Multiple sequence alignment - TraesCS2B01G480200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G480200 chr2B 100.000 9589 0 0 1 9589 677800362 677809950 0.000000e+00 17708.0
1 TraesCS2B01G480200 chr2B 90.688 494 26 8 8973 9458 677852075 677852556 2.920000e-179 640.0
2 TraesCS2B01G480200 chr2B 80.863 533 53 29 7841 8349 677850975 677851482 3.270000e-99 374.0
3 TraesCS2B01G480200 chr2B 80.236 339 45 13 9089 9423 677877081 677877401 1.610000e-57 235.0
4 TraesCS2B01G480200 chr2B 95.098 102 4 1 9487 9587 677852555 677852656 9.970000e-35 159.0
5 TraesCS2B01G480200 chr2B 92.233 103 5 1 9486 9588 677877427 677877526 1.000000e-29 143.0
6 TraesCS2B01G480200 chr2B 90.385 104 7 2 5150 5250 794694292 794694189 6.040000e-27 134.0
7 TraesCS2B01G480200 chr2B 90.385 104 7 2 5150 5250 794803193 794803090 6.040000e-27 134.0
8 TraesCS2B01G480200 chr2B 92.308 39 3 0 5877 5915 383562673 383562711 1.000000e-03 56.5
9 TraesCS2B01G480200 chr2A 94.198 2775 117 21 3260 6020 705875205 705877949 0.000000e+00 4193.0
10 TraesCS2B01G480200 chr2A 90.921 2313 139 23 921 3205 705872934 705875203 0.000000e+00 3042.0
11 TraesCS2B01G480200 chr2A 91.793 1840 87 28 6142 7959 705877946 705879743 0.000000e+00 2503.0
12 TraesCS2B01G480200 chr2A 85.625 640 30 16 8973 9589 705880896 705881496 4.920000e-172 616.0
13 TraesCS2B01G480200 chr2A 83.811 593 55 26 7963 8518 705879800 705880388 8.530000e-145 525.0
14 TraesCS2B01G480200 chr2A 80.712 534 60 25 9061 9588 705917667 705918163 9.090000e-100 375.0
15 TraesCS2B01G480200 chr2A 95.652 46 1 1 3202 3247 58015407 58015451 1.340000e-08 73.1
16 TraesCS2B01G480200 chr2D 94.783 1955 67 11 3260 5203 565475410 565477340 0.000000e+00 3013.0
17 TraesCS2B01G480200 chr2D 88.889 2529 139 62 6142 8581 565478096 565480571 0.000000e+00 2983.0
18 TraesCS2B01G480200 chr2D 89.822 1572 81 22 771 2301 565473051 565474584 0.000000e+00 1943.0
19 TraesCS2B01G480200 chr2D 95.078 833 29 5 2376 3205 565474585 565475408 0.000000e+00 1301.0
20 TraesCS2B01G480200 chr2D 96.199 763 27 2 5259 6020 565477338 565478099 0.000000e+00 1247.0
21 TraesCS2B01G480200 chr2D 90.797 728 66 1 1 727 88121932 88122659 0.000000e+00 972.0
22 TraesCS2B01G480200 chr2D 88.567 726 77 5 2 724 414408531 414407809 0.000000e+00 876.0
23 TraesCS2B01G480200 chr2D 83.861 632 46 35 8973 9589 565483354 565483944 1.410000e-152 551.0
24 TraesCS2B01G480200 chr2D 81.605 511 55 22 9089 9588 565585431 565585913 4.200000e-103 387.0
25 TraesCS2B01G480200 chr2D 85.714 210 18 8 9387 9588 565515850 565516055 2.710000e-50 211.0
26 TraesCS2B01G480200 chr2D 81.290 155 18 8 9192 9343 565515699 565515845 2.190000e-21 115.0
27 TraesCS2B01G480200 chr2D 95.000 40 2 0 8768 8807 565480749 565480788 8.040000e-06 63.9
28 TraesCS2B01G480200 chr3B 94.635 727 35 4 1 725 513714172 513714896 0.000000e+00 1123.0
29 TraesCS2B01G480200 chr3B 86.709 158 18 2 5990 6144 507292495 507292652 1.280000e-38 172.0
30 TraesCS2B01G480200 chr3B 89.565 115 11 1 5906 6020 332931727 332931614 2.790000e-30 145.0
31 TraesCS2B01G480200 chr3D 92.455 729 51 4 1 725 338583729 338583001 0.000000e+00 1038.0
32 TraesCS2B01G480200 chr3D 87.620 727 85 5 2 725 447615765 447616489 0.000000e+00 839.0
33 TraesCS2B01G480200 chr3D 85.970 727 97 5 2 725 496509407 496508683 0.000000e+00 773.0
34 TraesCS2B01G480200 chr3D 89.565 115 11 1 5906 6020 210623458 210623345 2.790000e-30 145.0
35 TraesCS2B01G480200 chr3D 90.816 98 7 2 5164 5261 602205250 602205155 7.820000e-26 130.0
36 TraesCS2B01G480200 chr3D 100.000 28 0 0 5875 5902 254116805 254116778 1.700000e-02 52.8
37 TraesCS2B01G480200 chr7D 90.110 728 70 2 2 728 607078588 607079314 0.000000e+00 944.0
38 TraesCS2B01G480200 chr7D 86.130 584 74 6 143 724 426868471 426869049 2.940000e-174 623.0
39 TraesCS2B01G480200 chr7D 94.118 85 4 1 5166 5250 41146563 41146646 2.810000e-25 128.0
40 TraesCS2B01G480200 chr1A 84.952 731 107 3 2 730 167985997 167985268 0.000000e+00 737.0
41 TraesCS2B01G480200 chr1A 93.182 88 6 0 5163 5250 33225520 33225433 7.820000e-26 130.0
42 TraesCS2B01G480200 chr1A 86.567 67 6 3 661 725 159514530 159514595 4.800000e-08 71.3
43 TraesCS2B01G480200 chr5D 85.027 728 98 8 1 725 35322167 35322886 0.000000e+00 730.0
44 TraesCS2B01G480200 chr7B 84.284 719 106 6 1 717 599767783 599768496 0.000000e+00 695.0
45 TraesCS2B01G480200 chr5B 82.669 727 123 3 2 726 317338370 317339095 8.120000e-180 641.0
46 TraesCS2B01G480200 chr5B 99.231 130 1 0 6015 6144 667604958 667604829 1.610000e-57 235.0
47 TraesCS2B01G480200 chr5B 94.186 86 4 1 5166 5250 704725125 704725040 7.820000e-26 130.0
48 TraesCS2B01G480200 chr4A 88.916 415 38 4 1344 1751 701677923 701678336 1.110000e-138 505.0
49 TraesCS2B01G480200 chr4A 90.152 132 11 2 5905 6036 92731024 92731153 4.600000e-38 171.0
50 TraesCS2B01G480200 chr4A 93.407 91 4 2 5162 5251 586778662 586778573 6.040000e-27 134.0
51 TraesCS2B01G480200 chr7A 88.193 415 41 4 1344 1751 464241224 464240811 1.120000e-133 488.0
52 TraesCS2B01G480200 chr3A 87.740 416 43 4 1343 1751 58630791 58631205 6.740000e-131 479.0
53 TraesCS2B01G480200 chr3A 100.000 28 0 0 5875 5902 335463523 335463550 1.700000e-02 52.8
54 TraesCS2B01G480200 chr6B 81.739 345 39 13 5906 6232 352078921 352079259 5.710000e-67 267.0
55 TraesCS2B01G480200 chr6B 98.485 132 2 0 6015 6146 470915343 470915474 5.790000e-57 233.0
56 TraesCS2B01G480200 chr6B 97.059 136 4 0 6009 6144 209249727 209249862 7.490000e-56 230.0
57 TraesCS2B01G480200 chr6B 90.435 115 10 1 5906 6020 438102952 438103065 6.000000e-32 150.0
58 TraesCS2B01G480200 chr6B 87.952 83 4 4 6153 6231 389234918 389234998 1.030000e-14 93.5
59 TraesCS2B01G480200 chr4D 99.231 130 1 0 6017 6146 614527 614656 1.610000e-57 235.0
60 TraesCS2B01G480200 chr4D 97.761 134 1 2 6017 6149 391290423 391290291 7.490000e-56 230.0
61 TraesCS2B01G480200 chr6D 97.744 133 3 0 6014 6146 52696765 52696633 7.490000e-56 230.0
62 TraesCS2B01G480200 chr6D 99.213 127 1 0 6017 6143 235588461 235588587 7.490000e-56 230.0
63 TraesCS2B01G480200 chr6D 92.174 115 8 1 5906 6020 276144681 276144794 2.770000e-35 161.0
64 TraesCS2B01G480200 chr1D 97.761 134 1 2 6017 6149 127143402 127143270 7.490000e-56 230.0
65 TraesCS2B01G480200 chr1D 90.000 50 4 1 660 709 132205631 132205679 8.040000e-06 63.9
66 TraesCS2B01G480200 chr6A 91.304 115 9 1 5906 6020 399836706 399836593 1.290000e-33 156.0
67 TraesCS2B01G480200 chr4B 89.320 103 10 1 5152 5254 67734098 67733997 2.810000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G480200 chr2B 677800362 677809950 9588 False 17708.000000 17708 100.000000 1 9589 1 chr2B.!!$F2 9588
1 TraesCS2B01G480200 chr2B 677850975 677852656 1681 False 391.000000 640 88.883000 7841 9587 3 chr2B.!!$F3 1746
2 TraesCS2B01G480200 chr2A 705872934 705881496 8562 False 2175.800000 4193 89.269600 921 9589 5 chr2A.!!$F3 8668
3 TraesCS2B01G480200 chr2D 565473051 565483944 10893 False 1585.985714 3013 91.947429 771 9589 7 chr2D.!!$F3 8818
4 TraesCS2B01G480200 chr2D 88121932 88122659 727 False 972.000000 972 90.797000 1 727 1 chr2D.!!$F1 726
5 TraesCS2B01G480200 chr2D 414407809 414408531 722 True 876.000000 876 88.567000 2 724 1 chr2D.!!$R1 722
6 TraesCS2B01G480200 chr3B 513714172 513714896 724 False 1123.000000 1123 94.635000 1 725 1 chr3B.!!$F2 724
7 TraesCS2B01G480200 chr3D 338583001 338583729 728 True 1038.000000 1038 92.455000 1 725 1 chr3D.!!$R3 724
8 TraesCS2B01G480200 chr3D 447615765 447616489 724 False 839.000000 839 87.620000 2 725 1 chr3D.!!$F1 723
9 TraesCS2B01G480200 chr3D 496508683 496509407 724 True 773.000000 773 85.970000 2 725 1 chr3D.!!$R4 723
10 TraesCS2B01G480200 chr7D 607078588 607079314 726 False 944.000000 944 90.110000 2 728 1 chr7D.!!$F3 726
11 TraesCS2B01G480200 chr7D 426868471 426869049 578 False 623.000000 623 86.130000 143 724 1 chr7D.!!$F2 581
12 TraesCS2B01G480200 chr1A 167985268 167985997 729 True 737.000000 737 84.952000 2 730 1 chr1A.!!$R2 728
13 TraesCS2B01G480200 chr5D 35322167 35322886 719 False 730.000000 730 85.027000 1 725 1 chr5D.!!$F1 724
14 TraesCS2B01G480200 chr7B 599767783 599768496 713 False 695.000000 695 84.284000 1 717 1 chr7B.!!$F1 716
15 TraesCS2B01G480200 chr5B 317338370 317339095 725 False 641.000000 641 82.669000 2 726 1 chr5B.!!$F1 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.255890 AACTTCCTATGGCCATGCGT 59.744 50.000 29.04 13.91 0.00 5.24 F
659 665 0.893727 TGTCCTGCACTCGCTAGACA 60.894 55.000 0.00 6.17 43.79 3.41 F
1875 1929 0.608130 TGTCCACAACATCCCTCTCG 59.392 55.000 0.00 0.00 31.20 4.04 F
2089 2143 0.600782 GGGTGGCTGTTGCAAATGTG 60.601 55.000 0.00 0.00 41.91 3.21 F
2304 2358 1.039856 GTGGTTGCATGGTGACCTTT 58.960 50.000 2.11 0.00 34.52 3.11 F
4012 4088 1.238439 ACAATGTGTGCCAGTACAGC 58.762 50.000 0.00 0.00 0.00 4.40 F
4198 4275 0.322456 TTCAACTAATGCTGGCGGCT 60.322 50.000 20.66 2.08 42.39 5.52 F
6037 6116 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17 F
6144 6223 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73 F
7904 8023 0.956633 CAACTCAGGTGCTTGCACAT 59.043 50.000 24.34 16.70 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1235 1243 0.107654 GAGCTCCTTACCAACGCCAT 60.108 55.000 0.87 0.0 0.00 4.40 R
1945 1999 0.110373 CCGCAGAACCAAAAGTACGC 60.110 55.000 0.00 0.0 0.00 4.42 R
3317 3374 0.389817 CTCGAAGCACCCATCAACGA 60.390 55.000 0.00 0.0 0.00 3.85 R
3502 3559 1.153289 CCTTGTGATCTCGGGCCAG 60.153 63.158 4.39 0.0 0.00 4.85 R
4198 4275 1.135315 ACCGTAGCGAATGAAGCGTAA 60.135 47.619 0.00 0.0 40.04 3.18 R
4857 4934 0.529337 CCTGGCAGCTCATGTAGTCG 60.529 60.000 9.56 0.0 0.00 4.18 R
6125 6204 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.0 0.00 3.28 R
7128 7214 0.685097 AGTGCGCCAGTCTAAAGGAA 59.315 50.000 4.18 0.0 0.00 3.36 R
8095 8267 0.707616 AGGGTCCTGCACTACTCTCT 59.292 55.000 0.00 0.0 0.00 3.10 R
8769 9046 1.289109 ATACGACGCGCACTTTGCTT 61.289 50.000 5.73 0.0 42.25 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.255890 AACTTCCTATGGCCATGCGT 59.744 50.000 29.04 13.91 0.00 5.24
51 52 4.521146 ACTTCCATGTCTTATTCTGCCAG 58.479 43.478 0.00 0.00 0.00 4.85
102 103 1.378514 CGGTTTGCCCCTATGCAGT 60.379 57.895 0.00 0.00 43.21 4.40
232 234 2.603473 ACCTCGGCCTGCTACACA 60.603 61.111 0.00 0.00 0.00 3.72
286 288 1.625511 TGGTGCAATGTGGTTATGCA 58.374 45.000 0.00 0.00 46.97 3.96
554 560 6.627087 ACTTAGAGATTGGAAGTTGATGGA 57.373 37.500 0.00 0.00 29.02 3.41
594 600 7.654520 AGTTTACAACGCTTTGTGAGAGTATAA 59.345 33.333 18.06 0.00 45.91 0.98
628 634 2.221299 TAGGAGTGGTGGTGGGTGC 61.221 63.158 0.00 0.00 0.00 5.01
659 665 0.893727 TGTCCTGCACTCGCTAGACA 60.894 55.000 0.00 6.17 43.79 3.41
750 757 9.499479 AGAGATGCTCTTATGTATATTTTGGTG 57.501 33.333 0.00 0.00 37.60 4.17
751 758 9.277783 GAGATGCTCTTATGTATATTTTGGTGT 57.722 33.333 0.00 0.00 0.00 4.16
752 759 9.277783 AGATGCTCTTATGTATATTTTGGTGTC 57.722 33.333 0.00 0.00 0.00 3.67
753 760 7.477144 TGCTCTTATGTATATTTTGGTGTCG 57.523 36.000 0.00 0.00 0.00 4.35
754 761 7.045416 TGCTCTTATGTATATTTTGGTGTCGT 58.955 34.615 0.00 0.00 0.00 4.34
755 762 8.198778 TGCTCTTATGTATATTTTGGTGTCGTA 58.801 33.333 0.00 0.00 0.00 3.43
756 763 8.700644 GCTCTTATGTATATTTTGGTGTCGTAG 58.299 37.037 0.00 0.00 0.00 3.51
757 764 9.961265 CTCTTATGTATATTTTGGTGTCGTAGA 57.039 33.333 0.00 0.00 0.00 2.59
895 903 8.700644 CGGATAAAATCATTTCCGAACTAGTAG 58.299 37.037 3.23 0.00 37.85 2.57
997 1005 1.747206 CGTGTCAGAATTCCCATCCCC 60.747 57.143 0.65 0.00 0.00 4.81
1181 1189 2.450243 GACCTCCCCTCCTGGTCA 59.550 66.667 6.52 0.00 46.79 4.02
1183 1191 2.689034 CCTCCCCTCCTGGTCACC 60.689 72.222 0.00 0.00 0.00 4.02
1184 1192 2.122729 CTCCCCTCCTGGTCACCA 59.877 66.667 0.00 0.00 0.00 4.17
1204 1212 2.835895 GCCCTCCTCCTCTCGACC 60.836 72.222 0.00 0.00 0.00 4.79
1233 1241 3.607661 GGGAGCCGGACGATCTCC 61.608 72.222 14.80 14.80 44.28 3.71
1235 1243 1.228184 GGAGCCGGACGATCTCCTA 60.228 63.158 15.62 0.00 42.31 2.94
1293 1301 4.245660 GGATCGATTGTTCTGTGAGTTCA 58.754 43.478 0.00 0.00 0.00 3.18
1297 1305 4.507756 TCGATTGTTCTGTGAGTTCAGTTG 59.492 41.667 0.00 0.00 36.85 3.16
1351 1360 4.688413 TCAGTTTTGTGAAAGTTTGTTGCC 59.312 37.500 0.00 0.00 0.00 4.52
1401 1427 1.825191 CCATTCCCATCCCAGCACG 60.825 63.158 0.00 0.00 0.00 5.34
1475 1501 4.169059 TGATTGCTATTACACCCTGCAT 57.831 40.909 0.00 0.00 33.50 3.96
1514 1541 6.987992 AGTTTCAGTTGTCAGACGGTTATTTA 59.012 34.615 0.00 0.00 0.00 1.40
1557 1584 1.949631 GGCTCCGCCGATTTCTACG 60.950 63.158 0.00 0.00 39.62 3.51
1580 1607 4.649674 GGATCTACAGAATACACCCACTCA 59.350 45.833 0.00 0.00 0.00 3.41
1673 1700 5.273170 CAATGGTATCAAGTTTGTATGGCG 58.727 41.667 0.00 0.00 0.00 5.69
1694 1726 4.395542 GCGTAACCCATGTGTAATTGGTTA 59.604 41.667 4.07 4.07 39.81 2.85
1712 1745 5.179533 TGGTTACGTATTGAGCAAAGCATA 58.820 37.500 0.00 0.00 0.00 3.14
1766 1799 5.061179 TGCAACAGAGGGAGTAGTTTTTAC 58.939 41.667 0.00 0.00 0.00 2.01
1809 1863 6.550938 TGATACATGATGATACCCAGGATC 57.449 41.667 0.00 0.00 0.00 3.36
1822 1876 2.561569 CCAGGATCGACAAACCATACC 58.438 52.381 0.00 0.00 0.00 2.73
1853 1907 4.742012 TCATAGAAGATCCTACTGGACCC 58.258 47.826 0.00 0.00 46.51 4.46
1868 1922 1.523758 GACCCTGTGTCCACAACATC 58.476 55.000 1.30 0.00 41.33 3.06
1874 1928 1.347707 TGTGTCCACAACATCCCTCTC 59.652 52.381 0.00 0.00 40.80 3.20
1875 1929 0.608130 TGTCCACAACATCCCTCTCG 59.392 55.000 0.00 0.00 31.20 4.04
1912 1966 4.479619 GGATAGCAACAAAAGAAGCACAG 58.520 43.478 0.00 0.00 0.00 3.66
1935 1989 4.332543 GCATAGTGTGAATGATCCGTTTGA 59.667 41.667 0.00 0.00 0.00 2.69
1945 1999 2.546368 TGATCCGTTTGAAGTTCAACGG 59.454 45.455 31.88 31.88 44.52 4.44
1987 2041 1.143889 GAACCCATCCAGAGGAATCCC 59.856 57.143 0.00 0.00 34.34 3.85
1992 2046 1.765314 CATCCAGAGGAATCCCGACTT 59.235 52.381 0.00 0.00 34.34 3.01
2005 2059 3.135994 TCCCGACTTTTCAGTGCTAAAC 58.864 45.455 0.00 0.00 31.22 2.01
2046 2100 3.609853 TCAAGAGCATATTGGGTGACAC 58.390 45.455 0.00 0.00 0.00 3.67
2089 2143 0.600782 GGGTGGCTGTTGCAAATGTG 60.601 55.000 0.00 0.00 41.91 3.21
2175 2229 4.399618 GGTATGTCTGTCAGCTAGTCAAGA 59.600 45.833 0.00 0.00 0.00 3.02
2216 2270 6.582295 CACCAAGTAGTTCGAATTCCATTTTG 59.418 38.462 0.00 0.99 0.00 2.44
2231 2285 7.655236 TTCCATTTTGTGACAATTGCATTAG 57.345 32.000 5.05 0.00 0.00 1.73
2304 2358 1.039856 GTGGTTGCATGGTGACCTTT 58.960 50.000 2.11 0.00 34.52 3.11
2346 2400 4.368315 CCTAATGCCCCTTAAATTTTCGC 58.632 43.478 0.00 0.00 0.00 4.70
2370 2424 4.929808 AGTTTAGATGTCAACTAAGGTGCG 59.070 41.667 3.16 0.00 31.20 5.34
2394 2448 6.365789 CGATTATGTTTGTTTGGTTGCAGAAT 59.634 34.615 0.00 0.00 0.00 2.40
2397 2451 8.948631 TTATGTTTGTTTGGTTGCAGAATAAA 57.051 26.923 0.00 0.00 0.00 1.40
2439 2493 8.743099 GCTTACGATTTATGTTTTTGGCTTATC 58.257 33.333 0.00 0.00 0.00 1.75
2440 2494 9.781834 CTTACGATTTATGTTTTTGGCTTATCA 57.218 29.630 0.00 0.00 0.00 2.15
2457 2511 2.947127 TCACATGGTCCATCACACAA 57.053 45.000 0.00 0.00 0.00 3.33
2465 2519 2.756760 GGTCCATCACACAATTGCATCT 59.243 45.455 5.05 0.00 0.00 2.90
2471 2525 4.486125 TCACACAATTGCATCTAGGCTA 57.514 40.909 5.05 0.00 34.04 3.93
2472 2526 5.039920 TCACACAATTGCATCTAGGCTAT 57.960 39.130 5.05 0.00 34.04 2.97
2473 2527 5.059161 TCACACAATTGCATCTAGGCTATC 58.941 41.667 5.05 0.00 34.04 2.08
2474 2528 4.214971 CACACAATTGCATCTAGGCTATCC 59.785 45.833 5.05 0.00 34.04 2.59
2475 2529 3.434641 CACAATTGCATCTAGGCTATCCG 59.565 47.826 5.05 0.00 37.47 4.18
2476 2530 2.393271 ATTGCATCTAGGCTATCCGC 57.607 50.000 0.00 0.00 37.47 5.54
2477 2531 1.342074 TTGCATCTAGGCTATCCGCT 58.658 50.000 0.00 0.00 39.13 5.52
2574 2628 6.691754 TTGTTCAGAAAGTTGTTAGCATCA 57.308 33.333 0.00 0.00 0.00 3.07
2601 2655 3.574284 TTGGATGTTTCATGAAAGCCG 57.426 42.857 21.05 0.00 0.00 5.52
2791 2845 3.861840 TCATGCAGCAAACTAGGAGTAC 58.138 45.455 0.00 0.00 0.00 2.73
3017 3071 4.631813 GTGTTCCAGTTCATGATGAGGTAC 59.368 45.833 0.00 3.68 0.00 3.34
3092 3146 9.883142 ACCACAAAACATTTCTTTATTTCTGAA 57.117 25.926 0.00 0.00 0.00 3.02
3164 3218 2.057137 ACTTCCTTTCTGTTGCTGCA 57.943 45.000 0.00 0.00 0.00 4.41
3193 3250 4.584638 ATTGCAGGGTATACTTCACCAA 57.415 40.909 2.25 1.67 37.84 3.67
3205 3262 8.880750 GGTATACTTCACCAAAATGAACTACTC 58.119 37.037 2.25 0.00 34.84 2.59
3206 3263 7.923414 ATACTTCACCAAAATGAACTACTCC 57.077 36.000 0.00 0.00 34.84 3.85
3207 3264 5.690865 ACTTCACCAAAATGAACTACTCCA 58.309 37.500 0.00 0.00 34.84 3.86
3208 3265 6.306987 ACTTCACCAAAATGAACTACTCCAT 58.693 36.000 0.00 0.00 34.84 3.41
3209 3266 6.431234 ACTTCACCAAAATGAACTACTCCATC 59.569 38.462 0.00 0.00 34.84 3.51
3210 3267 5.253330 TCACCAAAATGAACTACTCCATCC 58.747 41.667 0.00 0.00 0.00 3.51
3211 3268 4.094887 CACCAAAATGAACTACTCCATCCG 59.905 45.833 0.00 0.00 0.00 4.18
3212 3269 4.261801 CCAAAATGAACTACTCCATCCGT 58.738 43.478 0.00 0.00 0.00 4.69
3213 3270 4.332819 CCAAAATGAACTACTCCATCCGTC 59.667 45.833 0.00 0.00 0.00 4.79
3214 3271 3.821421 AATGAACTACTCCATCCGTCC 57.179 47.619 0.00 0.00 0.00 4.79
3215 3272 1.481871 TGAACTACTCCATCCGTCCC 58.518 55.000 0.00 0.00 0.00 4.46
3216 3273 1.272816 TGAACTACTCCATCCGTCCCA 60.273 52.381 0.00 0.00 0.00 4.37
3217 3274 1.829222 GAACTACTCCATCCGTCCCAA 59.171 52.381 0.00 0.00 0.00 4.12
3218 3275 1.946984 ACTACTCCATCCGTCCCAAA 58.053 50.000 0.00 0.00 0.00 3.28
3219 3276 2.262637 ACTACTCCATCCGTCCCAAAA 58.737 47.619 0.00 0.00 0.00 2.44
3220 3277 2.844348 ACTACTCCATCCGTCCCAAAAT 59.156 45.455 0.00 0.00 0.00 1.82
3221 3278 4.035112 ACTACTCCATCCGTCCCAAAATA 58.965 43.478 0.00 0.00 0.00 1.40
3222 3279 4.472108 ACTACTCCATCCGTCCCAAAATAA 59.528 41.667 0.00 0.00 0.00 1.40
3223 3280 3.617284 ACTCCATCCGTCCCAAAATAAC 58.383 45.455 0.00 0.00 0.00 1.89
3224 3281 3.265995 ACTCCATCCGTCCCAAAATAACT 59.734 43.478 0.00 0.00 0.00 2.24
3225 3282 3.616219 TCCATCCGTCCCAAAATAACTG 58.384 45.455 0.00 0.00 0.00 3.16
3226 3283 3.009695 TCCATCCGTCCCAAAATAACTGT 59.990 43.478 0.00 0.00 0.00 3.55
3227 3284 3.377172 CCATCCGTCCCAAAATAACTGTC 59.623 47.826 0.00 0.00 0.00 3.51
3228 3285 2.690786 TCCGTCCCAAAATAACTGTCG 58.309 47.619 0.00 0.00 0.00 4.35
3229 3286 2.037511 TCCGTCCCAAAATAACTGTCGT 59.962 45.455 0.00 0.00 0.00 4.34
3230 3287 2.158841 CCGTCCCAAAATAACTGTCGTG 59.841 50.000 0.00 0.00 0.00 4.35
3231 3288 2.158841 CGTCCCAAAATAACTGTCGTGG 59.841 50.000 0.00 0.00 0.00 4.94
3232 3289 2.095415 GTCCCAAAATAACTGTCGTGGC 60.095 50.000 0.00 0.00 0.00 5.01
3233 3290 2.159382 CCCAAAATAACTGTCGTGGCT 58.841 47.619 0.00 0.00 0.00 4.75
3234 3291 2.556622 CCCAAAATAACTGTCGTGGCTT 59.443 45.455 0.00 0.00 0.00 4.35
3235 3292 3.005367 CCCAAAATAACTGTCGTGGCTTT 59.995 43.478 0.00 0.00 0.00 3.51
3236 3293 4.216687 CCCAAAATAACTGTCGTGGCTTTA 59.783 41.667 0.00 0.00 0.00 1.85
3237 3294 5.390613 CCAAAATAACTGTCGTGGCTTTAG 58.609 41.667 0.00 0.00 0.00 1.85
3238 3295 5.048991 CCAAAATAACTGTCGTGGCTTTAGT 60.049 40.000 0.00 0.00 0.00 2.24
3239 3296 6.435428 CAAAATAACTGTCGTGGCTTTAGTT 58.565 36.000 0.00 0.00 35.86 2.24
3240 3297 6.628919 AAATAACTGTCGTGGCTTTAGTTT 57.371 33.333 0.00 0.00 33.93 2.66
3241 3298 7.733402 AAATAACTGTCGTGGCTTTAGTTTA 57.267 32.000 0.00 0.00 33.93 2.01
3242 3299 7.733402 AATAACTGTCGTGGCTTTAGTTTAA 57.267 32.000 0.00 0.00 33.93 1.52
3243 3300 7.733402 ATAACTGTCGTGGCTTTAGTTTAAA 57.267 32.000 0.00 0.00 33.93 1.52
3244 3301 6.628919 AACTGTCGTGGCTTTAGTTTAAAT 57.371 33.333 0.00 0.00 0.00 1.40
3245 3302 6.628919 ACTGTCGTGGCTTTAGTTTAAATT 57.371 33.333 0.00 0.00 0.00 1.82
3246 3303 7.034685 ACTGTCGTGGCTTTAGTTTAAATTT 57.965 32.000 0.00 0.00 0.00 1.82
3247 3304 6.915843 ACTGTCGTGGCTTTAGTTTAAATTTG 59.084 34.615 0.00 0.00 0.00 2.32
3248 3305 6.210078 TGTCGTGGCTTTAGTTTAAATTTGG 58.790 36.000 0.00 0.00 0.00 3.28
3249 3306 5.631929 GTCGTGGCTTTAGTTTAAATTTGGG 59.368 40.000 0.00 0.00 0.00 4.12
3250 3307 5.535406 TCGTGGCTTTAGTTTAAATTTGGGA 59.465 36.000 0.00 0.00 0.00 4.37
3251 3308 5.631929 CGTGGCTTTAGTTTAAATTTGGGAC 59.368 40.000 0.00 0.00 0.00 4.46
3252 3309 5.631929 GTGGCTTTAGTTTAAATTTGGGACG 59.368 40.000 0.00 0.00 0.00 4.79
3253 3310 5.165676 GGCTTTAGTTTAAATTTGGGACGG 58.834 41.667 0.00 0.00 0.00 4.79
3254 3311 5.047872 GGCTTTAGTTTAAATTTGGGACGGA 60.048 40.000 0.00 0.00 0.00 4.69
3255 3312 6.090783 GCTTTAGTTTAAATTTGGGACGGAG 58.909 40.000 0.00 0.44 0.00 4.63
3256 3313 6.578163 TTTAGTTTAAATTTGGGACGGAGG 57.422 37.500 0.00 0.00 0.00 4.30
3257 3314 3.427573 AGTTTAAATTTGGGACGGAGGG 58.572 45.455 0.00 0.00 0.00 4.30
3258 3315 3.074836 AGTTTAAATTTGGGACGGAGGGA 59.925 43.478 0.00 0.00 0.00 4.20
3267 3324 3.236896 TGGGACGGAGGGAGTATTTATC 58.763 50.000 0.00 0.00 0.00 1.75
3317 3374 7.557719 AGAAAATCATGGGAAAGATTACGATGT 59.442 33.333 0.00 0.00 33.58 3.06
3391 3448 5.523916 CAGTTTTGCTGTAGTTCACTGTACT 59.476 40.000 0.00 0.00 40.27 2.73
3414 3471 7.995289 ACTTGTTCAAATACTTGTTGATGTGA 58.005 30.769 0.00 0.00 35.03 3.58
3415 3472 7.915397 ACTTGTTCAAATACTTGTTGATGTGAC 59.085 33.333 0.00 0.00 35.03 3.67
3416 3473 7.326968 TGTTCAAATACTTGTTGATGTGACA 57.673 32.000 0.00 0.00 35.03 3.58
3417 3474 7.939782 TGTTCAAATACTTGTTGATGTGACAT 58.060 30.769 0.00 0.00 35.03 3.06
3502 3559 6.374333 TCCATGTTACTGCTTTCCTTACATTC 59.626 38.462 0.00 0.00 0.00 2.67
3503 3560 6.375455 CCATGTTACTGCTTTCCTTACATTCT 59.625 38.462 0.00 0.00 0.00 2.40
3674 3739 9.935241 CAAGCATAAGTTGTCTATATCCATAGT 57.065 33.333 0.00 0.00 36.33 2.12
3677 3742 9.929180 GCATAAGTTGTCTATATCCATAGTTCA 57.071 33.333 0.00 0.00 36.33 3.18
3718 3792 5.494724 ATTTCATGAAAGAGCTGTCTGCTA 58.505 37.500 24.17 0.00 41.15 3.49
3808 3882 4.884668 ATGAAGGGTAAAGTCGTCTTCA 57.115 40.909 6.54 6.54 44.92 3.02
3811 3885 3.938289 AGGGTAAAGTCGTCTTCAGTC 57.062 47.619 0.00 0.00 32.90 3.51
3812 3886 2.561858 AGGGTAAAGTCGTCTTCAGTCC 59.438 50.000 0.00 0.00 32.90 3.85
3813 3887 2.353505 GGGTAAAGTCGTCTTCAGTCCC 60.354 54.545 0.00 2.63 32.90 4.46
3814 3888 2.561858 GGTAAAGTCGTCTTCAGTCCCT 59.438 50.000 0.00 0.00 32.90 4.20
3816 3890 2.296073 AAGTCGTCTTCAGTCCCTCT 57.704 50.000 0.00 0.00 0.00 3.69
3941 4017 9.599322 CCATAAATATTCATTAGTTCGTTGCTC 57.401 33.333 0.00 0.00 0.00 4.26
3945 4021 7.792374 ATATTCATTAGTTCGTTGCTCATGT 57.208 32.000 0.00 0.00 0.00 3.21
3953 4029 5.918608 AGTTCGTTGCTCATGTAATATCCT 58.081 37.500 0.00 0.00 0.00 3.24
4012 4088 1.238439 ACAATGTGTGCCAGTACAGC 58.762 50.000 0.00 0.00 0.00 4.40
4198 4275 0.322456 TTCAACTAATGCTGGCGGCT 60.322 50.000 20.66 2.08 42.39 5.52
4215 4292 1.258197 GGCTTACGCTTCATTCGCTAC 59.742 52.381 0.00 0.00 36.09 3.58
4222 4299 1.730064 GCTTCATTCGCTACGGTTCAA 59.270 47.619 0.00 0.00 0.00 2.69
4390 4467 3.692257 TTCTCTTGAAAGGAGCAGGAG 57.308 47.619 0.00 0.00 39.87 3.69
4448 4525 4.256920 AGTTGCTGAAATTACGATGCTCT 58.743 39.130 0.00 0.00 0.00 4.09
4451 4528 5.912360 TGCTGAAATTACGATGCTCTATG 57.088 39.130 0.00 0.00 0.00 2.23
4456 4533 7.117523 GCTGAAATTACGATGCTCTATGAAGAT 59.882 37.037 0.00 0.00 0.00 2.40
4493 4570 9.683069 AAACTTTCAACTCTATGCAATGTTTAG 57.317 29.630 0.00 0.00 0.00 1.85
4509 4586 3.010138 TGTTTAGGCCTGGAAATAGCTGT 59.990 43.478 17.99 0.00 0.00 4.40
4725 4802 9.399797 TCTGAGCATGTTCATTAAATATGACTT 57.600 29.630 13.00 0.00 38.40 3.01
4779 4856 1.072331 GGTTCAGGAAGTGAAGGCTCA 59.928 52.381 0.00 0.00 46.18 4.26
4881 4958 1.153208 CATGAGCTGCCAGGTCTCC 60.153 63.158 23.09 0.00 42.83 3.71
4911 4988 8.668510 AACACTCATTTTGTATATCTAGGCAG 57.331 34.615 0.00 0.00 0.00 4.85
5153 5230 6.353323 TCTTGAACAGTAGGATGTGTTGAAA 58.647 36.000 0.00 0.00 37.02 2.69
5174 5251 8.934023 TGAAATTTTTGTTATGTACTCCCTCT 57.066 30.769 0.00 0.00 0.00 3.69
5184 5261 3.643237 TGTACTCCCTCTGTCCCATAAG 58.357 50.000 0.00 0.00 0.00 1.73
5200 5277 6.260050 GTCCCATAAGATAAGATCGTTTTGCA 59.740 38.462 0.00 0.00 0.00 4.08
5201 5278 6.826231 TCCCATAAGATAAGATCGTTTTGCAA 59.174 34.615 0.00 0.00 0.00 4.08
5202 5279 7.012327 TCCCATAAGATAAGATCGTTTTGCAAG 59.988 37.037 0.00 0.00 0.00 4.01
5203 5280 6.634436 CCATAAGATAAGATCGTTTTGCAAGC 59.366 38.462 0.00 0.00 0.00 4.01
5204 5281 5.886960 AAGATAAGATCGTTTTGCAAGCT 57.113 34.783 0.00 0.00 0.00 3.74
5205 5282 5.227238 AGATAAGATCGTTTTGCAAGCTG 57.773 39.130 0.00 0.00 0.00 4.24
5206 5283 4.697352 AGATAAGATCGTTTTGCAAGCTGT 59.303 37.500 0.00 0.00 0.00 4.40
5207 5284 3.715628 AAGATCGTTTTGCAAGCTGTT 57.284 38.095 0.00 0.00 0.00 3.16
5208 5285 3.715628 AGATCGTTTTGCAAGCTGTTT 57.284 38.095 0.00 0.00 0.00 2.83
5209 5286 4.045636 AGATCGTTTTGCAAGCTGTTTT 57.954 36.364 0.00 0.00 0.00 2.43
5240 5317 8.349245 TGCAAAACAATCTTATATTATGGGACG 58.651 33.333 0.00 0.00 0.00 4.79
5242 5319 9.062524 CAAAACAATCTTATATTATGGGACGGA 57.937 33.333 0.00 0.00 0.00 4.69
5260 5337 3.518303 ACGGAGGGAGTACTTAGCAAAAT 59.482 43.478 0.00 0.00 0.00 1.82
5308 5385 6.668323 CGTTGTACATGAAGAAATGTTCCTT 58.332 36.000 0.00 0.00 41.09 3.36
5309 5386 6.578545 CGTTGTACATGAAGAAATGTTCCTTG 59.421 38.462 0.00 0.00 41.09 3.61
5406 5483 1.568504 ATCCTTTACCTGTCTCGCCA 58.431 50.000 0.00 0.00 0.00 5.69
5486 5563 6.313744 AGTTTTTGTAGCATAACCACAGTC 57.686 37.500 0.00 0.00 0.00 3.51
5492 5569 5.237815 TGTAGCATAACCACAGTCTTCAAG 58.762 41.667 0.00 0.00 0.00 3.02
5498 5575 6.546395 CATAACCACAGTCTTCAAGCATTAC 58.454 40.000 0.00 0.00 0.00 1.89
5519 5596 2.113860 AACACACAAGCTATGCGGAT 57.886 45.000 0.00 0.00 0.00 4.18
5591 5668 3.119029 TCCTGCTTGGCTTGCATTTATTC 60.119 43.478 5.56 0.00 39.86 1.75
5642 5719 7.786178 TGTCAAATTACATATGCTGTCTACC 57.214 36.000 1.58 0.00 39.39 3.18
5662 5739 7.817962 GTCTACCTGTCTTATGTTGCTTTTCTA 59.182 37.037 0.00 0.00 0.00 2.10
5819 5898 7.435068 TCTTTAGATTTTGCCAGTGACTAAC 57.565 36.000 0.00 0.00 0.00 2.34
5822 5901 5.886960 AGATTTTGCCAGTGACTAACATC 57.113 39.130 0.00 0.00 0.00 3.06
5863 5942 1.202031 CGATCGACACTCATCACACGA 60.202 52.381 10.26 0.00 0.00 4.35
5866 5945 2.419667 TCGACACTCATCACACGACTA 58.580 47.619 0.00 0.00 0.00 2.59
5871 5950 2.663602 CACTCATCACACGACTAAGTGC 59.336 50.000 0.00 0.00 45.45 4.40
5904 5983 1.456287 ACAAGGTTGTGGAGGAGCC 59.544 57.895 0.00 0.00 40.49 4.70
5930 6009 9.856488 CACTTCAACTTATAGCTAGAACACTTA 57.144 33.333 0.00 0.00 0.00 2.24
6025 6104 8.809468 AAGAAGACAAAATAAATACTCCCTCC 57.191 34.615 0.00 0.00 0.00 4.30
6026 6105 7.048512 AGAAGACAAAATAAATACTCCCTCCG 58.951 38.462 0.00 0.00 0.00 4.63
6027 6106 6.309389 AGACAAAATAAATACTCCCTCCGT 57.691 37.500 0.00 0.00 0.00 4.69
6028 6107 6.346896 AGACAAAATAAATACTCCCTCCGTC 58.653 40.000 0.00 0.00 0.00 4.79
6029 6108 5.434408 ACAAAATAAATACTCCCTCCGTCC 58.566 41.667 0.00 0.00 0.00 4.79
6030 6109 4.701651 AAATAAATACTCCCTCCGTCCC 57.298 45.455 0.00 0.00 0.00 4.46
6031 6110 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
6032 6111 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
6033 6112 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
6034 6113 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
6035 6114 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
6036 6115 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
6037 6116 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
6038 6117 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
6039 6118 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
6040 6119 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
6041 6120 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
6042 6121 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
6043 6122 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
6044 6123 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
6045 6124 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
6046 6125 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
6047 6126 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
6048 6127 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
6049 6128 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
6050 6129 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
6051 6130 8.726988 CGTCCCAAAATTCTTGTCTTAGATTTA 58.273 33.333 0.00 0.00 0.00 1.40
6084 6163 8.420374 ACGGATGTATCTAACACTAAAATGTG 57.580 34.615 0.00 0.00 42.09 3.21
6085 6164 8.255206 ACGGATGTATCTAACACTAAAATGTGA 58.745 33.333 1.47 0.00 42.09 3.58
6086 6165 9.093970 CGGATGTATCTAACACTAAAATGTGAA 57.906 33.333 1.47 0.00 42.09 3.18
6130 6209 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
6131 6210 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
6132 6211 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
6133 6212 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
6134 6213 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
6135 6214 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
6136 6215 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
6137 6216 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
6138 6217 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
6139 6218 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
6140 6219 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
6141 6220 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
6142 6221 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
6143 6222 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
6144 6223 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
6302 6382 1.180456 TGGTTAACGCCGAGTCTCCA 61.180 55.000 0.00 0.00 0.00 3.86
6310 6395 3.714391 ACGCCGAGTCTCCAATATAAAC 58.286 45.455 0.00 0.00 0.00 2.01
6339 6424 6.161855 TGATAACCTATGAAGTGCTCGAAT 57.838 37.500 0.00 0.00 0.00 3.34
6370 6455 5.120399 TGGTATGTTAAGTTTGGCCTATCG 58.880 41.667 3.32 0.00 0.00 2.92
6459 6544 2.878406 CCGCCTTTACCCATTGACATAG 59.122 50.000 0.00 0.00 0.00 2.23
6471 6556 5.295950 CCATTGACATAGTTTGTGGCAAAA 58.704 37.500 0.00 0.00 46.75 2.44
6518 6604 3.521531 TGTGGTTGCAGGGTATATCAGAA 59.478 43.478 0.00 0.00 0.00 3.02
6838 6924 7.044798 GCTTCAGTTTCTCAAGATAGGTATGT 58.955 38.462 0.00 0.00 0.00 2.29
6858 6944 5.371115 TGTGGCTACTTGCTTATTTTGTC 57.629 39.130 0.64 0.00 42.39 3.18
7116 7202 6.959639 TTATCTCCATTTGTGAATAAGGCC 57.040 37.500 0.00 0.00 0.00 5.19
7117 7203 4.591321 TCTCCATTTGTGAATAAGGCCT 57.409 40.909 0.00 0.00 0.00 5.19
7119 7205 4.949856 TCTCCATTTGTGAATAAGGCCTTC 59.050 41.667 24.49 8.92 0.00 3.46
7120 7206 4.934356 TCCATTTGTGAATAAGGCCTTCT 58.066 39.130 24.49 10.01 0.00 2.85
7121 7207 4.706476 TCCATTTGTGAATAAGGCCTTCTG 59.294 41.667 24.49 1.63 0.00 3.02
7123 7209 5.047092 CCATTTGTGAATAAGGCCTTCTGTT 60.047 40.000 24.49 15.58 0.00 3.16
7124 7210 6.458210 CATTTGTGAATAAGGCCTTCTGTTT 58.542 36.000 24.49 11.80 0.00 2.83
7125 7211 7.309744 CCATTTGTGAATAAGGCCTTCTGTTTA 60.310 37.037 24.49 9.75 0.00 2.01
7126 7212 7.589958 TTTGTGAATAAGGCCTTCTGTTTAA 57.410 32.000 24.49 9.52 0.00 1.52
7127 7213 7.775053 TTGTGAATAAGGCCTTCTGTTTAAT 57.225 32.000 24.49 4.85 0.00 1.40
7128 7214 7.775053 TGTGAATAAGGCCTTCTGTTTAATT 57.225 32.000 24.49 14.30 0.00 1.40
7129 7215 8.189119 TGTGAATAAGGCCTTCTGTTTAATTT 57.811 30.769 24.49 2.98 0.00 1.82
7130 7216 8.303876 TGTGAATAAGGCCTTCTGTTTAATTTC 58.696 33.333 24.49 11.93 0.00 2.17
7131 7217 7.759886 GTGAATAAGGCCTTCTGTTTAATTTCC 59.240 37.037 24.49 4.15 0.00 3.13
7132 7218 7.673926 TGAATAAGGCCTTCTGTTTAATTTCCT 59.326 33.333 24.49 0.00 0.00 3.36
7133 7219 8.435931 AATAAGGCCTTCTGTTTAATTTCCTT 57.564 30.769 24.49 0.00 35.75 3.36
7134 7220 6.747414 AAGGCCTTCTGTTTAATTTCCTTT 57.253 33.333 13.78 0.00 0.00 3.11
7135 7221 7.849322 AAGGCCTTCTGTTTAATTTCCTTTA 57.151 32.000 13.78 0.00 0.00 1.85
7136 7222 7.468141 AGGCCTTCTGTTTAATTTCCTTTAG 57.532 36.000 0.00 0.00 0.00 1.85
7137 7223 7.238710 AGGCCTTCTGTTTAATTTCCTTTAGA 58.761 34.615 0.00 0.00 0.00 2.10
7138 7224 7.176865 AGGCCTTCTGTTTAATTTCCTTTAGAC 59.823 37.037 0.00 0.00 0.00 2.59
7156 7242 2.884639 AGACTGGCGCACTTTAATGTTT 59.115 40.909 10.83 0.00 0.00 2.83
7163 7257 2.470999 CGCACTTTAATGTTTGGTGTGC 59.529 45.455 0.00 0.00 43.73 4.57
7182 7277 3.686726 GTGCCAAGTCCTATTCTTGACTG 59.313 47.826 7.16 0.00 43.17 3.51
7199 7294 6.878389 TCTTGACTGTTTGTGCATGACATATA 59.122 34.615 0.00 0.00 33.40 0.86
7203 7300 7.768120 TGACTGTTTGTGCATGACATATATGTA 59.232 33.333 18.28 7.73 41.95 2.29
7205 7302 8.562052 ACTGTTTGTGCATGACATATATGTATG 58.438 33.333 18.28 19.40 41.95 2.39
7248 7345 7.360113 TGAGAGAAATTTGGTTTAGCCTTTT 57.640 32.000 0.00 0.00 38.35 2.27
7252 7349 8.314021 AGAGAAATTTGGTTTAGCCTTTTATGG 58.686 33.333 0.00 0.00 38.35 2.74
7259 7356 5.014202 GGTTTAGCCTTTTATGGTCTGGAA 58.986 41.667 0.00 0.00 0.00 3.53
7276 7373 6.147985 GGTCTGGAAACATTCTCTTGTTAGAC 59.852 42.308 8.94 8.94 39.63 2.59
7297 7394 4.327680 ACTTTCAGTTATGCTCACTTCCC 58.672 43.478 0.00 0.00 0.00 3.97
7344 7441 3.243134 GCTTTTTGTGCAATGTTGGCAAT 60.243 39.130 1.92 0.00 43.91 3.56
7345 7442 4.024218 GCTTTTTGTGCAATGTTGGCAATA 60.024 37.500 1.92 0.00 43.91 1.90
7346 7443 5.335035 GCTTTTTGTGCAATGTTGGCAATAT 60.335 36.000 1.92 2.73 43.91 1.28
7407 7515 9.921637 AAGAACAACACTTTATTTGTTTCTTCA 57.078 25.926 1.54 0.00 44.16 3.02
7465 7573 8.782339 TTTCTACTAGTTGGCTGGTAATTTAC 57.218 34.615 0.00 0.00 38.05 2.01
7492 7600 7.596248 GCTTGACAGAAAATGTTGTATTGTGAT 59.404 33.333 0.00 0.00 44.17 3.06
7493 7601 9.121517 CTTGACAGAAAATGTTGTATTGTGATC 57.878 33.333 0.00 0.00 44.17 2.92
7494 7602 8.164058 TGACAGAAAATGTTGTATTGTGATCA 57.836 30.769 0.00 0.00 44.17 2.92
7495 7603 8.075574 TGACAGAAAATGTTGTATTGTGATCAC 58.924 33.333 19.27 19.27 44.17 3.06
7496 7604 8.169977 ACAGAAAATGTTGTATTGTGATCACT 57.830 30.769 25.55 9.97 39.96 3.41
7509 7617 1.901833 TGATCACTTCAGGTGCAGCTA 59.098 47.619 19.71 2.73 44.98 3.32
7589 7697 1.696336 ACCTCAGTCTGCATTGTCACT 59.304 47.619 0.00 0.00 0.00 3.41
7667 7784 6.252233 TCCCAATGTTTTCACCTGATTCATA 58.748 36.000 0.00 0.00 0.00 2.15
7737 7855 4.212004 CGCAAATCAACTTCAGAGAACAGA 59.788 41.667 0.00 0.00 0.00 3.41
7828 7946 3.508402 TGTTGTCAGCGTCTGGAGTATTA 59.492 43.478 6.95 0.00 31.51 0.98
7877 7996 9.691362 TCAAACTAGGAAAAACATCAAATAAGC 57.309 29.630 0.00 0.00 0.00 3.09
7880 7999 5.420725 AGGAAAAACATCAAATAAGCCCC 57.579 39.130 0.00 0.00 0.00 5.80
7904 8023 0.956633 CAACTCAGGTGCTTGCACAT 59.043 50.000 24.34 16.70 0.00 3.21
7921 8040 3.611057 GCACATGCACCTCAGAGAAAAAG 60.611 47.826 0.00 0.00 41.59 2.27
7927 8046 4.949856 TGCACCTCAGAGAAAAAGAAACTT 59.050 37.500 0.00 0.00 0.00 2.66
7959 8078 3.758554 AGATCAATTTACGCAGGTGCTTT 59.241 39.130 0.00 0.00 39.32 3.51
7961 8080 2.881513 TCAATTTACGCAGGTGCTTTGA 59.118 40.909 0.00 0.00 39.32 2.69
7978 8150 2.861462 TGAAACTTTGCACGGGAAAG 57.139 45.000 13.54 13.54 36.63 2.62
7980 8152 2.098443 TGAAACTTTGCACGGGAAAGAC 59.902 45.455 19.33 12.41 34.94 3.01
8028 8200 9.090692 ACATGATTGAAAAAGAAAACACAAGAG 57.909 29.630 0.00 0.00 0.00 2.85
8059 8231 5.313712 AGAATGGTACTCCGTTTTTCACAT 58.686 37.500 0.00 0.00 42.37 3.21
8079 8251 9.987272 TTCACATTCATAGTGATCTTATGTAGG 57.013 33.333 13.79 10.41 44.66 3.18
8081 8253 9.416794 CACATTCATAGTGATCTTATGTAGGAC 57.583 37.037 13.79 0.00 39.30 3.85
8083 8255 9.853555 CATTCATAGTGATCTTATGTAGGACTC 57.146 37.037 13.79 0.00 0.00 3.36
8084 8256 7.674471 TCATAGTGATCTTATGTAGGACTCG 57.326 40.000 13.79 0.00 0.00 4.18
8085 8257 7.225011 TCATAGTGATCTTATGTAGGACTCGT 58.775 38.462 13.79 0.00 0.00 4.18
8086 8258 7.388224 TCATAGTGATCTTATGTAGGACTCGTC 59.612 40.741 13.79 0.00 0.00 4.20
8088 8260 3.250280 TGATCTTATGTAGGACTCGTCGC 59.750 47.826 0.00 0.00 0.00 5.19
8089 8261 2.635714 TCTTATGTAGGACTCGTCGCA 58.364 47.619 0.00 0.00 0.00 5.10
8090 8262 3.011818 TCTTATGTAGGACTCGTCGCAA 58.988 45.455 0.00 0.00 0.00 4.85
8092 8264 2.736144 ATGTAGGACTCGTCGCAAAA 57.264 45.000 0.00 0.00 0.00 2.44
8093 8265 2.512485 TGTAGGACTCGTCGCAAAAA 57.488 45.000 0.00 0.00 0.00 1.94
8116 8298 1.205893 GAGAGTAGTGCAGGACCCTTG 59.794 57.143 0.00 0.00 0.00 3.61
8140 8322 2.957402 TCAGGGAATGAGTTGCACTT 57.043 45.000 0.00 0.00 32.77 3.16
8160 8342 6.197276 CACTTGTCTTCAACAATCACTCTTG 58.803 40.000 0.00 0.00 46.53 3.02
8245 8427 8.199449 CCAAAACATTCTGCATATTACCTGAAT 58.801 33.333 0.00 0.00 32.20 2.57
8361 8548 0.394192 TCCCTATCATCTTGGCGCTG 59.606 55.000 7.64 0.00 0.00 5.18
8385 8600 7.765307 TGAAAAATTCCAGAATGTGCTAGATC 58.235 34.615 0.00 0.00 0.00 2.75
8424 8639 5.411831 AGCATTCACTGTTAGATGACTGA 57.588 39.130 0.00 0.00 29.44 3.41
8488 8711 2.152016 GAGCACGGTTTTTCTAAGGCT 58.848 47.619 0.00 0.00 0.00 4.58
8526 8749 1.597742 TTCTTTCTGACTGTGCAGGC 58.402 50.000 4.11 0.64 36.55 4.85
8542 8765 2.170607 GCAGGCTTCTGTTACAGGGATA 59.829 50.000 12.79 0.00 40.51 2.59
8585 8826 2.906458 CAGGATCCGAGCTGGCTT 59.094 61.111 5.98 0.00 37.80 4.35
8587 8828 0.465705 CAGGATCCGAGCTGGCTTTA 59.534 55.000 5.98 0.00 37.80 1.85
8590 8831 1.346068 GGATCCGAGCTGGCTTTAGAT 59.654 52.381 0.00 0.17 37.80 1.98
8600 8841 3.871485 CTGGCTTTAGATCTGCAAGTCT 58.129 45.455 17.39 5.88 33.76 3.24
8618 8859 3.612247 TTGAAGCTGGAGCCGGAGC 62.612 63.158 5.05 4.85 43.38 4.70
8655 8896 4.020617 CCAGGAGCTTGGCACGGA 62.021 66.667 0.00 0.00 0.00 4.69
8661 8902 0.878086 GAGCTTGGCACGGAGATAGC 60.878 60.000 0.00 0.00 0.00 2.97
8665 8906 1.971505 TTGGCACGGAGATAGCAGGG 61.972 60.000 0.00 0.00 0.00 4.45
8672 8913 0.105453 GGAGATAGCAGGGACCTCCA 60.105 60.000 0.00 0.00 42.15 3.86
8681 8922 1.306997 GGGACCTCCAGGGACATGA 60.307 63.158 0.00 0.00 40.27 3.07
8691 8932 3.019564 CCAGGGACATGATTGACTTTCC 58.980 50.000 0.00 0.00 0.00 3.13
8694 8935 2.379005 GGACATGATTGACTTTCCCCC 58.621 52.381 0.00 0.00 0.00 5.40
8730 8971 7.243487 TGTCTCGCTCAATTTCACATATTTTC 58.757 34.615 0.00 0.00 0.00 2.29
8736 8977 6.507958 TCAATTTCACATATTTTCGAGGCA 57.492 33.333 0.00 0.00 0.00 4.75
8769 9046 6.737720 ACCTCATTCTATAGCTTGATGACA 57.262 37.500 0.00 0.00 0.00 3.58
8807 9084 1.523154 TTCGTGGCTTGAACCATGGC 61.523 55.000 13.04 0.00 45.30 4.40
8860 9219 0.036765 ACCGACGGAATGCTGCTTTA 60.037 50.000 23.38 0.00 0.00 1.85
8943 11555 9.832445 CTCTAAAGGTAAGGATATTTTGTAGCA 57.168 33.333 0.00 0.00 0.00 3.49
8967 11579 5.845391 TTGAGAACCCGAAAAAGAAATGT 57.155 34.783 0.00 0.00 0.00 2.71
8968 11580 5.845391 TGAGAACCCGAAAAAGAAATGTT 57.155 34.783 0.00 0.00 0.00 2.71
8971 11583 7.100409 TGAGAACCCGAAAAAGAAATGTTTTT 58.900 30.769 1.16 1.16 41.32 1.94
9081 12000 5.568023 CGGACTGGACAAAACTATACTCCAA 60.568 44.000 0.00 0.00 30.54 3.53
9082 12001 6.415573 GGACTGGACAAAACTATACTCCAAT 58.584 40.000 0.00 0.00 30.54 3.16
9083 12002 7.562135 GGACTGGACAAAACTATACTCCAATA 58.438 38.462 0.00 0.00 30.54 1.90
9084 12003 8.211629 GGACTGGACAAAACTATACTCCAATAT 58.788 37.037 0.00 0.00 30.54 1.28
9401 12326 5.934625 ACCAAGAACAACTCTAAGCATACAG 59.065 40.000 0.00 0.00 32.46 2.74
9419 12344 4.240881 ACAGTGGGACATATTGCTCAAT 57.759 40.909 0.00 0.49 44.52 2.57
9429 12354 6.039717 GGACATATTGCTCAATAGAAGGCAAA 59.960 38.462 8.14 0.00 45.60 3.68
9432 12357 8.480501 ACATATTGCTCAATAGAAGGCAAAAAT 58.519 29.630 8.14 0.00 45.60 1.82
9472 12397 3.810941 TGATAACCAAGAACGTGGACAAC 59.189 43.478 13.09 3.77 41.65 3.32
9498 12423 8.023021 TGATACTTGATAGCCTCTGTGTAAAT 57.977 34.615 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.019411 TGGCAGAATAAGACATGGAAGTCA 60.019 41.667 0.00 0.00 40.98 3.41
51 52 2.034812 CAGAGGCGATTGTAGGTAGACC 59.965 54.545 0.00 0.00 0.00 3.85
102 103 2.418746 GCGAGACTTCTCCAAATGGCTA 60.419 50.000 0.54 0.00 39.79 3.93
286 288 2.582436 CCCATCCAAGTACCGCGT 59.418 61.111 4.92 0.00 0.00 6.01
554 560 0.712380 TAAACTACCTCCTCCCCGGT 59.288 55.000 0.00 0.00 37.31 5.28
594 600 1.682854 TCCTACAAAACGACACGAGGT 59.317 47.619 0.00 0.00 0.00 3.85
628 634 1.004277 GCAGGACACTCGAAGACACG 61.004 60.000 0.00 0.00 0.00 4.49
659 665 7.882271 AGAAGAGAGCAAGACAATTTACAAGAT 59.118 33.333 0.00 0.00 0.00 2.40
691 697 0.317436 CACAAAGCGCGTGCCTTAAA 60.317 50.000 19.02 0.00 44.31 1.52
730 737 7.478520 ACGACACCAAAATATACATAAGAGC 57.521 36.000 0.00 0.00 0.00 4.09
731 738 9.961265 TCTACGACACCAAAATATACATAAGAG 57.039 33.333 0.00 0.00 0.00 2.85
737 744 9.872721 TTTGTATCTACGACACCAAAATATACA 57.127 29.630 0.00 0.00 0.00 2.29
741 748 9.872721 TGTATTTGTATCTACGACACCAAAATA 57.127 29.630 0.00 0.00 0.00 1.40
742 749 8.780846 TGTATTTGTATCTACGACACCAAAAT 57.219 30.769 0.00 0.00 0.00 1.82
743 750 8.604640 TTGTATTTGTATCTACGACACCAAAA 57.395 30.769 0.00 0.00 0.00 2.44
744 751 8.780846 ATTGTATTTGTATCTACGACACCAAA 57.219 30.769 0.00 0.00 0.00 3.28
745 752 8.780846 AATTGTATTTGTATCTACGACACCAA 57.219 30.769 0.00 0.00 0.00 3.67
746 753 8.780846 AAATTGTATTTGTATCTACGACACCA 57.219 30.769 0.00 0.00 0.00 4.17
899 907 7.338710 ACAGTGGGATAACTTACTACGTAGTA 58.661 38.462 27.51 27.51 45.11 1.82
901 909 6.317140 TGACAGTGGGATAACTTACTACGTAG 59.683 42.308 20.97 20.97 0.00 3.51
902 910 6.179756 TGACAGTGGGATAACTTACTACGTA 58.820 40.000 0.00 0.00 0.00 3.57
904 912 5.125097 ACTGACAGTGGGATAACTTACTACG 59.875 44.000 7.47 0.00 0.00 3.51
906 914 6.250711 TGACTGACAGTGGGATAACTTACTA 58.749 40.000 14.14 0.00 0.00 1.82
907 915 5.084519 TGACTGACAGTGGGATAACTTACT 58.915 41.667 14.14 0.00 0.00 2.24
908 916 5.401531 TGACTGACAGTGGGATAACTTAC 57.598 43.478 14.14 0.00 0.00 2.34
909 917 6.228258 GTTTGACTGACAGTGGGATAACTTA 58.772 40.000 14.14 0.00 0.00 2.24
910 918 4.974645 TTGACTGACAGTGGGATAACTT 57.025 40.909 14.14 0.00 0.00 2.66
911 919 4.642429 GTTTGACTGACAGTGGGATAACT 58.358 43.478 14.14 0.00 0.00 2.24
912 920 3.432252 CGTTTGACTGACAGTGGGATAAC 59.568 47.826 14.14 8.45 0.00 1.89
913 921 3.659786 CGTTTGACTGACAGTGGGATAA 58.340 45.455 14.14 0.00 0.00 1.75
949 957 0.599204 CAAGCTTGGTTTGCAGCTGG 60.599 55.000 19.14 0.00 46.01 4.85
950 958 0.103572 ACAAGCTTGGTTTGCAGCTG 59.896 50.000 29.18 10.11 46.01 4.24
997 1005 4.864334 GGACAGGAGCGCCATGGG 62.864 72.222 15.13 4.77 36.29 4.00
1165 1173 2.122954 GTGACCAGGAGGGGAGGT 59.877 66.667 0.00 0.00 42.91 3.85
1183 1191 3.151022 GAGAGGAGGAGGGCGGTG 61.151 72.222 0.00 0.00 0.00 4.94
1184 1192 4.824515 CGAGAGGAGGAGGGCGGT 62.825 72.222 0.00 0.00 0.00 5.68
1187 1195 2.835895 GGTCGAGAGGAGGAGGGC 60.836 72.222 0.00 0.00 0.00 5.19
1233 1241 1.139058 AGCTCCTTACCAACGCCATAG 59.861 52.381 0.00 0.00 0.00 2.23
1235 1243 0.107654 GAGCTCCTTACCAACGCCAT 60.108 55.000 0.87 0.00 0.00 4.40
1293 1301 3.319122 GCAAAGAAAGATCCCACACAACT 59.681 43.478 0.00 0.00 0.00 3.16
1297 1305 2.352127 GCAGCAAAGAAAGATCCCACAC 60.352 50.000 0.00 0.00 0.00 3.82
1351 1360 5.661056 TGATTAGATTAGTAGGGCATCCG 57.339 43.478 0.00 0.00 38.33 4.18
1475 1501 2.834549 CTGAAACTCTAAGAGCAGGGGA 59.165 50.000 0.00 0.00 32.04 4.81
1557 1584 4.649674 TGAGTGGGTGTATTCTGTAGATCC 59.350 45.833 0.00 0.00 0.00 3.36
1580 1607 2.361610 CCCCTGCATTTCGCCACT 60.362 61.111 0.00 0.00 41.33 4.00
1592 1619 9.184523 TGATTGTAACTATAAAAATGTCCCCTG 57.815 33.333 0.00 0.00 0.00 4.45
1694 1726 7.312154 TCAAATTTATGCTTTGCTCAATACGT 58.688 30.769 0.00 0.00 34.36 3.57
1695 1727 7.739022 TCAAATTTATGCTTTGCTCAATACG 57.261 32.000 0.00 0.00 34.36 3.06
1712 1745 7.226523 GCAGGAGTATTTTGGTTGTTCAAATTT 59.773 33.333 0.00 0.00 36.63 1.82
1826 1880 5.772672 TCCAGTAGGATCTTCTATGAGAAGC 59.227 44.000 10.74 0.00 44.09 3.86
1853 1907 1.349026 AGAGGGATGTTGTGGACACAG 59.651 52.381 5.21 0.00 42.04 3.66
1912 1966 4.332543 TCAAACGGATCATTCACACTATGC 59.667 41.667 0.00 0.00 0.00 3.14
1928 1982 0.656205 CGCCGTTGAACTTCAAACGG 60.656 55.000 25.49 25.49 45.19 4.44
1935 1989 2.032426 CCAAAAGTACGCCGTTGAACTT 59.968 45.455 0.00 0.00 33.72 2.66
1945 1999 0.110373 CCGCAGAACCAAAAGTACGC 60.110 55.000 0.00 0.00 0.00 4.42
1987 2041 4.745125 TCAGAGTTTAGCACTGAAAAGTCG 59.255 41.667 0.00 0.00 40.85 4.18
1992 2046 4.686091 CGTCATCAGAGTTTAGCACTGAAA 59.314 41.667 0.36 0.00 45.35 2.69
2005 2059 6.863645 TCTTGAAGTAAGAAACGTCATCAGAG 59.136 38.462 0.00 0.00 44.49 3.35
2046 2100 5.470368 TGTCTTTATCTTGAACGACTCCAG 58.530 41.667 0.00 0.00 0.00 3.86
2089 2143 4.832823 CCCTTGTATTTACCCATCCAATCC 59.167 45.833 0.00 0.00 0.00 3.01
2157 2211 3.085533 TCCTCTTGACTAGCTGACAGAC 58.914 50.000 6.65 0.00 0.00 3.51
2203 2257 5.177142 TGCAATTGTCACAAAATGGAATTCG 59.823 36.000 7.40 0.00 33.67 3.34
2231 2285 4.003648 ACTGCCACTTCTGTACTAATTGC 58.996 43.478 0.00 0.00 0.00 3.56
2235 2289 6.599356 TGATTACTGCCACTTCTGTACTAA 57.401 37.500 0.00 0.00 0.00 2.24
2242 2296 8.806146 ACAATTAAAATGATTACTGCCACTTCT 58.194 29.630 0.00 0.00 0.00 2.85
2328 2382 2.831526 ACTGCGAAAATTTAAGGGGCAT 59.168 40.909 0.00 0.00 0.00 4.40
2346 2400 5.163953 CGCACCTTAGTTGACATCTAAACTG 60.164 44.000 7.27 6.51 37.23 3.16
2370 2424 7.656707 ATTCTGCAACCAAACAAACATAATC 57.343 32.000 0.00 0.00 0.00 1.75
2394 2448 9.311916 TCGTAAGCTACAACTTTACAAACTTTA 57.688 29.630 0.00 0.00 37.18 1.85
2397 2451 7.958053 ATCGTAAGCTACAACTTTACAAACT 57.042 32.000 0.00 0.00 37.18 2.66
2439 2493 3.840468 CAATTGTGTGATGGACCATGTG 58.160 45.455 12.99 0.00 0.00 3.21
2440 2494 2.231964 GCAATTGTGTGATGGACCATGT 59.768 45.455 12.99 0.00 0.00 3.21
2457 2511 2.393271 GCGGATAGCCTAGATGCAAT 57.607 50.000 0.00 0.00 40.81 3.56
2471 2525 2.499289 CTGGAATAGCCTGATAGCGGAT 59.501 50.000 0.00 0.00 37.79 4.18
2472 2526 1.895798 CTGGAATAGCCTGATAGCGGA 59.104 52.381 0.00 0.00 37.79 5.54
2473 2527 1.620819 ACTGGAATAGCCTGATAGCGG 59.379 52.381 0.00 0.00 38.83 5.52
2474 2528 3.393089 AACTGGAATAGCCTGATAGCG 57.607 47.619 0.00 0.00 38.83 4.26
2475 2529 4.040461 TGGTAACTGGAATAGCCTGATAGC 59.960 45.833 0.00 0.00 39.86 2.97
2476 2530 5.808366 TGGTAACTGGAATAGCCTGATAG 57.192 43.478 0.00 0.00 38.83 2.08
2477 2531 5.454755 GCTTGGTAACTGGAATAGCCTGATA 60.455 44.000 0.00 0.00 38.83 2.15
2574 2628 6.704493 GCTTTCATGAAACATCCAATGCATAT 59.296 34.615 16.91 0.00 0.00 1.78
2589 2643 6.110033 TGCTACTAAATACGGCTTTCATGAA 58.890 36.000 3.38 3.38 0.00 2.57
2936 2990 1.153823 CCGCCAATCGTCTCGAGTT 60.154 57.895 13.13 0.00 39.91 3.01
3090 3144 8.735692 AGTACTCTACCACTGATACTAAGTTC 57.264 38.462 0.00 0.00 0.00 3.01
3193 3250 3.118371 GGGACGGATGGAGTAGTTCATTT 60.118 47.826 0.00 0.00 0.00 2.32
3205 3262 3.352648 ACAGTTATTTTGGGACGGATGG 58.647 45.455 0.00 0.00 0.00 3.51
3206 3263 3.063452 CGACAGTTATTTTGGGACGGATG 59.937 47.826 0.00 0.00 0.00 3.51
3207 3264 3.267483 CGACAGTTATTTTGGGACGGAT 58.733 45.455 0.00 0.00 0.00 4.18
3208 3265 2.037511 ACGACAGTTATTTTGGGACGGA 59.962 45.455 0.00 0.00 0.00 4.69
3209 3266 2.158841 CACGACAGTTATTTTGGGACGG 59.841 50.000 0.00 0.00 0.00 4.79
3210 3267 2.158841 CCACGACAGTTATTTTGGGACG 59.841 50.000 0.00 0.00 0.00 4.79
3211 3268 2.095415 GCCACGACAGTTATTTTGGGAC 60.095 50.000 0.00 0.00 0.00 4.46
3212 3269 2.156098 GCCACGACAGTTATTTTGGGA 58.844 47.619 0.00 0.00 0.00 4.37
3213 3270 2.159382 AGCCACGACAGTTATTTTGGG 58.841 47.619 0.00 0.00 0.00 4.12
3214 3271 3.915437 AAGCCACGACAGTTATTTTGG 57.085 42.857 0.00 0.00 0.00 3.28
3215 3272 5.997385 ACTAAAGCCACGACAGTTATTTTG 58.003 37.500 0.00 0.00 0.00 2.44
3216 3273 6.628919 AACTAAAGCCACGACAGTTATTTT 57.371 33.333 0.00 0.00 0.00 1.82
3217 3274 6.628919 AAACTAAAGCCACGACAGTTATTT 57.371 33.333 0.00 0.00 0.00 1.40
3218 3275 7.733402 TTAAACTAAAGCCACGACAGTTATT 57.267 32.000 0.00 0.00 0.00 1.40
3219 3276 7.733402 TTTAAACTAAAGCCACGACAGTTAT 57.267 32.000 0.00 0.00 0.00 1.89
3220 3277 7.733402 ATTTAAACTAAAGCCACGACAGTTA 57.267 32.000 0.00 0.00 0.00 2.24
3221 3278 6.628919 ATTTAAACTAAAGCCACGACAGTT 57.371 33.333 0.00 0.00 0.00 3.16
3222 3279 6.628919 AATTTAAACTAAAGCCACGACAGT 57.371 33.333 0.00 0.00 0.00 3.55
3223 3280 6.362283 CCAAATTTAAACTAAAGCCACGACAG 59.638 38.462 0.00 0.00 0.00 3.51
3224 3281 6.210078 CCAAATTTAAACTAAAGCCACGACA 58.790 36.000 0.00 0.00 0.00 4.35
3225 3282 5.631929 CCCAAATTTAAACTAAAGCCACGAC 59.368 40.000 0.00 0.00 0.00 4.34
3226 3283 5.535406 TCCCAAATTTAAACTAAAGCCACGA 59.465 36.000 0.00 0.00 0.00 4.35
3227 3284 5.631929 GTCCCAAATTTAAACTAAAGCCACG 59.368 40.000 0.00 0.00 0.00 4.94
3228 3285 5.631929 CGTCCCAAATTTAAACTAAAGCCAC 59.368 40.000 0.00 0.00 0.00 5.01
3229 3286 5.279056 CCGTCCCAAATTTAAACTAAAGCCA 60.279 40.000 0.00 0.00 0.00 4.75
3230 3287 5.047872 TCCGTCCCAAATTTAAACTAAAGCC 60.048 40.000 0.00 0.00 0.00 4.35
3231 3288 6.016213 TCCGTCCCAAATTTAAACTAAAGC 57.984 37.500 0.00 0.00 0.00 3.51
3232 3289 6.349860 CCCTCCGTCCCAAATTTAAACTAAAG 60.350 42.308 0.00 0.00 0.00 1.85
3233 3290 5.477637 CCCTCCGTCCCAAATTTAAACTAAA 59.522 40.000 0.00 0.00 0.00 1.85
3234 3291 5.011586 CCCTCCGTCCCAAATTTAAACTAA 58.988 41.667 0.00 0.00 0.00 2.24
3235 3292 4.289148 TCCCTCCGTCCCAAATTTAAACTA 59.711 41.667 0.00 0.00 0.00 2.24
3236 3293 3.074836 TCCCTCCGTCCCAAATTTAAACT 59.925 43.478 0.00 0.00 0.00 2.66
3237 3294 3.423749 TCCCTCCGTCCCAAATTTAAAC 58.576 45.455 0.00 0.00 0.00 2.01
3238 3295 3.074836 ACTCCCTCCGTCCCAAATTTAAA 59.925 43.478 0.00 0.00 0.00 1.52
3239 3296 2.645797 ACTCCCTCCGTCCCAAATTTAA 59.354 45.455 0.00 0.00 0.00 1.52
3240 3297 2.271777 ACTCCCTCCGTCCCAAATTTA 58.728 47.619 0.00 0.00 0.00 1.40
3241 3298 1.073098 ACTCCCTCCGTCCCAAATTT 58.927 50.000 0.00 0.00 0.00 1.82
3242 3299 1.961133 TACTCCCTCCGTCCCAAATT 58.039 50.000 0.00 0.00 0.00 1.82
3243 3300 2.191981 ATACTCCCTCCGTCCCAAAT 57.808 50.000 0.00 0.00 0.00 2.32
3244 3301 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3245 3302 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
3246 3303 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
3247 3304 3.508426 AGATAAATACTCCCTCCGTCCC 58.492 50.000 0.00 0.00 0.00 4.46
3248 3305 5.568392 TCTAGATAAATACTCCCTCCGTCC 58.432 45.833 0.00 0.00 0.00 4.79
3249 3306 7.393796 TCAATCTAGATAAATACTCCCTCCGTC 59.606 40.741 5.46 0.00 0.00 4.79
3250 3307 7.239438 TCAATCTAGATAAATACTCCCTCCGT 58.761 38.462 5.46 0.00 0.00 4.69
3251 3308 7.704578 TCAATCTAGATAAATACTCCCTCCG 57.295 40.000 5.46 0.00 0.00 4.63
3252 3309 9.261035 TGATCAATCTAGATAAATACTCCCTCC 57.739 37.037 5.46 0.00 0.00 4.30
3317 3374 0.389817 CTCGAAGCACCCATCAACGA 60.390 55.000 0.00 0.00 0.00 3.85
3386 3443 8.898761 ACATCAACAAGTATTTGAACAAGTACA 58.101 29.630 17.63 2.28 36.57 2.90
3391 3448 7.766283 TGTCACATCAACAAGTATTTGAACAA 58.234 30.769 4.81 0.00 36.57 2.83
3424 3481 6.500684 TGGAAATCTAAAACAGATGAGCAC 57.499 37.500 0.00 0.00 43.56 4.40
3427 3484 9.918630 AAAACATGGAAATCTAAAACAGATGAG 57.081 29.630 0.00 0.00 43.56 2.90
3455 3512 7.568349 TGGAAATCTCAGAAGCAGTATACATT 58.432 34.615 5.50 0.00 0.00 2.71
3502 3559 1.153289 CCTTGTGATCTCGGGCCAG 60.153 63.158 4.39 0.00 0.00 4.85
3503 3560 1.488705 AACCTTGTGATCTCGGGCCA 61.489 55.000 4.39 0.00 0.00 5.36
3651 3716 9.929180 TGAACTATGGATATAGACAACTTATGC 57.071 33.333 1.62 0.00 38.88 3.14
3718 3792 9.396022 CACAAGTAAGAATACCATTTACCTGAT 57.604 33.333 0.00 0.00 32.08 2.90
3808 3882 6.614906 ATGAGAACAGAATCATAAGAGGGACT 59.385 38.462 0.00 0.00 36.23 3.85
3811 3885 6.423302 CGAATGAGAACAGAATCATAAGAGGG 59.577 42.308 0.00 0.00 35.11 4.30
3812 3886 6.983307 ACGAATGAGAACAGAATCATAAGAGG 59.017 38.462 0.00 0.00 35.11 3.69
3813 3887 7.042858 CCACGAATGAGAACAGAATCATAAGAG 60.043 40.741 0.00 0.00 35.11 2.85
3814 3888 6.758416 CCACGAATGAGAACAGAATCATAAGA 59.242 38.462 0.00 0.00 35.11 2.10
3816 3890 6.313658 CACCACGAATGAGAACAGAATCATAA 59.686 38.462 0.00 0.00 35.11 1.90
3929 4005 7.050970 AGGATATTACATGAGCAACGAACTA 57.949 36.000 0.00 0.00 0.00 2.24
3993 4069 1.238439 GCTGTACTGGCACACATTGT 58.762 50.000 1.65 0.00 0.00 2.71
4012 4088 6.749118 TGATGACAAGATTATATGAGCGATCG 59.251 38.462 11.69 11.69 0.00 3.69
4170 4247 4.414852 CAGCATTAGTTGAAATGTTCCCG 58.585 43.478 0.00 0.00 38.78 5.14
4198 4275 1.135315 ACCGTAGCGAATGAAGCGTAA 60.135 47.619 0.00 0.00 40.04 3.18
4203 4280 4.092821 TGAATTGAACCGTAGCGAATGAAG 59.907 41.667 0.00 0.00 0.00 3.02
4215 4292 6.194796 AGTACATTTCCATGAATTGAACCG 57.805 37.500 0.00 0.00 34.11 4.44
4268 4345 7.121020 TCAGAAATAGCTGATTTGTGCACATAA 59.879 33.333 22.39 17.31 44.61 1.90
4312 4389 5.240844 CCCTTTCTTCGTTCAGGTAAACAAT 59.759 40.000 0.00 0.00 0.00 2.71
4390 4467 8.076178 ACAGAATTACTCAAACAGCAAACATAC 58.924 33.333 0.00 0.00 0.00 2.39
4470 4547 6.749118 GCCTAAACATTGCATAGAGTTGAAAG 59.251 38.462 0.00 0.00 0.00 2.62
4493 4570 3.492102 TCATACAGCTATTTCCAGGCC 57.508 47.619 0.00 0.00 0.00 5.19
4725 4802 7.490840 TGTGTTTACTAACGGCTTGCTATATA 58.509 34.615 0.00 0.00 37.06 0.86
4726 4803 6.342906 TGTGTTTACTAACGGCTTGCTATAT 58.657 36.000 0.00 0.00 37.06 0.86
4857 4934 0.529337 CCTGGCAGCTCATGTAGTCG 60.529 60.000 9.56 0.00 0.00 4.18
4881 4958 9.926751 CTAGATATACAAAATGAGTGTTTGCAG 57.073 33.333 0.00 0.00 39.16 4.41
4911 4988 6.267496 ACATTTGATAACAAGGGCTAACAC 57.733 37.500 0.00 0.00 37.32 3.32
5153 5230 6.884836 GGACAGAGGGAGTACATAACAAAAAT 59.115 38.462 0.00 0.00 0.00 1.82
5184 5261 4.974591 ACAGCTTGCAAAACGATCTTATC 58.025 39.130 0.00 0.00 0.00 1.75
5216 5293 9.062524 TCCGTCCCATAATATAAGATTGTTTTG 57.937 33.333 0.00 0.00 0.00 2.44
5222 5299 6.269194 TCCCTCCGTCCCATAATATAAGATT 58.731 40.000 0.00 0.00 0.00 2.40
5240 5317 7.392393 TGTTTTATTTTGCTAAGTACTCCCTCC 59.608 37.037 0.00 0.00 0.00 4.30
5242 5319 8.700439 TTGTTTTATTTTGCTAAGTACTCCCT 57.300 30.769 0.00 0.00 0.00 4.20
5281 5358 5.627499 ACATTTCTTCATGTACAACGCAT 57.373 34.783 0.00 0.00 35.51 4.73
5308 5385 4.299586 TGTGGAATCAGGCAAGATAACA 57.700 40.909 0.00 0.00 0.00 2.41
5309 5386 5.841957 AATGTGGAATCAGGCAAGATAAC 57.158 39.130 0.00 0.00 0.00 1.89
5469 5546 4.882842 TGAAGACTGTGGTTATGCTACA 57.117 40.909 0.00 0.00 37.06 2.74
5486 5563 5.051508 GCTTGTGTGTTTGTAATGCTTGAAG 60.052 40.000 0.00 0.00 0.00 3.02
5492 5569 4.324402 GCATAGCTTGTGTGTTTGTAATGC 59.676 41.667 0.00 0.00 0.00 3.56
5498 5575 1.535028 TCCGCATAGCTTGTGTGTTTG 59.465 47.619 0.00 0.00 33.82 2.93
5642 5719 9.979270 CTACAATAGAAAAGCAACATAAGACAG 57.021 33.333 0.00 0.00 0.00 3.51
5662 5739 6.396829 AAGCTTCAAGTTTTGCTCTACAAT 57.603 33.333 0.00 0.00 38.31 2.71
5690 5767 3.703052 GGCCATCTTCCATTGAACTCAAT 59.297 43.478 0.00 0.00 46.62 2.57
5694 5771 3.094572 CAAGGCCATCTTCCATTGAACT 58.905 45.455 5.01 0.00 32.41 3.01
5819 5898 3.606687 ACCAACTTAAAGGCTACCGATG 58.393 45.455 0.00 0.00 0.00 3.84
5822 5901 3.368843 CGTTACCAACTTAAAGGCTACCG 59.631 47.826 0.00 0.00 0.00 4.02
5863 5942 5.409826 GTGTTGCTTCAATAGAGCACTTAGT 59.590 40.000 0.00 0.00 38.37 2.24
5866 5945 4.136796 TGTGTTGCTTCAATAGAGCACTT 58.863 39.130 0.00 0.00 38.37 3.16
5871 5950 5.695851 AACCTTGTGTTGCTTCAATAGAG 57.304 39.130 0.00 0.00 35.31 2.43
5904 5983 8.764524 AAGTGTTCTAGCTATAAGTTGAAGTG 57.235 34.615 0.00 0.00 0.00 3.16
6020 6099 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
6021 6100 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
6022 6101 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
6023 6102 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
6024 6103 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
6025 6104 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
6058 6137 9.524106 CACATTTTAGTGTTAGATACATCCGTA 57.476 33.333 0.00 0.00 39.39 4.02
6059 6138 8.255206 TCACATTTTAGTGTTAGATACATCCGT 58.745 33.333 0.00 0.00 39.39 4.69
6060 6139 8.642908 TCACATTTTAGTGTTAGATACATCCG 57.357 34.615 0.00 0.00 39.39 4.18
6104 6183 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
6105 6184 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
6106 6185 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
6107 6186 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
6108 6187 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
6109 6188 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
6110 6189 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
6111 6190 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
6112 6191 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
6113 6192 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
6114 6193 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
6115 6194 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
6116 6195 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
6117 6196 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
6118 6197 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
6119 6198 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
6120 6199 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
6121 6200 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
6122 6201 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
6123 6202 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
6124 6203 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
6125 6204 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
6126 6205 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
6127 6206 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
6128 6207 0.842635 TCTAGTACTCCCTCCGTCCC 59.157 60.000 0.00 0.00 0.00 4.46
6129 6208 1.490069 AGTCTAGTACTCCCTCCGTCC 59.510 57.143 0.00 0.00 30.33 4.79
6130 6209 2.563702 CAGTCTAGTACTCCCTCCGTC 58.436 57.143 0.00 0.00 35.76 4.79
6131 6210 1.408544 GCAGTCTAGTACTCCCTCCGT 60.409 57.143 0.00 0.00 35.76 4.69
6132 6211 1.310904 GCAGTCTAGTACTCCCTCCG 58.689 60.000 0.00 0.00 35.76 4.63
6133 6212 2.303175 CTGCAGTCTAGTACTCCCTCC 58.697 57.143 5.25 0.00 35.76 4.30
6134 6213 3.007473 ACTGCAGTCTAGTACTCCCTC 57.993 52.381 15.25 0.00 35.76 4.30
6135 6214 3.524380 ACTACTGCAGTCTAGTACTCCCT 59.476 47.826 25.56 0.00 35.76 4.20
6136 6215 3.888583 ACTACTGCAGTCTAGTACTCCC 58.111 50.000 25.56 0.00 35.76 4.30
6137 6216 6.527423 AGATACTACTGCAGTCTAGTACTCC 58.473 44.000 24.92 18.16 38.80 3.85
6138 6217 8.579006 TCTAGATACTACTGCAGTCTAGTACTC 58.421 40.741 24.92 21.50 38.80 2.59
6139 6218 8.481492 TCTAGATACTACTGCAGTCTAGTACT 57.519 38.462 24.92 23.14 38.80 2.73
6140 6219 9.199982 CTTCTAGATACTACTGCAGTCTAGTAC 57.800 40.741 24.92 19.21 38.80 2.73
6141 6220 8.926374 ACTTCTAGATACTACTGCAGTCTAGTA 58.074 37.037 25.56 25.04 38.80 1.82
6142 6221 7.798071 ACTTCTAGATACTACTGCAGTCTAGT 58.202 38.462 25.56 23.68 38.80 2.57
6143 6222 9.419297 CTACTTCTAGATACTACTGCAGTCTAG 57.581 40.741 25.56 24.45 38.80 2.43
6144 6223 8.926374 ACTACTTCTAGATACTACTGCAGTCTA 58.074 37.037 25.56 16.52 38.80 2.59
6262 6342 7.886629 ACCATCAAATATCAGCTTACACATT 57.113 32.000 0.00 0.00 0.00 2.71
6310 6395 8.491152 CGAGCACTTCATAGGTTATCATTTTAG 58.509 37.037 0.00 0.00 0.00 1.85
6339 6424 9.127277 GGCCAAACTTAACATACCAAGATATTA 57.873 33.333 0.00 0.00 0.00 0.98
6518 6604 3.221771 TGCACCAACTTTTACAGATGCT 58.778 40.909 0.00 0.00 33.03 3.79
6858 6944 8.922676 CAGAATCTGAAATTTTCATTGAAGGTG 58.077 33.333 12.04 0.00 39.30 4.00
7097 7183 4.952335 AGAAGGCCTTATTCACAAATGGAG 59.048 41.667 20.54 0.00 0.00 3.86
7100 7186 5.649782 ACAGAAGGCCTTATTCACAAATG 57.350 39.130 20.54 2.89 0.00 2.32
7116 7202 8.023706 GCCAGTCTAAAGGAAATTAAACAGAAG 58.976 37.037 0.00 0.00 0.00 2.85
7117 7203 7.308348 CGCCAGTCTAAAGGAAATTAAACAGAA 60.308 37.037 0.00 0.00 0.00 3.02
7119 7205 6.314784 CGCCAGTCTAAAGGAAATTAAACAG 58.685 40.000 0.00 0.00 0.00 3.16
7120 7206 5.335348 GCGCCAGTCTAAAGGAAATTAAACA 60.335 40.000 0.00 0.00 0.00 2.83
7121 7207 5.093457 GCGCCAGTCTAAAGGAAATTAAAC 58.907 41.667 0.00 0.00 0.00 2.01
7123 7209 4.155280 GTGCGCCAGTCTAAAGGAAATTAA 59.845 41.667 4.18 0.00 0.00 1.40
7124 7210 3.687698 GTGCGCCAGTCTAAAGGAAATTA 59.312 43.478 4.18 0.00 0.00 1.40
7125 7211 2.488153 GTGCGCCAGTCTAAAGGAAATT 59.512 45.455 4.18 0.00 0.00 1.82
7126 7212 2.084546 GTGCGCCAGTCTAAAGGAAAT 58.915 47.619 4.18 0.00 0.00 2.17
7127 7213 1.071699 AGTGCGCCAGTCTAAAGGAAA 59.928 47.619 4.18 0.00 0.00 3.13
7128 7214 0.685097 AGTGCGCCAGTCTAAAGGAA 59.315 50.000 4.18 0.00 0.00 3.36
7129 7215 0.685097 AAGTGCGCCAGTCTAAAGGA 59.315 50.000 4.18 0.00 0.00 3.36
7130 7216 1.523758 AAAGTGCGCCAGTCTAAAGG 58.476 50.000 4.18 0.00 0.00 3.11
7131 7217 4.154195 ACATTAAAGTGCGCCAGTCTAAAG 59.846 41.667 4.18 0.00 0.00 1.85
7132 7218 4.069304 ACATTAAAGTGCGCCAGTCTAAA 58.931 39.130 4.18 0.00 0.00 1.85
7133 7219 3.670625 ACATTAAAGTGCGCCAGTCTAA 58.329 40.909 4.18 0.00 0.00 2.10
7134 7220 3.328382 ACATTAAAGTGCGCCAGTCTA 57.672 42.857 4.18 0.00 0.00 2.59
7135 7221 2.185004 ACATTAAAGTGCGCCAGTCT 57.815 45.000 4.18 0.00 0.00 3.24
7136 7222 2.979813 CAAACATTAAAGTGCGCCAGTC 59.020 45.455 4.18 0.00 0.00 3.51
7137 7223 2.288152 CCAAACATTAAAGTGCGCCAGT 60.288 45.455 4.18 0.00 0.00 4.00
7138 7224 2.288152 ACCAAACATTAAAGTGCGCCAG 60.288 45.455 4.18 0.00 0.00 4.85
7156 7242 7.999457 GTCAAGAATAGGACTTGGCACACCA 62.999 48.000 0.00 0.00 45.54 4.17
7163 7257 5.765182 ACAAACAGTCAAGAATAGGACTTGG 59.235 40.000 0.00 0.00 42.22 3.61
7199 7294 2.133281 ATGTGGCACAGCACATACAT 57.867 45.000 26.04 2.34 41.80 2.29
7203 7300 1.687660 TGAAAATGTGGCACAGCACAT 59.312 42.857 26.04 5.59 41.80 3.21
7205 7302 2.063266 CATGAAAATGTGGCACAGCAC 58.937 47.619 26.04 16.17 41.80 4.40
7206 7303 1.962100 TCATGAAAATGTGGCACAGCA 59.038 42.857 26.04 19.44 41.80 4.41
7207 7304 2.229543 TCTCATGAAAATGTGGCACAGC 59.770 45.455 26.04 14.72 41.80 4.40
7208 7305 3.754850 TCTCTCATGAAAATGTGGCACAG 59.245 43.478 26.04 10.33 41.80 3.66
7248 7345 6.126863 ACAAGAGAATGTTTCCAGACCATA 57.873 37.500 0.00 0.00 0.00 2.74
7252 7349 6.931840 AGTCTAACAAGAGAATGTTTCCAGAC 59.068 38.462 11.08 11.08 41.92 3.51
7276 7373 4.583871 AGGGAAGTGAGCATAACTGAAAG 58.416 43.478 0.00 0.00 42.29 2.62
7297 7394 1.490574 CTCCTCCTCCAGGGTTGTAG 58.509 60.000 0.00 0.00 43.67 2.74
7335 7432 6.435591 TCCACTGAAACATAATATTGCCAACA 59.564 34.615 0.00 0.00 0.00 3.33
7344 7441 5.118990 GCAGAGCTCCACTGAAACATAATA 58.881 41.667 10.93 0.00 37.54 0.98
7345 7442 3.944015 GCAGAGCTCCACTGAAACATAAT 59.056 43.478 10.93 0.00 37.54 1.28
7346 7443 3.338249 GCAGAGCTCCACTGAAACATAA 58.662 45.455 10.93 0.00 37.54 1.90
7407 7515 7.102993 ACACAACTGCAGGTTTTTCTTTTAAT 58.897 30.769 19.93 0.00 35.74 1.40
7408 7516 6.459923 ACACAACTGCAGGTTTTTCTTTTAA 58.540 32.000 19.93 0.00 35.74 1.52
7409 7517 6.031751 ACACAACTGCAGGTTTTTCTTTTA 57.968 33.333 19.93 0.00 35.74 1.52
7439 7547 9.223099 GTAAATTACCAGCCAACTAGTAGAAAA 57.777 33.333 3.59 0.00 0.00 2.29
7465 7573 5.914635 ACAATACAACATTTTCTGTCAAGCG 59.085 36.000 0.00 0.00 36.98 4.68
7493 7601 4.084910 GCCATTAGCTGCACCTGAAGTG 62.085 54.545 1.02 0.00 43.80 3.16
7494 7602 1.952367 GCCATTAGCTGCACCTGAAGT 60.952 52.381 1.02 0.00 38.99 3.01
7495 7603 0.737219 GCCATTAGCTGCACCTGAAG 59.263 55.000 1.02 0.00 38.99 3.02
7496 7604 2.872408 GCCATTAGCTGCACCTGAA 58.128 52.632 1.02 0.00 38.99 3.02
7509 7617 6.127253 CCATTAACTTCTTGATGGAAGCCATT 60.127 38.462 0.00 0.00 45.26 3.16
7589 7697 1.362224 AAAGAAGCCTACCTGCTCCA 58.638 50.000 0.00 0.00 41.80 3.86
7667 7784 2.940410 CTGTTGGTGTAGAAACCGTTGT 59.060 45.455 0.00 0.00 43.73 3.32
7715 7833 5.679734 TCTGTTCTCTGAAGTTGATTTGC 57.320 39.130 0.00 0.00 0.00 3.68
7737 7855 5.247110 TCTCTTCTATCCAAGTCAACAGCTT 59.753 40.000 0.00 0.00 0.00 3.74
7745 7863 6.321181 ACAGACAGATCTCTTCTATCCAAGTC 59.679 42.308 0.00 0.00 27.13 3.01
7789 7907 7.599998 GCTGACAACAACAGGAATTTTATTGAT 59.400 33.333 0.00 0.00 36.09 2.57
7880 7999 1.532868 GCAAGCACCTGAGTTGTACAG 59.467 52.381 0.00 0.00 35.43 2.74
7904 8023 4.526970 AGTTTCTTTTTCTCTGAGGTGCA 58.473 39.130 4.59 0.00 0.00 4.57
7933 8052 3.063997 CACCTGCGTAAATTGATCTCACC 59.936 47.826 0.00 0.00 0.00 4.02
7959 8078 2.098443 GTCTTTCCCGTGCAAAGTTTCA 59.902 45.455 0.00 0.00 33.32 2.69
7961 8080 2.096248 TGTCTTTCCCGTGCAAAGTTT 58.904 42.857 0.00 0.00 33.32 2.66
8028 8200 5.517322 ACGGAGTACCATTCTTCTGATAC 57.483 43.478 0.00 0.00 41.94 2.24
8031 8203 4.884668 AAACGGAGTACCATTCTTCTGA 57.115 40.909 0.00 0.00 45.00 3.27
8059 8231 7.720074 ACGAGTCCTACATAAGATCACTATGAA 59.280 37.037 17.28 2.78 0.00 2.57
8092 8264 2.303311 GGGTCCTGCACTACTCTCTTTT 59.697 50.000 0.00 0.00 0.00 2.27
8093 8265 1.903183 GGGTCCTGCACTACTCTCTTT 59.097 52.381 0.00 0.00 0.00 2.52
8094 8266 1.077993 AGGGTCCTGCACTACTCTCTT 59.922 52.381 0.00 0.00 0.00 2.85
8095 8267 0.707616 AGGGTCCTGCACTACTCTCT 59.292 55.000 0.00 0.00 0.00 3.10
8096 8268 1.205893 CAAGGGTCCTGCACTACTCTC 59.794 57.143 0.00 0.00 0.00 3.20
8097 8269 1.270907 CAAGGGTCCTGCACTACTCT 58.729 55.000 0.00 0.00 0.00 3.24
8098 8270 0.977395 ACAAGGGTCCTGCACTACTC 59.023 55.000 0.00 0.00 0.00 2.59
8106 8288 2.576191 TCCCTGAATAACAAGGGTCCTG 59.424 50.000 7.60 0.00 37.82 3.86
8116 8298 4.986622 GTGCAACTCATTCCCTGAATAAC 58.013 43.478 0.00 0.00 32.14 1.89
8140 8322 3.565482 GCCAAGAGTGATTGTTGAAGACA 59.435 43.478 0.00 0.00 31.96 3.41
8259 8445 6.627087 TCTCATTTGATCCCAAGAGTACTT 57.373 37.500 0.00 0.00 36.73 2.24
8260 8446 6.627087 TTCTCATTTGATCCCAAGAGTACT 57.373 37.500 0.00 0.00 33.23 2.73
8261 8447 5.295540 GCTTCTCATTTGATCCCAAGAGTAC 59.704 44.000 0.00 0.00 33.23 2.73
8262 8448 5.431765 GCTTCTCATTTGATCCCAAGAGTA 58.568 41.667 0.00 0.00 33.23 2.59
8263 8449 4.268359 GCTTCTCATTTGATCCCAAGAGT 58.732 43.478 0.00 0.00 33.23 3.24
8264 8450 3.311871 CGCTTCTCATTTGATCCCAAGAG 59.688 47.826 0.00 0.00 33.23 2.85
8265 8451 3.273434 CGCTTCTCATTTGATCCCAAGA 58.727 45.455 0.00 0.00 33.23 3.02
8273 8459 0.250684 TGGTGGCGCTTCTCATTTGA 60.251 50.000 7.64 0.00 0.00 2.69
8361 8548 7.994194 AGATCTAGCACATTCTGGAATTTTTC 58.006 34.615 0.00 0.00 0.00 2.29
8403 8618 6.538021 AGATTCAGTCATCTAACAGTGAATGC 59.462 38.462 0.00 0.95 41.00 3.56
8509 8732 1.534595 GAAGCCTGCACAGTCAGAAAG 59.465 52.381 0.00 0.00 36.19 2.62
8514 8737 0.181114 AACAGAAGCCTGCACAGTCA 59.819 50.000 0.00 0.00 44.16 3.41
8515 8738 1.801178 GTAACAGAAGCCTGCACAGTC 59.199 52.381 0.00 0.00 44.16 3.51
8523 8746 4.298626 TCATATCCCTGTAACAGAAGCCT 58.701 43.478 0.00 0.00 32.44 4.58
8526 8749 5.053145 GTGCTCATATCCCTGTAACAGAAG 58.947 45.833 0.00 0.00 32.44 2.85
8542 8765 4.693566 CCATCTTTGCAAAAATGTGCTCAT 59.306 37.500 21.01 0.00 45.17 2.90
8585 8826 4.934001 CAGCTTCAAGACTTGCAGATCTAA 59.066 41.667 17.63 1.69 0.00 2.10
8587 8828 3.336468 CAGCTTCAAGACTTGCAGATCT 58.664 45.455 17.63 4.44 0.00 2.75
8590 8831 1.417517 TCCAGCTTCAAGACTTGCAGA 59.582 47.619 17.63 2.62 0.00 4.26
8600 8841 2.665000 CTCCGGCTCCAGCTTCAA 59.335 61.111 0.00 0.00 41.70 2.69
8627 8868 2.203070 CTCCTGGTACATGGGCGC 60.203 66.667 0.00 0.00 38.20 6.53
8655 8896 0.105246 CCTGGAGGTCCCTGCTATCT 60.105 60.000 6.40 0.00 35.34 1.98
8661 8902 1.307343 ATGTCCCTGGAGGTCCCTG 60.307 63.158 0.00 0.00 36.75 4.45
8665 8906 1.839994 TCAATCATGTCCCTGGAGGTC 59.160 52.381 0.00 0.00 36.75 3.85
8672 8913 2.024941 GGGGAAAGTCAATCATGTCCCT 60.025 50.000 12.16 0.00 43.66 4.20
8691 8932 2.292267 CGAGACATGAAATTCAGGGGG 58.708 52.381 12.39 0.00 31.56 5.40
8694 8935 3.264947 TGAGCGAGACATGAAATTCAGG 58.735 45.455 6.06 6.06 33.86 3.86
8695 8936 4.934075 TTGAGCGAGACATGAAATTCAG 57.066 40.909 0.00 0.00 0.00 3.02
8696 8937 5.885230 AATTGAGCGAGACATGAAATTCA 57.115 34.783 0.00 0.00 0.00 2.57
8697 8938 6.250104 GTGAAATTGAGCGAGACATGAAATTC 59.750 38.462 0.00 0.00 0.00 2.17
8698 8939 6.088824 GTGAAATTGAGCGAGACATGAAATT 58.911 36.000 0.00 0.00 0.00 1.82
8699 8940 5.181811 TGTGAAATTGAGCGAGACATGAAAT 59.818 36.000 0.00 0.00 0.00 2.17
8700 8941 4.514816 TGTGAAATTGAGCGAGACATGAAA 59.485 37.500 0.00 0.00 0.00 2.69
8701 8942 4.064388 TGTGAAATTGAGCGAGACATGAA 58.936 39.130 0.00 0.00 0.00 2.57
8702 8943 3.663025 TGTGAAATTGAGCGAGACATGA 58.337 40.909 0.00 0.00 0.00 3.07
8703 8944 4.611310 ATGTGAAATTGAGCGAGACATG 57.389 40.909 0.00 0.00 0.00 3.21
8704 8945 6.932356 AATATGTGAAATTGAGCGAGACAT 57.068 33.333 0.00 0.00 0.00 3.06
8736 8977 8.837099 AGCTATAGAATGAGGTAGATATTGCT 57.163 34.615 3.21 0.00 30.49 3.91
8769 9046 1.289109 ATACGACGCGCACTTTGCTT 61.289 50.000 5.73 0.00 42.25 3.91
8777 9054 2.877113 CCACGAATACGACGCGCA 60.877 61.111 5.73 0.00 42.66 6.09
8807 9084 2.094659 AAACTCGACGCTGCCATCG 61.095 57.895 13.15 13.15 39.72 3.84
8843 9148 2.539547 CCAATAAAGCAGCATTCCGTCG 60.540 50.000 0.00 0.00 0.00 5.12
8922 9297 9.474313 TCAAATGCTACAAAATATCCTTACCTT 57.526 29.630 0.00 0.00 0.00 3.50
8939 11551 5.067273 TCTTTTTCGGGTTCTCAAATGCTA 58.933 37.500 0.00 0.00 0.00 3.49
8943 11555 6.816136 ACATTTCTTTTTCGGGTTCTCAAAT 58.184 32.000 0.00 0.00 0.00 2.32
9088 12007 8.235226 GCTAAATCGTCTAGCGCCATATATATA 58.765 37.037 2.29 0.00 41.07 0.86
9153 12072 7.839705 ACCATCTACCGTCATATATAATGGAGT 59.160 37.037 0.68 0.00 35.73 3.85
9401 12326 5.471456 CCTTCTATTGAGCAATATGTCCCAC 59.529 44.000 3.61 0.00 33.29 4.61
9472 12397 5.528043 ACACAGAGGCTATCAAGTATCAG 57.472 43.478 0.00 0.00 0.00 2.90
9498 12423 4.214545 CGTGTTATTGAAGTGCTTTACCCA 59.785 41.667 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.