Multiple sequence alignment - TraesCS2B01G481000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G481000 chr2B 100.000 6584 0 0 1 6584 679633169 679626586 0.000000e+00 12159.0
1 TraesCS2B01G481000 chr2B 79.046 797 132 23 2604 3386 80087565 80086790 1.270000e-141 514.0
2 TraesCS2B01G481000 chr2B 86.396 419 45 8 1657 2064 679630920 679630503 1.300000e-121 448.0
3 TraesCS2B01G481000 chr2B 86.396 419 45 8 2250 2667 679631513 679631106 1.300000e-121 448.0
4 TraesCS2B01G481000 chr2B 83.851 161 21 5 4550 4708 80086625 80086468 1.480000e-31 148.0
5 TraesCS2B01G481000 chr2B 96.341 82 3 0 37 118 679066122 679066203 1.150000e-27 135.0
6 TraesCS2B01G481000 chr2B 98.276 58 1 0 4361 4418 790396999 790396942 1.170000e-17 102.0
7 TraesCS2B01G481000 chr2D 96.089 2838 94 7 3039 5875 566759866 566762687 0.000000e+00 4610.0
8 TraesCS2B01G481000 chr2D 94.892 2075 85 13 979 3045 566757523 566759584 0.000000e+00 3225.0
9 TraesCS2B01G481000 chr2D 95.706 326 11 2 656 979 566757163 566757487 7.570000e-144 521.0
10 TraesCS2B01G481000 chr2D 81.288 652 64 30 2054 2667 566757973 566758604 5.970000e-130 475.0
11 TraesCS2B01G481000 chr2D 91.354 347 24 4 3680 4023 561704587 561704930 2.780000e-128 470.0
12 TraesCS2B01G481000 chr2D 86.396 419 45 8 1657 2064 566758789 566759206 1.300000e-121 448.0
13 TraesCS2B01G481000 chr2D 88.705 363 21 11 6230 6583 566774355 566774706 6.100000e-115 425.0
14 TraesCS2B01G481000 chr2D 94.636 261 12 2 5875 6133 566762715 566762975 2.860000e-108 403.0
15 TraesCS2B01G481000 chr2D 83.495 412 35 13 233 642 566756799 566757179 2.920000e-93 353.0
16 TraesCS2B01G481000 chr2D 90.452 199 13 3 1 193 566596111 566596309 2.360000e-64 257.0
17 TraesCS2B01G481000 chr2D 91.772 158 5 1 1 150 566721669 566721826 5.170000e-51 213.0
18 TraesCS2B01G481000 chr2D 76.623 385 62 16 6209 6578 36357554 36357925 3.130000e-43 187.0
19 TraesCS2B01G481000 chr2D 97.561 82 2 0 37 118 566286420 566286501 2.480000e-29 141.0
20 TraesCS2B01G481000 chr2D 96.154 78 2 1 6128 6204 566774288 566774365 6.930000e-25 126.0
21 TraesCS2B01G481000 chr2D 91.429 70 4 2 4361 4430 427329352 427329285 1.950000e-15 95.3
22 TraesCS2B01G481000 chr2D 90.476 42 4 0 444 485 1947372 1947331 1.000000e-03 56.5
23 TraesCS2B01G481000 chr2D 100.000 30 0 0 734 763 566757194 566757223 1.000000e-03 56.5
24 TraesCS2B01G481000 chr2A 89.832 1662 114 38 2054 3680 706578113 706579754 0.000000e+00 2082.0
25 TraesCS2B01G481000 chr2A 91.132 1466 89 19 4419 5875 706579746 706581179 0.000000e+00 1949.0
26 TraesCS2B01G481000 chr2A 87.409 1096 90 22 979 2053 706577660 706578728 0.000000e+00 1216.0
27 TraesCS2B01G481000 chr2A 92.778 360 16 7 6230 6583 706581534 706581889 4.550000e-141 512.0
28 TraesCS2B01G481000 chr2A 94.012 334 12 5 5875 6200 706581207 706581540 3.540000e-137 499.0
29 TraesCS2B01G481000 chr2A 78.880 786 122 27 2618 3385 52608295 52607536 5.930000e-135 492.0
30 TraesCS2B01G481000 chr2A 94.715 246 11 2 731 976 706577379 706577622 1.340000e-101 381.0
31 TraesCS2B01G481000 chr2A 74.880 836 159 45 4527 5330 52607386 52606570 3.800000e-87 333.0
32 TraesCS2B01G481000 chr2A 87.374 198 18 5 235 430 706576987 706577179 3.090000e-53 220.0
33 TraesCS2B01G481000 chr2A 87.013 154 19 1 1 153 706575497 706575650 8.780000e-39 172.0
34 TraesCS2B01G481000 chr2A 95.050 101 5 0 15 115 706526092 706526192 6.830000e-35 159.0
35 TraesCS2B01G481000 chr2A 95.789 95 4 0 24 118 706506352 706506446 3.180000e-33 154.0
36 TraesCS2B01G481000 chr2A 83.607 122 10 5 5494 5607 52606433 52606314 9.030000e-19 106.0
37 TraesCS2B01G481000 chr4B 90.230 1392 104 22 2298 3680 77077788 77076420 0.000000e+00 1788.0
38 TraesCS2B01G481000 chr4B 86.388 933 91 15 4419 5328 77076428 77075509 0.000000e+00 987.0
39 TraesCS2B01G481000 chr4B 89.891 366 30 6 1704 2064 77077787 77077424 1.290000e-126 464.0
40 TraesCS2B01G481000 chr4B 76.098 410 71 19 6199 6583 424829178 424828771 8.720000e-44 189.0
41 TraesCS2B01G481000 chr4B 98.276 58 1 0 4361 4418 573070066 573070009 1.170000e-17 102.0
42 TraesCS2B01G481000 chr4B 88.372 43 5 0 443 485 403622947 403622989 1.200000e-02 52.8
43 TraesCS2B01G481000 chr4B 94.118 34 2 0 452 485 598601853 598601886 1.200000e-02 52.8
44 TraesCS2B01G481000 chr3B 89.032 1395 119 26 2298 3680 750370668 750372040 0.000000e+00 1698.0
45 TraesCS2B01G481000 chr3B 89.595 913 66 19 2773 3674 750372648 750373542 0.000000e+00 1133.0
46 TraesCS2B01G481000 chr3B 90.652 353 28 4 1704 2053 750370669 750371019 1.290000e-126 464.0
47 TraesCS2B01G481000 chr3B 88.562 306 28 3 4021 4320 607819793 607819489 1.350000e-96 364.0
48 TraesCS2B01G481000 chr3B 85.818 275 24 9 4419 4688 750372032 750372296 1.810000e-70 278.0
49 TraesCS2B01G481000 chr3B 86.194 268 24 7 4425 4688 750373546 750373804 1.810000e-70 278.0
50 TraesCS2B01G481000 chr3B 96.667 60 2 0 4361 4420 556522285 556522344 4.200000e-17 100.0
51 TraesCS2B01G481000 chr3B 95.161 62 3 0 4361 4422 93245472 93245411 1.510000e-16 99.0
52 TraesCS2B01G481000 chr3B 100.000 28 0 0 458 485 644366922 644366895 1.200000e-02 52.8
53 TraesCS2B01G481000 chr1A 92.241 348 22 5 3679 4023 451357163 451356818 7.670000e-134 488.0
54 TraesCS2B01G481000 chr1A 91.329 346 27 3 3681 4023 21762947 21762602 2.780000e-128 470.0
55 TraesCS2B01G481000 chr1A 85.821 134 10 2 1415 1539 384297758 384297625 4.140000e-27 134.0
56 TraesCS2B01G481000 chr1A 93.939 66 3 1 4361 4426 21762604 21762540 1.510000e-16 99.0
57 TraesCS2B01G481000 chr3D 91.884 345 25 2 3681 4023 558666248 558665905 4.620000e-131 479.0
58 TraesCS2B01G481000 chr3D 86.149 296 36 5 1251 1544 432506454 432506162 1.380000e-81 315.0
59 TraesCS2B01G481000 chr3D 96.875 32 0 1 458 488 324781710 324781741 1.200000e-02 52.8
60 TraesCS2B01G481000 chr7D 91.354 347 25 3 3680 4023 146519383 146519039 2.780000e-128 470.0
61 TraesCS2B01G481000 chr7D 76.087 368 58 16 6189 6538 163048217 163047862 1.470000e-36 165.0
62 TraesCS2B01G481000 chr7D 96.667 60 2 0 4361 4420 601165505 601165564 4.200000e-17 100.0
63 TraesCS2B01G481000 chr6D 91.354 347 25 3 3680 4023 315573248 315573592 2.780000e-128 470.0
64 TraesCS2B01G481000 chr6D 91.354 347 23 3 3680 4023 443720528 443720870 1.000000e-127 468.0
65 TraesCS2B01G481000 chr5D 91.354 347 25 3 3680 4023 115965758 115965414 2.780000e-128 470.0
66 TraesCS2B01G481000 chr5D 85.496 262 21 9 6338 6583 494074606 494074346 2.360000e-64 257.0
67 TraesCS2B01G481000 chr5D 85.271 258 16 10 6338 6583 493842454 493842701 5.100000e-61 246.0
68 TraesCS2B01G481000 chr5D 98.276 58 1 0 4361 4418 491789428 491789371 1.170000e-17 102.0
69 TraesCS2B01G481000 chr5D 100.000 30 0 0 205 234 334244225 334244196 1.000000e-03 56.5
70 TraesCS2B01G481000 chr5D 83.333 60 6 4 180 238 363841483 363841539 1.200000e-02 52.8
71 TraesCS2B01G481000 chr4D 84.211 399 46 14 1663 2053 327909977 327909588 8.060000e-99 372.0
72 TraesCS2B01G481000 chr4D 76.329 414 68 22 6197 6583 342898243 342897833 1.870000e-45 195.0
73 TraesCS2B01G481000 chr4D 100.000 30 0 0 205 234 45710272 45710301 1.000000e-03 56.5
74 TraesCS2B01G481000 chr4D 100.000 30 0 0 205 234 325358787 325358816 1.000000e-03 56.5
75 TraesCS2B01G481000 chr6A 82.544 401 55 11 1663 2055 528953502 528953109 8.180000e-89 339.0
76 TraesCS2B01G481000 chr4A 82.456 399 54 13 1663 2053 712214347 712213957 1.060000e-87 335.0
77 TraesCS2B01G481000 chr4A 90.698 43 4 0 192 234 93890478 93890520 2.560000e-04 58.4
78 TraesCS2B01G481000 chr4A 100.000 30 0 0 205 234 145883977 145883948 1.000000e-03 56.5
79 TraesCS2B01G481000 chr5A 77.827 451 55 26 6173 6583 617100110 617099665 3.070000e-58 237.0
80 TraesCS2B01G481000 chr5A 85.227 88 10 3 443 528 361911563 361911649 3.270000e-13 87.9
81 TraesCS2B01G481000 chrUn 91.946 149 12 0 1391 1539 341211967 341212115 6.690000e-50 209.0
82 TraesCS2B01G481000 chr6B 76.733 404 71 11 6190 6578 67545112 67545507 3.110000e-48 204.0
83 TraesCS2B01G481000 chr6B 92.308 143 11 0 1391 1533 197739748 197739890 3.110000e-48 204.0
84 TraesCS2B01G481000 chr6B 85.938 192 21 4 1251 1442 45709342 45709527 4.030000e-47 200.0
85 TraesCS2B01G481000 chr7B 93.182 44 3 0 194 237 479202240 479202283 1.530000e-06 65.8
86 TraesCS2B01G481000 chr7B 88.372 43 5 0 443 485 65814983 65815025 1.200000e-02 52.8
87 TraesCS2B01G481000 chr7B 88.372 43 5 0 443 485 648998008 648998050 1.200000e-02 52.8
88 TraesCS2B01G481000 chr3A 90.000 40 4 0 193 232 22812765 22812804 1.200000e-02 52.8
89 TraesCS2B01G481000 chr3A 100.000 28 0 0 205 232 670654612 670654585 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G481000 chr2B 679626586 679633169 6583 True 4351.666667 12159 90.930667 1 6584 3 chr2B.!!$R3 6583
1 TraesCS2B01G481000 chr2B 80086468 80087565 1097 True 331.000000 514 81.448500 2604 4708 2 chr2B.!!$R2 2104
2 TraesCS2B01G481000 chr2D 566756799 566762975 6176 False 1261.437500 4610 91.562750 233 6133 8 chr2D.!!$F6 5900
3 TraesCS2B01G481000 chr2A 706575497 706581889 6392 False 878.875000 2082 90.533125 1 6583 8 chr2A.!!$F3 6582
4 TraesCS2B01G481000 chr2A 52606314 52608295 1981 True 310.333333 492 79.122333 2618 5607 3 chr2A.!!$R1 2989
5 TraesCS2B01G481000 chr4B 77075509 77077788 2279 True 1079.666667 1788 88.836333 1704 5328 3 chr4B.!!$R3 3624
6 TraesCS2B01G481000 chr3B 750370668 750373804 3136 False 770.200000 1698 88.258200 1704 4688 5 chr3B.!!$F2 2984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 2138 0.112412 ACGGCCCAAGTTCCAAATCT 59.888 50.000 0.00 0.00 0.00 2.40 F
1901 3424 0.108585 GTGTTCCAGGTGGCTCTGAA 59.891 55.000 9.40 0.00 36.93 3.02 F
2440 3964 1.271379 GCACAACTAAGCCTGAAGGGA 60.271 52.381 0.00 0.00 37.23 4.20 F
2960 6008 1.727511 TATACGTGAAGGCGACGGGG 61.728 60.000 0.00 0.00 41.21 5.73 F
4098 7441 1.102809 TGAGTTGGCTTGTGCACTGG 61.103 55.000 19.41 11.53 41.91 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2065 3589 2.040145 TCAAGCATGTGATCCAGGAACA 59.960 45.455 0.00 0.00 0.00 3.18 R
3872 7215 0.687920 TGACATTACTGTTCGGCCCA 59.312 50.000 0.00 0.00 35.14 5.36 R
4019 7362 0.323629 CAGTCCGAACAGGCCCTTAA 59.676 55.000 0.00 0.00 40.77 1.85 R
4146 7489 1.220749 GTTGTCTCGCTATGGGCCA 59.779 57.895 9.61 9.61 37.74 5.36 R
5605 9050 0.031994 GGCGTGCATCCAGTTTTTGT 59.968 50.000 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.475909 ATGTAATCATGGACGTAGATACGGT 59.524 40.000 16.06 2.82 42.11 4.83
76 77 0.179132 TACGCGTACGCATCATTGGT 60.179 50.000 36.44 25.85 45.53 3.67
87 88 2.295349 GCATCATTGGTTATCCTGCAGG 59.705 50.000 27.87 27.87 32.45 4.85
95 96 2.017049 GTTATCCTGCAGGTTCGCATT 58.983 47.619 31.58 11.55 42.06 3.56
96 97 3.202906 GTTATCCTGCAGGTTCGCATTA 58.797 45.455 31.58 10.93 42.06 1.90
112 113 2.457743 ATTACTTGCACCCGTCGCCA 62.458 55.000 0.00 0.00 0.00 5.69
120 121 3.202001 CCCGTCGCCATCGCAATT 61.202 61.111 0.00 0.00 35.26 2.32
126 127 1.013596 TCGCCATCGCAATTACTTGG 58.986 50.000 0.00 0.00 35.26 3.61
128 129 1.102978 GCCATCGCAATTACTTGGGT 58.897 50.000 9.26 0.00 43.69 4.51
139 140 8.794553 TCGCAATTACTTGGGTTTCTATTTTTA 58.205 29.630 9.26 0.00 43.69 1.52
147 148 9.758651 ACTTGGGTTTCTATTTTTAATCAACAC 57.241 29.630 0.00 0.00 0.00 3.32
148 149 9.757227 CTTGGGTTTCTATTTTTAATCAACACA 57.243 29.630 0.00 0.00 0.00 3.72
167 1474 3.555956 CACATATACTCAGAAACGGTGGC 59.444 47.826 0.00 0.00 0.00 5.01
184 1491 5.047660 ACGGTGGCATTTTTATTAGAAAGCA 60.048 36.000 0.00 0.00 0.00 3.91
185 1492 5.866633 CGGTGGCATTTTTATTAGAAAGCAA 59.133 36.000 0.00 0.00 0.00 3.91
186 1493 6.183360 CGGTGGCATTTTTATTAGAAAGCAAC 60.183 38.462 0.00 0.00 0.00 4.17
187 1494 6.183360 GGTGGCATTTTTATTAGAAAGCAACG 60.183 38.462 0.00 0.00 0.00 4.10
188 1495 5.347364 TGGCATTTTTATTAGAAAGCAACGC 59.653 36.000 0.00 0.00 0.00 4.84
189 1496 5.347364 GGCATTTTTATTAGAAAGCAACGCA 59.653 36.000 0.00 0.00 0.00 5.24
190 1497 6.128688 GGCATTTTTATTAGAAAGCAACGCAA 60.129 34.615 0.00 0.00 0.00 4.85
191 1498 7.412891 GGCATTTTTATTAGAAAGCAACGCAAT 60.413 33.333 0.00 0.00 0.00 3.56
192 1499 7.956943 GCATTTTTATTAGAAAGCAACGCAATT 59.043 29.630 0.00 0.00 0.00 2.32
195 1502 8.455598 TTTTATTAGAAAGCAACGCAATTACC 57.544 30.769 0.00 0.00 0.00 2.85
196 1503 5.637006 ATTAGAAAGCAACGCAATTACCA 57.363 34.783 0.00 0.00 0.00 3.25
197 1504 3.282831 AGAAAGCAACGCAATTACCAC 57.717 42.857 0.00 0.00 0.00 4.16
198 1505 2.030274 AGAAAGCAACGCAATTACCACC 60.030 45.455 0.00 0.00 0.00 4.61
199 1506 1.616159 AAGCAACGCAATTACCACCT 58.384 45.000 0.00 0.00 0.00 4.00
200 1507 0.881118 AGCAACGCAATTACCACCTG 59.119 50.000 0.00 0.00 0.00 4.00
201 1508 0.596082 GCAACGCAATTACCACCTGT 59.404 50.000 0.00 0.00 0.00 4.00
202 1509 1.665735 GCAACGCAATTACCACCTGTG 60.666 52.381 0.00 0.00 0.00 3.66
211 1518 2.115910 CCACCTGTGGCATGTGGT 59.884 61.111 19.66 12.55 42.45 4.16
212 1519 1.531365 CCACCTGTGGCATGTGGTT 60.531 57.895 19.66 1.15 42.45 3.67
213 1520 0.251121 CCACCTGTGGCATGTGGTTA 60.251 55.000 19.66 0.00 42.45 2.85
214 1521 1.167851 CACCTGTGGCATGTGGTTAG 58.832 55.000 6.34 0.00 0.00 2.34
215 1522 0.609131 ACCTGTGGCATGTGGTTAGC 60.609 55.000 0.00 0.00 0.00 3.09
216 1523 0.608856 CCTGTGGCATGTGGTTAGCA 60.609 55.000 0.00 0.00 0.00 3.49
217 1524 1.246649 CTGTGGCATGTGGTTAGCAA 58.753 50.000 0.00 0.00 0.00 3.91
218 1525 1.612950 CTGTGGCATGTGGTTAGCAAA 59.387 47.619 0.00 0.00 0.00 3.68
219 1526 1.339610 TGTGGCATGTGGTTAGCAAAC 59.660 47.619 0.00 0.00 34.66 2.93
220 1527 1.613437 GTGGCATGTGGTTAGCAAACT 59.387 47.619 0.00 0.00 35.81 2.66
221 1528 1.885887 TGGCATGTGGTTAGCAAACTC 59.114 47.619 0.00 0.00 35.81 3.01
222 1529 1.885887 GGCATGTGGTTAGCAAACTCA 59.114 47.619 0.00 0.00 35.81 3.41
223 1530 2.295909 GGCATGTGGTTAGCAAACTCAA 59.704 45.455 0.00 0.00 35.81 3.02
224 1531 3.243704 GGCATGTGGTTAGCAAACTCAAA 60.244 43.478 0.00 0.00 35.81 2.69
225 1532 4.367450 GCATGTGGTTAGCAAACTCAAAA 58.633 39.130 0.00 0.00 35.81 2.44
226 1533 4.990426 GCATGTGGTTAGCAAACTCAAAAT 59.010 37.500 0.00 0.00 35.81 1.82
227 1534 5.466393 GCATGTGGTTAGCAAACTCAAAATT 59.534 36.000 0.00 0.00 35.81 1.82
228 1535 6.346838 GCATGTGGTTAGCAAACTCAAAATTC 60.347 38.462 0.00 0.00 35.81 2.17
229 1536 6.214191 TGTGGTTAGCAAACTCAAAATTCA 57.786 33.333 0.00 0.00 35.81 2.57
230 1537 6.039616 TGTGGTTAGCAAACTCAAAATTCAC 58.960 36.000 0.00 0.00 35.81 3.18
231 1538 6.039616 GTGGTTAGCAAACTCAAAATTCACA 58.960 36.000 0.00 0.00 35.81 3.58
247 1554 6.500684 AATTCACATAGAAAGCGACACAAT 57.499 33.333 0.00 0.00 40.22 2.71
367 1675 0.756294 TTGAGGGTGAGAAAGCGACA 59.244 50.000 0.00 0.00 0.00 4.35
454 1765 8.650143 ACTACACCCATCTCAAAATAAATGTT 57.350 30.769 0.00 0.00 0.00 2.71
503 1814 8.166706 ACAAAGTTATATAAAAGTTGAGACGCG 58.833 33.333 3.53 3.53 0.00 6.01
511 1822 5.412526 AAAAGTTGAGACGCGTATTTTGA 57.587 34.783 13.97 0.00 0.00 2.69
512 1823 5.412526 AAAGTTGAGACGCGTATTTTGAA 57.587 34.783 13.97 0.00 0.00 2.69
519 1830 4.250464 AGACGCGTATTTTGAAATGGAGA 58.750 39.130 13.97 0.00 0.00 3.71
522 1833 4.330074 ACGCGTATTTTGAAATGGAGAGAG 59.670 41.667 11.67 0.00 0.00 3.20
534 1845 9.886132 TTGAAATGGAGAGAGTATAACTTAACC 57.114 33.333 0.00 0.00 0.00 2.85
552 1863 9.816787 AACTTAACCTATTGTCATCCCTAAAAA 57.183 29.630 0.00 0.00 0.00 1.94
590 1901 5.512942 TCCAAAAGAGAGAGAGAGAGAGA 57.487 43.478 0.00 0.00 0.00 3.10
642 2058 6.216456 AGAGAGAAAATGTCTATCCCCAACTT 59.784 38.462 0.00 0.00 44.37 2.66
643 2059 6.794534 AGAGAAAATGTCTATCCCCAACTTT 58.205 36.000 0.00 0.00 36.41 2.66
644 2060 7.241628 AGAGAAAATGTCTATCCCCAACTTTT 58.758 34.615 0.00 0.00 36.41 2.27
645 2061 7.730332 AGAGAAAATGTCTATCCCCAACTTTTT 59.270 33.333 0.00 0.00 36.41 1.94
667 2083 5.382664 TTTTGGAGGTAATGTCTATCCCC 57.617 43.478 0.00 0.00 0.00 4.81
668 2084 3.717507 TGGAGGTAATGTCTATCCCCA 57.282 47.619 0.00 0.00 0.00 4.96
669 2085 4.015617 TGGAGGTAATGTCTATCCCCAA 57.984 45.455 0.00 0.00 0.00 4.12
670 2086 3.714798 TGGAGGTAATGTCTATCCCCAAC 59.285 47.826 0.00 0.00 0.00 3.77
671 2087 3.974642 GGAGGTAATGTCTATCCCCAACT 59.025 47.826 0.00 0.00 0.00 3.16
674 2090 3.458487 GGTAATGTCTATCCCCAACTGGT 59.542 47.826 0.00 0.00 0.00 4.00
692 2108 3.650647 TCCATTTGTCCAGGACAGC 57.349 52.632 21.87 0.00 43.69 4.40
694 2110 0.606401 CCATTTGTCCAGGACAGCGT 60.606 55.000 21.87 9.66 43.69 5.07
695 2111 0.518636 CATTTGTCCAGGACAGCGTG 59.481 55.000 21.87 16.96 43.69 5.34
696 2112 0.396435 ATTTGTCCAGGACAGCGTGA 59.604 50.000 21.87 4.53 43.69 4.35
697 2113 0.531974 TTTGTCCAGGACAGCGTGAC 60.532 55.000 21.87 0.00 43.69 3.67
698 2114 2.048127 GTCCAGGACAGCGTGACC 60.048 66.667 15.43 0.00 32.09 4.02
699 2115 3.311110 TCCAGGACAGCGTGACCC 61.311 66.667 0.00 0.00 32.57 4.46
700 2116 3.625897 CCAGGACAGCGTGACCCA 61.626 66.667 3.72 0.00 32.57 4.51
701 2117 2.425592 CAGGACAGCGTGACCCAA 59.574 61.111 3.72 0.00 32.57 4.12
702 2118 1.961277 CAGGACAGCGTGACCCAAC 60.961 63.158 3.72 0.00 32.57 3.77
703 2119 2.110213 GGACAGCGTGACCCAACA 59.890 61.111 0.00 0.00 0.00 3.33
704 2120 2.251642 GGACAGCGTGACCCAACAC 61.252 63.158 0.00 0.00 37.42 3.32
710 2126 4.572571 GTGACCCAACACGGCCCA 62.573 66.667 0.00 0.00 0.00 5.36
711 2127 3.810188 TGACCCAACACGGCCCAA 61.810 61.111 0.00 0.00 0.00 4.12
712 2128 2.983592 GACCCAACACGGCCCAAG 60.984 66.667 0.00 0.00 0.00 3.61
713 2129 3.785122 GACCCAACACGGCCCAAGT 62.785 63.158 0.00 0.00 0.00 3.16
714 2130 2.520741 CCCAACACGGCCCAAGTT 60.521 61.111 0.00 0.00 0.00 2.66
715 2131 2.561037 CCCAACACGGCCCAAGTTC 61.561 63.158 0.00 0.00 0.00 3.01
716 2132 2.561037 CCAACACGGCCCAAGTTCC 61.561 63.158 0.00 0.00 0.00 3.62
717 2133 1.826054 CAACACGGCCCAAGTTCCA 60.826 57.895 0.00 0.00 0.00 3.53
718 2134 1.076632 AACACGGCCCAAGTTCCAA 60.077 52.632 0.00 0.00 0.00 3.53
719 2135 0.684805 AACACGGCCCAAGTTCCAAA 60.685 50.000 0.00 0.00 0.00 3.28
720 2136 0.469144 ACACGGCCCAAGTTCCAAAT 60.469 50.000 0.00 0.00 0.00 2.32
721 2137 0.243636 CACGGCCCAAGTTCCAAATC 59.756 55.000 0.00 0.00 0.00 2.17
722 2138 0.112412 ACGGCCCAAGTTCCAAATCT 59.888 50.000 0.00 0.00 0.00 2.40
723 2139 0.811281 CGGCCCAAGTTCCAAATCTC 59.189 55.000 0.00 0.00 0.00 2.75
724 2140 1.186200 GGCCCAAGTTCCAAATCTCC 58.814 55.000 0.00 0.00 0.00 3.71
725 2141 0.811281 GCCCAAGTTCCAAATCTCCG 59.189 55.000 0.00 0.00 0.00 4.63
726 2142 0.811281 CCCAAGTTCCAAATCTCCGC 59.189 55.000 0.00 0.00 0.00 5.54
727 2143 1.614317 CCCAAGTTCCAAATCTCCGCT 60.614 52.381 0.00 0.00 0.00 5.52
728 2144 1.740025 CCAAGTTCCAAATCTCCGCTC 59.260 52.381 0.00 0.00 0.00 5.03
729 2145 2.426522 CAAGTTCCAAATCTCCGCTCA 58.573 47.619 0.00 0.00 0.00 4.26
876 2341 4.509737 GCTGACCCTACGCCGACC 62.510 72.222 0.00 0.00 0.00 4.79
979 2444 2.833227 CTCGAACCCAACCCCACA 59.167 61.111 0.00 0.00 0.00 4.17
982 2447 2.596338 GAACCCAACCCCACACCG 60.596 66.667 0.00 0.00 0.00 4.94
1144 2645 4.421479 CGCTTCGCCTGAGGTCGT 62.421 66.667 13.39 0.00 0.00 4.34
1160 2661 3.127533 GTCCGTCATGGCTGCCAC 61.128 66.667 25.99 10.81 35.80 5.01
1161 2662 3.321648 TCCGTCATGGCTGCCACT 61.322 61.111 25.99 10.66 35.80 4.00
1222 2723 3.648339 CCACAGGTGGTTTGATTTCTG 57.352 47.619 10.34 0.00 45.53 3.02
1224 2725 1.608590 ACAGGTGGTTTGATTTCTGCG 59.391 47.619 0.00 0.00 0.00 5.18
1259 2760 2.664916 GCTTCGTGCATGTGATTTGTT 58.335 42.857 5.68 0.00 42.31 2.83
1263 2764 3.669536 TCGTGCATGTGATTTGTTCCTA 58.330 40.909 5.68 0.00 0.00 2.94
1270 2771 7.433131 GTGCATGTGATTTGTTCCTATGTTATG 59.567 37.037 0.00 0.00 0.00 1.90
1273 2774 9.888878 CATGTGATTTGTTCCTATGTTATGATC 57.111 33.333 0.00 0.00 0.00 2.92
1274 2775 9.631257 ATGTGATTTGTTCCTATGTTATGATCA 57.369 29.630 0.00 0.00 0.00 2.92
1275 2776 9.631257 TGTGATTTGTTCCTATGTTATGATCAT 57.369 29.630 13.81 13.81 0.00 2.45
1277 2778 9.288576 TGATTTGTTCCTATGTTATGATCATCC 57.711 33.333 12.53 4.91 0.00 3.51
1284 2785 7.445121 TCCTATGTTATGATCATCCAAGTCAC 58.555 38.462 12.53 0.10 0.00 3.67
1300 2801 1.261619 GTCACCGTTGTTCAGCTTCTG 59.738 52.381 0.00 0.00 0.00 3.02
1359 2863 1.614241 CGTCTAGGTTGGGGGAGGTG 61.614 65.000 0.00 0.00 0.00 4.00
1485 2989 2.367567 TGTGAGTGTGGTTTACTCCTCC 59.632 50.000 0.00 0.00 43.00 4.30
1504 3008 4.499183 CTCCTGTCAGTAGTTGTGGATTC 58.501 47.826 0.00 0.00 0.00 2.52
1514 3018 7.174946 TCAGTAGTTGTGGATTCAGGATTTTTC 59.825 37.037 0.00 0.00 0.00 2.29
1515 3019 5.376854 AGTTGTGGATTCAGGATTTTTCG 57.623 39.130 0.00 0.00 0.00 3.46
1547 3058 6.350629 ACATCTTCCATTTTTCCAAAGAGG 57.649 37.500 0.00 0.00 34.79 3.69
1550 3061 3.628832 TCCATTTTTCCAAAGAGGGGT 57.371 42.857 0.00 0.00 38.24 4.95
1552 3063 4.302930 TCCATTTTTCCAAAGAGGGGTTT 58.697 39.130 0.00 0.00 38.24 3.27
1557 3068 3.603965 TTCCAAAGAGGGGTTTGCTAA 57.396 42.857 0.00 0.00 36.29 3.09
1558 3069 3.603965 TCCAAAGAGGGGTTTGCTAAA 57.396 42.857 0.00 0.00 36.29 1.85
1559 3070 3.917300 TCCAAAGAGGGGTTTGCTAAAA 58.083 40.909 0.00 0.00 36.29 1.52
1560 3071 4.290942 TCCAAAGAGGGGTTTGCTAAAAA 58.709 39.130 0.00 0.00 36.29 1.94
1686 3201 3.900966 ATACCTTAACTCGAACCCACC 57.099 47.619 0.00 0.00 0.00 4.61
1748 3267 2.989166 GTGTTGAGCAAAGCCTTTATGC 59.011 45.455 0.00 0.00 40.34 3.14
1813 3336 8.525290 ACAATCCAGTTATTATTGGGAGAAAG 57.475 34.615 0.00 0.00 35.40 2.62
1814 3337 8.116026 ACAATCCAGTTATTATTGGGAGAAAGT 58.884 33.333 0.00 0.00 35.40 2.66
1815 3338 8.408601 CAATCCAGTTATTATTGGGAGAAAGTG 58.591 37.037 0.00 0.00 35.13 3.16
1816 3339 7.265599 TCCAGTTATTATTGGGAGAAAGTGA 57.734 36.000 0.00 0.00 35.13 3.41
1901 3424 0.108585 GTGTTCCAGGTGGCTCTGAA 59.891 55.000 9.40 0.00 36.93 3.02
1912 3435 4.721776 AGGTGGCTCTGAACAATTAGGATA 59.278 41.667 0.00 0.00 0.00 2.59
1919 3442 7.503902 GGCTCTGAACAATTAGGATAGGAATTT 59.496 37.037 0.00 0.00 0.00 1.82
2111 3635 6.957631 TGTGATTATGGTTTACTCCTCATGT 58.042 36.000 0.00 0.00 0.00 3.21
2117 3641 6.814954 ATGGTTTACTCCTCATGTCAGTAT 57.185 37.500 0.00 0.00 0.00 2.12
2127 3651 5.882000 TCCTCATGTCAGTATTTGTGGATTG 59.118 40.000 0.00 0.00 29.42 2.67
2278 3802 6.072119 GGAACAAAATCTTAACTCGAACCCAT 60.072 38.462 0.00 0.00 0.00 4.00
2346 3870 6.767524 TTGTGTTGGTAAAAGCCTATATGG 57.232 37.500 0.00 0.00 39.35 2.74
2407 3931 5.829924 AGTGCAATCCTGTTATTATTGGGAG 59.170 40.000 0.00 0.00 32.44 4.30
2440 3964 1.271379 GCACAACTAAGCCTGAAGGGA 60.271 52.381 0.00 0.00 37.23 4.20
2568 4092 5.527951 TGTGTTCCATGCAAAGATTGTTAC 58.472 37.500 0.00 0.00 0.00 2.50
2747 4271 5.652994 AGCAAAAACCAACACAAGTAGAA 57.347 34.783 0.00 0.00 0.00 2.10
2845 5880 2.301346 CTGCTTGACAGTGGAAGGTTT 58.699 47.619 0.00 0.00 41.86 3.27
2960 6008 1.727511 TATACGTGAAGGCGACGGGG 61.728 60.000 0.00 0.00 41.21 5.73
3033 6083 6.654793 TTGGAACGGTGATTTTTCTTTTTG 57.345 33.333 0.00 0.00 0.00 2.44
3506 6848 7.739498 TTGTCTGGTTCTTAACTTGGATAAC 57.261 36.000 0.00 0.00 0.00 1.89
3512 6854 5.702209 GGTTCTTAACTTGGATAACGACCAA 59.298 40.000 0.00 0.00 43.84 3.67
3569 6911 5.465532 CATCTCATGCTATGGTAGACTGT 57.534 43.478 0.00 0.00 0.00 3.55
3694 7037 7.878621 TGAAGACTTGGGGAGAATATCATAT 57.121 36.000 0.00 0.00 0.00 1.78
3815 7158 8.680903 TGATGTTTTATTGCCACACAAAATTTT 58.319 25.926 0.00 0.00 42.86 1.82
3872 7215 7.277539 TGAAAAAGACAAAATCAGCGTTGAATT 59.722 29.630 5.91 0.50 36.78 2.17
3874 7217 4.549458 AGACAAAATCAGCGTTGAATTGG 58.451 39.130 24.44 16.08 37.98 3.16
3915 7258 7.669722 TCACTATTTAGGGCTGAATTTGTCTTT 59.330 33.333 0.00 0.00 0.00 2.52
3976 7319 2.106477 TGCGTGGCAATAGAACATCA 57.894 45.000 0.00 0.00 34.76 3.07
3985 7328 6.017605 GTGGCAATAGAACATCACCATCTTAG 60.018 42.308 0.00 0.00 0.00 2.18
4095 7438 2.397549 GAATTGAGTTGGCTTGTGCAC 58.602 47.619 10.75 10.75 41.91 4.57
4098 7441 1.102809 TGAGTTGGCTTGTGCACTGG 61.103 55.000 19.41 11.53 41.91 4.00
4121 7464 5.651139 GGAAACCTACAGGGATCTTAAAACC 59.349 44.000 0.00 0.00 40.27 3.27
4122 7465 6.464530 AAACCTACAGGGATCTTAAAACCT 57.535 37.500 0.00 0.00 40.27 3.50
4133 7476 9.922477 AGGGATCTTAAAACCTAGGAATAAAAG 57.078 33.333 17.98 11.78 0.00 2.27
4146 7489 5.464069 AGGAATAAAAGAAGTGGGGTGTTT 58.536 37.500 0.00 0.00 0.00 2.83
4161 7504 0.392461 TGTTTGGCCCATAGCGAGAC 60.392 55.000 0.00 0.00 45.17 3.36
4222 7565 3.815809 TCGAGTGGATGTTTTGTTTCCT 58.184 40.909 0.00 0.00 0.00 3.36
4232 7575 8.750298 TGGATGTTTTGTTTCCTGTAAAAAGTA 58.250 29.630 0.00 0.00 0.00 2.24
4258 7601 0.325390 AGGAGACCTTTCCTACGGGG 60.325 60.000 0.00 0.00 45.76 5.73
4518 7873 6.219417 TCAACAGACATTTTTGTCATGGTT 57.781 33.333 8.66 6.87 41.02 3.67
4578 7933 0.253044 TGGGCTTAGATGTCTGCCAC 59.747 55.000 11.94 4.28 46.53 5.01
4717 8072 8.416329 ACTTTGACAGCTATTTTCAATTGTCTT 58.584 29.630 5.13 0.00 36.71 3.01
4831 8221 7.519032 TTTGTTAAATTCGATTGTTCCTCCT 57.481 32.000 0.00 0.00 0.00 3.69
4942 8334 7.333423 TCGCTACTATCAACTTAGCAAACAATT 59.667 33.333 0.00 0.00 38.53 2.32
5056 8449 6.629128 TGTTGCTTCAGTTTCAAAGAAATCA 58.371 32.000 0.00 0.00 0.00 2.57
5196 8608 5.891551 GGGGAACAACTCACACCATATTATT 59.108 40.000 0.00 0.00 0.00 1.40
5265 8677 4.078516 GACTTACGCCGCCAGGGT 62.079 66.667 0.00 0.00 45.06 4.34
5383 8820 2.247358 GCCTCCCACAAAATTCTGGAA 58.753 47.619 0.00 0.00 0.00 3.53
5384 8821 2.632512 GCCTCCCACAAAATTCTGGAAA 59.367 45.455 0.00 0.00 0.00 3.13
5385 8822 3.070878 GCCTCCCACAAAATTCTGGAAAA 59.929 43.478 0.00 0.00 0.00 2.29
5386 8823 4.444164 GCCTCCCACAAAATTCTGGAAAAA 60.444 41.667 0.00 0.00 0.00 1.94
5464 8901 2.029623 TGATACAGTAGAACGGAGCCC 58.970 52.381 0.00 0.00 0.00 5.19
5589 9034 2.035449 TCTGTCAAGGTCGTAGTGTTGG 59.965 50.000 0.00 0.00 0.00 3.77
5600 9045 3.932710 TCGTAGTGTTGGAATGCAAGATC 59.067 43.478 0.00 0.00 0.00 2.75
5601 9046 3.684305 CGTAGTGTTGGAATGCAAGATCA 59.316 43.478 0.00 0.00 0.00 2.92
5602 9047 4.154015 CGTAGTGTTGGAATGCAAGATCAA 59.846 41.667 0.00 0.00 0.00 2.57
5603 9048 5.334802 CGTAGTGTTGGAATGCAAGATCAAA 60.335 40.000 0.00 0.00 0.00 2.69
5604 9049 5.534207 AGTGTTGGAATGCAAGATCAAAA 57.466 34.783 0.00 0.00 0.00 2.44
5605 9050 5.916318 AGTGTTGGAATGCAAGATCAAAAA 58.084 33.333 0.00 0.00 0.00 1.94
5624 9069 0.031994 ACAAAAACTGGATGCACGCC 59.968 50.000 0.00 0.00 0.00 5.68
5681 9126 3.181495 GCTATGTCTCTGTCGCTACTTGT 60.181 47.826 0.00 0.00 0.00 3.16
5682 9127 2.706555 TGTCTCTGTCGCTACTTGTG 57.293 50.000 0.00 0.00 0.00 3.33
5687 9132 0.792640 CTGTCGCTACTTGTGCTTGG 59.207 55.000 0.00 0.00 0.00 3.61
5957 9432 1.856265 GCCTTTTGCACCCAGTCGAG 61.856 60.000 0.00 0.00 40.77 4.04
6051 9526 1.961793 CCTGTTTGGTTCAGTCCGAA 58.038 50.000 0.00 0.00 0.00 4.30
6105 9580 6.940298 ACTGTCAGCAAATAGGTTAGCTTTTA 59.060 34.615 0.00 0.00 34.61 1.52
6106 9581 7.447238 ACTGTCAGCAAATAGGTTAGCTTTTAA 59.553 33.333 0.00 0.00 34.61 1.52
6135 9610 8.753497 TGTAGGGCTGATGATAGTATATACTG 57.247 38.462 23.09 7.55 37.10 2.74
6171 9652 1.301293 CTGGAAGGAAGTCAGGGCC 59.699 63.158 0.00 0.00 0.00 5.80
6210 9691 3.074504 CGATTCGTTCGGTATGAAGGA 57.925 47.619 0.00 0.00 46.63 3.36
6213 9694 2.768833 TCGTTCGGTATGAAGGATCG 57.231 50.000 0.00 0.00 44.26 3.69
6214 9695 2.291365 TCGTTCGGTATGAAGGATCGA 58.709 47.619 0.00 0.00 44.26 3.59
6215 9696 2.882761 TCGTTCGGTATGAAGGATCGAT 59.117 45.455 0.00 0.00 44.26 3.59
6216 9697 3.058432 TCGTTCGGTATGAAGGATCGATC 60.058 47.826 17.36 17.36 44.26 3.69
6217 9698 3.913711 CGTTCGGTATGAAGGATCGATCC 60.914 52.174 33.14 33.14 43.52 3.36
6225 9706 2.355956 GGATCGATCCGCCCGAAC 60.356 66.667 27.93 3.50 39.62 3.95
6226 9707 2.729862 GATCGATCCGCCCGAACG 60.730 66.667 14.76 0.00 39.62 3.95
6227 9708 3.480225 GATCGATCCGCCCGAACGT 62.480 63.158 14.76 0.00 39.62 3.99
6228 9709 2.948840 GATCGATCCGCCCGAACGTT 62.949 60.000 14.76 0.00 39.62 3.99
6229 9710 2.567564 ATCGATCCGCCCGAACGTTT 62.568 55.000 0.46 0.00 39.62 3.60
6230 9711 2.385091 CGATCCGCCCGAACGTTTT 61.385 57.895 0.46 0.00 32.50 2.43
6231 9712 1.422662 GATCCGCCCGAACGTTTTC 59.577 57.895 0.46 0.00 0.00 2.29
6243 9724 1.639534 CGTTTTCGTTCGGCAGTGT 59.360 52.632 0.00 0.00 38.65 3.55
6318 9799 3.620427 AAAAAGGAACAAAAAGCCCGT 57.380 38.095 0.00 0.00 0.00 5.28
6319 9800 4.739587 AAAAAGGAACAAAAAGCCCGTA 57.260 36.364 0.00 0.00 0.00 4.02
6392 9874 1.882623 AGCCAGTTTTTGCTCAGCTAC 59.117 47.619 0.00 0.00 30.33 3.58
6421 9903 8.461249 AAAATGTCATCAGCTTAGCAGAATAT 57.539 30.769 7.07 0.00 0.00 1.28
6478 9965 9.660180 TTTGACCAAACTATTTATAATTTGCCC 57.340 29.630 4.43 0.75 31.95 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.271438 CGTATCTACGTCCATGATTACATTCAG 59.729 40.741 0.00 0.00 44.13 3.02
21 22 3.408162 GCTACGTGCAACCGTATCTACG 61.408 54.545 9.66 2.80 41.95 3.51
32 33 1.666553 CGGGAACAGCTACGTGCAA 60.667 57.895 0.00 0.00 45.94 4.08
95 96 2.845752 GATGGCGACGGGTGCAAGTA 62.846 60.000 0.00 0.00 0.00 2.24
96 97 4.329545 ATGGCGACGGGTGCAAGT 62.330 61.111 0.00 0.00 0.00 3.16
109 110 1.102978 ACCCAAGTAATTGCGATGGC 58.897 50.000 13.42 0.00 40.52 4.40
112 113 7.404671 AAATAGAAACCCAAGTAATTGCGAT 57.595 32.000 0.00 0.00 0.00 4.58
139 140 7.064609 CACCGTTTCTGAGTATATGTGTTGATT 59.935 37.037 0.00 0.00 0.00 2.57
141 142 5.867174 CACCGTTTCTGAGTATATGTGTTGA 59.133 40.000 0.00 0.00 0.00 3.18
142 143 5.063438 CCACCGTTTCTGAGTATATGTGTTG 59.937 44.000 0.00 0.00 0.00 3.33
143 144 5.175859 CCACCGTTTCTGAGTATATGTGTT 58.824 41.667 0.00 0.00 0.00 3.32
144 145 4.755411 CCACCGTTTCTGAGTATATGTGT 58.245 43.478 0.00 0.00 0.00 3.72
145 146 3.555956 GCCACCGTTTCTGAGTATATGTG 59.444 47.826 0.00 0.00 0.00 3.21
146 147 3.196901 TGCCACCGTTTCTGAGTATATGT 59.803 43.478 0.00 0.00 0.00 2.29
147 148 3.792401 TGCCACCGTTTCTGAGTATATG 58.208 45.455 0.00 0.00 0.00 1.78
148 149 4.689612 ATGCCACCGTTTCTGAGTATAT 57.310 40.909 0.00 0.00 0.00 0.86
149 150 4.481368 AATGCCACCGTTTCTGAGTATA 57.519 40.909 0.00 0.00 0.00 1.47
150 151 3.350219 AATGCCACCGTTTCTGAGTAT 57.650 42.857 0.00 0.00 0.00 2.12
151 152 2.851263 AATGCCACCGTTTCTGAGTA 57.149 45.000 0.00 0.00 0.00 2.59
152 153 1.981256 AAATGCCACCGTTTCTGAGT 58.019 45.000 0.00 0.00 0.00 3.41
153 154 3.369546 AAAAATGCCACCGTTTCTGAG 57.630 42.857 0.00 0.00 30.10 3.35
155 156 6.616947 TCTAATAAAAATGCCACCGTTTCTG 58.383 36.000 0.00 0.00 30.10 3.02
157 158 7.411480 GCTTTCTAATAAAAATGCCACCGTTTC 60.411 37.037 0.00 0.00 30.10 2.78
158 159 6.367695 GCTTTCTAATAAAAATGCCACCGTTT 59.632 34.615 0.00 0.00 0.00 3.60
161 162 5.406649 TGCTTTCTAATAAAAATGCCACCG 58.593 37.500 0.00 0.00 0.00 4.94
162 163 6.183360 CGTTGCTTTCTAATAAAAATGCCACC 60.183 38.462 0.00 0.00 0.00 4.61
184 1491 1.243902 CCACAGGTGGTAATTGCGTT 58.756 50.000 10.34 0.00 45.53 4.84
185 1492 2.941210 CCACAGGTGGTAATTGCGT 58.059 52.632 10.34 0.00 45.53 5.24
195 1502 1.167851 CTAACCACATGCCACAGGTG 58.832 55.000 5.45 5.45 44.32 4.00
196 1503 0.609131 GCTAACCACATGCCACAGGT 60.609 55.000 0.00 0.00 35.47 4.00
197 1504 0.608856 TGCTAACCACATGCCACAGG 60.609 55.000 0.00 0.00 0.00 4.00
198 1505 1.246649 TTGCTAACCACATGCCACAG 58.753 50.000 0.00 0.00 0.00 3.66
199 1506 1.339610 GTTTGCTAACCACATGCCACA 59.660 47.619 0.00 0.00 0.00 4.17
200 1507 1.613437 AGTTTGCTAACCACATGCCAC 59.387 47.619 7.43 0.00 34.71 5.01
201 1508 1.885887 GAGTTTGCTAACCACATGCCA 59.114 47.619 7.43 0.00 34.71 4.92
202 1509 1.885887 TGAGTTTGCTAACCACATGCC 59.114 47.619 7.43 0.00 34.71 4.40
203 1510 3.641437 TTGAGTTTGCTAACCACATGC 57.359 42.857 7.43 0.00 34.71 4.06
204 1511 6.700960 TGAATTTTGAGTTTGCTAACCACATG 59.299 34.615 7.43 0.00 34.71 3.21
205 1512 6.701400 GTGAATTTTGAGTTTGCTAACCACAT 59.299 34.615 7.43 0.00 34.71 3.21
206 1513 6.039616 GTGAATTTTGAGTTTGCTAACCACA 58.960 36.000 7.43 6.00 34.71 4.17
207 1514 6.039616 TGTGAATTTTGAGTTTGCTAACCAC 58.960 36.000 7.43 6.62 34.71 4.16
208 1515 6.214191 TGTGAATTTTGAGTTTGCTAACCA 57.786 33.333 7.43 3.14 34.71 3.67
209 1516 8.296713 TCTATGTGAATTTTGAGTTTGCTAACC 58.703 33.333 7.43 0.58 34.71 2.85
210 1517 9.677567 TTCTATGTGAATTTTGAGTTTGCTAAC 57.322 29.630 2.56 2.56 34.36 2.34
212 1519 9.897744 CTTTCTATGTGAATTTTGAGTTTGCTA 57.102 29.630 0.00 0.00 34.24 3.49
213 1520 7.383300 GCTTTCTATGTGAATTTTGAGTTTGCT 59.617 33.333 0.00 0.00 34.24 3.91
214 1521 7.504818 GCTTTCTATGTGAATTTTGAGTTTGC 58.495 34.615 0.00 0.00 34.24 3.68
215 1522 7.591057 TCGCTTTCTATGTGAATTTTGAGTTTG 59.409 33.333 0.00 0.00 34.24 2.93
216 1523 7.591426 GTCGCTTTCTATGTGAATTTTGAGTTT 59.409 33.333 0.00 0.00 34.24 2.66
217 1524 7.078228 GTCGCTTTCTATGTGAATTTTGAGTT 58.922 34.615 0.00 0.00 34.24 3.01
218 1525 6.204688 TGTCGCTTTCTATGTGAATTTTGAGT 59.795 34.615 0.00 0.00 34.24 3.41
219 1526 6.521133 GTGTCGCTTTCTATGTGAATTTTGAG 59.479 38.462 0.00 0.00 34.24 3.02
220 1527 6.017523 TGTGTCGCTTTCTATGTGAATTTTGA 60.018 34.615 0.00 0.00 34.24 2.69
221 1528 6.142139 TGTGTCGCTTTCTATGTGAATTTTG 58.858 36.000 0.00 0.00 34.24 2.44
222 1529 6.312399 TGTGTCGCTTTCTATGTGAATTTT 57.688 33.333 0.00 0.00 34.24 1.82
223 1530 5.940192 TGTGTCGCTTTCTATGTGAATTT 57.060 34.783 0.00 0.00 34.24 1.82
224 1531 5.940192 TTGTGTCGCTTTCTATGTGAATT 57.060 34.783 0.00 0.00 34.24 2.17
225 1532 6.500684 AATTGTGTCGCTTTCTATGTGAAT 57.499 33.333 0.00 0.00 34.24 2.57
226 1533 5.940192 AATTGTGTCGCTTTCTATGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
227 1534 5.940192 AAATTGTGTCGCTTTCTATGTGA 57.060 34.783 0.00 0.00 0.00 3.58
228 1535 6.991485 AAAAATTGTGTCGCTTTCTATGTG 57.009 33.333 0.00 0.00 0.00 3.21
301 1609 5.579047 TCAATTGTAAGTTGGATGGTGGAT 58.421 37.500 5.13 0.00 0.00 3.41
367 1675 4.062677 AGCAATTTTCTGTGTGCAATGT 57.937 36.364 0.00 0.00 39.50 2.71
486 1797 8.242085 TCAAAATACGCGTCTCAACTTTTATA 57.758 30.769 18.63 0.00 0.00 0.98
488 1799 6.528014 TCAAAATACGCGTCTCAACTTTTA 57.472 33.333 18.63 0.00 0.00 1.52
491 1802 5.412526 TTTCAAAATACGCGTCTCAACTT 57.587 34.783 18.63 0.00 0.00 2.66
497 1808 4.250464 TCTCCATTTCAAAATACGCGTCT 58.750 39.130 18.63 1.73 0.00 4.18
498 1809 4.328983 TCTCTCCATTTCAAAATACGCGTC 59.671 41.667 18.63 0.00 0.00 5.19
501 1812 5.803020 ACTCTCTCCATTTCAAAATACGC 57.197 39.130 0.00 0.00 0.00 4.42
644 2060 5.254267 TGGGGATAGACATTACCTCCAAAAA 59.746 40.000 0.00 0.00 0.00 1.94
645 2061 4.791334 TGGGGATAGACATTACCTCCAAAA 59.209 41.667 0.00 0.00 0.00 2.44
646 2062 4.376223 TGGGGATAGACATTACCTCCAAA 58.624 43.478 0.00 0.00 0.00 3.28
647 2063 4.015617 TGGGGATAGACATTACCTCCAA 57.984 45.455 0.00 0.00 0.00 3.53
648 2064 3.714798 GTTGGGGATAGACATTACCTCCA 59.285 47.826 0.00 0.00 0.00 3.86
649 2065 3.974642 AGTTGGGGATAGACATTACCTCC 59.025 47.826 0.00 0.00 0.00 4.30
650 2066 4.202367 CCAGTTGGGGATAGACATTACCTC 60.202 50.000 0.00 0.00 0.00 3.85
651 2067 3.716872 CCAGTTGGGGATAGACATTACCT 59.283 47.826 0.00 0.00 0.00 3.08
652 2068 3.458487 ACCAGTTGGGGATAGACATTACC 59.542 47.826 2.79 0.00 42.91 2.85
653 2069 4.444449 GGACCAGTTGGGGATAGACATTAC 60.444 50.000 2.79 0.00 42.91 1.89
654 2070 3.714798 GGACCAGTTGGGGATAGACATTA 59.285 47.826 2.79 0.00 42.91 1.90
655 2071 2.509964 GGACCAGTTGGGGATAGACATT 59.490 50.000 2.79 0.00 42.91 2.71
656 2072 2.127708 GGACCAGTTGGGGATAGACAT 58.872 52.381 2.79 0.00 42.91 3.06
657 2073 1.203376 TGGACCAGTTGGGGATAGACA 60.203 52.381 2.79 0.00 42.91 3.41
658 2074 1.580059 TGGACCAGTTGGGGATAGAC 58.420 55.000 2.79 0.00 42.91 2.59
659 2075 2.587060 ATGGACCAGTTGGGGATAGA 57.413 50.000 0.00 0.00 42.91 1.98
660 2076 3.290710 CAAATGGACCAGTTGGGGATAG 58.709 50.000 23.89 0.00 42.91 2.08
661 2077 2.652348 ACAAATGGACCAGTTGGGGATA 59.348 45.455 31.77 0.00 42.61 2.59
662 2078 1.432807 ACAAATGGACCAGTTGGGGAT 59.567 47.619 31.77 13.43 42.61 3.85
663 2079 0.856982 ACAAATGGACCAGTTGGGGA 59.143 50.000 31.77 0.00 42.61 4.81
664 2080 1.256812 GACAAATGGACCAGTTGGGG 58.743 55.000 31.77 13.10 42.61 4.96
665 2081 1.256812 GGACAAATGGACCAGTTGGG 58.743 55.000 31.77 13.76 42.61 4.12
666 2082 1.888512 CTGGACAAATGGACCAGTTGG 59.111 52.381 31.77 17.59 42.61 3.77
667 2083 1.888512 CCTGGACAAATGGACCAGTTG 59.111 52.381 28.40 28.40 46.61 3.16
668 2084 1.780309 TCCTGGACAAATGGACCAGTT 59.220 47.619 19.63 0.16 46.61 3.16
669 2085 1.073923 GTCCTGGACAAATGGACCAGT 59.926 52.381 21.70 0.00 46.61 4.00
670 2086 1.073763 TGTCCTGGACAAATGGACCAG 59.926 52.381 26.54 16.53 46.97 4.00
671 2087 1.073763 CTGTCCTGGACAAATGGACCA 59.926 52.381 28.06 0.00 46.97 4.02
674 2090 0.321564 CGCTGTCCTGGACAAATGGA 60.322 55.000 28.06 6.56 42.26 3.41
694 2110 3.783362 CTTGGGCCGTGTTGGGTCA 62.783 63.158 0.00 0.00 38.63 4.02
695 2111 2.983592 CTTGGGCCGTGTTGGGTC 60.984 66.667 0.00 0.00 38.63 4.46
696 2112 3.367907 AACTTGGGCCGTGTTGGGT 62.368 57.895 12.20 0.00 38.63 4.51
697 2113 2.520741 AACTTGGGCCGTGTTGGG 60.521 61.111 12.20 0.00 38.63 4.12
698 2114 2.561037 GGAACTTGGGCCGTGTTGG 61.561 63.158 16.80 0.00 42.50 3.77
699 2115 1.388065 TTGGAACTTGGGCCGTGTTG 61.388 55.000 16.80 0.00 0.00 3.33
700 2116 0.684805 TTTGGAACTTGGGCCGTGTT 60.685 50.000 12.72 12.72 0.00 3.32
701 2117 0.469144 ATTTGGAACTTGGGCCGTGT 60.469 50.000 0.00 0.00 0.00 4.49
702 2118 0.243636 GATTTGGAACTTGGGCCGTG 59.756 55.000 0.00 0.00 0.00 4.94
703 2119 0.112412 AGATTTGGAACTTGGGCCGT 59.888 50.000 0.00 0.00 0.00 5.68
704 2120 0.811281 GAGATTTGGAACTTGGGCCG 59.189 55.000 0.00 0.00 0.00 6.13
705 2121 1.186200 GGAGATTTGGAACTTGGGCC 58.814 55.000 0.00 0.00 0.00 5.80
706 2122 0.811281 CGGAGATTTGGAACTTGGGC 59.189 55.000 0.00 0.00 0.00 5.36
707 2123 0.811281 GCGGAGATTTGGAACTTGGG 59.189 55.000 0.00 0.00 0.00 4.12
708 2124 1.740025 GAGCGGAGATTTGGAACTTGG 59.260 52.381 0.00 0.00 0.00 3.61
709 2125 2.417933 CTGAGCGGAGATTTGGAACTTG 59.582 50.000 0.00 0.00 0.00 3.16
710 2126 2.303022 TCTGAGCGGAGATTTGGAACTT 59.697 45.455 0.00 0.00 0.00 2.66
711 2127 1.902508 TCTGAGCGGAGATTTGGAACT 59.097 47.619 0.00 0.00 0.00 3.01
712 2128 2.275318 CTCTGAGCGGAGATTTGGAAC 58.725 52.381 0.00 0.00 35.52 3.62
713 2129 1.208052 CCTCTGAGCGGAGATTTGGAA 59.792 52.381 7.88 0.00 35.52 3.53
714 2130 0.826715 CCTCTGAGCGGAGATTTGGA 59.173 55.000 7.88 0.00 35.52 3.53
715 2131 0.179062 CCCTCTGAGCGGAGATTTGG 60.179 60.000 7.88 0.00 35.52 3.28
716 2132 0.826715 TCCCTCTGAGCGGAGATTTG 59.173 55.000 7.88 0.00 35.52 2.32
717 2133 0.827368 GTCCCTCTGAGCGGAGATTT 59.173 55.000 13.16 0.00 35.52 2.17
718 2134 0.324738 TGTCCCTCTGAGCGGAGATT 60.325 55.000 13.16 0.00 35.52 2.40
719 2135 1.040339 GTGTCCCTCTGAGCGGAGAT 61.040 60.000 13.16 0.00 35.52 2.75
720 2136 1.679305 GTGTCCCTCTGAGCGGAGA 60.679 63.158 13.16 10.34 35.52 3.71
721 2137 2.716017 GGTGTCCCTCTGAGCGGAG 61.716 68.421 13.16 0.00 0.00 4.63
722 2138 2.680352 GGTGTCCCTCTGAGCGGA 60.680 66.667 9.86 9.86 0.00 5.54
723 2139 4.135153 CGGTGTCCCTCTGAGCGG 62.135 72.222 0.00 2.58 0.00 5.52
724 2140 3.374402 ACGGTGTCCCTCTGAGCG 61.374 66.667 0.00 0.00 36.69 5.03
725 2141 2.262915 CACGGTGTCCCTCTGAGC 59.737 66.667 0.00 0.00 0.00 4.26
726 2142 1.587054 GTCACGGTGTCCCTCTGAG 59.413 63.158 8.17 0.00 0.00 3.35
727 2143 1.906824 GGTCACGGTGTCCCTCTGA 60.907 63.158 12.62 0.00 0.00 3.27
728 2144 2.657237 GGTCACGGTGTCCCTCTG 59.343 66.667 12.62 0.00 0.00 3.35
729 2145 2.603776 GGGTCACGGTGTCCCTCT 60.604 66.667 28.91 0.00 41.62 3.69
1018 2519 2.131067 GGGAGAGCGAGGGGAAGAG 61.131 68.421 0.00 0.00 0.00 2.85
1022 2523 4.816984 GTCGGGAGAGCGAGGGGA 62.817 72.222 0.00 0.00 41.26 4.81
1144 2645 3.321648 AGTGGCAGCCATGACGGA 61.322 61.111 19.75 0.00 37.19 4.69
1224 2725 1.792993 CGAAGCAGCATAGCAAACAGC 60.793 52.381 0.00 0.00 46.19 4.40
1251 2752 9.288576 GGATGATCATAACATAGGAACAAATCA 57.711 33.333 8.54 0.00 0.00 2.57
1252 2753 9.288576 TGGATGATCATAACATAGGAACAAATC 57.711 33.333 8.54 0.00 0.00 2.17
1259 2760 7.445121 GTGACTTGGATGATCATAACATAGGA 58.555 38.462 8.54 0.00 0.00 2.94
1263 2764 5.059161 CGGTGACTTGGATGATCATAACAT 58.941 41.667 8.54 0.00 0.00 2.71
1270 2771 2.699954 ACAACGGTGACTTGGATGATC 58.300 47.619 7.88 0.00 0.00 2.92
1273 2774 2.217750 TGAACAACGGTGACTTGGATG 58.782 47.619 7.88 0.00 0.00 3.51
1274 2775 2.494059 CTGAACAACGGTGACTTGGAT 58.506 47.619 7.88 0.00 0.00 3.41
1275 2776 1.948104 CTGAACAACGGTGACTTGGA 58.052 50.000 7.88 0.00 0.00 3.53
1277 2778 1.299541 AGCTGAACAACGGTGACTTG 58.700 50.000 7.88 0.00 0.00 3.16
1284 2785 2.755650 AGTACAGAAGCTGAACAACGG 58.244 47.619 0.82 0.00 35.18 4.44
1359 2863 4.094830 TGTTTCCTTGGTTACCCTCTTC 57.905 45.455 0.00 0.00 0.00 2.87
1471 2975 2.633481 ACTGACAGGAGGAGTAAACCAC 59.367 50.000 7.51 0.00 0.00 4.16
1485 2989 4.021104 TCCTGAATCCACAACTACTGACAG 60.021 45.833 0.00 0.00 0.00 3.51
1525 3032 5.337813 CCCCTCTTTGGAAAAATGGAAGATG 60.338 44.000 0.00 0.00 38.35 2.90
1598 3112 6.707608 TCTTTTCACGCAGATGCAATAGATAT 59.292 34.615 5.55 0.00 42.21 1.63
1602 3116 4.604843 TCTTTTCACGCAGATGCAATAG 57.395 40.909 5.55 0.00 42.21 1.73
1603 3117 4.694982 TCTTCTTTTCACGCAGATGCAATA 59.305 37.500 5.55 0.00 42.21 1.90
1604 3118 3.503363 TCTTCTTTTCACGCAGATGCAAT 59.497 39.130 5.55 0.00 42.21 3.56
1605 3119 2.877786 TCTTCTTTTCACGCAGATGCAA 59.122 40.909 5.55 0.00 42.21 4.08
1686 3201 7.818930 AGTCATTTTTATGTGCTTACCCATTTG 59.181 33.333 0.00 0.00 0.00 2.32
1693 3208 9.974750 GAAGACTAGTCATTTTTATGTGCTTAC 57.025 33.333 24.44 0.00 0.00 2.34
1748 3267 4.202441 ACATCTAAAGTTAGCATGCCCTG 58.798 43.478 15.66 0.00 0.00 4.45
1813 3336 6.338146 TCAGGCTTAGTTGTGTATACATCAC 58.662 40.000 9.18 8.85 36.53 3.06
1814 3337 6.538945 TCAGGCTTAGTTGTGTATACATCA 57.461 37.500 9.18 6.46 36.53 3.07
1815 3338 6.480320 CCTTCAGGCTTAGTTGTGTATACATC 59.520 42.308 9.18 3.86 36.53 3.06
1816 3339 6.349300 CCTTCAGGCTTAGTTGTGTATACAT 58.651 40.000 9.18 0.00 36.53 2.29
1919 3442 9.387397 ACCCTAGGGAAAGAAAAATCAAATAAA 57.613 29.630 35.38 0.00 38.96 1.40
2065 3589 2.040145 TCAAGCATGTGATCCAGGAACA 59.960 45.455 0.00 0.00 0.00 3.18
2111 3635 8.421249 AAAAATCCTCAATCCACAAATACTGA 57.579 30.769 0.00 0.00 0.00 3.41
2219 3743 4.801147 TCACGCAGATGCAATAGAAATC 57.199 40.909 5.55 0.00 42.21 2.17
2346 3870 4.455606 ACATCTAAAGTTAGCATGCCCTC 58.544 43.478 15.66 4.73 0.00 4.30
2407 3931 6.024049 GCTTAGTTGTGCATACATCACTTTC 58.976 40.000 0.00 0.00 36.53 2.62
2440 3964 3.262915 AGCAGACTTTTCTACAGCAGGAT 59.737 43.478 0.00 0.00 0.00 3.24
2845 5880 4.640789 AAAAACACTCACACGGCATTAA 57.359 36.364 0.00 0.00 0.00 1.40
2960 6008 4.637091 TGATGATCATCAATGTGTGTGTCC 59.363 41.667 31.46 5.26 44.14 4.02
3506 6848 7.328157 ACAAAATTATTTTAACGCTTGGTCG 57.672 32.000 2.37 0.00 0.00 4.79
3569 6911 9.844790 CTCAAAAGTCAAAATCTGCATACATAA 57.155 29.630 0.00 0.00 0.00 1.90
3694 7037 1.133761 TCCACCGAATGTTGGTTTCCA 60.134 47.619 0.00 0.00 37.72 3.53
3872 7215 0.687920 TGACATTACTGTTCGGCCCA 59.312 50.000 0.00 0.00 35.14 5.36
3874 7217 2.094762 AGTGACATTACTGTTCGGCC 57.905 50.000 0.00 0.00 35.14 6.13
3915 7258 6.573434 ACATTACGAGATGTGAGCTATGAAA 58.427 36.000 7.44 0.00 38.75 2.69
3969 7312 3.817647 GGGATGCTAAGATGGTGATGTTC 59.182 47.826 0.00 0.00 0.00 3.18
3976 7319 4.706842 AAATACGGGATGCTAAGATGGT 57.293 40.909 0.00 0.00 0.00 3.55
4013 7356 2.626266 CCGAACAGGCCCTTAAAGTTTT 59.374 45.455 0.00 0.00 0.00 2.43
4019 7362 0.323629 CAGTCCGAACAGGCCCTTAA 59.676 55.000 0.00 0.00 40.77 1.85
4066 7409 4.729868 AGCCAACTCAATTCCTGTACTTT 58.270 39.130 0.00 0.00 0.00 2.66
4095 7438 5.693769 TTAAGATCCCTGTAGGTTTCCAG 57.306 43.478 0.00 0.00 36.75 3.86
4098 7441 6.482524 AGGTTTTAAGATCCCTGTAGGTTTC 58.517 40.000 0.00 0.00 36.75 2.78
4121 7464 5.816682 ACACCCCACTTCTTTTATTCCTAG 58.183 41.667 0.00 0.00 0.00 3.02
4122 7465 5.853572 ACACCCCACTTCTTTTATTCCTA 57.146 39.130 0.00 0.00 0.00 2.94
4133 7476 2.207229 GGGCCAAACACCCCACTTC 61.207 63.158 4.39 0.00 42.01 3.01
4146 7489 1.220749 GTTGTCTCGCTATGGGCCA 59.779 57.895 9.61 9.61 37.74 5.36
4161 7504 4.749310 AGCCGGCTCGCTCAGTTG 62.749 66.667 27.08 0.00 32.06 3.16
4222 7565 6.958192 AGGTCTCCTATCCTGTACTTTTTACA 59.042 38.462 0.00 0.00 32.29 2.41
4232 7575 3.786213 AGGAAAGGTCTCCTATCCTGT 57.214 47.619 0.00 0.00 44.43 4.00
4258 7601 1.396301 CAAAGGAATCAGAGCGCTCAC 59.604 52.381 36.87 21.25 0.00 3.51
4578 7933 6.418101 TGGATACAGGAGGAAAAAGAATGAG 58.582 40.000 0.00 0.00 46.17 2.90
4692 8047 8.807667 AAGACAATTGAAAATAGCTGTCAAAG 57.192 30.769 13.59 1.80 36.49 2.77
4831 8221 2.496070 CTGTCAGAAATACCGTCTGGGA 59.504 50.000 0.00 0.00 42.37 4.37
5196 8608 4.121317 CAAATGCTTTGAAAGTTGCCTCA 58.879 39.130 6.81 0.00 43.26 3.86
5265 8677 2.841881 GGACACAAACCTGGGGATAGTA 59.158 50.000 0.00 0.00 0.00 1.82
5360 8797 2.289010 CCAGAATTTTGTGGGAGGCAAC 60.289 50.000 0.00 0.00 37.92 4.17
5383 8820 8.085909 TCGGTGTTTCTTTTCTCTTTTTCTTTT 58.914 29.630 0.00 0.00 0.00 2.27
5384 8821 7.541091 GTCGGTGTTTCTTTTCTCTTTTTCTTT 59.459 33.333 0.00 0.00 0.00 2.52
5385 8822 7.027760 GTCGGTGTTTCTTTTCTCTTTTTCTT 58.972 34.615 0.00 0.00 0.00 2.52
5386 8823 6.404403 GGTCGGTGTTTCTTTTCTCTTTTTCT 60.404 38.462 0.00 0.00 0.00 2.52
5461 8898 1.102978 AAGGTGCATTACATTCGGGC 58.897 50.000 0.00 0.00 0.00 6.13
5464 8901 8.957028 CATTGTTATTAAGGTGCATTACATTCG 58.043 33.333 0.00 0.00 34.68 3.34
5589 9034 7.641020 CCAGTTTTTGTTTTTGATCTTGCATTC 59.359 33.333 0.00 0.00 0.00 2.67
5600 9045 4.576678 CGTGCATCCAGTTTTTGTTTTTG 58.423 39.130 0.00 0.00 0.00 2.44
5601 9046 3.063316 GCGTGCATCCAGTTTTTGTTTTT 59.937 39.130 0.00 0.00 0.00 1.94
5602 9047 2.607180 GCGTGCATCCAGTTTTTGTTTT 59.393 40.909 0.00 0.00 0.00 2.43
5603 9048 2.200899 GCGTGCATCCAGTTTTTGTTT 58.799 42.857 0.00 0.00 0.00 2.83
5604 9049 1.537990 GGCGTGCATCCAGTTTTTGTT 60.538 47.619 0.00 0.00 0.00 2.83
5605 9050 0.031994 GGCGTGCATCCAGTTTTTGT 59.968 50.000 0.00 0.00 0.00 2.83
5698 9143 1.201647 CATGCTCTGCTTGTTCCAAGG 59.798 52.381 6.15 0.00 0.00 3.61
5699 9144 1.201647 CCATGCTCTGCTTGTTCCAAG 59.798 52.381 0.00 0.00 32.83 3.61
6051 9526 4.015084 CCAATCAAGCTCAAAGATGGACT 58.985 43.478 0.00 0.00 0.00 3.85
6111 9586 8.754991 ACAGTATATACTATCATCAGCCCTAC 57.245 38.462 15.03 0.00 34.13 3.18
6130 9605 8.047310 CCAGTTTTCTTTACCCATCTACAGTAT 58.953 37.037 0.00 0.00 0.00 2.12
6131 9606 7.236019 TCCAGTTTTCTTTACCCATCTACAGTA 59.764 37.037 0.00 0.00 0.00 2.74
6132 9607 6.043938 TCCAGTTTTCTTTACCCATCTACAGT 59.956 38.462 0.00 0.00 0.00 3.55
6133 9608 6.472887 TCCAGTTTTCTTTACCCATCTACAG 58.527 40.000 0.00 0.00 0.00 2.74
6135 9610 6.374613 CCTTCCAGTTTTCTTTACCCATCTAC 59.625 42.308 0.00 0.00 0.00 2.59
6200 9681 1.404315 GGCGGATCGATCCTTCATACC 60.404 57.143 35.31 23.56 44.93 2.73
6203 9684 1.674057 GGGCGGATCGATCCTTCAT 59.326 57.895 35.31 0.00 44.93 2.57
6204 9685 2.856628 CGGGCGGATCGATCCTTCA 61.857 63.158 35.31 0.00 44.93 3.02
6205 9686 2.049063 CGGGCGGATCGATCCTTC 60.049 66.667 35.31 26.89 44.93 3.46
6206 9687 2.131709 TTCGGGCGGATCGATCCTT 61.132 57.895 35.31 0.00 44.93 3.36
6207 9688 2.520982 TTCGGGCGGATCGATCCT 60.521 61.111 35.31 0.00 44.93 3.24
6208 9689 2.355956 GTTCGGGCGGATCGATCC 60.356 66.667 31.04 31.04 43.65 3.36
6209 9690 2.729862 CGTTCGGGCGGATCGATC 60.730 66.667 17.36 17.36 39.62 3.69
6210 9691 2.567564 AAACGTTCGGGCGGATCGAT 62.568 55.000 25.74 15.16 39.62 3.59
6211 9692 2.768503 AAAACGTTCGGGCGGATCGA 62.769 55.000 25.74 6.04 39.62 3.59
6212 9693 2.287637 GAAAACGTTCGGGCGGATCG 62.288 60.000 19.75 19.75 42.23 3.69
6213 9694 1.422662 GAAAACGTTCGGGCGGATC 59.577 57.895 0.00 0.00 35.98 3.36
6214 9695 3.569902 GAAAACGTTCGGGCGGAT 58.430 55.556 0.00 0.00 35.98 4.18
6222 9703 0.302589 ACTGCCGAACGAAAACGTTC 59.697 50.000 20.49 20.49 43.19 3.95
6223 9704 0.027063 CACTGCCGAACGAAAACGTT 59.973 50.000 7.69 7.69 34.52 3.99
6224 9705 1.085501 ACACTGCCGAACGAAAACGT 61.086 50.000 0.00 0.00 0.00 3.99
6225 9706 0.653323 CACACTGCCGAACGAAAACG 60.653 55.000 0.00 0.00 0.00 3.60
6226 9707 0.316689 CCACACTGCCGAACGAAAAC 60.317 55.000 0.00 0.00 0.00 2.43
6227 9708 0.462225 TCCACACTGCCGAACGAAAA 60.462 50.000 0.00 0.00 0.00 2.29
6228 9709 1.144276 TCCACACTGCCGAACGAAA 59.856 52.632 0.00 0.00 0.00 3.46
6229 9710 1.593209 GTCCACACTGCCGAACGAA 60.593 57.895 0.00 0.00 0.00 3.85
6230 9711 2.028484 GTCCACACTGCCGAACGA 59.972 61.111 0.00 0.00 0.00 3.85
6231 9712 3.403057 CGTCCACACTGCCGAACG 61.403 66.667 0.00 0.00 0.00 3.95
6232 9713 3.712881 GCGTCCACACTGCCGAAC 61.713 66.667 0.00 0.00 0.00 3.95
6233 9714 4.228567 TGCGTCCACACTGCCGAA 62.229 61.111 0.00 0.00 0.00 4.30
6234 9715 4.961511 GTGCGTCCACACTGCCGA 62.962 66.667 0.00 0.00 41.67 5.54
6236 9717 3.349006 CTGTGCGTCCACACTGCC 61.349 66.667 0.00 0.00 46.51 4.85
6238 9719 3.349006 GGCTGTGCGTCCACACTG 61.349 66.667 0.00 0.00 46.51 3.66
6239 9720 4.626081 GGGCTGTGCGTCCACACT 62.626 66.667 0.00 0.00 46.51 3.55
6243 9724 2.904866 GTTTGGGCTGTGCGTCCA 60.905 61.111 0.00 0.00 0.00 4.02
6302 9783 6.209788 TCATTATTTACGGGCTTTTTGTTCCT 59.790 34.615 0.00 0.00 0.00 3.36
6360 9841 8.310406 AGCAAAAACTGGCTTTTATTTATCAC 57.690 30.769 0.00 0.00 36.92 3.06
6362 9843 8.532977 TGAGCAAAAACTGGCTTTTATTTATC 57.467 30.769 0.00 0.00 41.22 1.75
6402 9884 9.783081 TCATTTTATATTCTGCTAAGCTGATGA 57.217 29.630 0.00 0.00 36.48 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.