Multiple sequence alignment - TraesCS2B01G480500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G480500 chr2B 100.000 2202 0 0 2125 4326 677954812 677957013 0.000000e+00 4067.0
1 TraesCS2B01G480500 chr2B 100.000 1844 0 0 1 1844 677952688 677954531 0.000000e+00 3406.0
2 TraesCS2B01G480500 chr2B 92.883 1096 39 20 2591 3679 678089121 678088058 0.000000e+00 1555.0
3 TraesCS2B01G480500 chr2B 89.664 1132 63 21 752 1838 678090192 678089070 0.000000e+00 1393.0
4 TraesCS2B01G480500 chr2B 86.758 657 49 14 3675 4309 678088029 678087389 0.000000e+00 697.0
5 TraesCS2B01G480500 chr2B 86.874 579 45 15 3193 3746 678068688 678068116 1.710000e-173 619.0
6 TraesCS2B01G480500 chr2B 90.476 483 25 7 1 480 678197470 678197006 6.150000e-173 617.0
7 TraesCS2B01G480500 chr2B 98.925 279 2 1 4048 4326 678067977 678067700 8.350000e-137 497.0
8 TraesCS2B01G480500 chr2B 79.506 688 73 36 1177 1822 678069953 678069292 1.110000e-115 427.0
9 TraesCS2B01G480500 chr2B 85.450 378 39 11 1402 1779 678199633 678199272 3.160000e-101 379.0
10 TraesCS2B01G480500 chr2B 78.723 611 63 39 3188 3738 678198080 678197477 3.200000e-91 346.0
11 TraesCS2B01G480500 chr2B 99.265 136 1 0 3879 4014 678068117 678067982 3.340000e-61 246.0
12 TraesCS2B01G480500 chr2B 77.062 497 59 32 629 1118 678070494 678070046 7.230000e-58 235.0
13 TraesCS2B01G480500 chr2B 89.412 170 15 3 561 727 678197008 678196839 1.220000e-50 211.0
14 TraesCS2B01G480500 chr2B 79.221 308 45 11 2771 3068 678199026 678198728 3.410000e-46 196.0
15 TraesCS2B01G480500 chr2B 80.237 253 39 8 2814 3063 678198368 678198124 3.440000e-41 180.0
16 TraesCS2B01G480500 chr2B 100.000 87 0 0 478 564 92796943 92796857 1.240000e-35 161.0
17 TraesCS2B01G480500 chr2B 91.743 109 7 2 478 585 158149132 158149025 2.690000e-32 150.0
18 TraesCS2B01G480500 chr2B 85.859 99 8 2 3958 4050 678079742 678079644 2.750000e-17 100.0
19 TraesCS2B01G480500 chr2A 87.646 1368 73 38 559 1842 706003316 706001961 0.000000e+00 1502.0
20 TraesCS2B01G480500 chr2A 89.826 806 38 22 2892 3679 706001357 706000578 0.000000e+00 994.0
21 TraesCS2B01G480500 chr2A 78.757 885 109 46 2957 3796 705926989 705926139 1.780000e-143 520.0
22 TraesCS2B01G480500 chr2A 86.085 424 43 12 1406 1823 705935739 705935326 3.970000e-120 442.0
23 TraesCS2B01G480500 chr2A 83.539 486 36 19 905 1377 705936268 705935814 8.660000e-112 414.0
24 TraesCS2B01G480500 chr2A 85.604 389 33 8 3675 4060 706000552 706000184 1.890000e-103 387.0
25 TraesCS2B01G480500 chr2A 84.514 381 48 8 1402 1779 706202336 706201964 2.460000e-97 366.0
26 TraesCS2B01G480500 chr2A 86.102 295 26 11 185 475 706003599 706003316 1.950000e-78 303.0
27 TraesCS2B01G480500 chr2A 90.233 215 18 2 3188 3400 706200564 706200351 1.180000e-70 278.0
28 TraesCS2B01G480500 chr2A 91.707 205 6 6 2203 2402 706001905 706001707 1.530000e-69 274.0
29 TraesCS2B01G480500 chr2A 93.678 174 3 3 2422 2591 706001575 706001406 2.000000e-63 254.0
30 TraesCS2B01G480500 chr2A 76.892 502 62 32 2591 3070 706002016 706001547 7.230000e-58 235.0
31 TraesCS2B01G480500 chr2A 75.347 576 75 39 629 1168 706203059 706202515 9.420000e-52 215.0
32 TraesCS2B01G480500 chr2A 79.487 312 40 12 2774 3069 706200904 706200601 2.640000e-47 200.0
33 TraesCS2B01G480500 chr2A 96.667 90 3 0 478 567 196348868 196348957 2.690000e-32 150.0
34 TraesCS2B01G480500 chr2A 84.932 146 8 8 4083 4215 706000190 706000046 7.550000e-28 135.0
35 TraesCS2B01G480500 chr2D 89.703 1214 46 30 2496 3679 565759463 565758299 0.000000e+00 1476.0
36 TraesCS2B01G480500 chr2D 85.514 1353 84 41 561 1844 565761467 565760158 0.000000e+00 1310.0
37 TraesCS2B01G480500 chr2D 87.429 525 29 8 3711 4215 565758185 565757678 1.750000e-158 569.0
38 TraesCS2B01G480500 chr2D 84.413 571 54 15 3137 3679 565694825 565694262 2.960000e-146 529.0
39 TraesCS2B01G480500 chr2D 83.372 427 45 13 1406 1823 565591335 565590926 5.280000e-99 372.0
40 TraesCS2B01G480500 chr2D 93.077 260 6 5 2148 2402 565760037 565759785 1.900000e-98 370.0
41 TraesCS2B01G480500 chr2D 85.000 380 40 8 1402 1779 565862674 565862310 1.900000e-98 370.0
42 TraesCS2B01G480500 chr2D 89.298 299 20 10 185 480 565761754 565761465 8.840000e-97 364.0
43 TraesCS2B01G480500 chr2D 89.456 294 19 9 3121 3404 642783287 642783578 1.140000e-95 361.0
44 TraesCS2B01G480500 chr2D 93.388 242 8 3 3923 4156 565694024 565693783 6.880000e-93 351.0
45 TraesCS2B01G480500 chr2D 89.451 237 20 3 3173 3404 565590628 565590392 1.180000e-75 294.0
46 TraesCS2B01G480500 chr2D 83.498 303 33 8 2774 3070 565861351 565861060 2.560000e-67 267.0
47 TraesCS2B01G480500 chr2D 88.688 221 19 5 3675 3895 565694236 565694022 9.220000e-67 265.0
48 TraesCS2B01G480500 chr2D 78.409 440 55 21 2646 3070 565760037 565759623 2.580000e-62 250.0
49 TraesCS2B01G480500 chr2D 76.667 510 65 30 629 1118 565599162 565598687 2.600000e-57 233.0
50 TraesCS2B01G480500 chr2D 81.107 307 43 6 2768 3070 642782800 642783095 9.360000e-57 231.0
51 TraesCS2B01G480500 chr2D 79.868 303 44 10 2771 3071 565862078 565861791 5.670000e-49 206.0
52 TraesCS2B01G480500 chr2D 86.885 183 18 5 945 1127 565695841 565695665 2.640000e-47 200.0
53 TraesCS2B01G480500 chr2D 85.714 161 19 2 2771 2928 565861868 565861709 2.680000e-37 167.0
54 TraesCS2B01G480500 chr2D 95.745 94 3 1 4233 4326 565693777 565693685 2.690000e-32 150.0
55 TraesCS2B01G480500 chr2D 83.951 162 16 8 959 1116 642781689 642781844 3.490000e-31 147.0
56 TraesCS2B01G480500 chr2D 94.937 79 2 1 2422 2500 565759653 565759577 5.870000e-24 122.0
57 TraesCS2B01G480500 chr2D 75.254 295 43 19 2597 2876 565695106 565694827 3.540000e-21 113.0
58 TraesCS2B01G480500 chr2D 87.912 91 11 0 1287 1377 565591495 565591405 1.650000e-19 108.0
59 TraesCS2B01G480500 chr2D 90.909 66 6 0 415 480 565599314 565599249 5.960000e-14 89.8
60 TraesCS2B01G480500 chr6D 97.753 89 2 0 475 563 385916938 385917026 2.080000e-33 154.0
61 TraesCS2B01G480500 chr6D 97.826 46 0 1 3071 3115 166764972 166764927 1.290000e-10 78.7
62 TraesCS2B01G480500 chr1B 95.833 96 2 2 468 562 332096569 332096663 2.080000e-33 154.0
63 TraesCS2B01G480500 chr5B 93.137 102 7 0 478 579 13830717 13830818 2.690000e-32 150.0
64 TraesCS2B01G480500 chr3B 95.652 92 4 0 478 569 753744243 753744152 9.690000e-32 148.0
65 TraesCS2B01G480500 chr3B 95.652 46 1 1 3071 3115 39144999 39144954 6.000000e-09 73.1
66 TraesCS2B01G480500 chr7B 94.681 94 5 0 470 563 731020465 731020558 3.490000e-31 147.0
67 TraesCS2B01G480500 chr4D 89.908 109 10 1 470 578 19442655 19442548 5.830000e-29 139.0
68 TraesCS2B01G480500 chr4D 97.826 46 0 1 3071 3115 403196576 403196621 1.290000e-10 78.7
69 TraesCS2B01G480500 chr5A 92.727 55 1 3 3074 3126 675396338 675396391 4.640000e-10 76.8
70 TraesCS2B01G480500 chr3D 94.118 51 0 3 3067 3115 572766625 572766674 1.670000e-09 75.0
71 TraesCS2B01G480500 chr7D 95.652 46 1 1 3071 3115 421932827 421932782 6.000000e-09 73.1
72 TraesCS2B01G480500 chr7D 92.157 51 2 2 3070 3118 421946269 421946219 2.160000e-08 71.3
73 TraesCS2B01G480500 chr5D 97.561 41 0 1 3071 3110 554578001 554578041 7.760000e-08 69.4
74 TraesCS2B01G480500 chr1D 93.478 46 2 1 3071 3115 138768564 138768609 2.790000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G480500 chr2B 677952688 677957013 4325 False 3736.500000 4067 100.000000 1 4326 2 chr2B.!!$F1 4325
1 TraesCS2B01G480500 chr2B 678087389 678090192 2803 True 1215.000000 1555 89.768333 752 4309 3 chr2B.!!$R5 3557
2 TraesCS2B01G480500 chr2B 678067700 678070494 2794 True 404.800000 619 88.326400 629 4326 5 chr2B.!!$R4 3697
3 TraesCS2B01G480500 chr2B 678196839 678199633 2794 True 321.500000 617 83.919833 1 3738 6 chr2B.!!$R6 3737
4 TraesCS2B01G480500 chr2A 705926139 705926989 850 True 520.000000 520 78.757000 2957 3796 1 chr2A.!!$R1 839
5 TraesCS2B01G480500 chr2A 706000046 706003599 3553 True 510.500000 1502 87.048375 185 4215 8 chr2A.!!$R3 4030
6 TraesCS2B01G480500 chr2A 705935326 705936268 942 True 428.000000 442 84.812000 905 1823 2 chr2A.!!$R2 918
7 TraesCS2B01G480500 chr2A 706200351 706203059 2708 True 264.750000 366 82.395250 629 3400 4 chr2A.!!$R4 2771
8 TraesCS2B01G480500 chr2D 565757678 565761754 4076 True 637.285714 1476 88.338143 185 4215 7 chr2D.!!$R4 4030
9 TraesCS2B01G480500 chr2D 565693685 565695841 2156 True 268.000000 529 87.395500 945 4326 6 chr2D.!!$R3 3381
10 TraesCS2B01G480500 chr2D 565590392 565591495 1103 True 258.000000 372 86.911667 1287 3404 3 chr2D.!!$R1 2117
11 TraesCS2B01G480500 chr2D 565861060 565862674 1614 True 252.500000 370 83.520000 1402 3071 4 chr2D.!!$R5 1669
12 TraesCS2B01G480500 chr2D 642781689 642783578 1889 False 246.333333 361 84.838000 959 3404 3 chr2D.!!$F1 2445

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.176449 GAATCCATGCTTGTTGCCCC 59.824 55.000 0.00 0.00 42.00 5.80 F
119 120 0.250989 TTCCCACGTTTCATCCCACC 60.251 55.000 0.00 0.00 0.00 4.61 F
1413 1875 0.179043 TTGTGGTGCTAAACTGCGGA 60.179 50.000 0.00 0.00 35.36 5.54 F
1416 1878 2.474712 GTGCTAAACTGCGGACGC 59.525 61.111 10.13 10.13 42.35 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1413 1875 0.106708 TTGAAGCCAAGAGACAGCGT 59.893 50.000 0.00 0.0 0.00 5.07 R
1702 2607 0.170784 CATGCATGTAACAGCGGCAA 59.829 50.000 18.91 0.0 38.08 4.52 R
2438 4402 2.568623 GGTCCAAACCACACAGAGAT 57.431 50.000 0.00 0.0 45.68 2.75 R
3353 7116 3.305720 TCCCAGTTAATCCAGCTATCGT 58.694 45.455 0.00 0.0 0.00 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.783111 GAAATCACATTGCCTTTGTAACCT 58.217 37.500 0.00 0.00 0.00 3.50
24 25 5.806654 AATCACATTGCCTTTGTAACCTT 57.193 34.783 0.00 0.00 0.00 3.50
25 26 4.846779 TCACATTGCCTTTGTAACCTTC 57.153 40.909 0.00 0.00 0.00 3.46
26 27 4.211125 TCACATTGCCTTTGTAACCTTCA 58.789 39.130 0.00 0.00 0.00 3.02
27 28 4.037446 TCACATTGCCTTTGTAACCTTCAC 59.963 41.667 0.00 0.00 0.00 3.18
28 29 4.037923 CACATTGCCTTTGTAACCTTCACT 59.962 41.667 0.00 0.00 0.00 3.41
29 30 4.037923 ACATTGCCTTTGTAACCTTCACTG 59.962 41.667 0.00 0.00 0.00 3.66
30 31 3.569194 TGCCTTTGTAACCTTCACTGA 57.431 42.857 0.00 0.00 0.00 3.41
31 32 3.892284 TGCCTTTGTAACCTTCACTGAA 58.108 40.909 0.00 0.00 0.00 3.02
32 33 4.469657 TGCCTTTGTAACCTTCACTGAAT 58.530 39.130 0.00 0.00 0.00 2.57
33 34 4.518970 TGCCTTTGTAACCTTCACTGAATC 59.481 41.667 0.00 0.00 0.00 2.52
34 35 4.082733 GCCTTTGTAACCTTCACTGAATCC 60.083 45.833 0.00 0.00 0.00 3.01
35 36 5.070001 CCTTTGTAACCTTCACTGAATCCA 58.930 41.667 0.00 0.00 0.00 3.41
36 37 5.711976 CCTTTGTAACCTTCACTGAATCCAT 59.288 40.000 0.00 0.00 0.00 3.41
37 38 6.349611 CCTTTGTAACCTTCACTGAATCCATG 60.350 42.308 0.00 0.00 0.00 3.66
38 39 4.009675 TGTAACCTTCACTGAATCCATGC 58.990 43.478 0.00 0.00 0.00 4.06
39 40 3.446442 AACCTTCACTGAATCCATGCT 57.554 42.857 0.00 0.00 0.00 3.79
40 41 3.446442 ACCTTCACTGAATCCATGCTT 57.554 42.857 0.00 0.00 0.00 3.91
41 42 3.087031 ACCTTCACTGAATCCATGCTTG 58.913 45.455 0.00 0.00 0.00 4.01
42 43 3.087031 CCTTCACTGAATCCATGCTTGT 58.913 45.455 0.00 0.00 0.00 3.16
43 44 3.508793 CCTTCACTGAATCCATGCTTGTT 59.491 43.478 0.00 0.00 0.00 2.83
44 45 4.482386 CTTCACTGAATCCATGCTTGTTG 58.518 43.478 0.00 0.00 0.00 3.33
45 46 2.229543 TCACTGAATCCATGCTTGTTGC 59.770 45.455 0.00 0.00 43.25 4.17
46 47 1.547372 ACTGAATCCATGCTTGTTGCC 59.453 47.619 0.00 0.00 42.00 4.52
47 48 0.896923 TGAATCCATGCTTGTTGCCC 59.103 50.000 0.00 0.00 42.00 5.36
48 49 0.176449 GAATCCATGCTTGTTGCCCC 59.824 55.000 0.00 0.00 42.00 5.80
49 50 0.544833 AATCCATGCTTGTTGCCCCA 60.545 50.000 0.00 0.00 42.00 4.96
50 51 0.325860 ATCCATGCTTGTTGCCCCAT 60.326 50.000 0.00 0.00 42.00 4.00
51 52 1.219664 CCATGCTTGTTGCCCCATG 59.780 57.895 0.00 0.00 42.00 3.66
52 53 1.448893 CATGCTTGTTGCCCCATGC 60.449 57.895 4.28 4.28 42.00 4.06
53 54 1.611261 ATGCTTGTTGCCCCATGCT 60.611 52.632 10.54 0.00 42.00 3.79
54 55 1.895020 ATGCTTGTTGCCCCATGCTG 61.895 55.000 10.54 0.00 42.00 4.41
55 56 2.263540 CTTGTTGCCCCATGCTGC 59.736 61.111 0.00 0.00 42.00 5.25
56 57 3.305177 CTTGTTGCCCCATGCTGCC 62.305 63.158 0.00 0.00 42.00 4.85
57 58 4.617556 TGTTGCCCCATGCTGCCA 62.618 61.111 0.00 0.00 42.00 4.92
58 59 3.312718 GTTGCCCCATGCTGCCAA 61.313 61.111 0.00 0.00 42.00 4.52
59 60 3.312718 TTGCCCCATGCTGCCAAC 61.313 61.111 0.00 0.00 42.00 3.77
62 63 3.072468 CCCCATGCTGCCAACCTG 61.072 66.667 0.00 0.00 0.00 4.00
63 64 2.283388 CCCATGCTGCCAACCTGT 60.283 61.111 0.00 0.00 0.00 4.00
64 65 2.642254 CCCATGCTGCCAACCTGTG 61.642 63.158 0.00 0.00 0.00 3.66
65 66 1.904865 CCATGCTGCCAACCTGTGT 60.905 57.895 0.00 0.00 0.00 3.72
66 67 1.466025 CCATGCTGCCAACCTGTGTT 61.466 55.000 0.00 0.00 34.14 3.32
83 84 6.414408 CTGTGTTGATCATACAGGAGTTTC 57.586 41.667 23.19 8.26 38.46 2.78
84 85 5.863965 TGTGTTGATCATACAGGAGTTTCA 58.136 37.500 8.71 1.98 0.00 2.69
85 86 6.475504 TGTGTTGATCATACAGGAGTTTCAT 58.524 36.000 8.71 0.00 0.00 2.57
86 87 6.372381 TGTGTTGATCATACAGGAGTTTCATG 59.628 38.462 8.71 0.00 33.86 3.07
87 88 6.372659 GTGTTGATCATACAGGAGTTTCATGT 59.627 38.462 0.00 1.87 44.22 3.21
88 89 6.942005 TGTTGATCATACAGGAGTTTCATGTT 59.058 34.615 0.00 0.00 38.32 2.71
89 90 7.119699 TGTTGATCATACAGGAGTTTCATGTTC 59.880 37.037 0.00 0.00 38.32 3.18
90 91 6.710278 TGATCATACAGGAGTTTCATGTTCA 58.290 36.000 1.53 0.00 38.32 3.18
91 92 7.341030 TGATCATACAGGAGTTTCATGTTCAT 58.659 34.615 1.53 0.00 38.32 2.57
92 93 6.990341 TCATACAGGAGTTTCATGTTCATG 57.010 37.500 1.53 6.46 38.32 3.07
93 94 5.882000 TCATACAGGAGTTTCATGTTCATGG 59.118 40.000 12.02 0.00 38.32 3.66
94 95 2.821969 ACAGGAGTTTCATGTTCATGGC 59.178 45.455 12.02 4.54 38.32 4.40
95 96 3.087031 CAGGAGTTTCATGTTCATGGCT 58.913 45.455 12.02 8.43 0.00 4.75
96 97 3.087031 AGGAGTTTCATGTTCATGGCTG 58.913 45.455 12.02 0.00 0.00 4.85
97 98 3.084039 GGAGTTTCATGTTCATGGCTGA 58.916 45.455 12.02 0.00 0.00 4.26
98 99 3.507233 GGAGTTTCATGTTCATGGCTGAA 59.493 43.478 12.02 0.00 39.07 3.02
99 100 4.022068 GGAGTTTCATGTTCATGGCTGAAA 60.022 41.667 12.02 4.56 42.85 2.69
100 101 5.337009 GGAGTTTCATGTTCATGGCTGAAAT 60.337 40.000 12.02 3.47 42.85 2.17
101 102 6.105397 AGTTTCATGTTCATGGCTGAAATT 57.895 33.333 12.02 8.29 42.85 1.82
102 103 6.161381 AGTTTCATGTTCATGGCTGAAATTC 58.839 36.000 12.02 0.00 42.85 2.17
103 104 4.724074 TCATGTTCATGGCTGAAATTCC 57.276 40.909 12.02 0.00 42.85 3.01
104 105 3.448301 TCATGTTCATGGCTGAAATTCCC 59.552 43.478 12.02 0.00 42.85 3.97
105 106 2.886913 TGTTCATGGCTGAAATTCCCA 58.113 42.857 0.00 0.00 42.85 4.37
106 107 2.562298 TGTTCATGGCTGAAATTCCCAC 59.438 45.455 0.00 0.00 42.85 4.61
107 108 1.462616 TCATGGCTGAAATTCCCACG 58.537 50.000 0.00 0.00 0.00 4.94
108 109 1.176527 CATGGCTGAAATTCCCACGT 58.823 50.000 0.00 0.00 0.00 4.49
109 110 1.545582 CATGGCTGAAATTCCCACGTT 59.454 47.619 0.00 0.00 0.00 3.99
110 111 1.698506 TGGCTGAAATTCCCACGTTT 58.301 45.000 0.00 0.00 0.00 3.60
111 112 1.611491 TGGCTGAAATTCCCACGTTTC 59.389 47.619 0.00 0.00 35.45 2.78
112 113 1.611491 GGCTGAAATTCCCACGTTTCA 59.389 47.619 0.00 0.00 40.81 2.69
113 114 2.231235 GGCTGAAATTCCCACGTTTCAT 59.769 45.455 0.00 0.00 41.80 2.57
114 115 3.501950 GCTGAAATTCCCACGTTTCATC 58.498 45.455 0.00 0.00 41.80 2.92
115 116 3.673323 GCTGAAATTCCCACGTTTCATCC 60.673 47.826 0.00 0.00 41.80 3.51
116 117 2.823154 TGAAATTCCCACGTTTCATCCC 59.177 45.455 0.00 0.00 38.88 3.85
117 118 2.595750 AATTCCCACGTTTCATCCCA 57.404 45.000 0.00 0.00 0.00 4.37
118 119 1.834188 ATTCCCACGTTTCATCCCAC 58.166 50.000 0.00 0.00 0.00 4.61
119 120 0.250989 TTCCCACGTTTCATCCCACC 60.251 55.000 0.00 0.00 0.00 4.61
120 121 1.074072 CCCACGTTTCATCCCACCA 59.926 57.895 0.00 0.00 0.00 4.17
121 122 0.538516 CCCACGTTTCATCCCACCAA 60.539 55.000 0.00 0.00 0.00 3.67
122 123 0.881118 CCACGTTTCATCCCACCAAG 59.119 55.000 0.00 0.00 0.00 3.61
123 124 0.881118 CACGTTTCATCCCACCAAGG 59.119 55.000 0.00 0.00 37.03 3.61
124 125 0.768622 ACGTTTCATCCCACCAAGGA 59.231 50.000 0.00 0.00 41.22 3.36
125 126 1.144093 ACGTTTCATCCCACCAAGGAA 59.856 47.619 0.00 0.00 40.04 3.36
126 127 1.539827 CGTTTCATCCCACCAAGGAAC 59.460 52.381 0.00 0.00 40.04 3.62
127 128 2.593026 GTTTCATCCCACCAAGGAACA 58.407 47.619 0.00 0.00 40.04 3.18
128 129 3.165071 GTTTCATCCCACCAAGGAACAT 58.835 45.455 0.00 0.00 40.04 2.71
129 130 4.340617 GTTTCATCCCACCAAGGAACATA 58.659 43.478 0.00 0.00 40.04 2.29
130 131 3.644966 TCATCCCACCAAGGAACATAC 57.355 47.619 0.00 0.00 40.04 2.39
131 132 3.189606 TCATCCCACCAAGGAACATACT 58.810 45.455 0.00 0.00 40.04 2.12
132 133 3.199946 TCATCCCACCAAGGAACATACTC 59.800 47.826 0.00 0.00 40.04 2.59
133 134 1.913419 TCCCACCAAGGAACATACTCC 59.087 52.381 0.00 0.00 41.22 3.85
134 135 1.064685 CCCACCAAGGAACATACTCCC 60.065 57.143 0.00 0.00 41.22 4.30
135 136 1.633432 CCACCAAGGAACATACTCCCA 59.367 52.381 0.00 0.00 41.22 4.37
136 137 2.356125 CCACCAAGGAACATACTCCCAG 60.356 54.545 0.00 0.00 41.22 4.45
137 138 2.571653 CACCAAGGAACATACTCCCAGA 59.428 50.000 0.00 0.00 35.95 3.86
138 139 2.840651 ACCAAGGAACATACTCCCAGAG 59.159 50.000 0.00 0.00 35.95 3.35
139 140 2.420687 CCAAGGAACATACTCCCAGAGC 60.421 54.545 0.00 0.00 35.95 4.09
140 141 2.503356 CAAGGAACATACTCCCAGAGCT 59.497 50.000 0.00 0.00 35.95 4.09
141 142 2.114616 AGGAACATACTCCCAGAGCTG 58.885 52.381 0.00 0.00 35.95 4.24
142 143 1.834263 GGAACATACTCCCAGAGCTGT 59.166 52.381 0.00 0.00 32.66 4.40
143 144 2.159028 GGAACATACTCCCAGAGCTGTC 60.159 54.545 0.00 0.00 30.94 3.51
144 145 1.490574 ACATACTCCCAGAGCTGTCC 58.509 55.000 0.00 0.00 32.04 4.02
145 146 1.273267 ACATACTCCCAGAGCTGTCCA 60.273 52.381 0.00 0.00 32.04 4.02
146 147 2.045524 CATACTCCCAGAGCTGTCCAT 58.954 52.381 0.00 0.00 32.04 3.41
147 148 1.489481 TACTCCCAGAGCTGTCCATG 58.511 55.000 0.00 0.00 32.04 3.66
148 149 1.270414 ACTCCCAGAGCTGTCCATGG 61.270 60.000 4.97 4.97 32.04 3.66
149 150 1.229625 TCCCAGAGCTGTCCATGGT 60.230 57.895 12.58 0.00 0.00 3.55
150 151 0.842030 TCCCAGAGCTGTCCATGGTT 60.842 55.000 12.58 0.00 0.00 3.67
151 152 0.679002 CCCAGAGCTGTCCATGGTTG 60.679 60.000 12.58 4.38 0.00 3.77
152 153 1.310933 CCAGAGCTGTCCATGGTTGC 61.311 60.000 12.58 14.11 0.00 4.17
153 154 1.376424 AGAGCTGTCCATGGTTGCG 60.376 57.895 12.58 0.21 0.00 4.85
154 155 2.360350 AGCTGTCCATGGTTGCGG 60.360 61.111 12.58 9.60 0.00 5.69
155 156 4.120331 GCTGTCCATGGTTGCGGC 62.120 66.667 12.58 15.38 0.00 6.53
156 157 3.443045 CTGTCCATGGTTGCGGCC 61.443 66.667 12.58 0.00 0.00 6.13
161 162 4.122149 CATGGTTGCGGCCCCCTA 62.122 66.667 0.00 0.00 0.00 3.53
162 163 4.123545 ATGGTTGCGGCCCCCTAC 62.124 66.667 0.00 0.00 0.00 3.18
164 165 4.796495 GGTTGCGGCCCCCTACTG 62.796 72.222 0.00 0.00 0.00 2.74
165 166 4.029809 GTTGCGGCCCCCTACTGT 62.030 66.667 0.00 0.00 0.00 3.55
166 167 3.712907 TTGCGGCCCCCTACTGTC 61.713 66.667 0.00 0.00 0.00 3.51
169 170 3.782443 CGGCCCCCTACTGTCCAC 61.782 72.222 0.00 0.00 0.00 4.02
170 171 3.408853 GGCCCCCTACTGTCCACC 61.409 72.222 0.00 0.00 0.00 4.61
171 172 3.782443 GCCCCCTACTGTCCACCG 61.782 72.222 0.00 0.00 0.00 4.94
172 173 3.081409 CCCCCTACTGTCCACCGG 61.081 72.222 0.00 0.00 0.00 5.28
173 174 3.782443 CCCCTACTGTCCACCGGC 61.782 72.222 0.00 0.00 0.00 6.13
174 175 3.000819 CCCTACTGTCCACCGGCA 61.001 66.667 0.00 0.00 0.00 5.69
175 176 2.579201 CCTACTGTCCACCGGCAG 59.421 66.667 0.00 2.74 38.58 4.85
176 177 2.283529 CCTACTGTCCACCGGCAGT 61.284 63.158 15.46 15.46 46.33 4.40
177 178 0.968901 CCTACTGTCCACCGGCAGTA 60.969 60.000 15.96 15.96 43.30 2.74
178 179 2.575108 TACTGTCCACCGGCAGTAG 58.425 57.895 13.68 4.12 43.30 2.57
179 180 0.968901 TACTGTCCACCGGCAGTAGG 60.969 60.000 13.68 3.80 43.30 3.18
180 181 3.000819 TGTCCACCGGCAGTAGGG 61.001 66.667 0.00 0.00 0.00 3.53
181 182 3.782443 GTCCACCGGCAGTAGGGG 61.782 72.222 0.00 0.00 0.00 4.79
182 183 4.000620 TCCACCGGCAGTAGGGGA 62.001 66.667 0.00 0.00 32.83 4.81
183 184 3.470888 CCACCGGCAGTAGGGGAG 61.471 72.222 0.00 0.00 32.83 4.30
184 185 2.683933 CACCGGCAGTAGGGGAGT 60.684 66.667 0.00 0.00 32.83 3.85
185 186 2.122056 ACCGGCAGTAGGGGAGTT 59.878 61.111 0.00 0.00 0.00 3.01
186 187 1.988406 ACCGGCAGTAGGGGAGTTC 60.988 63.158 0.00 0.00 0.00 3.01
187 188 2.494918 CGGCAGTAGGGGAGTTCG 59.505 66.667 0.00 0.00 0.00 3.95
188 189 2.187163 GGCAGTAGGGGAGTTCGC 59.813 66.667 0.00 0.00 0.00 4.70
189 190 2.359967 GGCAGTAGGGGAGTTCGCT 61.360 63.158 0.00 0.00 41.77 4.93
190 191 1.142097 GCAGTAGGGGAGTTCGCTC 59.858 63.158 0.00 0.00 43.36 5.03
191 192 1.324005 GCAGTAGGGGAGTTCGCTCT 61.324 60.000 0.00 0.00 43.59 4.09
192 193 2.022754 GCAGTAGGGGAGTTCGCTCTA 61.023 57.143 0.00 0.00 43.59 2.43
193 194 1.950909 CAGTAGGGGAGTTCGCTCTAG 59.049 57.143 0.00 0.00 43.59 2.43
209 210 1.201647 TCTAGTTAGAGTGCGTGTGGC 59.798 52.381 0.00 0.00 43.96 5.01
210 211 1.202582 CTAGTTAGAGTGCGTGTGGCT 59.797 52.381 0.00 0.00 44.05 4.75
212 213 1.202651 AGTTAGAGTGCGTGTGGCTTT 60.203 47.619 0.00 0.00 44.05 3.51
220 221 2.096417 GTGCGTGTGGCTTTAGTTGTAG 60.096 50.000 0.00 0.00 44.05 2.74
223 224 3.363673 GCGTGTGGCTTTAGTTGTAGTTC 60.364 47.826 0.00 0.00 39.11 3.01
225 226 4.386711 GTGTGGCTTTAGTTGTAGTTCCT 58.613 43.478 0.00 0.00 0.00 3.36
228 229 6.653740 GTGTGGCTTTAGTTGTAGTTCCTAAT 59.346 38.462 0.00 0.00 0.00 1.73
229 230 7.174426 GTGTGGCTTTAGTTGTAGTTCCTAATT 59.826 37.037 0.00 0.00 0.00 1.40
230 231 8.377034 TGTGGCTTTAGTTGTAGTTCCTAATTA 58.623 33.333 0.00 0.00 0.00 1.40
231 232 9.223099 GTGGCTTTAGTTGTAGTTCCTAATTAA 57.777 33.333 0.00 0.00 0.00 1.40
232 233 9.444600 TGGCTTTAGTTGTAGTTCCTAATTAAG 57.555 33.333 0.00 0.00 0.00 1.85
233 234 9.662947 GGCTTTAGTTGTAGTTCCTAATTAAGA 57.337 33.333 0.00 0.00 0.00 2.10
289 291 4.012374 TGGCCTCTCTTTTGCTCATAAAG 58.988 43.478 3.32 0.00 34.63 1.85
475 477 5.391097 CGCAAGGTTTGACCGTTCATATTAA 60.391 40.000 0.00 0.00 44.90 1.40
477 479 7.033185 GCAAGGTTTGACCGTTCATATTAATT 58.967 34.615 0.00 0.00 44.90 1.40
478 480 8.185505 GCAAGGTTTGACCGTTCATATTAATTA 58.814 33.333 0.00 0.00 44.90 1.40
479 481 9.498307 CAAGGTTTGACCGTTCATATTAATTAC 57.502 33.333 0.00 0.00 44.90 1.89
480 482 9.457436 AAGGTTTGACCGTTCATATTAATTACT 57.543 29.630 0.00 0.00 44.90 2.24
481 483 9.106070 AGGTTTGACCGTTCATATTAATTACTC 57.894 33.333 0.00 0.00 44.90 2.59
482 484 8.340443 GGTTTGACCGTTCATATTAATTACTCC 58.660 37.037 0.00 0.00 0.00 3.85
483 485 8.340443 GTTTGACCGTTCATATTAATTACTCCC 58.660 37.037 0.00 0.00 0.00 4.30
484 486 7.369551 TGACCGTTCATATTAATTACTCCCT 57.630 36.000 0.00 0.00 0.00 4.20
485 487 7.439381 TGACCGTTCATATTAATTACTCCCTC 58.561 38.462 0.00 0.00 0.00 4.30
486 488 7.289317 TGACCGTTCATATTAATTACTCCCTCT 59.711 37.037 0.00 0.00 0.00 3.69
487 489 7.442656 ACCGTTCATATTAATTACTCCCTCTG 58.557 38.462 0.00 0.00 0.00 3.35
488 490 7.070821 ACCGTTCATATTAATTACTCCCTCTGT 59.929 37.037 0.00 0.00 0.00 3.41
489 491 8.582437 CCGTTCATATTAATTACTCCCTCTGTA 58.418 37.037 0.00 0.00 0.00 2.74
490 492 9.976511 CGTTCATATTAATTACTCCCTCTGTAA 57.023 33.333 0.00 0.00 34.87 2.41
498 500 9.802039 TTAATTACTCCCTCTGTAAACAAATGT 57.198 29.630 0.00 0.00 34.20 2.71
500 502 9.802039 AATTACTCCCTCTGTAAACAAATGTAA 57.198 29.630 0.00 0.00 34.20 2.41
501 503 8.842358 TTACTCCCTCTGTAAACAAATGTAAG 57.158 34.615 0.00 0.00 0.00 2.34
502 504 7.074653 ACTCCCTCTGTAAACAAATGTAAGA 57.925 36.000 0.00 0.00 0.00 2.10
503 505 7.162082 ACTCCCTCTGTAAACAAATGTAAGAG 58.838 38.462 0.00 0.00 0.00 2.85
504 506 7.074653 TCCCTCTGTAAACAAATGTAAGAGT 57.925 36.000 11.36 0.00 0.00 3.24
505 507 6.934645 TCCCTCTGTAAACAAATGTAAGAGTG 59.065 38.462 11.36 4.48 0.00 3.51
506 508 6.710744 CCCTCTGTAAACAAATGTAAGAGTGT 59.289 38.462 11.36 0.00 0.00 3.55
507 509 7.228706 CCCTCTGTAAACAAATGTAAGAGTGTT 59.771 37.037 11.36 0.00 35.77 3.32
508 510 8.621286 CCTCTGTAAACAAATGTAAGAGTGTTT 58.379 33.333 5.98 5.98 44.23 2.83
516 518 9.561069 AACAAATGTAAGAGTGTTTAGATCACT 57.439 29.630 0.00 0.00 46.86 3.41
553 555 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
554 556 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
555 557 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
556 558 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
557 559 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
558 560 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
559 561 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
573 575 5.190677 ACGGAGGGAGTACCAATTTATTTG 58.809 41.667 0.00 0.00 43.89 2.32
574 576 5.045432 ACGGAGGGAGTACCAATTTATTTGA 60.045 40.000 0.00 0.00 43.89 2.69
609 611 7.234782 TGGAGTTACCAGATATTAATCGTCCAT 59.765 37.037 0.00 0.00 44.64 3.41
610 612 8.095169 GGAGTTACCAGATATTAATCGTCCATT 58.905 37.037 0.00 0.00 37.19 3.16
624 626 3.749088 TCGTCCATTAAATGCTCAAACGT 59.251 39.130 0.00 0.00 0.00 3.99
645 648 3.784701 ATACTGCGAATATAGGAGCCG 57.215 47.619 0.00 0.00 0.00 5.52
713 718 7.254227 ACGAGTTTGCTTTTAAGACATTGTA 57.746 32.000 0.00 0.00 0.00 2.41
719 724 9.899226 GTTTGCTTTTAAGACATTGTAAGATCT 57.101 29.630 0.00 0.00 0.00 2.75
772 840 0.256177 CCTTAGACCTTGGGCCTTCC 59.744 60.000 4.53 0.00 0.00 3.46
797 882 2.572290 GCCAAAACTGTAGAGTGTGGT 58.428 47.619 18.82 0.00 39.16 4.16
798 883 2.949644 GCCAAAACTGTAGAGTGTGGTT 59.050 45.455 18.82 0.00 39.16 3.67
799 884 3.243068 GCCAAAACTGTAGAGTGTGGTTG 60.243 47.826 18.82 10.26 39.16 3.77
888 993 4.200283 GGCTGCGTCTCCTCCTCG 62.200 72.222 0.00 0.00 0.00 4.63
889 994 4.200283 GCTGCGTCTCCTCCTCGG 62.200 72.222 0.00 0.00 0.00 4.63
951 1069 2.281484 CTTCCACCACCACCACCG 60.281 66.667 0.00 0.00 0.00 4.94
1018 1152 2.534298 CGATGCAGATCTTCGTGAAGT 58.466 47.619 9.29 0.00 39.38 3.01
1031 1165 4.452733 GAAGTCGCTGACCGGGGG 62.453 72.222 6.32 0.00 37.59 5.40
1060 1194 2.359975 TCGAGGTCGAGAGCTGCA 60.360 61.111 9.71 0.00 44.22 4.41
1235 1549 1.409790 TCCGTGACGACCTTTTCTTGA 59.590 47.619 6.54 0.00 0.00 3.02
1246 1561 7.639945 ACGACCTTTTCTTGAGTTAGAAAATG 58.360 34.615 10.82 10.66 46.99 2.32
1385 1757 2.732412 TCCTCTGTTTCTTGCTCGAG 57.268 50.000 8.45 8.45 0.00 4.04
1411 1873 1.333619 AGTTTGTGGTGCTAAACTGCG 59.666 47.619 0.00 0.00 43.38 5.18
1412 1874 0.665835 TTTGTGGTGCTAAACTGCGG 59.334 50.000 0.00 0.00 35.36 5.69
1413 1875 0.179043 TTGTGGTGCTAAACTGCGGA 60.179 50.000 0.00 0.00 35.36 5.54
1416 1878 2.474712 GTGCTAAACTGCGGACGC 59.525 61.111 10.13 10.13 42.35 5.19
1667 2146 4.116961 GTGTGCCGCAAGTATGTTCTATA 58.883 43.478 0.00 0.00 0.00 1.31
1668 2147 4.750098 GTGTGCCGCAAGTATGTTCTATAT 59.250 41.667 0.00 0.00 0.00 0.86
1702 2607 7.093201 ACCATTTCTTTCACTATGCATGGATTT 60.093 33.333 17.90 0.00 35.02 2.17
2242 3866 5.893897 TCTGTTGCATGCATGTTTGTATA 57.106 34.783 26.79 0.00 0.00 1.47
2305 3929 8.345565 GTGAATTGTGATGTTTCTCTTGTACTT 58.654 33.333 0.00 0.00 0.00 2.24
2318 3942 5.055265 TCTTGTACTTTGTTTGATGGGGA 57.945 39.130 0.00 0.00 0.00 4.81
2319 3943 5.640147 TCTTGTACTTTGTTTGATGGGGAT 58.360 37.500 0.00 0.00 0.00 3.85
2320 3944 5.476599 TCTTGTACTTTGTTTGATGGGGATG 59.523 40.000 0.00 0.00 0.00 3.51
2360 3984 6.017211 TCATATCTCCATGTGGTTTGGATT 57.983 37.500 0.00 0.00 42.26 3.01
2438 4402 7.700656 CGGTGTTTCGCATATGTAGATCATATA 59.299 37.037 4.29 0.00 44.90 0.86
2476 4440 4.411212 GGACCCAGGGAACTAGCTTATTAA 59.589 45.833 14.54 0.00 40.21 1.40
2591 4566 7.917505 GGATGTCTATTAAAGCTTGTGAATTGG 59.082 37.037 0.00 0.00 0.00 3.16
2595 4570 8.131731 GTCTATTAAAGCTTGTGAATTGGGATC 58.868 37.037 0.00 0.00 0.00 3.36
2628 4862 4.991776 TGTGTGGTTAATTTGGATCCAGA 58.008 39.130 15.53 11.56 0.00 3.86
2748 4982 5.050091 CGAATTGTGATGTTAGGCTGGATAC 60.050 44.000 0.00 0.00 0.00 2.24
2825 5075 3.893326 TGGGGATCGATGCATATGTAG 57.107 47.619 19.14 0.00 0.00 2.74
2841 5091 7.341256 TGCATATGTAGATCATATCTCTCTGCA 59.659 37.037 4.29 7.16 44.90 4.41
3022 5975 2.750166 TGTTTCTTTTGTGAGCCGTTCA 59.250 40.909 0.00 0.00 0.00 3.18
3056 6010 6.481313 GCATGGATGCGTATGTAGATCATATT 59.519 38.462 0.00 0.00 44.67 1.28
3058 6012 9.533253 CATGGATGCGTATGTAGATCATATTTA 57.467 33.333 0.00 0.00 40.54 1.40
3070 6024 9.679661 TGTAGATCATATTTATGTGTGGTTTGT 57.320 29.630 0.00 0.00 35.26 2.83
3071 6025 9.935682 GTAGATCATATTTATGTGTGGTTTGTG 57.064 33.333 0.00 0.00 35.26 3.33
3073 6027 9.023962 AGATCATATTTATGTGTGGTTTGTGTT 57.976 29.630 0.00 0.00 35.26 3.32
3080 6254 7.575414 TTATGTGTGGTTTGTGTTGAGTATT 57.425 32.000 0.00 0.00 0.00 1.89
3081 6255 8.678593 TTATGTGTGGTTTGTGTTGAGTATTA 57.321 30.769 0.00 0.00 0.00 0.98
3082 6256 7.759489 ATGTGTGGTTTGTGTTGAGTATTAT 57.241 32.000 0.00 0.00 0.00 1.28
3086 6260 8.296713 GTGTGGTTTGTGTTGAGTATTATGATT 58.703 33.333 0.00 0.00 0.00 2.57
3087 6261 9.508642 TGTGGTTTGTGTTGAGTATTATGATTA 57.491 29.630 0.00 0.00 0.00 1.75
3120 6329 7.343357 AGATAGATAGCGTAGGATCTAGCTTT 58.657 38.462 0.00 3.53 44.88 3.51
3121 6330 8.487848 AGATAGATAGCGTAGGATCTAGCTTTA 58.512 37.037 0.00 0.00 44.88 1.85
3122 6331 6.746745 AGATAGCGTAGGATCTAGCTTTAC 57.253 41.667 0.00 3.93 40.73 2.01
3123 6332 6.478129 AGATAGCGTAGGATCTAGCTTTACT 58.522 40.000 0.00 0.00 40.73 2.24
3528 7355 3.706594 TGAGGTCTACTAGCTTGAATGGG 59.293 47.826 1.04 0.00 35.60 4.00
3529 7356 3.707102 GAGGTCTACTAGCTTGAATGGGT 59.293 47.826 1.04 0.00 35.60 4.51
3530 7357 4.880164 AGGTCTACTAGCTTGAATGGGTA 58.120 43.478 1.04 0.00 29.36 3.69
3531 7358 5.468658 AGGTCTACTAGCTTGAATGGGTAT 58.531 41.667 1.04 0.00 29.36 2.73
3607 7436 3.149196 TGGTTGAATCAGGTTTCTCAGC 58.851 45.455 0.00 0.00 0.00 4.26
3753 7689 5.716094 CATCTGCATGGAAAACAGAATTGA 58.284 37.500 4.40 0.00 43.23 2.57
3830 7813 4.819105 TCATAGATGAAGTTTCCACCGT 57.181 40.909 0.00 0.00 33.08 4.83
3831 7814 4.503910 TCATAGATGAAGTTTCCACCGTG 58.496 43.478 0.00 0.00 33.08 4.94
3832 7815 4.221924 TCATAGATGAAGTTTCCACCGTGA 59.778 41.667 0.00 0.00 33.08 4.35
3833 7816 2.767505 AGATGAAGTTTCCACCGTGAC 58.232 47.619 0.00 0.00 0.00 3.67
3834 7817 2.368875 AGATGAAGTTTCCACCGTGACT 59.631 45.455 0.00 0.00 0.00 3.41
3835 7818 2.234300 TGAAGTTTCCACCGTGACTC 57.766 50.000 0.00 0.00 0.00 3.36
3836 7819 1.202604 TGAAGTTTCCACCGTGACTCC 60.203 52.381 0.00 0.00 0.00 3.85
3837 7820 0.249741 AAGTTTCCACCGTGACTCCG 60.250 55.000 0.00 0.00 0.00 4.63
3857 7840 0.686224 TCGTCCACCGGGTACATTTT 59.314 50.000 6.32 0.00 37.11 1.82
3864 7847 1.271707 ACCGGGTACATTTTGTCCCAG 60.272 52.381 6.32 6.47 37.48 4.45
4207 8288 2.091885 GGGATCAGGGACCTGCATTTTA 60.092 50.000 13.51 0.00 43.31 1.52
4294 8391 3.083293 GAGAACGAAGTAGACCCTCACT 58.917 50.000 0.00 0.00 45.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.806654 AGGTTACAAAGGCAATGTGATTT 57.193 34.783 5.56 0.00 32.27 2.17
2 3 5.304101 TGAAGGTTACAAAGGCAATGTGATT 59.696 36.000 5.56 0.00 32.27 2.57
6 7 4.037923 CAGTGAAGGTTACAAAGGCAATGT 59.962 41.667 0.87 0.87 34.81 2.71
7 8 4.278170 TCAGTGAAGGTTACAAAGGCAATG 59.722 41.667 0.00 0.00 0.00 2.82
8 9 4.469657 TCAGTGAAGGTTACAAAGGCAAT 58.530 39.130 0.00 0.00 0.00 3.56
9 10 3.892284 TCAGTGAAGGTTACAAAGGCAA 58.108 40.909 0.00 0.00 0.00 4.52
10 11 3.569194 TCAGTGAAGGTTACAAAGGCA 57.431 42.857 0.00 0.00 0.00 4.75
11 12 4.082733 GGATTCAGTGAAGGTTACAAAGGC 60.083 45.833 11.91 0.00 0.00 4.35
12 13 5.070001 TGGATTCAGTGAAGGTTACAAAGG 58.930 41.667 11.91 0.00 0.00 3.11
13 14 6.615088 CATGGATTCAGTGAAGGTTACAAAG 58.385 40.000 11.91 0.00 0.00 2.77
14 15 5.048083 GCATGGATTCAGTGAAGGTTACAAA 60.048 40.000 11.91 0.00 0.00 2.83
15 16 4.458989 GCATGGATTCAGTGAAGGTTACAA 59.541 41.667 11.91 0.00 0.00 2.41
16 17 4.009675 GCATGGATTCAGTGAAGGTTACA 58.990 43.478 11.91 1.93 0.00 2.41
17 18 4.265073 AGCATGGATTCAGTGAAGGTTAC 58.735 43.478 11.91 0.00 0.00 2.50
18 19 4.574674 AGCATGGATTCAGTGAAGGTTA 57.425 40.909 11.91 0.00 0.00 2.85
19 20 3.446442 AGCATGGATTCAGTGAAGGTT 57.554 42.857 11.91 0.00 0.00 3.50
20 21 3.087031 CAAGCATGGATTCAGTGAAGGT 58.913 45.455 11.91 0.00 0.00 3.50
21 22 3.087031 ACAAGCATGGATTCAGTGAAGG 58.913 45.455 11.91 0.03 0.00 3.46
22 23 4.482386 CAACAAGCATGGATTCAGTGAAG 58.518 43.478 11.91 0.00 0.00 3.02
23 24 3.305539 GCAACAAGCATGGATTCAGTGAA 60.306 43.478 8.27 8.27 44.79 3.18
24 25 2.229543 GCAACAAGCATGGATTCAGTGA 59.770 45.455 0.00 0.00 44.79 3.41
25 26 2.602878 GCAACAAGCATGGATTCAGTG 58.397 47.619 0.00 0.00 44.79 3.66
45 46 3.072468 CAGGTTGGCAGCATGGGG 61.072 66.667 8.17 0.00 35.86 4.96
46 47 2.283388 ACAGGTTGGCAGCATGGG 60.283 61.111 19.68 0.00 35.86 4.00
47 48 1.466025 AACACAGGTTGGCAGCATGG 61.466 55.000 19.68 11.08 35.46 3.66
48 49 2.043625 AACACAGGTTGGCAGCATG 58.956 52.632 14.43 14.43 35.46 4.06
49 50 4.605064 AACACAGGTTGGCAGCAT 57.395 50.000 3.14 0.00 35.46 3.79
60 61 5.934043 TGAAACTCCTGTATGATCAACACAG 59.066 40.000 24.08 24.08 39.50 3.66
61 62 5.863965 TGAAACTCCTGTATGATCAACACA 58.136 37.500 0.00 6.42 0.00 3.72
62 63 6.372659 ACATGAAACTCCTGTATGATCAACAC 59.627 38.462 0.00 1.32 0.00 3.32
63 64 6.475504 ACATGAAACTCCTGTATGATCAACA 58.524 36.000 0.00 5.08 0.00 3.33
64 65 6.992063 ACATGAAACTCCTGTATGATCAAC 57.008 37.500 0.00 0.12 0.00 3.18
65 66 7.167535 TGAACATGAAACTCCTGTATGATCAA 58.832 34.615 0.00 0.00 30.82 2.57
66 67 6.710278 TGAACATGAAACTCCTGTATGATCA 58.290 36.000 0.00 0.00 31.14 2.92
67 68 7.255035 CCATGAACATGAAACTCCTGTATGATC 60.255 40.741 15.21 0.00 41.20 2.92
68 69 6.544931 CCATGAACATGAAACTCCTGTATGAT 59.455 38.462 15.21 0.00 41.20 2.45
69 70 5.882000 CCATGAACATGAAACTCCTGTATGA 59.118 40.000 15.21 0.00 41.20 2.15
70 71 5.449588 GCCATGAACATGAAACTCCTGTATG 60.450 44.000 15.21 0.00 41.20 2.39
71 72 4.641989 GCCATGAACATGAAACTCCTGTAT 59.358 41.667 15.21 0.00 41.20 2.29
72 73 4.009675 GCCATGAACATGAAACTCCTGTA 58.990 43.478 15.21 0.00 41.20 2.74
73 74 2.821969 GCCATGAACATGAAACTCCTGT 59.178 45.455 15.21 0.00 41.20 4.00
74 75 3.087031 AGCCATGAACATGAAACTCCTG 58.913 45.455 15.21 0.00 41.20 3.86
75 76 3.087031 CAGCCATGAACATGAAACTCCT 58.913 45.455 15.21 1.05 41.20 3.69
76 77 3.084039 TCAGCCATGAACATGAAACTCC 58.916 45.455 15.21 0.00 41.20 3.85
77 78 4.771590 TTCAGCCATGAACATGAAACTC 57.228 40.909 15.21 0.00 40.54 3.01
78 79 5.733620 ATTTCAGCCATGAACATGAAACT 57.266 34.783 15.21 7.50 45.07 2.66
79 80 5.349543 GGAATTTCAGCCATGAACATGAAAC 59.650 40.000 15.21 5.60 45.07 2.78
80 81 5.481105 GGAATTTCAGCCATGAACATGAAA 58.519 37.500 15.21 13.31 45.07 2.69
81 82 4.081531 GGGAATTTCAGCCATGAACATGAA 60.082 41.667 15.21 3.00 45.07 2.57
82 83 3.448301 GGGAATTTCAGCCATGAACATGA 59.552 43.478 15.21 0.00 45.07 3.07
83 84 3.196039 TGGGAATTTCAGCCATGAACATG 59.804 43.478 7.70 7.70 45.07 3.21
84 85 3.196254 GTGGGAATTTCAGCCATGAACAT 59.804 43.478 0.00 0.00 45.07 2.71
85 86 2.562298 GTGGGAATTTCAGCCATGAACA 59.438 45.455 0.00 0.00 45.07 3.18
86 87 2.415893 CGTGGGAATTTCAGCCATGAAC 60.416 50.000 7.71 0.00 45.07 3.18
87 88 1.818060 CGTGGGAATTTCAGCCATGAA 59.182 47.619 7.71 0.00 43.72 2.57
88 89 1.271871 ACGTGGGAATTTCAGCCATGA 60.272 47.619 16.34 0.00 0.00 3.07
89 90 1.176527 ACGTGGGAATTTCAGCCATG 58.823 50.000 10.61 10.61 0.00 3.66
90 91 1.923356 AACGTGGGAATTTCAGCCAT 58.077 45.000 0.00 0.00 0.00 4.40
91 92 1.611491 GAAACGTGGGAATTTCAGCCA 59.389 47.619 0.00 0.00 35.34 4.75
92 93 1.611491 TGAAACGTGGGAATTTCAGCC 59.389 47.619 0.00 0.00 39.34 4.85
93 94 3.501950 GATGAAACGTGGGAATTTCAGC 58.498 45.455 4.60 1.74 45.38 4.26
94 95 3.119495 GGGATGAAACGTGGGAATTTCAG 60.119 47.826 4.60 0.00 45.38 3.02
95 96 2.823154 GGGATGAAACGTGGGAATTTCA 59.177 45.455 0.94 0.94 46.03 2.69
96 97 2.823154 TGGGATGAAACGTGGGAATTTC 59.177 45.455 0.00 0.00 35.73 2.17
97 98 2.560981 GTGGGATGAAACGTGGGAATTT 59.439 45.455 0.00 0.00 0.00 1.82
98 99 2.167662 GTGGGATGAAACGTGGGAATT 58.832 47.619 0.00 0.00 0.00 2.17
99 100 1.615919 GGTGGGATGAAACGTGGGAAT 60.616 52.381 0.00 0.00 0.00 3.01
100 101 0.250989 GGTGGGATGAAACGTGGGAA 60.251 55.000 0.00 0.00 0.00 3.97
101 102 1.377229 GGTGGGATGAAACGTGGGA 59.623 57.895 0.00 0.00 0.00 4.37
102 103 0.538516 TTGGTGGGATGAAACGTGGG 60.539 55.000 0.00 0.00 0.00 4.61
103 104 0.881118 CTTGGTGGGATGAAACGTGG 59.119 55.000 0.00 0.00 0.00 4.94
104 105 0.881118 CCTTGGTGGGATGAAACGTG 59.119 55.000 0.00 0.00 0.00 4.49
105 106 0.768622 TCCTTGGTGGGATGAAACGT 59.231 50.000 0.00 0.00 36.20 3.99
106 107 1.539827 GTTCCTTGGTGGGATGAAACG 59.460 52.381 0.00 0.00 35.07 3.60
107 108 2.593026 TGTTCCTTGGTGGGATGAAAC 58.407 47.619 0.00 0.00 35.07 2.78
108 109 3.541242 ATGTTCCTTGGTGGGATGAAA 57.459 42.857 0.00 0.00 35.07 2.69
109 110 3.591527 AGTATGTTCCTTGGTGGGATGAA 59.408 43.478 0.00 0.00 35.07 2.57
110 111 3.189606 AGTATGTTCCTTGGTGGGATGA 58.810 45.455 0.00 0.00 35.07 2.92
111 112 3.545703 GAGTATGTTCCTTGGTGGGATG 58.454 50.000 0.00 0.00 35.07 3.51
112 113 2.509964 GGAGTATGTTCCTTGGTGGGAT 59.490 50.000 0.00 0.00 35.07 3.85
113 114 1.913419 GGAGTATGTTCCTTGGTGGGA 59.087 52.381 0.00 0.00 34.27 4.37
114 115 1.064685 GGGAGTATGTTCCTTGGTGGG 60.065 57.143 0.00 0.00 37.40 4.61
115 116 1.633432 TGGGAGTATGTTCCTTGGTGG 59.367 52.381 0.00 0.00 37.40 4.61
116 117 2.571653 TCTGGGAGTATGTTCCTTGGTG 59.428 50.000 0.00 0.00 37.40 4.17
117 118 2.840651 CTCTGGGAGTATGTTCCTTGGT 59.159 50.000 0.00 0.00 37.40 3.67
118 119 2.420687 GCTCTGGGAGTATGTTCCTTGG 60.421 54.545 0.00 0.00 37.40 3.61
119 120 2.503356 AGCTCTGGGAGTATGTTCCTTG 59.497 50.000 0.00 0.00 37.40 3.61
120 121 2.503356 CAGCTCTGGGAGTATGTTCCTT 59.497 50.000 0.00 0.00 37.40 3.36
121 122 2.114616 CAGCTCTGGGAGTATGTTCCT 58.885 52.381 0.00 0.00 37.40 3.36
122 123 1.834263 ACAGCTCTGGGAGTATGTTCC 59.166 52.381 1.66 0.00 31.34 3.62
123 124 2.159028 GGACAGCTCTGGGAGTATGTTC 60.159 54.545 1.66 4.32 33.99 3.18
124 125 1.834263 GGACAGCTCTGGGAGTATGTT 59.166 52.381 1.66 0.00 33.99 2.71
125 126 1.273267 TGGACAGCTCTGGGAGTATGT 60.273 52.381 1.66 7.06 35.56 2.29
126 127 1.489481 TGGACAGCTCTGGGAGTATG 58.511 55.000 1.66 0.00 34.19 2.39
127 128 2.045524 CATGGACAGCTCTGGGAGTAT 58.954 52.381 1.66 0.00 34.19 2.12
128 129 1.489481 CATGGACAGCTCTGGGAGTA 58.511 55.000 1.66 0.00 34.19 2.59
129 130 1.270414 CCATGGACAGCTCTGGGAGT 61.270 60.000 5.56 0.00 34.19 3.85
130 131 1.270414 ACCATGGACAGCTCTGGGAG 61.270 60.000 21.47 0.00 32.89 4.30
131 132 0.842030 AACCATGGACAGCTCTGGGA 60.842 55.000 21.47 0.00 32.89 4.37
132 133 0.679002 CAACCATGGACAGCTCTGGG 60.679 60.000 21.47 0.00 32.89 4.45
133 134 1.310933 GCAACCATGGACAGCTCTGG 61.311 60.000 21.47 0.00 34.19 3.86
134 135 1.642037 CGCAACCATGGACAGCTCTG 61.642 60.000 21.47 4.81 0.00 3.35
135 136 1.376424 CGCAACCATGGACAGCTCT 60.376 57.895 21.47 0.00 0.00 4.09
136 137 2.401766 CCGCAACCATGGACAGCTC 61.402 63.158 21.47 0.02 0.00 4.09
137 138 2.360350 CCGCAACCATGGACAGCT 60.360 61.111 21.47 0.00 0.00 4.24
138 139 4.120331 GCCGCAACCATGGACAGC 62.120 66.667 21.47 17.32 0.00 4.40
139 140 3.443045 GGCCGCAACCATGGACAG 61.443 66.667 21.47 8.63 31.69 3.51
144 145 4.122149 TAGGGGGCCGCAACCATG 62.122 66.667 23.67 0.00 0.00 3.66
145 146 4.123545 GTAGGGGGCCGCAACCAT 62.124 66.667 23.67 5.02 0.00 3.55
147 148 4.796495 CAGTAGGGGGCCGCAACC 62.796 72.222 23.67 9.23 0.00 3.77
148 149 3.971109 GACAGTAGGGGGCCGCAAC 62.971 68.421 23.67 18.12 0.00 4.17
149 150 3.712907 GACAGTAGGGGGCCGCAA 61.713 66.667 23.67 6.03 0.00 4.85
152 153 3.782443 GTGGACAGTAGGGGGCCG 61.782 72.222 0.00 0.00 0.00 6.13
153 154 3.408853 GGTGGACAGTAGGGGGCC 61.409 72.222 0.00 0.00 0.00 5.80
154 155 3.782443 CGGTGGACAGTAGGGGGC 61.782 72.222 0.00 0.00 0.00 5.80
155 156 3.081409 CCGGTGGACAGTAGGGGG 61.081 72.222 0.00 0.00 0.00 5.40
156 157 3.782443 GCCGGTGGACAGTAGGGG 61.782 72.222 1.90 0.00 0.00 4.79
157 158 3.000819 TGCCGGTGGACAGTAGGG 61.001 66.667 1.90 0.00 0.00 3.53
158 159 0.968901 TACTGCCGGTGGACAGTAGG 60.969 60.000 13.68 0.00 45.09 3.18
159 160 2.575108 TACTGCCGGTGGACAGTAG 58.425 57.895 13.68 0.00 45.09 2.57
160 161 0.968901 CCTACTGCCGGTGGACAGTA 60.969 60.000 15.96 15.96 45.09 2.74
162 163 2.579201 CCTACTGCCGGTGGACAG 59.421 66.667 1.90 4.01 39.86 3.51
163 164 3.000819 CCCTACTGCCGGTGGACA 61.001 66.667 1.90 0.00 0.00 4.02
164 165 3.782443 CCCCTACTGCCGGTGGAC 61.782 72.222 1.90 0.00 0.00 4.02
165 166 3.976490 CTCCCCTACTGCCGGTGGA 62.976 68.421 1.90 0.00 0.00 4.02
166 167 3.470888 CTCCCCTACTGCCGGTGG 61.471 72.222 1.90 0.00 0.00 4.61
167 168 2.240162 GAACTCCCCTACTGCCGGTG 62.240 65.000 1.90 0.00 0.00 4.94
168 169 1.988406 GAACTCCCCTACTGCCGGT 60.988 63.158 1.90 0.00 0.00 5.28
169 170 2.901042 GAACTCCCCTACTGCCGG 59.099 66.667 0.00 0.00 0.00 6.13
170 171 2.494918 CGAACTCCCCTACTGCCG 59.505 66.667 0.00 0.00 0.00 5.69
171 172 2.187163 GCGAACTCCCCTACTGCC 59.813 66.667 0.00 0.00 0.00 4.85
172 173 1.142097 GAGCGAACTCCCCTACTGC 59.858 63.158 0.00 0.00 36.90 4.40
173 174 1.950909 CTAGAGCGAACTCCCCTACTG 59.049 57.143 0.00 0.00 44.65 2.74
174 175 1.565288 ACTAGAGCGAACTCCCCTACT 59.435 52.381 0.00 0.00 44.65 2.57
175 176 2.055684 ACTAGAGCGAACTCCCCTAC 57.944 55.000 0.00 0.00 44.65 3.18
176 177 2.822707 AACTAGAGCGAACTCCCCTA 57.177 50.000 0.00 0.00 44.65 3.53
177 178 2.241685 TCTAACTAGAGCGAACTCCCCT 59.758 50.000 0.00 0.00 44.65 4.79
178 179 2.619646 CTCTAACTAGAGCGAACTCCCC 59.380 54.545 0.00 0.00 44.65 4.81
179 180 3.974871 CTCTAACTAGAGCGAACTCCC 57.025 52.381 0.00 0.00 44.65 4.30
188 189 4.977256 AGCCACACGCACTCTAACTAGAG 61.977 52.174 11.46 11.46 44.55 2.43
189 190 1.201647 GCCACACGCACTCTAACTAGA 59.798 52.381 0.00 0.00 37.47 2.43
190 191 1.202582 AGCCACACGCACTCTAACTAG 59.797 52.381 0.00 0.00 41.38 2.57
191 192 1.254026 AGCCACACGCACTCTAACTA 58.746 50.000 0.00 0.00 41.38 2.24
192 193 0.393077 AAGCCACACGCACTCTAACT 59.607 50.000 0.00 0.00 41.38 2.24
193 194 1.226746 AAAGCCACACGCACTCTAAC 58.773 50.000 0.00 0.00 41.38 2.34
202 203 3.185797 GGAACTACAACTAAAGCCACACG 59.814 47.826 0.00 0.00 0.00 4.49
212 213 9.537852 TCAGGTCTTAATTAGGAACTACAACTA 57.462 33.333 14.23 0.00 42.67 2.24
266 267 1.831580 ATGAGCAAAAGAGAGGCCAC 58.168 50.000 5.01 0.00 0.00 5.01
381 383 9.630098 GGTGCTATTTATCATATGAAAATGTGG 57.370 33.333 22.55 16.83 0.00 4.17
475 477 9.449719 CTTACATTTGTTTACAGAGGGAGTAAT 57.550 33.333 0.00 0.00 32.07 1.89
477 479 8.197592 TCTTACATTTGTTTACAGAGGGAGTA 57.802 34.615 0.00 0.00 0.00 2.59
478 480 7.074653 TCTTACATTTGTTTACAGAGGGAGT 57.925 36.000 0.00 0.00 0.00 3.85
479 481 7.118390 CACTCTTACATTTGTTTACAGAGGGAG 59.882 40.741 0.00 0.00 0.00 4.30
480 482 6.934645 CACTCTTACATTTGTTTACAGAGGGA 59.065 38.462 0.00 0.00 0.00 4.20
481 483 6.710744 ACACTCTTACATTTGTTTACAGAGGG 59.289 38.462 0.00 0.00 0.00 4.30
482 484 7.730364 ACACTCTTACATTTGTTTACAGAGG 57.270 36.000 0.00 0.00 0.00 3.69
490 492 9.561069 AGTGATCTAAACACTCTTACATTTGTT 57.439 29.630 0.00 0.00 43.84 2.83
527 529 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
528 530 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
529 531 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
530 532 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
531 533 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
532 534 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
533 535 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
534 536 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
535 537 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
536 538 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
537 539 8.518702 GGTACTCCCTCCGTAAACTAATATAAG 58.481 40.741 0.00 0.00 0.00 1.73
538 540 8.004215 TGGTACTCCCTCCGTAAACTAATATAA 58.996 37.037 0.00 0.00 0.00 0.98
539 541 7.526041 TGGTACTCCCTCCGTAAACTAATATA 58.474 38.462 0.00 0.00 0.00 0.86
540 542 6.376248 TGGTACTCCCTCCGTAAACTAATAT 58.624 40.000 0.00 0.00 0.00 1.28
541 543 5.765510 TGGTACTCCCTCCGTAAACTAATA 58.234 41.667 0.00 0.00 0.00 0.98
542 544 4.613437 TGGTACTCCCTCCGTAAACTAAT 58.387 43.478 0.00 0.00 0.00 1.73
543 545 4.046286 TGGTACTCCCTCCGTAAACTAA 57.954 45.455 0.00 0.00 0.00 2.24
544 546 3.737559 TGGTACTCCCTCCGTAAACTA 57.262 47.619 0.00 0.00 0.00 2.24
545 547 2.610438 TGGTACTCCCTCCGTAAACT 57.390 50.000 0.00 0.00 0.00 2.66
546 548 3.900966 ATTGGTACTCCCTCCGTAAAC 57.099 47.619 0.00 0.00 0.00 2.01
547 549 4.914177 AAATTGGTACTCCCTCCGTAAA 57.086 40.909 0.00 0.00 0.00 2.01
548 550 6.564557 AATAAATTGGTACTCCCTCCGTAA 57.435 37.500 0.00 0.00 0.00 3.18
549 551 6.156602 TCAAATAAATTGGTACTCCCTCCGTA 59.843 38.462 0.00 0.00 39.62 4.02
550 552 5.045432 TCAAATAAATTGGTACTCCCTCCGT 60.045 40.000 0.00 0.00 39.62 4.69
551 553 5.433526 TCAAATAAATTGGTACTCCCTCCG 58.566 41.667 0.00 0.00 39.62 4.63
552 554 7.898014 AATCAAATAAATTGGTACTCCCTCC 57.102 36.000 0.00 0.00 39.62 4.30
553 555 9.586435 CAAAATCAAATAAATTGGTACTCCCTC 57.414 33.333 0.00 0.00 39.62 4.30
554 556 9.320295 TCAAAATCAAATAAATTGGTACTCCCT 57.680 29.630 0.00 0.00 39.62 4.20
555 557 9.586435 CTCAAAATCAAATAAATTGGTACTCCC 57.414 33.333 0.00 0.00 39.62 4.30
573 575 8.738645 ATATCTGGTAACTCCAACTCAAAATC 57.261 34.615 0.00 0.00 46.59 2.17
593 595 9.725019 TGAGCATTTAATGGACGATTAATATCT 57.275 29.630 7.08 2.23 36.58 1.98
609 611 5.577554 TCGCAGTATACGTTTGAGCATTTAA 59.422 36.000 0.00 0.00 0.00 1.52
610 612 5.103687 TCGCAGTATACGTTTGAGCATTTA 58.896 37.500 0.00 0.00 0.00 1.40
624 626 4.095932 CACGGCTCCTATATTCGCAGTATA 59.904 45.833 0.00 0.00 30.03 1.47
772 840 2.489329 CACTCTACAGTTTTGGCCCATG 59.511 50.000 0.00 0.00 0.00 3.66
832 930 2.443016 CTAGCGAGTGAGGCCCCT 60.443 66.667 0.00 0.00 0.00 4.79
888 993 1.267261 TCTTTATAGAGCGAGCGAGCC 59.733 52.381 2.87 0.00 38.01 4.70
889 994 2.580589 CTCTTTATAGAGCGAGCGAGC 58.419 52.381 0.00 0.00 41.38 5.03
951 1069 3.894947 GCTCTCCTCTCGCCGGAC 61.895 72.222 5.05 0.00 0.00 4.79
997 1131 1.257415 CTTCACGAAGATCTGCATCGC 59.743 52.381 13.82 0.00 41.10 4.58
1031 1165 2.105128 CCTCGAGCGTCATGGTCC 59.895 66.667 6.99 0.00 42.19 4.46
1235 1549 6.151817 GGAGAAAGCCATGACATTTTCTAACT 59.848 38.462 11.74 2.25 39.31 2.24
1246 1561 1.576356 CTAGCGGAGAAAGCCATGAC 58.424 55.000 0.00 0.00 34.64 3.06
1385 1757 5.886992 AGTTTAGCACCACAAACTGTAAAC 58.113 37.500 0.00 0.00 42.03 2.01
1409 1871 2.811317 CCAAGAGACAGCGTCCGC 60.811 66.667 2.94 2.94 42.33 5.54
1410 1872 2.771763 AAGCCAAGAGACAGCGTCCG 62.772 60.000 5.29 0.00 32.18 4.79
1411 1873 1.004440 AAGCCAAGAGACAGCGTCC 60.004 57.895 5.29 0.00 32.18 4.79
1412 1874 0.319900 TGAAGCCAAGAGACAGCGTC 60.320 55.000 1.15 1.15 35.86 5.19
1413 1875 0.106708 TTGAAGCCAAGAGACAGCGT 59.893 50.000 0.00 0.00 0.00 5.07
1416 1878 4.260538 GCGATTATTGAAGCCAAGAGACAG 60.261 45.833 0.00 0.00 35.48 3.51
1420 1888 3.003068 CCTGCGATTATTGAAGCCAAGAG 59.997 47.826 0.00 0.00 35.48 2.85
1422 1890 2.684881 ACCTGCGATTATTGAAGCCAAG 59.315 45.455 0.00 0.00 35.48 3.61
1667 2146 5.397360 AGTGAAAGAAATGGTCCAAGGAAT 58.603 37.500 0.00 0.00 0.00 3.01
1668 2147 4.803452 AGTGAAAGAAATGGTCCAAGGAA 58.197 39.130 0.00 0.00 0.00 3.36
1702 2607 0.170784 CATGCATGTAACAGCGGCAA 59.829 50.000 18.91 0.00 38.08 4.52
2267 3891 8.743085 ACATCACAATTCACAAGCTTCTATAT 57.257 30.769 0.00 0.00 0.00 0.86
2268 3892 8.565896 AACATCACAATTCACAAGCTTCTATA 57.434 30.769 0.00 0.00 0.00 1.31
2269 3893 7.458409 AACATCACAATTCACAAGCTTCTAT 57.542 32.000 0.00 0.00 0.00 1.98
2270 3894 6.882610 AACATCACAATTCACAAGCTTCTA 57.117 33.333 0.00 0.00 0.00 2.10
2305 3929 3.069872 GCATATGCATCCCCATCAAACAA 59.930 43.478 22.84 0.00 41.59 2.83
2360 3984 4.585162 GCTAATGAGCTAGTAGTTCCCTGA 59.415 45.833 11.08 0.00 45.98 3.86
2438 4402 2.568623 GGTCCAAACCACACAGAGAT 57.431 50.000 0.00 0.00 45.68 2.75
2591 4566 5.480642 ACCACACAGAGATATGATGATCC 57.519 43.478 0.00 0.00 0.00 3.36
2595 4570 8.347771 CCAAATTAACCACACAGAGATATGATG 58.652 37.037 0.00 0.00 0.00 3.07
2825 5075 7.975616 GGATCTAAACTGCAGAGAGATATGATC 59.024 40.741 23.35 18.27 0.00 2.92
3056 6010 7.575414 AATACTCAACACAAACCACACATAA 57.425 32.000 0.00 0.00 0.00 1.90
3058 6012 7.446931 TCATAATACTCAACACAAACCACACAT 59.553 33.333 0.00 0.00 0.00 3.21
3087 6261 9.127277 GATCCTACGCTATCTATCTTTCCTAAT 57.873 37.037 0.00 0.00 0.00 1.73
3088 6262 8.330247 AGATCCTACGCTATCTATCTTTCCTAA 58.670 37.037 0.00 0.00 30.65 2.69
3102 6276 6.544931 TGAAAGTAAAGCTAGATCCTACGCTA 59.455 38.462 0.00 0.00 31.48 4.26
3104 6278 5.589192 TGAAAGTAAAGCTAGATCCTACGC 58.411 41.667 0.00 0.00 0.00 4.42
3105 6279 7.426410 TGATGAAAGTAAAGCTAGATCCTACG 58.574 38.462 0.00 0.00 0.00 3.51
3156 6816 6.561519 ACCAGTACTTATTGTGATAAGGCT 57.438 37.500 10.05 5.76 45.90 4.58
3177 6838 8.142551 AGTTAGGATATAATCTTGTGAACGACC 58.857 37.037 0.00 0.00 0.00 4.79
3207 6965 4.221262 AGCACCTGTAATGCAAAATCATGT 59.779 37.500 0.00 0.00 45.92 3.21
3353 7116 3.305720 TCCCAGTTAATCCAGCTATCGT 58.694 45.455 0.00 0.00 0.00 3.73
3528 7355 9.703892 AGAGCATTACTTGACTTCATCATATAC 57.296 33.333 0.00 0.00 37.11 1.47
3530 7357 9.053840 CAAGAGCATTACTTGACTTCATCATAT 57.946 33.333 0.00 0.00 44.92 1.78
3531 7358 7.011763 GCAAGAGCATTACTTGACTTCATCATA 59.988 37.037 11.08 0.00 44.92 2.15
3607 7436 7.339212 TCCATGTAATTATCAGAAAACACTGGG 59.661 37.037 0.00 0.00 38.31 4.45
3716 7648 1.405933 GCAGATGGCATTTGGTTTCCC 60.406 52.381 18.43 0.00 43.97 3.97
3749 7685 6.751157 TGCAATGTGATTTCAGAACTTCAAT 58.249 32.000 0.00 0.00 0.00 2.57
3753 7689 6.518493 ACAATGCAATGTGATTTCAGAACTT 58.482 32.000 6.61 0.00 30.82 2.66
3820 7795 1.068585 ACGGAGTCACGGTGGAAAC 59.931 57.895 8.50 0.00 29.74 2.78
3864 7847 1.408453 CGGAGTATGGTCCCTTCCCC 61.408 65.000 0.00 0.00 32.26 4.81
4207 8288 4.580580 GGTTCTCCTGTGATTGTGAAACTT 59.419 41.667 0.00 0.00 38.04 2.66
4294 8391 9.131791 AGCAAGACTTATTTCTGTTTCCTTAAA 57.868 29.630 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.