.24 3.01
278 279 4.899239 CTCGAGGTGGGCGATGGC 62.899 72.222 3.91 0.00 37.13 4.40
279 280 4.227134 CCTCGAGGTGGGCGATGG 62.227 72.222 24.04 0.00 37.13 3.51
280 281 3.144120 CTCCTCGAGGTGGGCGATG 62.144 68.421 30.17 2.13 37.13 3.84
281 282 2.835431 CTCCTCGAGGTGGGCGAT 60.835 66.667 30.17 0.00 37.13 4.58
286 287 2.413437 CTATGCGCTCCTCGAGGTGG 62.413 65.000 30.17 23.30 41.67 4.61
287 288 1.007964 CTATGCGCTCCTCGAGGTG 60.008 63.158 30.17 27.85 41.67 4.00
288 289 2.851071 GCTATGCGCTCCTCGAGGT 61.851 63.158 30.17 13.13 41.67 3.85
289 290 2.049618 GCTATGCGCTCCTCGAGG 60.050 66.667 26.32 26.32 41.67 4.63
290 291 2.049618 GGCTATGCGCTCCTCGAG 60.050 66.667 9.73 5.13 41.67 4.04
291 292 2.519541 AGGCTATGCGCTCCTCGA 60.520 61.111 9.73 0.00 41.67 4.04
292 293 2.355599 CAGGCTATGCGCTCCTCG 60.356 66.667 9.73 2.03 39.13 4.63
293 294 2.030262 CCAGGCTATGCGCTCCTC 59.970 66.667 9.73 0.00 39.13 3.71
294 295 2.370445 AACCAGGCTATGCGCTCCT 61.370 57.895 9.73 7.12 39.13 3.69
295 296 2.182842 CAACCAGGCTATGCGCTCC 61.183 63.158 9.73 4.63 39.13 4.70
296 297 2.182842 CCAACCAGGCTATGCGCTC 61.183 63.158 9.73 0.00 39.13 5.03
297 298 2.124570 CCAACCAGGCTATGCGCT 60.125 61.111 9.73 0.00 39.13 5.92
298 299 3.211963 CCCAACCAGGCTATGCGC 61.212 66.667 0.00 0.00 35.39 6.09
299 300 2.516930 CCCCAACCAGGCTATGCG 60.517 66.667 0.00 0.00 35.39 4.73
300 301 2.123726 CCCCCAACCAGGCTATGC 60.124 66.667 0.00 0.00 35.39 3.14
301 302 1.533711 CTCCCCCAACCAGGCTATG 59.466 63.158 0.00 0.00 35.39 2.23
302 303 1.697754 CCTCCCCCAACCAGGCTAT 60.698 63.158 0.00 0.00 35.39 2.97
303 304 2.286121 CCTCCCCCAACCAGGCTA 60.286 66.667 0.00 0.00 35.39 3.93
304 305 4.285790 TCCTCCCCCAACCAGGCT 62.286 66.667 0.00 0.00 35.39 4.58
305 306 4.048470 GTCCTCCCCCAACCAGGC 62.048 72.222 0.00 0.00 35.39 4.85
306 307 3.717294 CGTCCTCCCCCAACCAGG 61.717 72.222 0.00 0.00 37.03 4.45
307 308 2.928396 ACGTCCTCCCCCAACCAG 60.928 66.667 0.00 0.00 0.00 4.00
308 309 3.246112 CACGTCCTCCCCCAACCA 61.246 66.667 0.00 0.00 0.00 3.67
309 310 3.246880 ACACGTCCTCCCCCAACC 61.247 66.667 0.00 0.00 0.00 3.77
310 311 2.346365 GACACGTCCTCCCCCAAC 59.654 66.667 0.00 0.00 0.00 3.77
311 312 3.307906 CGACACGTCCTCCCCCAA 61.308 66.667 0.00 0.00 0.00 4.12
314 315 2.758737 ATCCGACACGTCCTCCCC 60.759 66.667 0.00 0.00 0.00 4.81
315 316 2.494918 CATCCGACACGTCCTCCC 59.505 66.667 0.00 0.00 0.00 4.30
316 317 2.494918 CCATCCGACACGTCCTCC 59.505 66.667 0.00 0.00 0.00 4.30
317 318 2.494918 CCCATCCGACACGTCCTC 59.505 66.667 0.00 0.00 0.00 3.71
318 319 3.075005 CCCCATCCGACACGTCCT 61.075 66.667 0.00 0.00 0.00 3.85
319 320 3.387947 ACCCCATCCGACACGTCC 61.388 66.667 0.00 0.00 0.00 4.79
320 321 2.125673 CACCCCATCCGACACGTC 60.126 66.667 0.00 0.00 0.00 4.34
321 322 3.702048 CCACCCCATCCGACACGT 61.702 66.667 0.00 0.00 0.00 4.49
322 323 3.702048 ACCACCCCATCCGACACG 61.702 66.667 0.00 0.00 0.00 4.49
323 324 2.046314 CACCACCCCATCCGACAC 60.046 66.667 0.00 0.00 0.00 3.67
324 325 4.028490 GCACCACCCCATCCGACA 62.028 66.667 0.00 0.00 0.00 4.35
354 355 4.976925 CTCCTAGCGCCGCCCATG 62.977 72.222 4.98 0.00 0.00 3.66
364 365 2.025441 CTCGAGCGCACTCCTAGC 59.975 66.667 11.47 0.00 40.03 3.42
365 366 2.025441 GCTCGAGCGCACTCCTAG 59.975 66.667 23.61 0.00 40.03 3.02
366 367 3.518998 GGCTCGAGCGCACTCCTA 61.519 66.667 29.81 0.00 43.26 2.94
385 386 1.374758 CCTCAAGGTGAGCGGTGAC 60.375 63.158 0.00 0.00 42.98 3.67
386 387 2.583441 CCCTCAAGGTGAGCGGTGA 61.583 63.158 0.00 0.00 42.98 4.02
387 388 2.046892 CCCTCAAGGTGAGCGGTG 60.047 66.667 0.00 0.00 42.98 4.94
388 389 4.021925 GCCCTCAAGGTGAGCGGT 62.022 66.667 11.82 0.00 42.98 5.68
408 409 2.879462 CCTCCAACTACGCGACGC 60.879 66.667 15.93 10.49 0.00 5.19
409 410 2.202570 CCCTCCAACTACGCGACG 60.203 66.667 15.93 5.32 0.00 5.12
410 411 2.183555 CCCCTCCAACTACGCGAC 59.816 66.667 15.93 0.00 0.00 5.19
411 412 3.766691 GCCCCTCCAACTACGCGA 61.767 66.667 15.93 0.00 0.00 5.87
412 413 4.077184 TGCCCCTCCAACTACGCG 62.077 66.667 3.53 3.53 0.00 6.01
413 414 2.436115 GTGCCCCTCCAACTACGC 60.436 66.667 0.00 0.00 0.00 4.42
414 415 2.125673 CGTGCCCCTCCAACTACG 60.126 66.667 0.00 0.00 0.00 3.51
415 416 1.079336 GACGTGCCCCTCCAACTAC 60.079 63.158 0.00 0.00 0.00 2.73
416 417 1.534476 TGACGTGCCCCTCCAACTA 60.534 57.895 0.00 0.00 0.00 2.24
417 418 2.847234 TGACGTGCCCCTCCAACT 60.847 61.111 0.00 0.00 0.00 3.16
418 419 2.668550 GTGACGTGCCCCTCCAAC 60.669 66.667 0.00 0.00 0.00 3.77
419 420 2.525124 ATGTGACGTGCCCCTCCAA 61.525 57.895 0.00 0.00 0.00 3.53
420 421 2.927856 ATGTGACGTGCCCCTCCA 60.928 61.111 0.00 0.00 0.00 3.86
421 422 2.436646 CATGTGACGTGCCCCTCC 60.437 66.667 0.00 0.00 0.00 4.30
422 423 2.436646 CCATGTGACGTGCCCCTC 60.437 66.667 0.00 0.00 0.00 4.30
423 424 4.033776 CCCATGTGACGTGCCCCT 62.034 66.667 0.00 0.00 0.00 4.79
425 426 4.344865 ACCCCATGTGACGTGCCC 62.345 66.667 0.00 0.00 0.00 5.36
434 435 4.299796 GCCCACACCACCCCATGT 62.300 66.667 0.00 0.00 0.00 3.21
514 515 4.680237 CTCCAACTCGGTGGCGCA 62.680 66.667 10.83 0.00 38.68 6.09
518 519 3.717294 CCCCCTCCAACTCGGTGG 61.717 72.222 0.00 0.00 46.52 4.61
537 538 4.980805 CCACCCACCCGTGACGTG 62.981 72.222 3.64 0.00 35.68 4.49
570 595 0.597637 ACTCTGCACCTTGTCGTTCG 60.598 55.000 0.00 0.00 0.00 3.95
578 603 2.624838 CAATTCAACCACTCTGCACCTT 59.375 45.455 0.00 0.00 0.00 3.50
579 604 2.233271 CAATTCAACCACTCTGCACCT 58.767 47.619 0.00 0.00 0.00 4.00
622 647 0.105039 CCACTATCCCCACTCGCTTC 59.895 60.000 0.00 0.00 0.00 3.86
626 651 2.822399 GCCCACTATCCCCACTCG 59.178 66.667 0.00 0.00 0.00 4.18
636 661 2.363795 CTCCCCTGTCGCCCACTA 60.364 66.667 0.00 0.00 0.00 2.74
645 670 2.681778 CGCAGTCCTCTCCCCTGT 60.682 66.667 0.00 0.00 0.00 4.00
647 672 2.681778 CACGCAGTCCTCTCCCCT 60.682 66.667 0.00 0.00 41.61 4.79
662 687 0.472471 TCCTTTATCCCCATCGCCAC 59.528 55.000 0.00 0.00 0.00 5.01
666 691 2.438021 TCCAACTCCTTTATCCCCATCG 59.562 50.000 0.00 0.00 0.00 3.84
675 700 2.545106 GCGAACGTTTCCAACTCCTTTA 59.455 45.455 0.46 0.00 0.00 1.85
677 702 0.942252 GCGAACGTTTCCAACTCCTT 59.058 50.000 0.46 0.00 0.00 3.36
683 708 0.942410 CTCGGAGCGAACGTTTCCAA 60.942 55.000 15.85 0.00 34.74 3.53
684 709 1.372499 CTCGGAGCGAACGTTTCCA 60.372 57.895 15.85 4.56 34.74 3.53
749 774 4.345257 AGATATCTTACGGATGTTGGCACT 59.655 41.667 0.00 0.00 35.98 4.40
798 826 3.398406 ACACATGTGACACGAAGCAATA 58.602 40.909 31.94 0.00 0.00 1.90
1043 1326 1.066002 CCGCGGTTTTAGGTCGAGATA 59.934 52.381 19.50 0.00 0.00 1.98
1142 1428 2.555547 GGCAGGTTCAGCGCAAACT 61.556 57.895 20.52 8.70 0.00 2.66
1307 1594 1.970640 TGATGATGGATGGGAGTACCG 59.029 52.381 0.00 0.00 44.64 4.02
1308 1595 2.289945 GCTGATGATGGATGGGAGTACC 60.290 54.545 0.00 0.00 40.81 3.34
1310 1597 2.369860 GTGCTGATGATGGATGGGAGTA 59.630 50.000 0.00 0.00 0.00 2.59
1312 1599 1.142262 TGTGCTGATGATGGATGGGAG 59.858 52.381 0.00 0.00 0.00 4.30
1315 1602 1.674441 GTGTGTGCTGATGATGGATGG 59.326 52.381 0.00 0.00 0.00 3.51
1317 1604 1.744798 CGGTGTGTGCTGATGATGGAT 60.745 52.381 0.00 0.00 0.00 3.41
1337 1624 3.496884 TCAATCAAACCAACGCTAGTCAC 59.503 43.478 0.00 0.00 0.00 3.67
1367 1657 4.210955 GCATTCCAAATCAAGCGTCAAAAA 59.789 37.500 0.00 0.00 0.00 1.94
1368 1658 3.740321 GCATTCCAAATCAAGCGTCAAAA 59.260 39.130 0.00 0.00 0.00 2.44
1369 1659 3.243670 TGCATTCCAAATCAAGCGTCAAA 60.244 39.130 0.00 0.00 0.00 2.69
1370 1660 2.295629 TGCATTCCAAATCAAGCGTCAA 59.704 40.909 0.00 0.00 0.00 3.18
1371 1661 1.885233 TGCATTCCAAATCAAGCGTCA 59.115 42.857 0.00 0.00 0.00 4.35
1372 1662 2.634982 TGCATTCCAAATCAAGCGTC 57.365 45.000 0.00 0.00 0.00 5.19
1373 1663 2.950433 CTTGCATTCCAAATCAAGCGT 58.050 42.857 0.00 0.00 31.94 5.07
1413 1772 0.534412 AGTCCCTGAACTCATCTGCG 59.466 55.000 0.00 0.00 0.00 5.18
1629 1994 2.097036 TCGTACATGGTCCAGTAGGTG 58.903 52.381 15.03 5.00 35.89 4.00
1633 1998 2.938451 CGTACTCGTACATGGTCCAGTA 59.062 50.000 7.86 0.00 35.87 2.74
1785 2168 1.079819 CTTCGTCGGCCTGTCATGT 60.080 57.895 0.00 0.00 0.00 3.21
1806 2193 9.804547 GAATTGCTTTTCTCTATGAATCGTATC 57.195 33.333 0.00 0.00 34.24 2.24
1852 2247 8.574737 GGCATCTAATCTCTAAGCAAAATCAAT 58.425 33.333 0.00 0.00 0.00 2.57
1950 2367 6.855763 TGAAAAAGCATAGGATGGTGAAAT 57.144 33.333 0.00 0.00 41.46 2.17
2058 2476 3.203716 AGTGGTCTCGTTTTGAAGTTCC 58.796 45.455 0.00 0.00 0.00 3.62
2105 2524 1.462616 TCCGCTGGGAATCACAATTG 58.537 50.000 3.24 3.24 40.15 2.32
2131 2550 9.912634 AAATATCTTATTGTTTCATTATGGCCG 57.087 29.630 0.00 0.00 0.00 6.13
2224 2645 4.690748 AGACAACTAAATCACCATGTGTCG 59.309 41.667 0.00 0.00 34.79 4.35
2448 2884 2.440613 ATGCATGCATCCACCGCA 60.441 55.556 27.46 10.65 44.94 5.69
2465 2902 2.042297 TGGATTTTCTACCATGCACCCA 59.958 45.455 0.00 0.00 0.00 4.51
2493 2938 5.334337 GCTGCGATGCAACAAATCATATAGA 60.334 40.000 0.00 0.00 38.41 1.98
2494 2939 4.849926 GCTGCGATGCAACAAATCATATAG 59.150 41.667 0.00 0.00 38.41 1.31
2570 3036 0.113190 CCTTCCTTTTCCTGCCACCT 59.887 55.000 0.00 0.00 0.00 4.00
2571 3037 0.900182 CCCTTCCTTTTCCTGCCACC 60.900 60.000 0.00 0.00 0.00 4.61
2572 3038 1.536073 GCCCTTCCTTTTCCTGCCAC 61.536 60.000 0.00 0.00 0.00 5.01
2573 3039 1.228862 GCCCTTCCTTTTCCTGCCA 60.229 57.895 0.00 0.00 0.00 4.92
2604 3082 2.960957 ATCTGGACTTGATCGGCGCG 62.961 60.000 0.00 0.00 0.00 6.86
2614 3092 0.107945 GGCGCTCTGAATCTGGACTT 60.108 55.000 7.64 0.00 0.00 3.01
2663 3141 0.973632 ACACGTAGGCCTCATCAACA 59.026 50.000 9.68 0.00 0.00 3.33
2708 3186 1.920325 CTGTGGCCTCTTCCTGGGA 60.920 63.158 3.32 0.00 0.00 4.37
2720 3198 3.060000 TGCTGCTGCATCTGTGGC 61.060 61.111 14.93 2.16 45.31 5.01
2796 3274 4.944619 TGTACTCATCATCCCAGATGTC 57.055 45.455 4.60 0.00 44.46 3.06
2832 3319 4.647615 CTCATACTCCGGCGGCGG 62.648 72.222 41.57 41.57 0.00 6.13
2839 3326 2.279517 GCGCCACCTCATACTCCG 60.280 66.667 0.00 0.00 0.00 4.63
2865 3352 6.370453 TGTTGTAGCTGTATCCTATACCTGA 58.630 40.000 0.00 0.00 0.00 3.86
2940 3427 1.443407 CGTACCCATCCTGCTCCAG 59.557 63.158 0.00 0.00 0.00 3.86
3035 3525 0.105760 ATGGCAAGTTGGTGGTTCCA 60.106 50.000 4.75 2.55 45.60 3.53
3080 3570 1.668101 GGTCTCACGGCTCTACCTGG 61.668 65.000 0.00 0.00 35.61 4.45
3288 4692 3.194116 AGCCATGATCACCAAACACAATC 59.806 43.478 0.00 0.00 0.00 2.67
3313 4717 2.067013 CATCATGGCATCGACTAGCAG 58.933 52.381 0.00 0.00 0.00 4.24
3324 4732 2.515290 CCTCTGCGCATCATGGCA 60.515 61.111 12.24 0.00 37.63 4.92
3380 4790 7.014230 TCCAAGGTCTAATTCCTGTTTTCTTTG 59.986 37.037 0.00 0.00 35.27 2.77
3513 4923 1.791785 GATCGAGGAGGAGTACGTACG 59.208 57.143 19.49 15.01 0.00 3.67
3514 4924 2.142319 GGATCGAGGAGGAGTACGTAC 58.858 57.143 18.10 18.10 0.00 3.67
3612 5038 8.356533 AGTAAACAAAGAAAACATGCATCAAG 57.643 30.769 0.00 0.00 0.00 3.02
3647 5078 5.989777 ACGCGCTTATCCTAATGAATAAGTT 59.010 36.000 5.73 0.00 0.00 2.66
3648 5079 5.405571 CACGCGCTTATCCTAATGAATAAGT 59.594 40.000 5.73 0.00 0.00 2.24
3649 5080 5.163953 CCACGCGCTTATCCTAATGAATAAG 60.164 44.000 5.73 0.00 0.00 1.73
3653 5084 2.101750 TCCACGCGCTTATCCTAATGAA 59.898 45.455 5.73 0.00 0.00 2.57
3655 5086 2.148916 TCCACGCGCTTATCCTAATG 57.851 50.000 5.73 0.00 0.00 1.90
4042 5473 0.322816 AACTAGTGGAGGGCGACGTA 60.323 55.000 0.00 0.00 0.00 3.57
4336 5767 4.455533 GTGTGCAAGAACATGAAGATGGTA 59.544 41.667 0.00 0.00 33.39 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.