Multiple sequence alignment - TraesCS2B01G478000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G478000 chr2B 100.000 4670 0 0 1 4670 675348039 675352708 0.000000e+00 8624
1 TraesCS2B01G478000 chr2D 94.144 4713 178 42 1 4670 564087378 564092035 0.000000e+00 7084
2 TraesCS2B01G478000 chr2A 95.762 4365 153 12 328 4670 704769008 704773362 0.000000e+00 7007
3 TraesCS2B01G478000 chr2A 91.844 282 19 2 1 278 704768713 704768994 1.580000e-104 390


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G478000 chr2B 675348039 675352708 4669 False 8624.0 8624 100.000 1 4670 1 chr2B.!!$F1 4669
1 TraesCS2B01G478000 chr2D 564087378 564092035 4657 False 7084.0 7084 94.144 1 4670 1 chr2D.!!$F1 4669
2 TraesCS2B01G478000 chr2A 704768713 704773362 4649 False 3698.5 7007 93.803 1 4670 2 chr2A.!!$F1 4669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 292 1.056700 ATAAGAGGTGCCCAGCCGAT 61.057 55.000 0.0 0.0 0.00 4.18 F
449 464 1.134491 CCTTCCCCGTCAACTCCATAC 60.134 57.143 0.0 0.0 0.00 2.39 F
1968 1992 1.134580 CATGCTCAGGTGATTCGGAGT 60.135 52.381 0.0 0.0 0.00 3.85 F
3516 3540 0.407139 ACTTGCCTTCTTGGATGCCT 59.593 50.000 0.0 0.0 38.35 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 1771 0.034186 TCAGGCATGCCCTCGAAAAT 60.034 50.0 33.14 9.27 44.09 1.82 R
1976 2000 0.100503 GGCAACGTATGGGTCAATGC 59.899 55.0 0.00 0.00 0.00 3.56 R
3612 3636 0.250124 AGTGGTGAAATCGAACGGCA 60.250 50.0 0.00 0.00 0.00 5.69 R
4377 4409 0.469892 CCAAGGGCAATATGGGGGTC 60.470 60.0 0.00 0.00 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 90 7.786030 CAGAGGTTCTGTCAGATATCCTTAAA 58.214 38.462 17.22 0.00 39.58 1.52
116 119 4.884164 ACTAGGTCCAATAATTCTGCAAGC 59.116 41.667 0.00 0.00 0.00 4.01
139 144 2.548057 CACCACCACTCATACACAACAC 59.452 50.000 0.00 0.00 0.00 3.32
140 145 1.798223 CCACCACTCATACACAACACG 59.202 52.381 0.00 0.00 0.00 4.49
278 283 7.283127 TGGAAATGATAAGAACATAAGAGGTGC 59.717 37.037 0.00 0.00 0.00 5.01
282 287 3.356529 AAGAACATAAGAGGTGCCCAG 57.643 47.619 0.00 0.00 0.00 4.45
283 288 1.065126 AGAACATAAGAGGTGCCCAGC 60.065 52.381 0.00 0.00 0.00 4.85
285 290 1.524621 CATAAGAGGTGCCCAGCCG 60.525 63.158 0.00 0.00 0.00 5.52
287 292 1.056700 ATAAGAGGTGCCCAGCCGAT 61.057 55.000 0.00 0.00 0.00 4.18
289 294 3.785859 GAGGTGCCCAGCCGATCA 61.786 66.667 0.00 0.00 0.00 2.92
290 295 4.101448 AGGTGCCCAGCCGATCAC 62.101 66.667 0.00 0.00 0.00 3.06
291 296 4.408821 GGTGCCCAGCCGATCACA 62.409 66.667 0.00 0.00 0.00 3.58
295 310 1.817099 GCCCAGCCGATCACAGAAG 60.817 63.158 0.00 0.00 0.00 2.85
301 316 4.384056 CCAGCCGATCACAGAAGAAATAT 58.616 43.478 0.00 0.00 0.00 1.28
449 464 1.134491 CCTTCCCCGTCAACTCCATAC 60.134 57.143 0.00 0.00 0.00 2.39
462 477 7.648510 CGTCAACTCCATACTAACTATTTCTCC 59.351 40.741 0.00 0.00 0.00 3.71
500 515 7.972832 AATCACTAAAACAGACCACGAAATA 57.027 32.000 0.00 0.00 0.00 1.40
519 534 2.285827 ATTCTCACTAGCAGCACGAC 57.714 50.000 0.00 0.00 0.00 4.34
565 580 2.508300 ACCCTAAGCACGTATCCCAATT 59.492 45.455 0.00 0.00 0.00 2.32
755 771 4.882396 GCTCCTCTTCCTCGCCGC 62.882 72.222 0.00 0.00 0.00 6.53
862 879 1.600636 CAGGCAAGGCGAGGAACAA 60.601 57.895 0.00 0.00 0.00 2.83
879 896 6.149633 AGGAACAATTTACGCTTTCACATTC 58.850 36.000 0.00 0.00 0.00 2.67
896 913 2.754946 TTCGGAAAACGGTATCTGCT 57.245 45.000 0.00 0.00 44.45 4.24
901 918 1.666189 GAAAACGGTATCTGCTCCAGC 59.334 52.381 0.00 0.00 42.50 4.85
926 947 2.197324 GGTCCACACCCAGGCAAA 59.803 61.111 0.00 0.00 36.54 3.68
928 949 1.903404 GTCCACACCCAGGCAAAGG 60.903 63.158 0.00 0.00 0.00 3.11
936 957 1.174712 CCCAGGCAAAGGTCACACAG 61.175 60.000 0.00 0.00 0.00 3.66
951 972 2.743928 CAGCTCGGTCCCACTTGC 60.744 66.667 0.00 0.00 0.00 4.01
976 997 2.805353 CGCTTCACGTCCACCTCG 60.805 66.667 0.00 0.00 36.87 4.63
1043 1067 4.779733 GCCGTCTCCTCCCCCTCA 62.780 72.222 0.00 0.00 0.00 3.86
1317 1341 4.973168 ACATAATGATGAATGGGTACGCT 58.027 39.130 11.59 0.00 36.48 5.07
1343 1367 4.519437 CAGCCTGAGCGATGCCGA 62.519 66.667 0.00 0.00 46.67 5.54
1350 1374 2.519541 AGCGATGCCGAGGAGCTA 60.520 61.111 0.00 0.00 36.28 3.32
1365 1389 2.300437 GGAGCTATTCGGTAGAATGCCT 59.700 50.000 4.20 0.88 45.86 4.75
1392 1416 1.625818 GATGTCACCTCCTGGAACACT 59.374 52.381 0.00 0.00 36.17 3.55
1427 1451 2.731691 TTCCAGAGCGGCCAGTTCAC 62.732 60.000 2.24 0.00 31.99 3.18
1463 1487 1.643868 TTCATGTCCATGCGCCGAAC 61.644 55.000 4.18 0.00 38.65 3.95
1604 1628 2.738521 CCCTGACGTTGCGACTGG 60.739 66.667 1.84 9.10 39.31 4.00
1747 1771 3.603532 GGTGTTGATCATGCTCTTGAGA 58.396 45.455 0.00 0.00 0.00 3.27
1756 1780 4.186926 TCATGCTCTTGAGATTTTCGAGG 58.813 43.478 1.30 0.00 37.82 4.63
1968 1992 1.134580 CATGCTCAGGTGATTCGGAGT 60.135 52.381 0.00 0.00 0.00 3.85
2028 2052 6.210385 TGGTTGAACTATATGCAAAATGTGGT 59.790 34.615 0.00 0.00 0.00 4.16
2162 2186 5.047731 TCGAACTGTTCAATCAGATGAGAGT 60.048 40.000 19.56 0.00 38.63 3.24
2167 2191 6.106648 TGTTCAATCAGATGAGAGTTGAGT 57.893 37.500 0.00 0.00 31.28 3.41
2298 2322 1.203523 ACTCGAGCTGTTGTCATCTCC 59.796 52.381 13.61 0.00 34.49 3.71
2313 2337 5.221521 TGTCATCTCCAATTCCCTTATCTCG 60.222 44.000 0.00 0.00 0.00 4.04
2332 2356 1.529622 CGATGTATGCAAAGTGTGGCG 60.530 52.381 0.00 0.00 0.00 5.69
2595 2619 4.820894 ACCTGACTGGGTTACTTATGTC 57.179 45.455 3.15 0.00 41.11 3.06
2955 2979 5.508994 CGTGCAGGAGGGAAAGTTTTATTTT 60.509 40.000 0.00 0.00 0.00 1.82
3165 3189 1.407979 GCAGAATTGGCAGCTAAGCAT 59.592 47.619 0.00 0.00 35.83 3.79
3321 3345 4.261801 GCTACAGCTGGATGGAAGTTAAA 58.738 43.478 19.93 0.00 38.21 1.52
3328 3352 6.760770 CAGCTGGATGGAAGTTAAAAACAAAA 59.239 34.615 5.57 0.00 0.00 2.44
3333 3357 9.844257 TGGATGGAAGTTAAAAACAAAATTCAT 57.156 25.926 0.00 0.00 33.72 2.57
3356 3380 3.123804 TCTTCAAAGCAGAAGACGTGAC 58.876 45.455 10.92 0.00 46.62 3.67
3411 3435 6.349243 CTAGATGAGCTCATGGAGAAGATT 57.651 41.667 33.33 6.37 36.57 2.40
3417 3441 1.598132 CTCATGGAGAAGATTGCGCAG 59.402 52.381 11.31 0.00 0.00 5.18
3505 3529 2.905415 TGGGATCATGAACTTGCCTT 57.095 45.000 0.00 0.00 0.00 4.35
3516 3540 0.407139 ACTTGCCTTCTTGGATGCCT 59.593 50.000 0.00 0.00 38.35 4.75
3612 3636 2.496070 TCGGGAGTTTGTGATTCGAGAT 59.504 45.455 0.00 0.00 0.00 2.75
3673 3697 0.976073 CGGGGACTACTGGTGACCAT 60.976 60.000 4.03 0.00 30.82 3.55
3674 3698 0.541863 GGGGACTACTGGTGACCATG 59.458 60.000 4.03 1.83 30.82 3.66
3679 3703 3.054361 GGACTACTGGTGACCATGGAAAT 60.054 47.826 21.47 0.00 30.82 2.17
3696 3720 5.711698 TGGAAATCCCCTGTAGTTCTTTTT 58.288 37.500 0.00 0.00 34.29 1.94
3747 3771 5.046520 ACCACAGAGGAGTAAAATGTCTACC 60.047 44.000 0.00 0.00 41.22 3.18
3793 3817 3.055819 TCTGTCCACTATTTGTCTGAGGC 60.056 47.826 0.00 0.00 0.00 4.70
3808 3832 3.890674 GGCTTAGGTTCGCCAGTG 58.109 61.111 0.00 0.00 45.59 3.66
3810 3834 1.003718 GCTTAGGTTCGCCAGTGGT 60.004 57.895 11.74 0.00 40.60 4.16
4004 4036 3.200825 AGGAAGTAACATCACATCCAGGG 59.799 47.826 0.94 0.00 38.49 4.45
4054 4086 3.826157 TGGGACAAGCCATTTTAAGAGTG 59.174 43.478 0.00 0.00 38.95 3.51
4249 4281 2.993899 TCGAAAATCGCAGGAAGTCTTC 59.006 45.455 3.80 3.80 40.21 2.87
4257 4289 1.795889 GCAGGAAGTCTTCGTAGAGCG 60.796 57.143 7.45 0.00 38.43 5.03
4313 4345 4.041740 TCTGTATGTACATCGTGGAAGC 57.958 45.455 12.68 0.00 35.36 3.86
4377 4409 1.438651 TTCTCATTGTTCTTCGCCCG 58.561 50.000 0.00 0.00 0.00 6.13
4431 4463 5.185454 ACAAATTCTCCATAGTCAATGCGA 58.815 37.500 0.00 0.00 33.92 5.10
4505 4548 9.378551 TGTTACTAACAGAACCATAAGCATTAG 57.621 33.333 0.00 0.00 36.25 1.73
4616 4663 7.148086 GCACAAATCTATGTCCACTGGAATTTA 60.148 37.037 0.00 0.00 31.38 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 90 7.615365 TGCAGAATTATTGGACCTAGTTTTCAT 59.385 33.333 0.00 0.00 0.00 2.57
103 106 2.493278 GGTGGTGTGCTTGCAGAATTAT 59.507 45.455 0.00 0.00 0.00 1.28
116 119 2.542020 TGTGTATGAGTGGTGGTGTG 57.458 50.000 0.00 0.00 0.00 3.82
140 145 4.104143 CCTACACGGCGAATCACC 57.896 61.111 16.62 0.00 0.00 4.02
214 219 2.578940 AGGGTTGATTGGGACGGAATTA 59.421 45.455 0.00 0.00 0.00 1.40
216 221 0.999712 AGGGTTGATTGGGACGGAAT 59.000 50.000 0.00 0.00 0.00 3.01
278 283 0.250234 TTCTTCTGTGATCGGCTGGG 59.750 55.000 0.00 0.00 0.00 4.45
282 287 5.406780 CCTGTATATTTCTTCTGTGATCGGC 59.593 44.000 0.00 0.00 0.00 5.54
283 288 6.749139 TCCTGTATATTTCTTCTGTGATCGG 58.251 40.000 0.00 0.00 0.00 4.18
285 290 8.986847 CACATCCTGTATATTTCTTCTGTGATC 58.013 37.037 0.00 0.00 33.82 2.92
287 292 6.763135 GCACATCCTGTATATTTCTTCTGTGA 59.237 38.462 0.00 0.00 33.82 3.58
289 294 6.058183 GGCACATCCTGTATATTTCTTCTGT 58.942 40.000 0.00 0.00 0.00 3.41
290 295 6.057533 TGGCACATCCTGTATATTTCTTCTG 58.942 40.000 0.00 0.00 35.26 3.02
291 296 6.252599 TGGCACATCCTGTATATTTCTTCT 57.747 37.500 0.00 0.00 35.26 2.85
295 310 5.067674 TGCTTTGGCACATCCTGTATATTTC 59.932 40.000 0.00 0.00 44.28 2.17
449 464 8.430801 CTGATTTCAGTGGGAGAAATAGTTAG 57.569 38.462 0.00 0.00 43.60 2.34
482 497 7.876068 AGTGAGAATATTTCGTGGTCTGTTTTA 59.124 33.333 0.00 0.00 34.02 1.52
483 498 6.710744 AGTGAGAATATTTCGTGGTCTGTTTT 59.289 34.615 0.00 0.00 34.02 2.43
484 499 6.231211 AGTGAGAATATTTCGTGGTCTGTTT 58.769 36.000 0.00 0.00 34.02 2.83
500 515 1.468224 CGTCGTGCTGCTAGTGAGAAT 60.468 52.381 0.00 0.00 0.00 2.40
519 534 2.519175 CCGCCGTTTCCCGATTACG 61.519 63.158 0.00 0.00 39.56 3.18
565 580 5.833667 CCCTCTTACATCTGTACATGTCCTA 59.166 44.000 0.00 0.00 38.07 2.94
784 800 1.891811 CTCTGACTCTGTCCTTGCTCA 59.108 52.381 0.00 0.00 0.00 4.26
862 879 5.365403 TTTCCGAATGTGAAAGCGTAAAT 57.635 34.783 0.00 0.00 0.00 1.40
879 896 1.287425 GGAGCAGATACCGTTTTCCG 58.713 55.000 0.00 0.00 0.00 4.30
896 913 0.467290 GTGGACCAAAAGGTGCTGGA 60.467 55.000 7.66 0.00 36.49 3.86
901 918 0.396417 TGGGTGTGGACCAAAAGGTG 60.396 55.000 0.00 0.00 45.25 4.00
926 947 2.574955 GGACCGAGCTGTGTGACCT 61.575 63.158 0.00 0.00 0.00 3.85
928 949 2.048127 GGGACCGAGCTGTGTGAC 60.048 66.667 0.00 0.00 0.00 3.67
936 957 2.252072 TATGGCAAGTGGGACCGAGC 62.252 60.000 0.00 0.00 0.00 5.03
951 972 0.527817 GGACGTGAAGCGGAGTATGG 60.528 60.000 0.00 0.00 46.52 2.74
984 1005 1.659233 CATTCAAACACAGGCCGCA 59.341 52.632 0.00 0.00 0.00 5.69
1341 1365 3.827625 CATTCTACCGAATAGCTCCTCG 58.172 50.000 9.78 9.78 37.77 4.63
1343 1367 2.300437 GGCATTCTACCGAATAGCTCCT 59.700 50.000 0.00 0.00 37.77 3.69
1350 1374 2.900546 CCTCCTAGGCATTCTACCGAAT 59.099 50.000 2.96 0.00 40.43 3.34
1356 1380 3.116746 TGACATCCCTCCTAGGCATTCTA 60.117 47.826 2.96 0.00 32.73 2.10
1392 1416 1.112113 GGAAGTAGCCGGACATGAGA 58.888 55.000 5.05 0.00 0.00 3.27
1427 1451 0.103937 GAAGGTCTCCAGAGCATCCG 59.896 60.000 8.44 0.00 44.42 4.18
1604 1628 3.058983 TCTCACGAACATGTCAACAATGC 60.059 43.478 0.00 0.00 0.00 3.56
1662 1686 4.871933 AACAGTTGGCCTTTTAATCTGG 57.128 40.909 3.32 0.00 0.00 3.86
1698 1722 2.037136 GGCATAGCCCGCTAGCATG 61.037 63.158 16.45 11.33 44.06 4.06
1747 1771 0.034186 TCAGGCATGCCCTCGAAAAT 60.034 50.000 33.14 9.27 44.09 1.82
1756 1780 0.745845 ACATCTCGTTCAGGCATGCC 60.746 55.000 30.12 30.12 0.00 4.40
1968 1992 1.966901 ATGGGTCAATGCGCGGTAGA 61.967 55.000 8.83 0.00 0.00 2.59
1976 2000 0.100503 GGCAACGTATGGGTCAATGC 59.899 55.000 0.00 0.00 0.00 3.56
2028 2052 5.299279 CACTCTCCTTGCTTCCTTAAAACAA 59.701 40.000 0.00 0.00 0.00 2.83
2106 2130 3.253188 TGAAGCAACCATACTGCAAGAAC 59.747 43.478 0.00 0.00 42.48 3.01
2162 2186 5.614308 ACTGATCAACTGTCATCAACTCAA 58.386 37.500 0.00 0.00 0.00 3.02
2167 2191 4.579753 TGCAAACTGATCAACTGTCATCAA 59.420 37.500 0.00 0.00 0.00 2.57
2298 2322 5.934043 TGCATACATCGAGATAAGGGAATTG 59.066 40.000 0.00 0.00 0.00 2.32
2313 2337 1.737236 TCGCCACACTTTGCATACATC 59.263 47.619 0.00 0.00 0.00 3.06
2332 2356 9.316730 GAATATAGATTCAGCATTCTGGAGATC 57.683 37.037 5.20 0.00 41.12 2.75
2360 2384 2.238521 TGTCCCTTTCAGCCATCAAAC 58.761 47.619 0.00 0.00 0.00 2.93
2363 2387 2.225091 ACAATGTCCCTTTCAGCCATCA 60.225 45.455 0.00 0.00 0.00 3.07
2370 2394 5.044919 AGTCCATGATACAATGTCCCTTTCA 60.045 40.000 0.00 0.00 0.00 2.69
2595 2619 1.267806 GCACACCCTCTGAACAATGTG 59.732 52.381 0.00 0.00 40.29 3.21
2955 2979 6.166279 GTTGTGGTCTCTCTTCAACATATCA 58.834 40.000 0.00 0.00 38.41 2.15
3000 3024 1.021390 GGTCCACCATGCACGAGAAG 61.021 60.000 0.00 0.00 35.64 2.85
3098 3122 2.107141 CGCTAAGAAGAGCCCCCG 59.893 66.667 0.00 0.00 39.43 5.73
3165 3189 0.599204 GCGAGTCCAGGTCGAACAAA 60.599 55.000 1.87 0.00 39.92 2.83
3321 3345 9.985730 TCTGCTTTGAAGATATGAATTTTGTTT 57.014 25.926 0.00 0.00 0.00 2.83
3390 3414 4.744259 GCAATCTTCTCCATGAGCTCATCT 60.744 45.833 26.44 4.92 33.61 2.90
3396 3420 0.307146 GCGCAATCTTCTCCATGAGC 59.693 55.000 0.30 0.00 0.00 4.26
3411 3435 4.308458 ACGTACCCAAGCTGCGCA 62.308 61.111 10.98 10.98 0.00 6.09
3417 3441 1.079336 GGTCCTCACGTACCCAAGC 60.079 63.158 0.00 0.00 0.00 4.01
3420 3444 1.676635 CTCGGTCCTCACGTACCCA 60.677 63.158 0.00 0.00 31.68 4.51
3447 3471 2.100418 CTCGCTGTGATGGATCTCAGAA 59.900 50.000 18.50 7.89 46.08 3.02
3516 3540 4.096231 CGCAGGTTTTTCATGATGTGGATA 59.904 41.667 0.00 0.00 0.00 2.59
3612 3636 0.250124 AGTGGTGAAATCGAACGGCA 60.250 50.000 0.00 0.00 0.00 5.69
3660 3684 3.545703 GGATTTCCATGGTCACCAGTAG 58.454 50.000 12.58 0.00 36.75 2.57
3673 3697 5.333566 AAAAGAACTACAGGGGATTTCCA 57.666 39.130 0.00 0.00 37.91 3.53
3674 3698 6.010850 AGAAAAAGAACTACAGGGGATTTCC 58.989 40.000 0.00 0.00 0.00 3.13
3679 3703 4.658901 ACAGAGAAAAAGAACTACAGGGGA 59.341 41.667 0.00 0.00 0.00 4.81
3696 3720 2.025155 GAATCTGACGGGCTACAGAGA 58.975 52.381 0.00 0.00 44.50 3.10
3793 3817 1.804748 GAAACCACTGGCGAACCTAAG 59.195 52.381 0.00 0.00 36.63 2.18
3808 3832 1.081442 CGGCGCTTTCAAGGAAACC 60.081 57.895 7.64 0.00 0.00 3.27
3810 3834 0.521291 CATCGGCGCTTTCAAGGAAA 59.479 50.000 7.64 0.00 0.00 3.13
3835 3867 2.439135 TGCACATAGCTATCACATGGGT 59.561 45.455 2.34 0.00 45.94 4.51
3867 3899 4.181010 CTGTCCCTGGCATCCCCG 62.181 72.222 0.00 0.00 35.87 5.73
4004 4036 3.829948 CATGTCCAGTTTGATGAACAGC 58.170 45.455 0.00 0.00 40.84 4.40
4054 4086 6.876257 CCTACTATATCTGCCTGGAATTGTTC 59.124 42.308 0.00 0.00 0.00 3.18
4249 4281 1.030488 TCCTGTCTTCCCGCTCTACG 61.030 60.000 0.00 0.00 43.15 3.51
4257 4289 3.983044 TTAGCTTCTTCCTGTCTTCCC 57.017 47.619 0.00 0.00 0.00 3.97
4293 4325 3.123804 GGCTTCCACGATGTACATACAG 58.876 50.000 8.71 6.15 39.92 2.74
4294 4326 2.764010 AGGCTTCCACGATGTACATACA 59.236 45.455 8.71 0.00 40.98 2.29
4295 4327 3.454371 AGGCTTCCACGATGTACATAC 57.546 47.619 8.71 1.95 0.00 2.39
4296 4328 4.466827 TCTAGGCTTCCACGATGTACATA 58.533 43.478 8.71 0.00 0.00 2.29
4297 4329 3.296854 TCTAGGCTTCCACGATGTACAT 58.703 45.455 8.43 8.43 0.00 2.29
4298 4330 2.730382 TCTAGGCTTCCACGATGTACA 58.270 47.619 0.00 0.00 0.00 2.90
4377 4409 0.469892 CCAAGGGCAATATGGGGGTC 60.470 60.000 0.00 0.00 0.00 4.46
4425 4457 2.198827 TTTGTCAGGATGGTCGCATT 57.801 45.000 0.00 0.00 36.16 3.56
4431 4463 2.373169 TGCTCTCTTTTGTCAGGATGGT 59.627 45.455 0.00 0.00 36.16 3.55
4505 4548 7.917505 ACATAGCTCATTTGCTGCTTTATTAAC 59.082 33.333 0.00 0.00 43.87 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.