Multiple sequence alignment - TraesCS2B01G480100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G480100 chr2B 100.000 3293 0 0 1 3293 677354687 677357979 0.000000e+00 6082
1 TraesCS2B01G480100 chr2B 91.558 308 22 2 943 1249 675206446 675206750 3.930000e-114 422
2 TraesCS2B01G480100 chr2B 84.112 321 26 12 644 946 675200316 675200629 1.500000e-73 287
3 TraesCS2B01G480100 chr2B 87.324 213 24 2 442 652 675199894 675200105 1.180000e-59 241
4 TraesCS2B01G480100 chr2B 97.794 136 3 0 2883 3018 697119144 697119009 5.490000e-58 235
5 TraesCS2B01G480100 chr2B 85.782 211 23 6 1 205 675199433 675199642 1.990000e-52 217
6 TraesCS2B01G480100 chr2D 90.594 2626 158 37 320 2886 565403126 565405721 0.000000e+00 3398
7 TraesCS2B01G480100 chr2D 94.326 282 10 5 3015 3293 565405718 565405996 8.440000e-116 427
8 TraesCS2B01G480100 chr2D 87.736 212 15 8 1 205 565402875 565403082 1.530000e-58 237
9 TraesCS2B01G480100 chr2D 90.541 74 7 0 1586 1659 565404490 565404563 7.520000e-17 99
10 TraesCS2B01G480100 chr2A 90.385 2028 92 39 448 2423 705846539 705848515 0.000000e+00 2569
11 TraesCS2B01G480100 chr2A 87.619 210 20 5 1 205 705846097 705846305 4.250000e-59 239
12 TraesCS2B01G480100 chr7B 97.902 143 1 1 2876 3018 174671098 174671238 2.540000e-61 246
13 TraesCS2B01G480100 chr5B 97.710 131 3 0 2886 3016 547830483 547830613 3.310000e-55 226
14 TraesCS2B01G480100 chr6D 95.588 136 6 0 2882 3017 346959682 346959817 5.530000e-53 219
15 TraesCS2B01G480100 chr6D 95.420 131 6 0 2886 3016 296196554 296196684 3.330000e-50 209
16 TraesCS2B01G480100 chr4B 95.522 134 6 0 2883 3016 53199990 53200123 7.160000e-52 215
17 TraesCS2B01G480100 chr6B 94.853 136 6 1 2883 3018 95972694 95972560 9.260000e-51 211
18 TraesCS2B01G480100 chr1D 93.893 131 8 0 2886 3016 121241936 121241806 7.210000e-47 198
19 TraesCS2B01G480100 chrUn 93.182 132 8 1 2886 3016 101542583 101542714 3.350000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G480100 chr2B 677354687 677357979 3292 False 6082.000000 6082 100.000000 1 3293 1 chr2B.!!$F2 3292
1 TraesCS2B01G480100 chr2B 675199433 675200629 1196 False 248.333333 287 85.739333 1 946 3 chr2B.!!$F3 945
2 TraesCS2B01G480100 chr2D 565402875 565405996 3121 False 1040.250000 3398 90.799250 1 3293 4 chr2D.!!$F1 3292
3 TraesCS2B01G480100 chr2A 705846097 705848515 2418 False 1404.000000 2569 89.002000 1 2423 2 chr2A.!!$F1 2422

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 327 0.102663 GCGGAGGGAGTACTAGTTGC 59.897 60.0 0.0 0.0 0.00 4.17 F
448 533 0.102663 TGCTTCCACGACAACACGTA 59.897 50.0 0.0 0.0 44.76 3.57 F
1757 2149 0.250467 CCATCTCCATTACCGCCAGG 60.250 60.0 0.0 0.0 45.13 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2121 2516 0.164647 GCAGTGCACGATCAACTGAC 59.835 55.0 11.09 6.38 0.0 3.51 R
2154 2549 0.964860 TGCCGGGGTCATGAAACATG 60.965 55.0 2.18 5.51 0.0 3.21 R
2910 3323 0.047802 ATCCCCTCCAATCCCCTTCA 59.952 55.0 0.00 0.00 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.990060 CGAGGCTCAAAGGAGGGGA 60.990 63.158 15.95 0.00 41.67 4.81
76 81 2.380064 TTTGTGTTCCCATGCCTCTT 57.620 45.000 0.00 0.00 0.00 2.85
112 118 7.225725 TCGTCCCCTTCAAAGAAGTAAATTTA 58.774 34.615 6.08 0.00 0.00 1.40
117 123 7.450323 CCCCTTCAAAGAAGTAAATTTAGGACA 59.550 37.037 0.00 0.00 0.00 4.02
118 124 9.025041 CCCTTCAAAGAAGTAAATTTAGGACAT 57.975 33.333 0.00 0.00 0.00 3.06
173 179 4.827692 TCCTCGCTCTTATTTGTGCTTAA 58.172 39.130 0.00 0.00 0.00 1.85
178 184 8.345565 CCTCGCTCTTATTTGTGCTTAATTATT 58.654 33.333 0.00 0.00 0.00 1.40
192 200 7.547370 GTGCTTAATTATTTATGGTGTTTGCCA 59.453 33.333 0.00 0.00 43.48 4.92
205 213 6.306199 TGGTGTTTGCCATATATCTTGCTAT 58.694 36.000 0.00 0.00 32.81 2.97
207 215 6.127897 GGTGTTTGCCATATATCTTGCTATCC 60.128 42.308 0.00 0.00 0.00 2.59
211 262 5.982356 TGCCATATATCTTGCTATCCACTC 58.018 41.667 0.00 0.00 0.00 3.51
215 266 6.157645 CCATATATCTTGCTATCCACTCCCTT 59.842 42.308 0.00 0.00 0.00 3.95
220 271 0.389757 GCTATCCACTCCCTTCGTCC 59.610 60.000 0.00 0.00 0.00 4.79
234 285 4.101119 CCCTTCGTCCCATAATGTAAGACT 59.899 45.833 0.00 0.00 0.00 3.24
238 289 7.120726 CCTTCGTCCCATAATGTAAGACTTTTT 59.879 37.037 0.00 0.00 0.00 1.94
269 320 1.700955 TTATGAGGCGGAGGGAGTAC 58.299 55.000 0.00 0.00 0.00 2.73
271 322 0.851469 ATGAGGCGGAGGGAGTACTA 59.149 55.000 0.00 0.00 0.00 1.82
272 323 0.183014 TGAGGCGGAGGGAGTACTAG 59.817 60.000 0.00 0.00 0.00 2.57
274 325 0.630134 AGGCGGAGGGAGTACTAGTT 59.370 55.000 0.00 0.00 0.00 2.24
275 326 0.745468 GGCGGAGGGAGTACTAGTTG 59.255 60.000 0.00 0.00 0.00 3.16
276 327 0.102663 GCGGAGGGAGTACTAGTTGC 59.897 60.000 0.00 0.00 0.00 4.17
277 328 1.765230 CGGAGGGAGTACTAGTTGCT 58.235 55.000 0.00 0.00 0.00 3.91
278 329 2.100989 CGGAGGGAGTACTAGTTGCTT 58.899 52.381 0.00 0.00 0.00 3.91
279 330 2.496470 CGGAGGGAGTACTAGTTGCTTT 59.504 50.000 0.00 0.00 0.00 3.51
280 331 3.676324 CGGAGGGAGTACTAGTTGCTTTG 60.676 52.174 0.00 0.00 0.00 2.77
281 332 3.263261 GAGGGAGTACTAGTTGCTTTGC 58.737 50.000 0.00 0.00 0.00 3.68
282 333 2.907042 AGGGAGTACTAGTTGCTTTGCT 59.093 45.455 0.00 0.00 0.00 3.91
283 334 3.055747 AGGGAGTACTAGTTGCTTTGCTC 60.056 47.826 0.00 0.00 0.00 4.26
284 335 3.306780 GGGAGTACTAGTTGCTTTGCTCA 60.307 47.826 0.00 0.00 0.00 4.26
285 336 4.315803 GGAGTACTAGTTGCTTTGCTCAA 58.684 43.478 0.00 0.00 0.00 3.02
286 337 4.152580 GGAGTACTAGTTGCTTTGCTCAAC 59.847 45.833 0.00 0.00 42.92 3.18
292 343 3.923017 GTTGCTTTGCTCAACTATGGT 57.077 42.857 0.00 0.00 40.31 3.55
293 344 3.568538 GTTGCTTTGCTCAACTATGGTG 58.431 45.455 0.00 0.00 40.31 4.17
294 345 2.862541 TGCTTTGCTCAACTATGGTGT 58.137 42.857 0.00 0.00 0.00 4.16
295 346 2.813754 TGCTTTGCTCAACTATGGTGTC 59.186 45.455 0.00 0.00 0.00 3.67
296 347 3.077359 GCTTTGCTCAACTATGGTGTCT 58.923 45.455 0.00 0.00 0.00 3.41
297 348 3.126000 GCTTTGCTCAACTATGGTGTCTC 59.874 47.826 0.00 0.00 0.00 3.36
298 349 3.334583 TTGCTCAACTATGGTGTCTCC 57.665 47.619 0.00 0.00 0.00 3.71
299 350 2.540383 TGCTCAACTATGGTGTCTCCT 58.460 47.619 0.00 0.00 37.07 3.69
300 351 2.497675 TGCTCAACTATGGTGTCTCCTC 59.502 50.000 0.00 0.00 37.07 3.71
301 352 2.763448 GCTCAACTATGGTGTCTCCTCT 59.237 50.000 0.00 0.00 37.07 3.69
302 353 3.430098 GCTCAACTATGGTGTCTCCTCTG 60.430 52.174 0.00 0.00 37.07 3.35
303 354 3.766591 CTCAACTATGGTGTCTCCTCTGT 59.233 47.826 0.00 0.00 37.07 3.41
304 355 4.160329 TCAACTATGGTGTCTCCTCTGTT 58.840 43.478 0.00 0.00 37.07 3.16
305 356 4.593206 TCAACTATGGTGTCTCCTCTGTTT 59.407 41.667 0.00 0.00 37.07 2.83
306 357 4.543590 ACTATGGTGTCTCCTCTGTTTG 57.456 45.455 0.00 0.00 37.07 2.93
307 358 3.904339 ACTATGGTGTCTCCTCTGTTTGT 59.096 43.478 0.00 0.00 37.07 2.83
308 359 5.084519 ACTATGGTGTCTCCTCTGTTTGTA 58.915 41.667 0.00 0.00 37.07 2.41
309 360 5.721960 ACTATGGTGTCTCCTCTGTTTGTAT 59.278 40.000 0.00 0.00 37.07 2.29
310 361 6.895756 ACTATGGTGTCTCCTCTGTTTGTATA 59.104 38.462 0.00 0.00 37.07 1.47
311 362 6.814954 ATGGTGTCTCCTCTGTTTGTATAT 57.185 37.500 0.00 0.00 37.07 0.86
312 363 6.620877 TGGTGTCTCCTCTGTTTGTATATT 57.379 37.500 0.00 0.00 37.07 1.28
313 364 7.016153 TGGTGTCTCCTCTGTTTGTATATTT 57.984 36.000 0.00 0.00 37.07 1.40
314 365 7.458397 TGGTGTCTCCTCTGTTTGTATATTTT 58.542 34.615 0.00 0.00 37.07 1.82
315 366 7.390440 TGGTGTCTCCTCTGTTTGTATATTTTG 59.610 37.037 0.00 0.00 37.07 2.44
316 367 7.606456 GGTGTCTCCTCTGTTTGTATATTTTGA 59.394 37.037 0.00 0.00 0.00 2.69
317 368 8.660373 GTGTCTCCTCTGTTTGTATATTTTGAG 58.340 37.037 0.00 0.00 0.00 3.02
318 369 7.334421 TGTCTCCTCTGTTTGTATATTTTGAGC 59.666 37.037 0.00 0.00 0.00 4.26
319 370 7.334421 GTCTCCTCTGTTTGTATATTTTGAGCA 59.666 37.037 0.00 0.00 0.00 4.26
320 371 7.882791 TCTCCTCTGTTTGTATATTTTGAGCAA 59.117 33.333 0.00 0.00 0.00 3.91
321 372 8.579850 TCCTCTGTTTGTATATTTTGAGCAAT 57.420 30.769 0.00 0.00 0.00 3.56
322 373 9.679661 TCCTCTGTTTGTATATTTTGAGCAATA 57.320 29.630 0.00 0.00 0.00 1.90
339 390 8.408043 TGAGCAATATTTATCCATAACCTTGG 57.592 34.615 0.00 0.00 38.18 3.61
352 403 7.610865 TCCATAACCTTGGATTTGCTAAAAAG 58.389 34.615 0.00 0.00 40.90 2.27
390 472 7.601886 ACAGTAACATATTATCATCTCTGCAGC 59.398 37.037 9.47 0.00 0.00 5.25
391 473 7.064371 CAGTAACATATTATCATCTCTGCAGCC 59.936 40.741 9.47 0.00 0.00 4.85
392 474 5.494390 ACATATTATCATCTCTGCAGCCA 57.506 39.130 9.47 0.00 0.00 4.75
394 476 5.704515 ACATATTATCATCTCTGCAGCCAAC 59.295 40.000 9.47 0.00 0.00 3.77
395 477 2.229675 TATCATCTCTGCAGCCAACG 57.770 50.000 9.47 0.00 0.00 4.10
405 487 0.179215 GCAGCCAACGTCTTTGATCG 60.179 55.000 0.00 0.00 37.39 3.69
408 490 0.452784 GCCAACGTCTTTGATCGTGC 60.453 55.000 0.00 0.00 40.19 5.34
418 500 0.468226 TTGATCGTGCAGATACCCCC 59.532 55.000 0.00 0.00 40.26 5.40
445 530 0.730265 TGTTGCTTCCACGACAACAC 59.270 50.000 3.83 0.00 46.33 3.32
446 531 0.315869 GTTGCTTCCACGACAACACG 60.316 55.000 0.00 0.00 42.50 4.49
448 533 0.102663 TGCTTCCACGACAACACGTA 59.897 50.000 0.00 0.00 44.76 3.57
449 534 0.505655 GCTTCCACGACAACACGTAC 59.494 55.000 0.00 0.00 44.76 3.67
518 643 1.612991 CGATGTTTCACACCCCATGGA 60.613 52.381 15.22 0.00 34.81 3.41
519 644 1.818674 GATGTTTCACACCCCATGGAC 59.181 52.381 15.22 0.49 34.81 4.02
523 648 0.776810 TTCACACCCCATGGACACAT 59.223 50.000 15.22 0.00 37.99 3.21
542 667 1.890876 TGACATCAAAGGGTGAACGG 58.109 50.000 0.00 0.00 40.50 4.44
583 708 2.302157 GGAGGAGAAAACGAGGAAGGAA 59.698 50.000 0.00 0.00 0.00 3.36
656 1004 1.167851 GCAGCTATCACAACAAGGCA 58.832 50.000 0.00 0.00 0.00 4.75
688 1038 4.583489 CGAAGCTTCCTTGGGTAGATAGTA 59.417 45.833 20.62 0.00 0.00 1.82
689 1039 5.507650 CGAAGCTTCCTTGGGTAGATAGTAC 60.508 48.000 20.62 0.00 0.00 2.73
710 1068 8.281212 AGTACAATAAATTTGCCCTCTACAAG 57.719 34.615 0.00 0.00 0.00 3.16
711 1069 5.965922 ACAATAAATTTGCCCTCTACAAGC 58.034 37.500 0.00 0.00 0.00 4.01
712 1070 5.716703 ACAATAAATTTGCCCTCTACAAGCT 59.283 36.000 0.00 0.00 0.00 3.74
713 1071 6.889722 ACAATAAATTTGCCCTCTACAAGCTA 59.110 34.615 0.00 0.00 0.00 3.32
714 1072 7.067494 ACAATAAATTTGCCCTCTACAAGCTAG 59.933 37.037 0.00 0.00 0.00 3.42
715 1073 4.576330 AATTTGCCCTCTACAAGCTAGT 57.424 40.909 0.00 0.00 0.00 2.57
716 1074 5.693769 AATTTGCCCTCTACAAGCTAGTA 57.306 39.130 0.00 0.00 0.00 1.82
717 1075 4.467198 TTTGCCCTCTACAAGCTAGTAC 57.533 45.455 0.00 0.00 0.00 2.73
718 1076 3.383698 TGCCCTCTACAAGCTAGTACT 57.616 47.619 0.00 0.00 0.00 2.73
719 1077 4.515028 TGCCCTCTACAAGCTAGTACTA 57.485 45.455 1.89 1.89 0.00 1.82
721 1079 4.888239 TGCCCTCTACAAGCTAGTACTAAG 59.112 45.833 3.76 0.00 0.00 2.18
801 1167 7.214381 TCCTAAATTAATCACACTATCCACCG 58.786 38.462 0.00 0.00 0.00 4.94
813 1179 7.065324 TCACACTATCCACCGAAATTTAATCAC 59.935 37.037 0.00 0.00 0.00 3.06
866 1239 8.132995 TGCATCAATTTTGCTCATTATCAGTAG 58.867 33.333 10.57 0.00 40.77 2.57
885 1259 7.145985 TCAGTAGTAGCAATAATTAGGCTTCG 58.854 38.462 16.73 3.57 39.01 3.79
901 1275 8.770438 TTAGGCTTCGAAATAATTTTTGCATT 57.230 26.923 0.00 0.00 0.00 3.56
946 1320 5.234466 AGATAGCCACCTGTATTCCAATC 57.766 43.478 0.00 0.00 0.00 2.67
947 1321 4.910304 AGATAGCCACCTGTATTCCAATCT 59.090 41.667 0.00 0.00 0.00 2.40
948 1322 3.287867 AGCCACCTGTATTCCAATCTG 57.712 47.619 0.00 0.00 0.00 2.90
949 1323 2.846206 AGCCACCTGTATTCCAATCTGA 59.154 45.455 0.00 0.00 0.00 3.27
950 1324 3.118112 AGCCACCTGTATTCCAATCTGAG 60.118 47.826 0.00 0.00 0.00 3.35
968 1354 8.352201 CAATCTGAGAATAAACCAGACAAACAA 58.648 33.333 0.00 0.00 0.00 2.83
972 1358 8.408043 TGAGAATAAACCAGACAAACAATGAT 57.592 30.769 0.00 0.00 0.00 2.45
978 1364 3.250762 ACCAGACAAACAATGATGTCACG 59.749 43.478 19.72 13.50 46.55 4.35
987 1373 2.358615 GATGTCACGGCACCTGCA 60.359 61.111 0.00 0.00 44.36 4.41
994 1380 0.457166 CACGGCACCTGCAATTGATG 60.457 55.000 10.34 2.45 44.36 3.07
995 1381 1.140161 CGGCACCTGCAATTGATGG 59.860 57.895 10.34 12.26 44.36 3.51
1027 1413 1.271597 ACAAAGTCAGATCCACCAGCC 60.272 52.381 0.00 0.00 0.00 4.85
1028 1414 1.004044 CAAAGTCAGATCCACCAGCCT 59.996 52.381 0.00 0.00 0.00 4.58
1031 1417 1.690633 TCAGATCCACCAGCCTCCC 60.691 63.158 0.00 0.00 0.00 4.30
1032 1418 2.367512 AGATCCACCAGCCTCCCC 60.368 66.667 0.00 0.00 0.00 4.81
1033 1419 2.692368 GATCCACCAGCCTCCCCA 60.692 66.667 0.00 0.00 0.00 4.96
1088 1477 4.367039 TCCAAGAAAAGTCGGGATTCTT 57.633 40.909 0.00 0.00 42.49 2.52
1636 2028 2.343101 CTCCGGCGATGACAAACTTTA 58.657 47.619 9.30 0.00 0.00 1.85
1731 2123 4.393155 CACGGCAGCAGCTACCCA 62.393 66.667 6.04 0.00 41.70 4.51
1733 2125 4.393155 CGGCAGCAGCTACCCACA 62.393 66.667 6.04 0.00 41.70 4.17
1757 2149 0.250467 CCATCTCCATTACCGCCAGG 60.250 60.000 0.00 0.00 45.13 4.45
1839 2231 2.027625 GACGGGCTCACTGTTTCCG 61.028 63.158 0.00 0.00 45.42 4.30
1845 2237 0.596600 GCTCACTGTTTCCGTCGTCA 60.597 55.000 0.00 0.00 0.00 4.35
1973 2368 0.326048 AGCAGCTATCCACCTCCACT 60.326 55.000 0.00 0.00 0.00 4.00
2022 2417 3.009115 GGCTACCCACCTCCAGCA 61.009 66.667 0.00 0.00 35.69 4.41
2058 2453 3.721706 CCGGCTTCCAGCTTCCCT 61.722 66.667 0.00 0.00 41.99 4.20
2112 2507 0.390472 CCGGCTCAGAGTTTCCTGTC 60.390 60.000 0.00 0.00 35.71 3.51
2121 2516 3.812053 CAGAGTTTCCTGTCTTGTCAAGG 59.188 47.826 12.66 0.00 0.00 3.61
2163 2558 4.360643 ATGGCGCCCATGTTTCAT 57.639 50.000 26.77 4.61 43.39 2.57
2167 2562 1.139520 GCGCCCATGTTTCATGACC 59.860 57.895 10.75 0.00 0.00 4.02
2171 2566 1.037030 CCCATGTTTCATGACCCCGG 61.037 60.000 10.75 0.00 0.00 5.73
2174 2569 0.680921 ATGTTTCATGACCCCGGCAG 60.681 55.000 0.00 0.00 0.00 4.85
2194 2589 4.404098 CTTACCCGCCGGTGCCTT 62.404 66.667 10.27 0.00 44.40 4.35
2430 2842 4.183865 TCGCAGTGATTTCCAAGATACAG 58.816 43.478 0.00 0.00 0.00 2.74
2498 2910 3.630204 CTCGCAAGCACTCACGTT 58.370 55.556 0.00 0.00 37.18 3.99
2499 2911 1.488957 CTCGCAAGCACTCACGTTC 59.511 57.895 0.00 0.00 37.18 3.95
2502 2914 1.082496 GCAAGCACTCACGTTCTGC 60.082 57.895 0.00 0.00 0.00 4.26
2504 2916 1.783284 CAAGCACTCACGTTCTGCTA 58.217 50.000 10.87 0.00 40.43 3.49
2506 2918 2.738846 CAAGCACTCACGTTCTGCTATT 59.261 45.455 10.87 0.00 40.43 1.73
2507 2919 3.868757 AGCACTCACGTTCTGCTATTA 57.131 42.857 9.15 0.00 39.52 0.98
2509 2921 4.566004 AGCACTCACGTTCTGCTATTAAA 58.434 39.130 9.15 0.00 39.52 1.52
2510 2922 4.994852 AGCACTCACGTTCTGCTATTAAAA 59.005 37.500 9.15 0.00 39.52 1.52
2511 2923 5.080068 GCACTCACGTTCTGCTATTAAAAC 58.920 41.667 0.00 0.00 0.00 2.43
2512 2924 5.107065 GCACTCACGTTCTGCTATTAAAACT 60.107 40.000 0.00 0.00 0.00 2.66
2513 2925 6.565999 GCACTCACGTTCTGCTATTAAAACTT 60.566 38.462 0.00 0.00 0.00 2.66
2514 2926 7.352739 CACTCACGTTCTGCTATTAAAACTTT 58.647 34.615 0.00 0.00 0.00 2.66
2515 2927 7.855904 CACTCACGTTCTGCTATTAAAACTTTT 59.144 33.333 0.00 0.00 0.00 2.27
2516 2928 7.855904 ACTCACGTTCTGCTATTAAAACTTTTG 59.144 33.333 0.00 0.00 0.00 2.44
2517 2929 7.699566 TCACGTTCTGCTATTAAAACTTTTGT 58.300 30.769 0.00 0.00 0.00 2.83
2518 2930 8.828644 TCACGTTCTGCTATTAAAACTTTTGTA 58.171 29.630 0.00 0.00 0.00 2.41
2519 2931 9.103048 CACGTTCTGCTATTAAAACTTTTGTAG 57.897 33.333 0.00 1.78 0.00 2.74
2520 2932 8.833493 ACGTTCTGCTATTAAAACTTTTGTAGT 58.167 29.630 0.00 0.00 39.32 2.73
2521 2933 9.103048 CGTTCTGCTATTAAAACTTTTGTAGTG 57.897 33.333 0.00 0.00 37.12 2.74
2522 2934 9.946165 GTTCTGCTATTAAAACTTTTGTAGTGT 57.054 29.630 0.00 0.00 37.12 3.55
2564 2976 8.619546 CATTCTTTAAAGTTTTCATTGGCCAAA 58.380 29.630 24.71 3.41 0.00 3.28
2571 2983 1.698506 TTCATTGGCCAAACTCGGTT 58.301 45.000 24.71 0.00 0.00 4.44
2572 2984 0.958091 TCATTGGCCAAACTCGGTTG 59.042 50.000 24.71 14.48 0.00 3.77
2593 3005 4.894784 TGGTCCCGATTAGATTAATCTGC 58.105 43.478 25.22 14.25 41.80 4.26
2594 3006 3.927142 GGTCCCGATTAGATTAATCTGCG 59.073 47.826 25.22 22.61 41.80 5.18
2689 3101 7.317842 AGATGATCAATTGCACTCTTTGTAG 57.682 36.000 0.00 0.00 0.00 2.74
2706 3118 5.826601 TTGTAGTGTTCACTTTGCAATCA 57.173 34.783 10.74 0.00 0.00 2.57
2721 3133 7.912250 ACTTTGCAATCATGAATAGATCGAAAC 59.088 33.333 0.00 0.00 0.00 2.78
2723 3135 6.057533 TGCAATCATGAATAGATCGAAACCT 58.942 36.000 0.00 0.00 0.00 3.50
2732 3144 6.269077 TGAATAGATCGAAACCTAGGCCAATA 59.731 38.462 9.30 0.00 0.00 1.90
2733 3145 6.875972 ATAGATCGAAACCTAGGCCAATAT 57.124 37.500 9.30 0.00 0.00 1.28
2737 3149 3.964688 TCGAAACCTAGGCCAATATGAGA 59.035 43.478 9.30 0.00 0.00 3.27
2757 3169 2.029073 ACGAGGCAGTGTTGGACG 59.971 61.111 0.00 0.00 0.00 4.79
2759 3171 2.741092 GAGGCAGTGTTGGACGGA 59.259 61.111 0.00 0.00 0.00 4.69
2793 3206 2.360350 CACCTCTGCCGCCATTGT 60.360 61.111 0.00 0.00 0.00 2.71
2795 3208 2.046023 CCTCTGCCGCCATTGTCA 60.046 61.111 0.00 0.00 0.00 3.58
2799 3212 0.608856 TCTGCCGCCATTGTCAACAT 60.609 50.000 0.00 0.00 0.00 2.71
2801 3214 1.226379 GCCGCCATTGTCAACATCG 60.226 57.895 0.00 0.00 0.00 3.84
2827 3240 0.607489 GCAGGTGCAAGGAGTGTCAT 60.607 55.000 0.00 0.00 41.59 3.06
2835 3248 3.264193 TGCAAGGAGTGTCATCTACCATT 59.736 43.478 0.00 0.00 0.00 3.16
2846 3259 4.449068 GTCATCTACCATTGCAACCTATCG 59.551 45.833 0.00 0.00 0.00 2.92
2849 3262 0.392461 ACCATTGCAACCTATCGCGT 60.392 50.000 5.77 0.00 0.00 6.01
2850 3263 0.732571 CCATTGCAACCTATCGCGTT 59.267 50.000 5.77 0.00 0.00 4.84
2882 3295 0.749649 TGCAAACCATCACACCCAAC 59.250 50.000 0.00 0.00 0.00 3.77
2883 3296 1.039856 GCAAACCATCACACCCAACT 58.960 50.000 0.00 0.00 0.00 3.16
2884 3297 2.235016 GCAAACCATCACACCCAACTA 58.765 47.619 0.00 0.00 0.00 2.24
2885 3298 2.625790 GCAAACCATCACACCCAACTAA 59.374 45.455 0.00 0.00 0.00 2.24
2886 3299 3.305335 GCAAACCATCACACCCAACTAAG 60.305 47.826 0.00 0.00 0.00 2.18
2887 3300 2.879103 ACCATCACACCCAACTAAGG 57.121 50.000 0.00 0.00 0.00 2.69
2888 3301 1.271926 ACCATCACACCCAACTAAGGC 60.272 52.381 0.00 0.00 0.00 4.35
2889 3302 1.463674 CATCACACCCAACTAAGGCC 58.536 55.000 0.00 0.00 0.00 5.19
2890 3303 1.004745 CATCACACCCAACTAAGGCCT 59.995 52.381 0.00 0.00 0.00 5.19
2891 3304 1.145571 TCACACCCAACTAAGGCCTT 58.854 50.000 24.18 24.18 0.00 4.35
2892 3305 1.202879 TCACACCCAACTAAGGCCTTG 60.203 52.381 28.77 19.17 0.00 3.61
2893 3306 0.850784 ACACCCAACTAAGGCCTTGT 59.149 50.000 28.77 19.82 0.00 3.16
2894 3307 1.216930 ACACCCAACTAAGGCCTTGTT 59.783 47.619 28.77 23.97 0.00 2.83
2895 3308 1.886542 CACCCAACTAAGGCCTTGTTC 59.113 52.381 28.77 0.00 0.00 3.18
2896 3309 1.165270 CCCAACTAAGGCCTTGTTCG 58.835 55.000 28.77 19.78 0.00 3.95
2897 3310 1.165270 CCAACTAAGGCCTTGTTCGG 58.835 55.000 28.77 23.31 0.00 4.30
2898 3311 1.544759 CCAACTAAGGCCTTGTTCGGT 60.545 52.381 28.77 14.72 0.00 4.69
2899 3312 2.227194 CAACTAAGGCCTTGTTCGGTT 58.773 47.619 28.77 19.10 0.00 4.44
2900 3313 3.404899 CAACTAAGGCCTTGTTCGGTTA 58.595 45.455 28.77 4.02 0.00 2.85
2901 3314 3.049708 ACTAAGGCCTTGTTCGGTTAC 57.950 47.619 28.77 0.00 0.00 2.50
2902 3315 2.369532 ACTAAGGCCTTGTTCGGTTACA 59.630 45.455 28.77 2.40 0.00 2.41
2903 3316 1.601166 AAGGCCTTGTTCGGTTACAC 58.399 50.000 19.73 0.00 0.00 2.90
2904 3317 0.250597 AGGCCTTGTTCGGTTACACC 60.251 55.000 0.00 0.00 34.05 4.16
2905 3318 1.239296 GGCCTTGTTCGGTTACACCC 61.239 60.000 0.00 0.00 33.75 4.61
2906 3319 0.250597 GCCTTGTTCGGTTACACCCT 60.251 55.000 0.00 0.00 33.75 4.34
2907 3320 1.519408 CCTTGTTCGGTTACACCCTG 58.481 55.000 0.00 0.00 33.75 4.45
2908 3321 0.872388 CTTGTTCGGTTACACCCTGC 59.128 55.000 0.00 0.00 33.75 4.85
2909 3322 0.535553 TTGTTCGGTTACACCCTGCC 60.536 55.000 0.00 0.00 33.75 4.85
2910 3323 1.373812 GTTCGGTTACACCCTGCCT 59.626 57.895 0.00 0.00 33.75 4.75
2911 3324 0.953960 GTTCGGTTACACCCTGCCTG 60.954 60.000 0.00 0.00 33.75 4.85
2912 3325 1.122632 TTCGGTTACACCCTGCCTGA 61.123 55.000 0.00 0.00 33.75 3.86
2913 3326 1.122632 TCGGTTACACCCTGCCTGAA 61.123 55.000 0.00 0.00 33.75 3.02
2914 3327 0.673644 CGGTTACACCCTGCCTGAAG 60.674 60.000 0.00 0.00 33.75 3.02
2915 3328 0.322546 GGTTACACCCTGCCTGAAGG 60.323 60.000 0.00 0.00 37.05 3.46
2921 3334 4.672251 CCTGCCTGAAGGGGATTG 57.328 61.111 0.00 0.00 34.07 2.67
2922 3335 1.076485 CCTGCCTGAAGGGGATTGG 60.076 63.158 0.00 0.00 34.07 3.16
2923 3336 1.574526 CCTGCCTGAAGGGGATTGGA 61.575 60.000 0.00 0.00 34.07 3.53
2924 3337 0.106819 CTGCCTGAAGGGGATTGGAG 60.107 60.000 0.00 0.00 34.07 3.86
2925 3338 1.228510 GCCTGAAGGGGATTGGAGG 59.771 63.158 0.00 0.00 35.18 4.30
2926 3339 1.925888 CCTGAAGGGGATTGGAGGG 59.074 63.158 0.00 0.00 0.00 4.30
2927 3340 1.649271 CCTGAAGGGGATTGGAGGGG 61.649 65.000 0.00 0.00 0.00 4.79
2928 3341 0.624500 CTGAAGGGGATTGGAGGGGA 60.625 60.000 0.00 0.00 0.00 4.81
2929 3342 0.047802 TGAAGGGGATTGGAGGGGAT 59.952 55.000 0.00 0.00 0.00 3.85
2930 3343 1.235756 GAAGGGGATTGGAGGGGATT 58.764 55.000 0.00 0.00 0.00 3.01
2931 3344 1.575788 GAAGGGGATTGGAGGGGATTT 59.424 52.381 0.00 0.00 0.00 2.17
2932 3345 0.936691 AGGGGATTGGAGGGGATTTG 59.063 55.000 0.00 0.00 0.00 2.32
2933 3346 0.105504 GGGGATTGGAGGGGATTTGG 60.106 60.000 0.00 0.00 0.00 3.28
2934 3347 0.105504 GGGATTGGAGGGGATTTGGG 60.106 60.000 0.00 0.00 0.00 4.12
2935 3348 0.760567 GGATTGGAGGGGATTTGGGC 60.761 60.000 0.00 0.00 0.00 5.36
2936 3349 1.076044 ATTGGAGGGGATTTGGGCG 60.076 57.895 0.00 0.00 0.00 6.13
2937 3350 2.588029 ATTGGAGGGGATTTGGGCGG 62.588 60.000 0.00 0.00 0.00 6.13
2938 3351 4.522975 GGAGGGGATTTGGGCGGG 62.523 72.222 0.00 0.00 0.00 6.13
2939 3352 3.416880 GAGGGGATTTGGGCGGGA 61.417 66.667 0.00 0.00 0.00 5.14
2940 3353 2.699938 AGGGGATTTGGGCGGGAT 60.700 61.111 0.00 0.00 0.00 3.85
2941 3354 2.282106 GGGGATTTGGGCGGGATT 59.718 61.111 0.00 0.00 0.00 3.01
2942 3355 1.382557 GGGGATTTGGGCGGGATTT 60.383 57.895 0.00 0.00 0.00 2.17
2943 3356 1.685355 GGGGATTTGGGCGGGATTTG 61.685 60.000 0.00 0.00 0.00 2.32
2944 3357 0.686112 GGGATTTGGGCGGGATTTGA 60.686 55.000 0.00 0.00 0.00 2.69
2945 3358 0.459899 GGATTTGGGCGGGATTTGAC 59.540 55.000 0.00 0.00 0.00 3.18
2946 3359 1.474330 GATTTGGGCGGGATTTGACT 58.526 50.000 0.00 0.00 0.00 3.41
2947 3360 1.824852 GATTTGGGCGGGATTTGACTT 59.175 47.619 0.00 0.00 0.00 3.01
2948 3361 2.588464 TTTGGGCGGGATTTGACTTA 57.412 45.000 0.00 0.00 0.00 2.24
2949 3362 1.828979 TTGGGCGGGATTTGACTTAC 58.171 50.000 0.00 0.00 0.00 2.34
2950 3363 0.693622 TGGGCGGGATTTGACTTACA 59.306 50.000 0.00 0.00 0.00 2.41
2951 3364 1.339631 TGGGCGGGATTTGACTTACAG 60.340 52.381 0.00 0.00 0.00 2.74
2952 3365 1.379527 GGCGGGATTTGACTTACAGG 58.620 55.000 0.00 0.00 0.00 4.00
2953 3366 1.379527 GCGGGATTTGACTTACAGGG 58.620 55.000 0.00 0.00 0.00 4.45
2954 3367 2.017113 GCGGGATTTGACTTACAGGGG 61.017 57.143 0.00 0.00 0.00 4.79
2955 3368 1.557832 CGGGATTTGACTTACAGGGGA 59.442 52.381 0.00 0.00 0.00 4.81
2956 3369 2.172717 CGGGATTTGACTTACAGGGGAT 59.827 50.000 0.00 0.00 0.00 3.85
2957 3370 3.371595 CGGGATTTGACTTACAGGGGATT 60.372 47.826 0.00 0.00 0.00 3.01
2958 3371 4.207955 GGGATTTGACTTACAGGGGATTC 58.792 47.826 0.00 0.00 0.00 2.52
2959 3372 4.325030 GGGATTTGACTTACAGGGGATTCA 60.325 45.833 0.00 0.00 0.00 2.57
2960 3373 5.261216 GGATTTGACTTACAGGGGATTCAA 58.739 41.667 0.00 0.00 0.00 2.69
2961 3374 5.893824 GGATTTGACTTACAGGGGATTCAAT 59.106 40.000 0.00 0.00 0.00 2.57
2962 3375 6.039829 GGATTTGACTTACAGGGGATTCAATC 59.960 42.308 0.00 0.00 0.00 2.67
2976 3389 5.511234 GATTCAATCCACTTCAATCCCTG 57.489 43.478 0.00 0.00 0.00 4.45
2977 3390 4.387026 TTCAATCCACTTCAATCCCTGT 57.613 40.909 0.00 0.00 0.00 4.00
2978 3391 3.955471 TCAATCCACTTCAATCCCTGTC 58.045 45.455 0.00 0.00 0.00 3.51
2979 3392 3.330405 TCAATCCACTTCAATCCCTGTCA 59.670 43.478 0.00 0.00 0.00 3.58
2980 3393 4.081406 CAATCCACTTCAATCCCTGTCAA 58.919 43.478 0.00 0.00 0.00 3.18
2981 3394 3.874383 TCCACTTCAATCCCTGTCAAA 57.126 42.857 0.00 0.00 0.00 2.69
2982 3395 3.486383 TCCACTTCAATCCCTGTCAAAC 58.514 45.455 0.00 0.00 0.00 2.93
2983 3396 2.558359 CCACTTCAATCCCTGTCAAACC 59.442 50.000 0.00 0.00 0.00 3.27
2984 3397 2.558359 CACTTCAATCCCTGTCAAACCC 59.442 50.000 0.00 0.00 0.00 4.11
2985 3398 2.171003 CTTCAATCCCTGTCAAACCCC 58.829 52.381 0.00 0.00 0.00 4.95
2986 3399 1.455822 TCAATCCCTGTCAAACCCCT 58.544 50.000 0.00 0.00 0.00 4.79
2987 3400 1.786441 TCAATCCCTGTCAAACCCCTT 59.214 47.619 0.00 0.00 0.00 3.95
2988 3401 2.178984 TCAATCCCTGTCAAACCCCTTT 59.821 45.455 0.00 0.00 0.00 3.11
2989 3402 2.562738 CAATCCCTGTCAAACCCCTTTC 59.437 50.000 0.00 0.00 0.00 2.62
2990 3403 1.227249 TCCCTGTCAAACCCCTTTCA 58.773 50.000 0.00 0.00 0.00 2.69
2991 3404 1.571457 TCCCTGTCAAACCCCTTTCAA 59.429 47.619 0.00 0.00 0.00 2.69
2992 3405 2.178984 TCCCTGTCAAACCCCTTTCAAT 59.821 45.455 0.00 0.00 0.00 2.57
2993 3406 2.972021 CCCTGTCAAACCCCTTTCAATT 59.028 45.455 0.00 0.00 0.00 2.32
2994 3407 3.006859 CCCTGTCAAACCCCTTTCAATTC 59.993 47.826 0.00 0.00 0.00 2.17
2995 3408 3.006859 CCTGTCAAACCCCTTTCAATTCC 59.993 47.826 0.00 0.00 0.00 3.01
2996 3409 2.969262 TGTCAAACCCCTTTCAATTCCC 59.031 45.455 0.00 0.00 0.00 3.97
2997 3410 3.239449 GTCAAACCCCTTTCAATTCCCT 58.761 45.455 0.00 0.00 0.00 4.20
2998 3411 3.006859 GTCAAACCCCTTTCAATTCCCTG 59.993 47.826 0.00 0.00 0.00 4.45
2999 3412 2.972021 CAAACCCCTTTCAATTCCCTGT 59.028 45.455 0.00 0.00 0.00 4.00
3000 3413 2.604912 ACCCCTTTCAATTCCCTGTC 57.395 50.000 0.00 0.00 0.00 3.51
3001 3414 1.786441 ACCCCTTTCAATTCCCTGTCA 59.214 47.619 0.00 0.00 0.00 3.58
3002 3415 2.178984 ACCCCTTTCAATTCCCTGTCAA 59.821 45.455 0.00 0.00 0.00 3.18
3003 3416 2.562738 CCCCTTTCAATTCCCTGTCAAC 59.437 50.000 0.00 0.00 0.00 3.18
3004 3417 2.562738 CCCTTTCAATTCCCTGTCAACC 59.437 50.000 0.00 0.00 0.00 3.77
3005 3418 2.228822 CCTTTCAATTCCCTGTCAACCG 59.771 50.000 0.00 0.00 0.00 4.44
3006 3419 2.940994 TTCAATTCCCTGTCAACCGA 57.059 45.000 0.00 0.00 0.00 4.69
3007 3420 2.940994 TCAATTCCCTGTCAACCGAA 57.059 45.000 0.00 0.00 0.00 4.30
3008 3421 2.500229 TCAATTCCCTGTCAACCGAAC 58.500 47.619 0.00 0.00 0.00 3.95
3009 3422 2.158740 TCAATTCCCTGTCAACCGAACA 60.159 45.455 0.00 0.00 0.00 3.18
3010 3423 1.892209 ATTCCCTGTCAACCGAACAC 58.108 50.000 0.00 0.00 0.00 3.32
3011 3424 0.542333 TTCCCTGTCAACCGAACACA 59.458 50.000 0.00 0.00 0.00 3.72
3012 3425 0.105964 TCCCTGTCAACCGAACACAG 59.894 55.000 0.00 0.00 37.81 3.66
3013 3426 1.507141 CCCTGTCAACCGAACACAGC 61.507 60.000 0.00 0.00 36.91 4.40
3032 3445 1.964344 GCCTAATTGGGATTGGCACCA 60.964 52.381 12.81 0.00 38.36 4.17
3054 3467 3.873361 AGTGCGTGGATCAAATGATGTAG 59.127 43.478 0.00 0.00 34.37 2.74
3106 3520 2.650813 CTAGGCGTGGTGGATGGAGC 62.651 65.000 0.00 0.00 0.00 4.70
3164 3578 4.821589 GGAGCAACGAGAGGGGCG 62.822 72.222 0.00 0.00 38.94 6.13
3193 3607 3.242248 CGTACTCGATCGATTGGGTTTTC 59.758 47.826 23.13 12.77 39.71 2.29
3198 3612 2.420022 CGATCGATTGGGTTTTCTGCTT 59.580 45.455 10.26 0.00 0.00 3.91
3248 3662 3.199727 GGGGCTCTCATTTCTCTTCTCTT 59.800 47.826 0.00 0.00 0.00 2.85
3276 3692 8.561536 TCTCTCTCTTCTATCCTCTTTAGAGA 57.438 38.462 8.32 0.00 44.74 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 45 7.362229 GGGAACACAAAATATCACCAACGATAA 60.362 37.037 0.00 0.00 31.80 1.75
46 50 5.461032 TGGGAACACAAAATATCACCAAC 57.539 39.130 0.00 0.00 33.40 3.77
117 123 0.617820 AGGCACCGAGACCAAGGTAT 60.618 55.000 0.00 0.00 39.00 2.73
118 124 0.834687 AAGGCACCGAGACCAAGGTA 60.835 55.000 0.00 0.00 39.00 3.08
181 187 4.535781 AGCAAGATATATGGCAAACACCA 58.464 39.130 0.00 0.00 45.82 4.17
182 188 6.127897 GGATAGCAAGATATATGGCAAACACC 60.128 42.308 0.00 0.00 0.00 4.16
183 189 6.430925 TGGATAGCAAGATATATGGCAAACAC 59.569 38.462 0.00 0.00 0.00 3.32
186 192 6.782986 AGTGGATAGCAAGATATATGGCAAA 58.217 36.000 0.00 0.00 0.00 3.68
192 200 6.097554 CGAAGGGAGTGGATAGCAAGATATAT 59.902 42.308 0.00 0.00 0.00 0.86
205 213 0.337082 TATGGGACGAAGGGAGTGGA 59.663 55.000 0.00 0.00 0.00 4.02
207 215 2.170607 ACATTATGGGACGAAGGGAGTG 59.829 50.000 0.00 0.00 0.00 3.51
211 262 4.101119 AGTCTTACATTATGGGACGAAGGG 59.899 45.833 0.00 0.00 32.86 3.95
238 289 3.376859 CCGCCTCATAATGCAGTGTTAAA 59.623 43.478 0.00 0.00 0.00 1.52
241 292 1.065491 TCCGCCTCATAATGCAGTGTT 60.065 47.619 0.00 0.00 0.00 3.32
243 294 1.224075 CTCCGCCTCATAATGCAGTG 58.776 55.000 0.00 0.00 0.00 3.66
244 295 0.107456 CCTCCGCCTCATAATGCAGT 59.893 55.000 0.00 0.00 0.00 4.40
245 296 0.604780 CCCTCCGCCTCATAATGCAG 60.605 60.000 0.00 0.00 0.00 4.41
246 297 1.053835 TCCCTCCGCCTCATAATGCA 61.054 55.000 0.00 0.00 0.00 3.96
247 298 0.321122 CTCCCTCCGCCTCATAATGC 60.321 60.000 0.00 0.00 0.00 3.56
248 299 1.051812 ACTCCCTCCGCCTCATAATG 58.948 55.000 0.00 0.00 0.00 1.90
249 300 2.158295 AGTACTCCCTCCGCCTCATAAT 60.158 50.000 0.00 0.00 0.00 1.28
251 302 0.851469 AGTACTCCCTCCGCCTCATA 59.149 55.000 0.00 0.00 0.00 2.15
252 303 0.851469 TAGTACTCCCTCCGCCTCAT 59.149 55.000 0.00 0.00 0.00 2.90
253 304 0.183014 CTAGTACTCCCTCCGCCTCA 59.817 60.000 0.00 0.00 0.00 3.86
254 305 0.183252 ACTAGTACTCCCTCCGCCTC 59.817 60.000 0.00 0.00 0.00 4.70
255 306 0.630134 AACTAGTACTCCCTCCGCCT 59.370 55.000 0.00 0.00 0.00 5.52
256 307 0.745468 CAACTAGTACTCCCTCCGCC 59.255 60.000 0.00 0.00 0.00 6.13
257 308 0.102663 GCAACTAGTACTCCCTCCGC 59.897 60.000 0.00 0.00 0.00 5.54
258 309 1.765230 AGCAACTAGTACTCCCTCCG 58.235 55.000 0.00 0.00 0.00 4.63
272 323 3.004734 ACACCATAGTTGAGCAAAGCAAC 59.995 43.478 0.00 0.00 44.46 4.17
274 325 2.813754 GACACCATAGTTGAGCAAAGCA 59.186 45.455 0.00 0.00 0.00 3.91
275 326 3.077359 AGACACCATAGTTGAGCAAAGC 58.923 45.455 0.00 0.00 0.00 3.51
276 327 3.686726 GGAGACACCATAGTTGAGCAAAG 59.313 47.826 0.00 0.00 38.79 2.77
277 328 3.327757 AGGAGACACCATAGTTGAGCAAA 59.672 43.478 0.00 0.00 42.04 3.68
278 329 2.906389 AGGAGACACCATAGTTGAGCAA 59.094 45.455 0.00 0.00 42.04 3.91
279 330 2.497675 GAGGAGACACCATAGTTGAGCA 59.502 50.000 0.00 0.00 42.04 4.26
280 331 2.763448 AGAGGAGACACCATAGTTGAGC 59.237 50.000 0.00 0.00 42.04 4.26
281 332 3.766591 ACAGAGGAGACACCATAGTTGAG 59.233 47.826 0.00 0.00 42.04 3.02
282 333 3.779444 ACAGAGGAGACACCATAGTTGA 58.221 45.455 0.00 0.00 42.04 3.18
283 334 4.543590 AACAGAGGAGACACCATAGTTG 57.456 45.455 0.00 0.00 42.04 3.16
284 335 4.348168 ACAAACAGAGGAGACACCATAGTT 59.652 41.667 0.00 0.00 42.04 2.24
285 336 3.904339 ACAAACAGAGGAGACACCATAGT 59.096 43.478 0.00 0.00 42.04 2.12
286 337 4.543590 ACAAACAGAGGAGACACCATAG 57.456 45.455 0.00 0.00 42.04 2.23
287 338 7.914427 ATATACAAACAGAGGAGACACCATA 57.086 36.000 0.00 0.00 42.04 2.74
288 339 6.814954 ATATACAAACAGAGGAGACACCAT 57.185 37.500 0.00 0.00 42.04 3.55
289 340 6.620877 AATATACAAACAGAGGAGACACCA 57.379 37.500 0.00 0.00 42.04 4.17
290 341 7.606456 TCAAAATATACAAACAGAGGAGACACC 59.394 37.037 0.00 0.00 39.35 4.16
291 342 8.547967 TCAAAATATACAAACAGAGGAGACAC 57.452 34.615 0.00 0.00 0.00 3.67
292 343 7.334421 GCTCAAAATATACAAACAGAGGAGACA 59.666 37.037 0.00 0.00 0.00 3.41
293 344 7.334421 TGCTCAAAATATACAAACAGAGGAGAC 59.666 37.037 0.00 0.00 0.00 3.36
294 345 7.394016 TGCTCAAAATATACAAACAGAGGAGA 58.606 34.615 0.00 0.00 0.00 3.71
295 346 7.615582 TGCTCAAAATATACAAACAGAGGAG 57.384 36.000 0.00 0.00 0.00 3.69
296 347 7.994425 TTGCTCAAAATATACAAACAGAGGA 57.006 32.000 0.00 0.00 0.00 3.71
313 364 8.859090 CCAAGGTTATGGATAAATATTGCTCAA 58.141 33.333 0.00 0.00 43.54 3.02
314 365 8.224025 TCCAAGGTTATGGATAAATATTGCTCA 58.776 33.333 0.00 0.00 44.52 4.26
315 366 8.635765 TCCAAGGTTATGGATAAATATTGCTC 57.364 34.615 0.00 0.00 44.52 4.26
328 379 7.610865 TCTTTTTAGCAAATCCAAGGTTATGG 58.389 34.615 0.00 0.00 42.12 2.74
369 420 5.872963 TGGCTGCAGAGATGATAATATGTT 58.127 37.500 20.43 0.00 0.00 2.71
370 452 5.494390 TGGCTGCAGAGATGATAATATGT 57.506 39.130 20.43 0.00 0.00 2.29
377 459 0.251354 ACGTTGGCTGCAGAGATGAT 59.749 50.000 20.43 0.00 0.00 2.45
378 460 0.390340 GACGTTGGCTGCAGAGATGA 60.390 55.000 20.43 0.00 0.00 2.92
380 462 0.322975 AAGACGTTGGCTGCAGAGAT 59.677 50.000 20.43 0.00 0.00 2.75
381 463 0.106708 AAAGACGTTGGCTGCAGAGA 59.893 50.000 20.43 0.00 0.00 3.10
382 464 0.236711 CAAAGACGTTGGCTGCAGAG 59.763 55.000 20.43 4.97 33.18 3.35
383 465 0.179059 TCAAAGACGTTGGCTGCAGA 60.179 50.000 20.43 0.00 37.85 4.26
386 468 0.179215 CGATCAAAGACGTTGGCTGC 60.179 55.000 1.16 0.00 37.85 5.25
387 469 1.136252 CACGATCAAAGACGTTGGCTG 60.136 52.381 1.16 0.00 40.76 4.85
388 470 1.148310 CACGATCAAAGACGTTGGCT 58.852 50.000 1.16 0.00 40.76 4.75
390 472 0.865111 TGCACGATCAAAGACGTTGG 59.135 50.000 1.16 0.00 40.76 3.77
391 473 1.792367 TCTGCACGATCAAAGACGTTG 59.208 47.619 0.00 0.00 40.76 4.10
392 474 2.148916 TCTGCACGATCAAAGACGTT 57.851 45.000 0.00 0.00 40.76 3.99
394 476 2.535984 GGTATCTGCACGATCAAAGACG 59.464 50.000 0.00 0.00 33.48 4.18
395 477 2.866762 GGGTATCTGCACGATCAAAGAC 59.133 50.000 0.00 0.00 33.48 3.01
405 487 0.318762 GAGATCGGGGGTATCTGCAC 59.681 60.000 0.00 0.00 33.82 4.57
408 490 2.320781 ACAAGAGATCGGGGGTATCTG 58.679 52.381 0.00 0.00 33.82 2.90
418 500 1.391485 CGTGGAAGCAACAAGAGATCG 59.609 52.381 0.00 0.00 0.00 3.69
467 590 9.382244 CAACGAGGAGTAAAAACTTAAAAGATG 57.618 33.333 0.00 0.00 0.00 2.90
473 596 7.687445 GTTGTCAACGAGGAGTAAAAACTTAA 58.313 34.615 0.00 0.00 0.00 1.85
474 597 7.237920 GTTGTCAACGAGGAGTAAAAACTTA 57.762 36.000 0.00 0.00 0.00 2.24
505 628 0.038021 CATGTGTCCATGGGGTGTGA 59.962 55.000 13.02 0.00 43.95 3.58
518 643 3.507162 TCACCCTTTGATGTCATGTGT 57.493 42.857 0.00 0.00 0.00 3.72
519 644 3.365264 CGTTCACCCTTTGATGTCATGTG 60.365 47.826 0.00 0.00 32.84 3.21
523 648 1.418264 TCCGTTCACCCTTTGATGTCA 59.582 47.619 0.00 0.00 32.84 3.58
534 659 6.161381 TCTATACTTGTTCTTTCCGTTCACC 58.839 40.000 0.00 0.00 0.00 4.02
542 667 7.565680 TCCTCCCATTCTATACTTGTTCTTTC 58.434 38.462 0.00 0.00 0.00 2.62
583 708 1.419762 TGTGCCATGACTACACCTGTT 59.580 47.619 0.00 0.00 33.30 3.16
611 740 6.405278 TTCCTCTCCCAATTTTGTTCTTTC 57.595 37.500 0.00 0.00 0.00 2.62
656 1004 1.079750 GGAAGCTTCGAGCCTTCGT 60.080 57.895 19.91 0.00 46.72 3.85
688 1038 5.716703 AGCTTGTAGAGGGCAAATTTATTGT 59.283 36.000 0.00 0.00 0.00 2.71
689 1039 6.212888 AGCTTGTAGAGGGCAAATTTATTG 57.787 37.500 0.00 0.00 0.00 1.90
710 1068 7.385478 AGAAAGTCTTGCAAACTTAGTACTAGC 59.615 37.037 20.08 3.56 35.96 3.42
711 1069 8.819643 AGAAAGTCTTGCAAACTTAGTACTAG 57.180 34.615 20.08 0.74 35.96 2.57
712 1070 9.257651 GAAGAAAGTCTTGCAAACTTAGTACTA 57.742 33.333 20.08 0.00 36.73 1.82
713 1071 7.226918 GGAAGAAAGTCTTGCAAACTTAGTACT 59.773 37.037 20.08 0.00 43.23 2.73
714 1072 7.353497 GGAAGAAAGTCTTGCAAACTTAGTAC 58.647 38.462 20.08 14.27 43.23 2.73
715 1073 6.485648 GGGAAGAAAGTCTTGCAAACTTAGTA 59.514 38.462 20.08 0.00 45.18 1.82
716 1074 5.299531 GGGAAGAAAGTCTTGCAAACTTAGT 59.700 40.000 20.08 10.79 45.18 2.24
717 1075 5.560953 CGGGAAGAAAGTCTTGCAAACTTAG 60.561 44.000 20.08 2.33 45.18 2.18
718 1076 4.274950 CGGGAAGAAAGTCTTGCAAACTTA 59.725 41.667 20.08 0.00 45.18 2.24
719 1077 3.066760 CGGGAAGAAAGTCTTGCAAACTT 59.933 43.478 16.38 16.38 45.18 2.66
721 1079 2.357952 ACGGGAAGAAAGTCTTGCAAAC 59.642 45.455 11.00 2.11 45.18 2.93
777 1143 7.214381 TCGGTGGATAGTGTGATTAATTTAGG 58.786 38.462 0.00 0.00 0.00 2.69
788 1154 7.148323 TGTGATTAAATTTCGGTGGATAGTGTG 60.148 37.037 0.00 0.00 0.00 3.82
838 1206 7.277098 ACTGATAATGAGCAAAATTGATGCAAC 59.723 33.333 16.25 11.02 46.22 4.17
897 1271 9.323985 TGCAATTTTGACCCTTTATTATAATGC 57.676 29.630 8.28 0.00 0.00 3.56
910 1284 3.195396 TGGCTATCTTGCAATTTTGACCC 59.805 43.478 0.00 0.00 34.04 4.46
911 1285 4.176271 GTGGCTATCTTGCAATTTTGACC 58.824 43.478 0.00 0.00 34.04 4.02
946 1320 7.874940 TCATTGTTTGTCTGGTTTATTCTCAG 58.125 34.615 0.00 0.00 0.00 3.35
947 1321 7.815840 TCATTGTTTGTCTGGTTTATTCTCA 57.184 32.000 0.00 0.00 0.00 3.27
948 1322 8.299570 ACATCATTGTTTGTCTGGTTTATTCTC 58.700 33.333 0.00 0.00 29.55 2.87
949 1323 8.181904 ACATCATTGTTTGTCTGGTTTATTCT 57.818 30.769 0.00 0.00 29.55 2.40
950 1324 8.081633 TGACATCATTGTTTGTCTGGTTTATTC 58.918 33.333 17.27 0.00 42.17 1.75
968 1354 1.746615 GCAGGTGCCGTGACATCAT 60.747 57.895 0.00 0.00 34.31 2.45
972 1358 1.528076 AATTGCAGGTGCCGTGACA 60.528 52.632 0.00 0.00 41.18 3.58
978 1364 1.153509 GCCATCAATTGCAGGTGCC 60.154 57.895 14.81 0.00 41.18 5.01
987 1373 5.601583 TGTTTATCATGCAGCCATCAATT 57.398 34.783 0.00 0.00 0.00 2.32
994 1380 4.156556 TCTGACTTTGTTTATCATGCAGCC 59.843 41.667 0.00 0.00 0.00 4.85
995 1381 5.300969 TCTGACTTTGTTTATCATGCAGC 57.699 39.130 0.00 0.00 0.00 5.25
1031 1417 4.954970 ACTTGTGGGCTGCCGTGG 62.955 66.667 13.40 3.58 0.00 4.94
1032 1418 2.489275 AAACTTGTGGGCTGCCGTG 61.489 57.895 13.40 3.21 0.00 4.94
1033 1419 2.123897 AAACTTGTGGGCTGCCGT 60.124 55.556 13.40 0.94 0.00 5.68
1035 1421 2.029518 GCAAACTTGTGGGCTGCC 59.970 61.111 11.05 11.05 0.00 4.85
1088 1477 1.453745 GCCATGGCCGATTCCTTGA 60.454 57.895 27.24 0.00 34.28 3.02
1636 2028 4.996434 GCTGCTGCCGTGTGGAGT 62.996 66.667 3.85 0.00 37.49 3.85
1678 2070 1.455032 TCGCCGGAGCTGGATAAGA 60.455 57.895 5.05 0.00 36.60 2.10
1731 2123 2.355716 CGGTAATGGAGATGGTGGTTGT 60.356 50.000 0.00 0.00 0.00 3.32
1733 2125 1.408266 GCGGTAATGGAGATGGTGGTT 60.408 52.381 0.00 0.00 0.00 3.67
1757 2149 1.859080 GCGACGGATACAATGAAGACC 59.141 52.381 0.00 0.00 0.00 3.85
1765 2157 1.085893 TCGTGTAGCGACGGATACAA 58.914 50.000 0.00 0.00 45.68 2.41
1822 2214 2.030562 CGGAAACAGTGAGCCCGT 59.969 61.111 0.00 0.00 35.83 5.28
1839 2231 3.242804 TGTTTGGTCCGAAATTTGACGAC 60.243 43.478 0.00 0.00 32.19 4.34
1845 2237 4.142038 AGCTACTGTTTGGTCCGAAATTT 58.858 39.130 0.00 0.00 0.00 1.82
1973 2368 2.171840 GAGGAGGATAATAGCTCGGCA 58.828 52.381 0.00 0.00 0.00 5.69
2088 2483 0.892063 GAAACTCTGAGCCGGACTCT 59.108 55.000 21.36 3.77 46.41 3.24
2112 2507 3.185188 CACGATCAACTGACCTTGACAAG 59.815 47.826 8.31 8.31 32.95 3.16
2121 2516 0.164647 GCAGTGCACGATCAACTGAC 59.835 55.000 11.09 6.38 0.00 3.51
2154 2549 0.964860 TGCCGGGGTCATGAAACATG 60.965 55.000 2.18 5.51 0.00 3.21
2163 2558 2.925706 TAAGTGCTGCCGGGGTCA 60.926 61.111 2.18 0.00 0.00 4.02
2194 2589 2.123428 GGTAGTAAGAGCCGGCGGA 61.123 63.158 33.44 4.75 0.00 5.54
2313 2708 4.589908 CATTCCAAAGCCTACCAAGTACT 58.410 43.478 0.00 0.00 0.00 2.73
2383 2786 9.204570 GATTACAAAGTCATTGCGGTATATACT 57.795 33.333 12.54 0.00 43.13 2.12
2384 2787 8.160342 CGATTACAAAGTCATTGCGGTATATAC 58.840 37.037 4.14 4.14 43.13 1.47
2385 2788 7.148705 GCGATTACAAAGTCATTGCGGTATATA 60.149 37.037 0.00 0.00 43.13 0.86
2386 2789 6.347402 GCGATTACAAAGTCATTGCGGTATAT 60.347 38.462 0.00 0.00 43.13 0.86
2387 2790 5.050634 GCGATTACAAAGTCATTGCGGTATA 60.051 40.000 0.00 0.00 43.13 1.47
2388 2791 4.260620 GCGATTACAAAGTCATTGCGGTAT 60.261 41.667 0.00 0.00 43.13 2.73
2389 2792 3.062909 GCGATTACAAAGTCATTGCGGTA 59.937 43.478 0.00 0.00 43.13 4.02
2390 2793 2.159572 GCGATTACAAAGTCATTGCGGT 60.160 45.455 0.00 0.00 43.13 5.68
2391 2794 2.159585 TGCGATTACAAAGTCATTGCGG 60.160 45.455 0.00 0.00 43.13 5.69
2430 2842 8.865001 TGAATAAACATAAACCAAATTAAGCGC 58.135 29.630 0.00 0.00 0.00 5.92
2495 2907 9.103048 CACTACAAAAGTTTTAATAGCAGAACG 57.897 33.333 14.47 0.00 35.76 3.95
2546 2958 4.119136 CGAGTTTGGCCAATGAAAACTTT 58.881 39.130 21.26 0.00 42.60 2.66
2578 2990 7.408132 TTGTACTGCGCAGATTAATCTAATC 57.592 36.000 42.03 12.52 43.77 1.75
2593 3005 8.946935 CATTTGTGTTGATATTATTGTACTGCG 58.053 33.333 0.00 0.00 0.00 5.18
2594 3006 9.236691 CCATTTGTGTTGATATTATTGTACTGC 57.763 33.333 0.00 0.00 0.00 4.40
2660 3072 9.661187 CAAAGAGTGCAATTGATCATCTATTAC 57.339 33.333 10.34 0.00 0.00 1.89
2667 3079 6.849502 CACTACAAAGAGTGCAATTGATCAT 58.150 36.000 10.34 0.00 40.42 2.45
2689 3101 7.307694 TCTATTCATGATTGCAAAGTGAACAC 58.692 34.615 19.95 0.00 31.55 3.32
2699 3111 6.057533 AGGTTTCGATCTATTCATGATTGCA 58.942 36.000 0.00 0.00 0.00 4.08
2706 3118 4.593206 TGGCCTAGGTTTCGATCTATTCAT 59.407 41.667 11.31 0.00 0.00 2.57
2721 3133 3.069586 TCGTGTTCTCATATTGGCCTAGG 59.930 47.826 3.67 3.67 0.00 3.02
2723 3135 3.069586 CCTCGTGTTCTCATATTGGCCTA 59.930 47.826 3.32 0.00 0.00 3.93
2732 3144 0.681733 ACACTGCCTCGTGTTCTCAT 59.318 50.000 0.00 0.00 45.27 2.90
2733 3145 2.124293 ACACTGCCTCGTGTTCTCA 58.876 52.632 0.00 0.00 45.27 3.27
2793 3206 1.202639 ACCTGCACTTGTCGATGTTGA 60.203 47.619 0.00 0.00 0.00 3.18
2795 3208 1.229428 CACCTGCACTTGTCGATGTT 58.771 50.000 0.00 0.00 0.00 2.71
2827 3240 2.801699 CGCGATAGGTTGCAATGGTAGA 60.802 50.000 0.00 0.00 34.16 2.59
2835 3248 1.348538 CGACAACGCGATAGGTTGCA 61.349 55.000 15.93 0.00 45.22 4.08
2846 3259 1.275657 CAACACCAGACGACAACGC 59.724 57.895 0.00 0.00 43.96 4.84
2849 3262 1.131504 GTTTGCAACACCAGACGACAA 59.868 47.619 0.00 0.00 0.00 3.18
2850 3263 0.730265 GTTTGCAACACCAGACGACA 59.270 50.000 0.00 0.00 0.00 4.35
2877 3290 1.165270 CGAACAAGGCCTTAGTTGGG 58.835 55.000 27.33 18.56 0.00 4.12
2882 3295 2.740447 GTGTAACCGAACAAGGCCTTAG 59.260 50.000 20.00 15.05 33.69 2.18
2883 3296 2.769893 GTGTAACCGAACAAGGCCTTA 58.230 47.619 20.00 0.00 33.69 2.69
2884 3297 1.601166 GTGTAACCGAACAAGGCCTT 58.399 50.000 13.78 13.78 33.69 4.35
2885 3298 3.317449 GTGTAACCGAACAAGGCCT 57.683 52.632 0.00 0.00 33.69 5.19
2897 3310 3.249687 CCTTCAGGCAGGGTGTAAC 57.750 57.895 0.00 0.00 0.00 2.50
2904 3317 1.076485 CCAATCCCCTTCAGGCAGG 60.076 63.158 0.00 0.00 0.00 4.85
2905 3318 0.106819 CTCCAATCCCCTTCAGGCAG 60.107 60.000 0.00 0.00 0.00 4.85
2906 3319 1.574526 CCTCCAATCCCCTTCAGGCA 61.575 60.000 0.00 0.00 0.00 4.75
2907 3320 1.228510 CCTCCAATCCCCTTCAGGC 59.771 63.158 0.00 0.00 0.00 4.85
2908 3321 1.649271 CCCCTCCAATCCCCTTCAGG 61.649 65.000 0.00 0.00 0.00 3.86
2909 3322 0.624500 TCCCCTCCAATCCCCTTCAG 60.625 60.000 0.00 0.00 0.00 3.02
2910 3323 0.047802 ATCCCCTCCAATCCCCTTCA 59.952 55.000 0.00 0.00 0.00 3.02
2911 3324 1.235756 AATCCCCTCCAATCCCCTTC 58.764 55.000 0.00 0.00 0.00 3.46
2912 3325 1.291939 CAAATCCCCTCCAATCCCCTT 59.708 52.381 0.00 0.00 0.00 3.95
2913 3326 0.936691 CAAATCCCCTCCAATCCCCT 59.063 55.000 0.00 0.00 0.00 4.79
2914 3327 0.105504 CCAAATCCCCTCCAATCCCC 60.106 60.000 0.00 0.00 0.00 4.81
2915 3328 0.105504 CCCAAATCCCCTCCAATCCC 60.106 60.000 0.00 0.00 0.00 3.85
2916 3329 0.760567 GCCCAAATCCCCTCCAATCC 60.761 60.000 0.00 0.00 0.00 3.01
2917 3330 1.109323 CGCCCAAATCCCCTCCAATC 61.109 60.000 0.00 0.00 0.00 2.67
2918 3331 1.076044 CGCCCAAATCCCCTCCAAT 60.076 57.895 0.00 0.00 0.00 3.16
2919 3332 2.358619 CGCCCAAATCCCCTCCAA 59.641 61.111 0.00 0.00 0.00 3.53
2920 3333 3.738481 CCGCCCAAATCCCCTCCA 61.738 66.667 0.00 0.00 0.00 3.86
2921 3334 4.522975 CCCGCCCAAATCCCCTCC 62.523 72.222 0.00 0.00 0.00 4.30
2922 3335 2.298335 AATCCCGCCCAAATCCCCTC 62.298 60.000 0.00 0.00 0.00 4.30
2923 3336 1.885593 AAATCCCGCCCAAATCCCCT 61.886 55.000 0.00 0.00 0.00 4.79
2924 3337 1.382557 AAATCCCGCCCAAATCCCC 60.383 57.895 0.00 0.00 0.00 4.81
2925 3338 0.686112 TCAAATCCCGCCCAAATCCC 60.686 55.000 0.00 0.00 0.00 3.85
2926 3339 0.459899 GTCAAATCCCGCCCAAATCC 59.540 55.000 0.00 0.00 0.00 3.01
2927 3340 1.474330 AGTCAAATCCCGCCCAAATC 58.526 50.000 0.00 0.00 0.00 2.17
2928 3341 1.937191 AAGTCAAATCCCGCCCAAAT 58.063 45.000 0.00 0.00 0.00 2.32
2929 3342 2.164338 GTAAGTCAAATCCCGCCCAAA 58.836 47.619 0.00 0.00 0.00 3.28
2930 3343 1.074084 TGTAAGTCAAATCCCGCCCAA 59.926 47.619 0.00 0.00 0.00 4.12
2931 3344 0.693622 TGTAAGTCAAATCCCGCCCA 59.306 50.000 0.00 0.00 0.00 5.36
2932 3345 1.379527 CTGTAAGTCAAATCCCGCCC 58.620 55.000 0.00 0.00 0.00 6.13
2933 3346 1.379527 CCTGTAAGTCAAATCCCGCC 58.620 55.000 0.00 0.00 0.00 6.13
2934 3347 1.379527 CCCTGTAAGTCAAATCCCGC 58.620 55.000 0.00 0.00 0.00 6.13
2935 3348 1.557832 TCCCCTGTAAGTCAAATCCCG 59.442 52.381 0.00 0.00 0.00 5.14
2936 3349 3.953542 ATCCCCTGTAAGTCAAATCCC 57.046 47.619 0.00 0.00 0.00 3.85
2937 3350 4.855340 TGAATCCCCTGTAAGTCAAATCC 58.145 43.478 0.00 0.00 0.00 3.01
2938 3351 6.039829 GGATTGAATCCCCTGTAAGTCAAATC 59.960 42.308 13.26 0.00 43.88 2.17
2939 3352 5.893824 GGATTGAATCCCCTGTAAGTCAAAT 59.106 40.000 13.26 0.00 43.88 2.32
2940 3353 5.261216 GGATTGAATCCCCTGTAAGTCAAA 58.739 41.667 13.26 0.00 43.88 2.69
2941 3354 4.855340 GGATTGAATCCCCTGTAAGTCAA 58.145 43.478 13.26 0.00 43.88 3.18
2942 3355 4.503714 GGATTGAATCCCCTGTAAGTCA 57.496 45.455 13.26 0.00 43.88 3.41
2954 3367 4.952335 ACAGGGATTGAAGTGGATTGAATC 59.048 41.667 0.00 0.00 39.85 2.52
2955 3368 4.939255 ACAGGGATTGAAGTGGATTGAAT 58.061 39.130 0.00 0.00 0.00 2.57
2956 3369 4.202556 TGACAGGGATTGAAGTGGATTGAA 60.203 41.667 0.00 0.00 0.00 2.69
2957 3370 3.330405 TGACAGGGATTGAAGTGGATTGA 59.670 43.478 0.00 0.00 0.00 2.57
2958 3371 3.689347 TGACAGGGATTGAAGTGGATTG 58.311 45.455 0.00 0.00 0.00 2.67
2959 3372 4.387026 TTGACAGGGATTGAAGTGGATT 57.613 40.909 0.00 0.00 0.00 3.01
2960 3373 4.082125 GTTTGACAGGGATTGAAGTGGAT 58.918 43.478 0.00 0.00 0.00 3.41
2961 3374 3.486383 GTTTGACAGGGATTGAAGTGGA 58.514 45.455 0.00 0.00 0.00 4.02
2962 3375 2.558359 GGTTTGACAGGGATTGAAGTGG 59.442 50.000 0.00 0.00 0.00 4.00
2963 3376 2.558359 GGGTTTGACAGGGATTGAAGTG 59.442 50.000 0.00 0.00 0.00 3.16
2964 3377 2.490902 GGGGTTTGACAGGGATTGAAGT 60.491 50.000 0.00 0.00 0.00 3.01
2965 3378 2.171003 GGGGTTTGACAGGGATTGAAG 58.829 52.381 0.00 0.00 0.00 3.02
2966 3379 1.786441 AGGGGTTTGACAGGGATTGAA 59.214 47.619 0.00 0.00 0.00 2.69
2967 3380 1.455822 AGGGGTTTGACAGGGATTGA 58.544 50.000 0.00 0.00 0.00 2.57
2968 3381 2.309136 AAGGGGTTTGACAGGGATTG 57.691 50.000 0.00 0.00 0.00 2.67
2969 3382 2.178984 TGAAAGGGGTTTGACAGGGATT 59.821 45.455 0.00 0.00 0.00 3.01
2970 3383 1.786441 TGAAAGGGGTTTGACAGGGAT 59.214 47.619 0.00 0.00 0.00 3.85
2971 3384 1.227249 TGAAAGGGGTTTGACAGGGA 58.773 50.000 0.00 0.00 0.00 4.20
2972 3385 2.080654 TTGAAAGGGGTTTGACAGGG 57.919 50.000 0.00 0.00 0.00 4.45
2973 3386 3.006859 GGAATTGAAAGGGGTTTGACAGG 59.993 47.826 0.00 0.00 0.00 4.00
2974 3387 3.006859 GGGAATTGAAAGGGGTTTGACAG 59.993 47.826 0.00 0.00 0.00 3.51
2975 3388 2.969262 GGGAATTGAAAGGGGTTTGACA 59.031 45.455 0.00 0.00 0.00 3.58
2976 3389 3.006859 CAGGGAATTGAAAGGGGTTTGAC 59.993 47.826 0.00 0.00 0.00 3.18
2977 3390 3.238597 CAGGGAATTGAAAGGGGTTTGA 58.761 45.455 0.00 0.00 0.00 2.69
2978 3391 2.972021 ACAGGGAATTGAAAGGGGTTTG 59.028 45.455 0.00 0.00 0.00 2.93
2979 3392 3.239449 GACAGGGAATTGAAAGGGGTTT 58.761 45.455 0.00 0.00 0.00 3.27
2980 3393 2.178984 TGACAGGGAATTGAAAGGGGTT 59.821 45.455 0.00 0.00 0.00 4.11
2981 3394 1.786441 TGACAGGGAATTGAAAGGGGT 59.214 47.619 0.00 0.00 0.00 4.95
2982 3395 2.562738 GTTGACAGGGAATTGAAAGGGG 59.437 50.000 0.00 0.00 0.00 4.79
2983 3396 2.562738 GGTTGACAGGGAATTGAAAGGG 59.437 50.000 0.00 0.00 0.00 3.95
2984 3397 2.228822 CGGTTGACAGGGAATTGAAAGG 59.771 50.000 0.00 0.00 0.00 3.11
2985 3398 3.146066 TCGGTTGACAGGGAATTGAAAG 58.854 45.455 0.00 0.00 0.00 2.62
2986 3399 3.216187 TCGGTTGACAGGGAATTGAAA 57.784 42.857 0.00 0.00 0.00 2.69
2987 3400 2.882137 GTTCGGTTGACAGGGAATTGAA 59.118 45.455 0.00 0.00 0.00 2.69
2988 3401 2.158740 TGTTCGGTTGACAGGGAATTGA 60.159 45.455 0.00 0.00 0.00 2.57
2989 3402 2.031157 GTGTTCGGTTGACAGGGAATTG 60.031 50.000 0.00 0.00 0.00 2.32
2990 3403 2.227194 GTGTTCGGTTGACAGGGAATT 58.773 47.619 0.00 0.00 0.00 2.17
2991 3404 1.142060 TGTGTTCGGTTGACAGGGAAT 59.858 47.619 0.00 0.00 0.00 3.01
2992 3405 0.542333 TGTGTTCGGTTGACAGGGAA 59.458 50.000 0.00 0.00 0.00 3.97
2993 3406 0.105964 CTGTGTTCGGTTGACAGGGA 59.894 55.000 0.00 0.00 34.63 4.20
2994 3407 1.507141 GCTGTGTTCGGTTGACAGGG 61.507 60.000 0.00 0.00 38.04 4.45
2995 3408 1.507141 GGCTGTGTTCGGTTGACAGG 61.507 60.000 0.00 0.00 38.04 4.00
2996 3409 0.532862 AGGCTGTGTTCGGTTGACAG 60.533 55.000 0.00 0.00 40.14 3.51
2997 3410 0.753867 TAGGCTGTGTTCGGTTGACA 59.246 50.000 0.00 0.00 0.00 3.58
2998 3411 1.873698 TTAGGCTGTGTTCGGTTGAC 58.126 50.000 0.00 0.00 0.00 3.18
2999 3412 2.811431 CAATTAGGCTGTGTTCGGTTGA 59.189 45.455 0.00 0.00 0.00 3.18
3000 3413 2.095263 CCAATTAGGCTGTGTTCGGTTG 60.095 50.000 0.00 0.00 0.00 3.77
3001 3414 2.159382 CCAATTAGGCTGTGTTCGGTT 58.841 47.619 0.00 0.00 0.00 4.44
3002 3415 1.613255 CCCAATTAGGCTGTGTTCGGT 60.613 52.381 0.00 0.00 35.39 4.69
3003 3416 1.094785 CCCAATTAGGCTGTGTTCGG 58.905 55.000 0.00 0.00 35.39 4.30
3004 3417 2.107950 TCCCAATTAGGCTGTGTTCG 57.892 50.000 0.00 0.00 35.39 3.95
3005 3418 3.131046 CCAATCCCAATTAGGCTGTGTTC 59.869 47.826 0.00 0.00 35.39 3.18
3006 3419 3.099141 CCAATCCCAATTAGGCTGTGTT 58.901 45.455 0.00 0.00 35.39 3.32
3007 3420 2.738743 CCAATCCCAATTAGGCTGTGT 58.261 47.619 0.00 0.00 35.39 3.72
3008 3421 1.410153 GCCAATCCCAATTAGGCTGTG 59.590 52.381 0.00 0.00 36.72 3.66
3009 3422 1.006998 TGCCAATCCCAATTAGGCTGT 59.993 47.619 0.00 0.00 38.65 4.40
3010 3423 1.410153 GTGCCAATCCCAATTAGGCTG 59.590 52.381 0.00 0.00 38.65 4.85
3011 3424 1.689258 GGTGCCAATCCCAATTAGGCT 60.689 52.381 0.00 0.00 38.65 4.58
3012 3425 0.752658 GGTGCCAATCCCAATTAGGC 59.247 55.000 0.00 0.00 38.49 3.93
3013 3426 2.034124 CTGGTGCCAATCCCAATTAGG 58.966 52.381 0.00 0.00 37.03 2.69
3032 3445 2.715046 ACATCATTTGATCCACGCACT 58.285 42.857 0.00 0.00 31.21 4.40
3054 3467 2.614013 TCCCTCTCCAAAGCCCCC 60.614 66.667 0.00 0.00 0.00 5.40
3093 3507 0.462047 CTTACCGCTCCATCCACCAC 60.462 60.000 0.00 0.00 0.00 4.16
3106 3520 0.731514 TCGTTCTCGCTTGCTTACCG 60.732 55.000 0.00 0.00 36.96 4.02
3145 3559 4.148825 CCCCTCTCGTTGCTCCCG 62.149 72.222 0.00 0.00 0.00 5.14
3147 3561 4.821589 CGCCCCTCTCGTTGCTCC 62.822 72.222 0.00 0.00 0.00 4.70
3164 3578 0.301687 TCGATCGAGTACGTTACCGC 59.698 55.000 15.15 0.00 40.69 5.68
3165 3579 2.937994 ATCGATCGAGTACGTTACCG 57.062 50.000 23.84 0.00 40.69 4.02
3167 3581 3.242870 ACCCAATCGATCGAGTACGTTAC 60.243 47.826 23.84 0.00 40.69 2.50
3248 3662 9.983024 TCTAAAGAGGATAGAAGAGAGAGAAAA 57.017 33.333 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.