Multiple sequence alignment - TraesCS2B01G477500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G477500 chr2B 100.000 2183 0 0 373 2555 674721872 674724054 0.000000e+00 4032.0
1 TraesCS2B01G477500 chr2B 97.139 699 18 2 1859 2555 617876911 617877609 0.000000e+00 1179.0
2 TraesCS2B01G477500 chr2B 87.810 443 46 3 964 1406 675454663 675455097 1.750000e-141 512.0
3 TraesCS2B01G477500 chr2B 100.000 38 0 0 1 38 674721500 674721537 1.270000e-08 71.3
4 TraesCS2B01G477500 chr2A 90.415 1252 43 28 639 1848 704004551 704005767 0.000000e+00 1576.0
5 TraesCS2B01G477500 chr2A 96.996 699 18 2 1858 2555 562725842 562725146 0.000000e+00 1171.0
6 TraesCS2B01G477500 chr2A 81.203 266 33 8 381 645 571894195 571893946 5.580000e-47 198.0
7 TraesCS2B01G477500 chr2D 91.481 1080 37 20 639 1698 563958211 563959255 0.000000e+00 1434.0
8 TraesCS2B01G477500 chr2D 85.031 481 41 12 1208 1682 563961247 563961702 6.440000e-126 460.0
9 TraesCS2B01G477500 chr2D 81.181 271 40 5 373 642 578576267 578576007 9.260000e-50 207.0
10 TraesCS2B01G477500 chr2D 92.481 133 9 1 1716 1848 563959376 563959507 3.360000e-44 189.0
11 TraesCS2B01G477500 chr2D 90.756 119 7 3 1716 1831 563962074 563962191 3.400000e-34 156.0
12 TraesCS2B01G477500 chr7B 97.432 701 14 3 1859 2555 591376662 591375962 0.000000e+00 1192.0
13 TraesCS2B01G477500 chr7B 97.282 699 17 2 1859 2555 45432704 45432006 0.000000e+00 1184.0
14 TraesCS2B01G477500 chr7B 96.280 699 24 2 1858 2555 697641712 697642409 0.000000e+00 1146.0
15 TraesCS2B01G477500 chr7B 95.994 699 26 2 1858 2555 62664440 62663743 0.000000e+00 1134.0
16 TraesCS2B01G477500 chr7B 82.946 258 29 7 385 642 45856986 45856744 4.280000e-53 219.0
17 TraesCS2B01G477500 chr1B 97.126 696 17 3 1859 2552 491701158 491701852 0.000000e+00 1171.0
18 TraesCS2B01G477500 chr1B 87.778 90 11 0 1307 1396 144928368 144928457 3.480000e-19 106.0
19 TraesCS2B01G477500 chr6B 96.275 698 23 2 1859 2555 126547984 126548679 0.000000e+00 1142.0
20 TraesCS2B01G477500 chr6B 95.125 718 28 6 1840 2555 669339977 669340689 0.000000e+00 1125.0
21 TraesCS2B01G477500 chr6B 76.457 429 63 24 1078 1496 519814107 519813707 5.580000e-47 198.0
22 TraesCS2B01G477500 chr1D 85.000 260 29 8 376 635 205084232 205084481 3.260000e-64 255.0
23 TraesCS2B01G477500 chr1D 81.853 259 33 6 385 643 480076382 480076138 3.330000e-49 206.0
24 TraesCS2B01G477500 chr7A 81.985 272 35 6 374 645 568858055 568857798 4.280000e-53 219.0
25 TraesCS2B01G477500 chr3D 81.985 272 35 6 374 645 490732530 490732273 4.280000e-53 219.0
26 TraesCS2B01G477500 chr1A 81.818 264 33 8 374 635 426347285 426347035 9.260000e-50 207.0
27 TraesCS2B01G477500 chr1A 80.586 273 37 8 374 645 283489655 283489398 2.010000e-46 196.0
28 TraesCS2B01G477500 chr1A 81.651 109 17 3 1304 1411 468684714 468684608 1.260000e-13 87.9
29 TraesCS2B01G477500 chr6D 76.102 431 64 24 1078 1496 344300357 344299954 3.360000e-44 189.0
30 TraesCS2B01G477500 chr6A 84.021 194 31 0 1303 1496 484848275 484848082 1.210000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G477500 chr2B 674721500 674724054 2554 False 2051.65 4032 100.00000 1 2555 2 chr2B.!!$F3 2554
1 TraesCS2B01G477500 chr2B 617876911 617877609 698 False 1179.00 1179 97.13900 1859 2555 1 chr2B.!!$F1 696
2 TraesCS2B01G477500 chr2A 704004551 704005767 1216 False 1576.00 1576 90.41500 639 1848 1 chr2A.!!$F1 1209
3 TraesCS2B01G477500 chr2A 562725146 562725842 696 True 1171.00 1171 96.99600 1858 2555 1 chr2A.!!$R1 697
4 TraesCS2B01G477500 chr2D 563958211 563962191 3980 False 559.75 1434 89.93725 639 1848 4 chr2D.!!$F1 1209
5 TraesCS2B01G477500 chr7B 591375962 591376662 700 True 1192.00 1192 97.43200 1859 2555 1 chr7B.!!$R4 696
6 TraesCS2B01G477500 chr7B 45432006 45432704 698 True 1184.00 1184 97.28200 1859 2555 1 chr7B.!!$R1 696
7 TraesCS2B01G477500 chr7B 697641712 697642409 697 False 1146.00 1146 96.28000 1858 2555 1 chr7B.!!$F1 697
8 TraesCS2B01G477500 chr7B 62663743 62664440 697 True 1134.00 1134 95.99400 1858 2555 1 chr7B.!!$R3 697
9 TraesCS2B01G477500 chr1B 491701158 491701852 694 False 1171.00 1171 97.12600 1859 2552 1 chr1B.!!$F2 693
10 TraesCS2B01G477500 chr6B 126547984 126548679 695 False 1142.00 1142 96.27500 1859 2555 1 chr6B.!!$F1 696
11 TraesCS2B01G477500 chr6B 669339977 669340689 712 False 1125.00 1125 95.12500 1840 2555 1 chr6B.!!$F2 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 976 0.037512 CAGCACCAGGACAGACAGAG 60.038 60.0 0.0 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2330 0.107459 AAGAAGAAGCTGGGGCGATC 60.107 55.0 0.0 0.0 44.37 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
398 399 9.213777 AGGAGTGACACTTAGGATAAATAATGA 57.786 33.333 10.01 0.00 0.00 2.57
399 400 9.482627 GGAGTGACACTTAGGATAAATAATGAG 57.517 37.037 10.01 0.00 0.00 2.90
400 401 9.482627 GAGTGACACTTAGGATAAATAATGAGG 57.517 37.037 10.01 0.00 0.00 3.86
401 402 8.993424 AGTGACACTTAGGATAAATAATGAGGT 58.007 33.333 1.07 0.00 0.00 3.85
402 403 9.046296 GTGACACTTAGGATAAATAATGAGGTG 57.954 37.037 0.00 0.00 0.00 4.00
403 404 8.988060 TGACACTTAGGATAAATAATGAGGTGA 58.012 33.333 0.00 0.00 0.00 4.02
404 405 9.832445 GACACTTAGGATAAATAATGAGGTGAA 57.168 33.333 0.00 0.00 0.00 3.18
405 406 9.838339 ACACTTAGGATAAATAATGAGGTGAAG 57.162 33.333 0.00 0.00 0.00 3.02
406 407 9.277783 CACTTAGGATAAATAATGAGGTGAAGG 57.722 37.037 0.00 0.00 0.00 3.46
407 408 9.225682 ACTTAGGATAAATAATGAGGTGAAGGA 57.774 33.333 0.00 0.00 0.00 3.36
408 409 9.717942 CTTAGGATAAATAATGAGGTGAAGGAG 57.282 37.037 0.00 0.00 0.00 3.69
409 410 7.937700 AGGATAAATAATGAGGTGAAGGAGA 57.062 36.000 0.00 0.00 0.00 3.71
410 411 7.972301 AGGATAAATAATGAGGTGAAGGAGAG 58.028 38.462 0.00 0.00 0.00 3.20
411 412 7.791766 AGGATAAATAATGAGGTGAAGGAGAGA 59.208 37.037 0.00 0.00 0.00 3.10
412 413 8.093927 GGATAAATAATGAGGTGAAGGAGAGAG 58.906 40.741 0.00 0.00 0.00 3.20
413 414 8.789767 ATAAATAATGAGGTGAAGGAGAGAGA 57.210 34.615 0.00 0.00 0.00 3.10
414 415 7.502060 AAATAATGAGGTGAAGGAGAGAGAA 57.498 36.000 0.00 0.00 0.00 2.87
415 416 4.817318 AATGAGGTGAAGGAGAGAGAAC 57.183 45.455 0.00 0.00 0.00 3.01
416 417 3.534357 TGAGGTGAAGGAGAGAGAACT 57.466 47.619 0.00 0.00 0.00 3.01
417 418 3.426615 TGAGGTGAAGGAGAGAGAACTC 58.573 50.000 0.00 0.00 42.90 3.01
418 419 3.181428 TGAGGTGAAGGAGAGAGAACTCA 60.181 47.826 4.64 0.00 44.79 3.41
419 420 4.023291 GAGGTGAAGGAGAGAGAACTCAT 58.977 47.826 4.64 0.00 44.79 2.90
420 421 5.197451 GAGGTGAAGGAGAGAGAACTCATA 58.803 45.833 4.64 0.00 44.79 2.15
421 422 5.584913 AGGTGAAGGAGAGAGAACTCATAA 58.415 41.667 4.64 0.00 44.79 1.90
422 423 5.656416 AGGTGAAGGAGAGAGAACTCATAAG 59.344 44.000 4.64 0.00 44.79 1.73
423 424 5.654650 GGTGAAGGAGAGAGAACTCATAAGA 59.345 44.000 4.64 0.00 44.79 2.10
424 425 6.153680 GGTGAAGGAGAGAGAACTCATAAGAA 59.846 42.308 4.64 0.00 44.79 2.52
425 426 7.310113 GGTGAAGGAGAGAGAACTCATAAGAAA 60.310 40.741 4.64 0.00 44.79 2.52
426 427 8.091449 GTGAAGGAGAGAGAACTCATAAGAAAA 58.909 37.037 4.64 0.00 44.79 2.29
427 428 8.310382 TGAAGGAGAGAGAACTCATAAGAAAAG 58.690 37.037 4.64 0.00 44.79 2.27
428 429 7.181569 AGGAGAGAGAACTCATAAGAAAAGG 57.818 40.000 4.64 0.00 44.79 3.11
429 430 5.815222 GGAGAGAGAACTCATAAGAAAAGGC 59.185 44.000 4.64 0.00 44.79 4.35
430 431 6.351796 GGAGAGAGAACTCATAAGAAAAGGCT 60.352 42.308 4.64 0.00 44.79 4.58
431 432 7.014988 AGAGAGAACTCATAAGAAAAGGCTT 57.985 36.000 0.00 0.00 44.79 4.35
432 433 6.878389 AGAGAGAACTCATAAGAAAAGGCTTG 59.122 38.462 0.00 0.00 44.79 4.01
433 434 6.538263 AGAGAACTCATAAGAAAAGGCTTGT 58.462 36.000 0.00 0.00 0.00 3.16
434 435 6.652900 AGAGAACTCATAAGAAAAGGCTTGTC 59.347 38.462 9.51 9.51 0.00 3.18
435 436 6.538263 AGAACTCATAAGAAAAGGCTTGTCT 58.462 36.000 14.33 14.33 0.00 3.41
436 437 7.001073 AGAACTCATAAGAAAAGGCTTGTCTT 58.999 34.615 30.04 30.04 35.77 3.01
437 438 6.809630 ACTCATAAGAAAAGGCTTGTCTTC 57.190 37.500 30.86 17.17 33.70 2.87
438 439 6.538263 ACTCATAAGAAAAGGCTTGTCTTCT 58.462 36.000 30.86 21.01 33.70 2.85
439 440 6.652900 ACTCATAAGAAAAGGCTTGTCTTCTC 59.347 38.462 30.86 8.39 33.70 2.87
440 441 6.773638 TCATAAGAAAAGGCTTGTCTTCTCT 58.226 36.000 30.86 16.87 33.70 3.10
441 442 7.227156 TCATAAGAAAAGGCTTGTCTTCTCTT 58.773 34.615 30.86 18.21 37.66 2.85
442 443 8.375506 TCATAAGAAAAGGCTTGTCTTCTCTTA 58.624 33.333 30.86 16.85 39.30 2.10
443 444 9.171877 CATAAGAAAAGGCTTGTCTTCTCTTAT 57.828 33.333 30.86 18.17 42.82 1.73
444 445 9.746457 ATAAGAAAAGGCTTGTCTTCTCTTATT 57.254 29.630 30.86 11.70 40.94 1.40
445 446 8.470657 AAGAAAAGGCTTGTCTTCTCTTATTT 57.529 30.769 23.96 2.07 33.68 1.40
446 447 9.574516 AAGAAAAGGCTTGTCTTCTCTTATTTA 57.425 29.630 23.96 0.00 33.68 1.40
447 448 9.574516 AGAAAAGGCTTGTCTTCTCTTATTTAA 57.425 29.630 14.33 0.00 0.00 1.52
448 449 9.833182 GAAAAGGCTTGTCTTCTCTTATTTAAG 57.167 33.333 10.26 0.00 34.65 1.85
449 450 9.574516 AAAAGGCTTGTCTTCTCTTATTTAAGA 57.425 29.630 0.00 0.44 39.82 2.10
488 489 9.762933 AGATAAGACAAGAGATGATCTTTTAGC 57.237 33.333 0.00 0.00 46.49 3.09
489 490 9.539825 GATAAGACAAGAGATGATCTTTTAGCA 57.460 33.333 0.00 0.00 46.49 3.49
490 491 7.608308 AAGACAAGAGATGATCTTTTAGCAC 57.392 36.000 0.00 0.00 46.49 4.40
491 492 5.809562 AGACAAGAGATGATCTTTTAGCACG 59.190 40.000 0.00 0.00 46.49 5.34
492 493 5.724328 ACAAGAGATGATCTTTTAGCACGA 58.276 37.500 0.00 0.00 46.49 4.35
493 494 6.344500 ACAAGAGATGATCTTTTAGCACGAT 58.656 36.000 0.00 0.00 46.49 3.73
494 495 6.257411 ACAAGAGATGATCTTTTAGCACGATG 59.743 38.462 0.00 0.00 46.49 3.84
495 496 5.911752 AGAGATGATCTTTTAGCACGATGT 58.088 37.500 0.00 0.00 32.99 3.06
496 497 7.043961 AGAGATGATCTTTTAGCACGATGTA 57.956 36.000 0.00 0.00 32.99 2.29
497 498 7.665690 AGAGATGATCTTTTAGCACGATGTAT 58.334 34.615 0.00 0.00 32.99 2.29
498 499 7.812191 AGAGATGATCTTTTAGCACGATGTATC 59.188 37.037 0.00 0.00 32.99 2.24
499 500 7.665690 AGATGATCTTTTAGCACGATGTATCT 58.334 34.615 0.00 0.00 0.00 1.98
500 501 8.147058 AGATGATCTTTTAGCACGATGTATCTT 58.853 33.333 0.00 0.00 0.00 2.40
501 502 9.411801 GATGATCTTTTAGCACGATGTATCTTA 57.588 33.333 0.00 0.00 0.00 2.10
502 503 8.575565 TGATCTTTTAGCACGATGTATCTTAC 57.424 34.615 0.00 0.00 0.00 2.34
503 504 8.414003 TGATCTTTTAGCACGATGTATCTTACT 58.586 33.333 0.00 0.00 0.00 2.24
504 505 8.804688 ATCTTTTAGCACGATGTATCTTACTC 57.195 34.615 0.00 0.00 0.00 2.59
505 506 7.768240 TCTTTTAGCACGATGTATCTTACTCA 58.232 34.615 0.00 0.00 0.00 3.41
506 507 7.701078 TCTTTTAGCACGATGTATCTTACTCAC 59.299 37.037 0.00 0.00 0.00 3.51
507 508 4.308899 AGCACGATGTATCTTACTCACC 57.691 45.455 0.00 0.00 0.00 4.02
508 509 3.699538 AGCACGATGTATCTTACTCACCA 59.300 43.478 0.00 0.00 0.00 4.17
509 510 3.797256 GCACGATGTATCTTACTCACCAC 59.203 47.826 0.00 0.00 0.00 4.16
510 511 4.035684 CACGATGTATCTTACTCACCACG 58.964 47.826 0.00 0.00 0.00 4.94
511 512 3.693085 ACGATGTATCTTACTCACCACGT 59.307 43.478 0.00 0.00 0.00 4.49
512 513 4.157289 ACGATGTATCTTACTCACCACGTT 59.843 41.667 0.00 0.00 0.00 3.99
513 514 5.100259 CGATGTATCTTACTCACCACGTTT 58.900 41.667 0.00 0.00 0.00 3.60
514 515 5.575606 CGATGTATCTTACTCACCACGTTTT 59.424 40.000 0.00 0.00 0.00 2.43
515 516 6.090358 CGATGTATCTTACTCACCACGTTTTT 59.910 38.462 0.00 0.00 0.00 1.94
516 517 6.774354 TGTATCTTACTCACCACGTTTTTC 57.226 37.500 0.00 0.00 0.00 2.29
517 518 4.985044 ATCTTACTCACCACGTTTTTCG 57.015 40.909 0.00 0.00 46.00 3.46
518 519 4.044336 TCTTACTCACCACGTTTTTCGA 57.956 40.909 0.00 0.00 42.86 3.71
519 520 4.431809 TCTTACTCACCACGTTTTTCGAA 58.568 39.130 0.00 0.00 42.86 3.71
520 521 4.869297 TCTTACTCACCACGTTTTTCGAAA 59.131 37.500 6.47 6.47 42.86 3.46
521 522 5.524646 TCTTACTCACCACGTTTTTCGAAAT 59.475 36.000 12.12 0.00 42.86 2.17
522 523 4.625972 ACTCACCACGTTTTTCGAAATT 57.374 36.364 12.12 0.00 42.86 1.82
523 524 4.347813 ACTCACCACGTTTTTCGAAATTG 58.652 39.130 12.12 7.16 42.86 2.32
524 525 3.109619 TCACCACGTTTTTCGAAATTGC 58.890 40.909 12.12 4.30 42.86 3.56
525 526 3.112580 CACCACGTTTTTCGAAATTGCT 58.887 40.909 12.12 0.00 42.86 3.91
526 527 4.035324 TCACCACGTTTTTCGAAATTGCTA 59.965 37.500 12.12 0.00 42.86 3.49
527 528 4.378616 CACCACGTTTTTCGAAATTGCTAG 59.621 41.667 12.12 2.93 42.86 3.42
528 529 4.035909 ACCACGTTTTTCGAAATTGCTAGT 59.964 37.500 12.12 3.56 42.86 2.57
529 530 4.973663 CCACGTTTTTCGAAATTGCTAGTT 59.026 37.500 12.12 0.00 42.86 2.24
530 531 6.137415 CCACGTTTTTCGAAATTGCTAGTTA 58.863 36.000 12.12 0.00 42.86 2.24
531 532 6.799925 CCACGTTTTTCGAAATTGCTAGTTAT 59.200 34.615 12.12 0.00 42.86 1.89
532 533 7.325097 CCACGTTTTTCGAAATTGCTAGTTATT 59.675 33.333 12.12 0.00 42.86 1.40
533 534 8.147172 CACGTTTTTCGAAATTGCTAGTTATTG 58.853 33.333 12.12 0.00 42.86 1.90
534 535 8.071368 ACGTTTTTCGAAATTGCTAGTTATTGA 58.929 29.630 12.12 0.00 42.86 2.57
535 536 8.897809 CGTTTTTCGAAATTGCTAGTTATTGAA 58.102 29.630 12.12 0.00 42.86 2.69
600 601 9.844790 TTGTCATTTCTAGATTACATGCAAAAG 57.155 29.630 0.00 0.00 0.00 2.27
601 602 9.013229 TGTCATTTCTAGATTACATGCAAAAGT 57.987 29.630 0.00 0.00 0.00 2.66
602 603 9.846248 GTCATTTCTAGATTACATGCAAAAGTT 57.154 29.630 0.00 0.00 0.00 2.66
640 641 6.714810 TCTTATCAACCATTGTACATATGCCC 59.285 38.462 1.58 0.00 0.00 5.36
670 671 1.804326 CGCACACGCCACTAGTACC 60.804 63.158 0.00 0.00 33.11 3.34
676 677 2.029623 CACGCCACTAGTACCTACCAT 58.970 52.381 0.00 0.00 0.00 3.55
693 694 1.762957 CCATCACATACTTCCTCCGGT 59.237 52.381 0.00 0.00 0.00 5.28
795 802 1.823899 GCTTTATCCGCACCCCAGG 60.824 63.158 0.00 0.00 0.00 4.45
829 836 3.146847 CCAACGCCTCCTATAAAATCCC 58.853 50.000 0.00 0.00 0.00 3.85
833 845 2.353803 CGCCTCCTATAAAATCCCGAGG 60.354 54.545 0.00 0.00 39.94 4.63
894 906 1.134438 ACTTGTCACCTTCCTCCCCC 61.134 60.000 0.00 0.00 0.00 5.40
915 927 3.043999 AACGCATCCAGCTACCCCC 62.044 63.158 0.00 0.00 42.61 5.40
916 928 4.609018 CGCATCCAGCTACCCCCG 62.609 72.222 0.00 0.00 42.61 5.73
917 929 3.480133 GCATCCAGCTACCCCCGT 61.480 66.667 0.00 0.00 41.15 5.28
918 930 2.822399 CATCCAGCTACCCCCGTC 59.178 66.667 0.00 0.00 0.00 4.79
919 931 1.762460 CATCCAGCTACCCCCGTCT 60.762 63.158 0.00 0.00 0.00 4.18
920 932 1.457831 ATCCAGCTACCCCCGTCTC 60.458 63.158 0.00 0.00 0.00 3.36
921 933 2.948801 ATCCAGCTACCCCCGTCTCC 62.949 65.000 0.00 0.00 0.00 3.71
962 974 1.004080 CCAGCACCAGGACAGACAG 60.004 63.158 0.00 0.00 0.00 3.51
963 975 1.475169 CCAGCACCAGGACAGACAGA 61.475 60.000 0.00 0.00 0.00 3.41
964 976 0.037512 CAGCACCAGGACAGACAGAG 60.038 60.000 0.00 0.00 0.00 3.35
965 977 0.178950 AGCACCAGGACAGACAGAGA 60.179 55.000 0.00 0.00 0.00 3.10
966 978 0.037790 GCACCAGGACAGACAGAGAC 60.038 60.000 0.00 0.00 0.00 3.36
967 979 1.332195 CACCAGGACAGACAGAGACA 58.668 55.000 0.00 0.00 0.00 3.41
980 992 1.068885 CAGAGACACAGACAGGACGAC 60.069 57.143 0.00 0.00 0.00 4.34
982 994 1.729838 GACACAGACAGGACGACGC 60.730 63.158 0.00 0.00 0.00 5.19
985 997 2.807045 CAGACAGGACGACGCAGC 60.807 66.667 0.00 0.00 0.00 5.25
986 998 2.986413 AGACAGGACGACGCAGCT 60.986 61.111 0.00 0.00 0.00 4.24
987 999 2.807045 GACAGGACGACGCAGCTG 60.807 66.667 10.11 10.11 0.00 4.24
990 1002 4.731612 AGGACGACGCAGCTGCAG 62.732 66.667 36.03 28.85 42.21 4.41
995 1007 3.786586 GACGCAGCTGCAGCAGAC 61.787 66.667 38.24 25.22 45.16 3.51
1025 1037 1.676967 CCAGGAGGTTCTTGCAGGC 60.677 63.158 0.00 0.00 0.00 4.85
1254 1266 3.507009 GTCGCCTACGTCTCCGCT 61.507 66.667 0.00 0.00 41.18 5.52
1452 1467 4.570663 CGGATCCTCGCCGTCCAC 62.571 72.222 10.75 0.00 43.66 4.02
1639 1663 1.804748 GGAACCAGTCAACCAATCGAC 59.195 52.381 0.00 0.00 0.00 4.20
1640 1664 2.489971 GAACCAGTCAACCAATCGACA 58.510 47.619 0.00 0.00 34.48 4.35
1656 1680 1.676006 CGACAAGCCTTCTGTTTGGTT 59.324 47.619 0.00 0.00 0.00 3.67
1657 1681 2.875933 CGACAAGCCTTCTGTTTGGTTA 59.124 45.455 0.00 0.00 0.00 2.85
1658 1682 3.502211 CGACAAGCCTTCTGTTTGGTTAT 59.498 43.478 0.00 0.00 0.00 1.89
1659 1683 4.023193 CGACAAGCCTTCTGTTTGGTTATT 60.023 41.667 0.00 0.00 0.00 1.40
1670 1694 9.651718 CTTCTGTTTGGTTATTAAATATCTCGC 57.348 33.333 0.00 0.00 0.00 5.03
1694 1801 6.052360 CCTGCTTCTCTTAATTACCTTCCTC 58.948 44.000 0.00 0.00 0.00 3.71
1763 1889 1.135094 AGGATCCTGGTATGCAGGTG 58.865 55.000 15.29 0.00 40.59 4.00
1806 1932 3.064545 CCACTGCATCTTAGTAGCTTTGC 59.935 47.826 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
372 373 9.213777 TCATTATTTATCCTAAGTGTCACTCCT 57.786 33.333 5.82 0.00 0.00 3.69
373 374 9.482627 CTCATTATTTATCCTAAGTGTCACTCC 57.517 37.037 5.82 0.00 0.00 3.85
374 375 9.482627 CCTCATTATTTATCCTAAGTGTCACTC 57.517 37.037 5.82 0.00 0.00 3.51
375 376 8.993424 ACCTCATTATTTATCCTAAGTGTCACT 58.007 33.333 0.00 0.00 0.00 3.41
376 377 9.046296 CACCTCATTATTTATCCTAAGTGTCAC 57.954 37.037 0.00 0.00 0.00 3.67
377 378 8.988060 TCACCTCATTATTTATCCTAAGTGTCA 58.012 33.333 0.00 0.00 0.00 3.58
378 379 9.832445 TTCACCTCATTATTTATCCTAAGTGTC 57.168 33.333 0.00 0.00 0.00 3.67
379 380 9.838339 CTTCACCTCATTATTTATCCTAAGTGT 57.162 33.333 0.00 0.00 0.00 3.55
380 381 9.277783 CCTTCACCTCATTATTTATCCTAAGTG 57.722 37.037 0.00 0.00 0.00 3.16
381 382 9.225682 TCCTTCACCTCATTATTTATCCTAAGT 57.774 33.333 0.00 0.00 0.00 2.24
382 383 9.717942 CTCCTTCACCTCATTATTTATCCTAAG 57.282 37.037 0.00 0.00 0.00 2.18
383 384 9.447279 TCTCCTTCACCTCATTATTTATCCTAA 57.553 33.333 0.00 0.00 0.00 2.69
384 385 9.094578 CTCTCCTTCACCTCATTATTTATCCTA 57.905 37.037 0.00 0.00 0.00 2.94
385 386 7.791766 TCTCTCCTTCACCTCATTATTTATCCT 59.208 37.037 0.00 0.00 0.00 3.24
386 387 7.967908 TCTCTCCTTCACCTCATTATTTATCC 58.032 38.462 0.00 0.00 0.00 2.59
387 388 8.865090 TCTCTCTCCTTCACCTCATTATTTATC 58.135 37.037 0.00 0.00 0.00 1.75
388 389 8.789767 TCTCTCTCCTTCACCTCATTATTTAT 57.210 34.615 0.00 0.00 0.00 1.40
389 390 8.478877 GTTCTCTCTCCTTCACCTCATTATTTA 58.521 37.037 0.00 0.00 0.00 1.40
390 391 7.181845 AGTTCTCTCTCCTTCACCTCATTATTT 59.818 37.037 0.00 0.00 0.00 1.40
391 392 6.671779 AGTTCTCTCTCCTTCACCTCATTATT 59.328 38.462 0.00 0.00 0.00 1.40
392 393 6.201591 AGTTCTCTCTCCTTCACCTCATTAT 58.798 40.000 0.00 0.00 0.00 1.28
393 394 5.584913 AGTTCTCTCTCCTTCACCTCATTA 58.415 41.667 0.00 0.00 0.00 1.90
394 395 4.424842 AGTTCTCTCTCCTTCACCTCATT 58.575 43.478 0.00 0.00 0.00 2.57
395 396 4.023291 GAGTTCTCTCTCCTTCACCTCAT 58.977 47.826 0.00 0.00 37.68 2.90
396 397 3.181428 TGAGTTCTCTCTCCTTCACCTCA 60.181 47.826 1.53 0.00 40.98 3.86
397 398 3.426615 TGAGTTCTCTCTCCTTCACCTC 58.573 50.000 1.53 0.00 40.98 3.85
398 399 3.534357 TGAGTTCTCTCTCCTTCACCT 57.466 47.619 1.53 0.00 40.98 4.00
399 400 5.654650 TCTTATGAGTTCTCTCTCCTTCACC 59.345 44.000 1.53 0.00 40.98 4.02
400 401 6.767524 TCTTATGAGTTCTCTCTCCTTCAC 57.232 41.667 1.53 0.00 40.98 3.18
401 402 7.782897 TTTCTTATGAGTTCTCTCTCCTTCA 57.217 36.000 1.53 0.00 40.98 3.02
402 403 7.763985 CCTTTTCTTATGAGTTCTCTCTCCTTC 59.236 40.741 1.53 0.00 40.98 3.46
403 404 7.619965 CCTTTTCTTATGAGTTCTCTCTCCTT 58.380 38.462 1.53 0.00 40.98 3.36
404 405 6.351796 GCCTTTTCTTATGAGTTCTCTCTCCT 60.352 42.308 1.53 0.00 40.98 3.69
405 406 5.815222 GCCTTTTCTTATGAGTTCTCTCTCC 59.185 44.000 1.53 0.00 40.98 3.71
406 407 6.639563 AGCCTTTTCTTATGAGTTCTCTCTC 58.360 40.000 1.53 0.00 40.98 3.20
407 408 6.619329 AGCCTTTTCTTATGAGTTCTCTCT 57.381 37.500 1.53 0.00 40.98 3.10
408 409 6.652900 ACAAGCCTTTTCTTATGAGTTCTCTC 59.347 38.462 1.53 0.00 40.79 3.20
409 410 6.538263 ACAAGCCTTTTCTTATGAGTTCTCT 58.462 36.000 1.53 0.00 0.00 3.10
410 411 6.652900 AGACAAGCCTTTTCTTATGAGTTCTC 59.347 38.462 0.00 0.00 0.00 2.87
411 412 6.538263 AGACAAGCCTTTTCTTATGAGTTCT 58.462 36.000 0.00 0.00 0.00 3.01
412 413 6.809630 AGACAAGCCTTTTCTTATGAGTTC 57.190 37.500 0.00 0.00 0.00 3.01
413 414 7.001073 AGAAGACAAGCCTTTTCTTATGAGTT 58.999 34.615 5.86 0.00 29.54 3.01
414 415 6.538263 AGAAGACAAGCCTTTTCTTATGAGT 58.462 36.000 5.86 0.00 29.54 3.41
415 416 6.878389 AGAGAAGACAAGCCTTTTCTTATGAG 59.122 38.462 5.29 0.00 35.01 2.90
416 417 6.773638 AGAGAAGACAAGCCTTTTCTTATGA 58.226 36.000 5.29 0.00 35.01 2.15
417 418 7.446001 AAGAGAAGACAAGCCTTTTCTTATG 57.554 36.000 5.29 0.00 42.29 1.90
419 420 9.574516 AAATAAGAGAAGACAAGCCTTTTCTTA 57.425 29.630 5.86 14.67 45.53 2.10
420 421 8.470657 AAATAAGAGAAGACAAGCCTTTTCTT 57.529 30.769 5.57 5.57 44.56 2.52
421 422 9.574516 TTAAATAAGAGAAGACAAGCCTTTTCT 57.425 29.630 0.00 0.00 38.69 2.52
422 423 9.833182 CTTAAATAAGAGAAGACAAGCCTTTTC 57.167 33.333 0.00 0.00 35.33 2.29
423 424 9.574516 TCTTAAATAAGAGAAGACAAGCCTTTT 57.425 29.630 0.00 0.00 37.40 2.27
462 463 9.762933 GCTAAAAGATCATCTCTTGTCTTATCT 57.237 33.333 0.00 0.00 43.60 1.98
463 464 9.539825 TGCTAAAAGATCATCTCTTGTCTTATC 57.460 33.333 0.00 0.00 43.60 1.75
464 465 9.323985 GTGCTAAAAGATCATCTCTTGTCTTAT 57.676 33.333 0.00 0.00 43.60 1.73
465 466 7.489435 CGTGCTAAAAGATCATCTCTTGTCTTA 59.511 37.037 0.00 0.00 43.60 2.10
466 467 6.312426 CGTGCTAAAAGATCATCTCTTGTCTT 59.688 38.462 0.00 0.00 43.60 3.01
467 468 5.809562 CGTGCTAAAAGATCATCTCTTGTCT 59.190 40.000 0.00 0.00 43.60 3.41
468 469 5.807520 TCGTGCTAAAAGATCATCTCTTGTC 59.192 40.000 0.00 0.00 43.60 3.18
469 470 5.724328 TCGTGCTAAAAGATCATCTCTTGT 58.276 37.500 0.00 0.00 43.60 3.16
470 471 6.257411 ACATCGTGCTAAAAGATCATCTCTTG 59.743 38.462 0.00 0.00 43.60 3.02
471 472 6.344500 ACATCGTGCTAAAAGATCATCTCTT 58.656 36.000 0.00 0.00 46.44 2.85
472 473 5.911752 ACATCGTGCTAAAAGATCATCTCT 58.088 37.500 0.00 0.00 34.96 3.10
473 474 7.812191 AGATACATCGTGCTAAAAGATCATCTC 59.188 37.037 0.00 0.00 27.98 2.75
474 475 7.665690 AGATACATCGTGCTAAAAGATCATCT 58.334 34.615 0.00 0.00 0.00 2.90
475 476 7.881643 AGATACATCGTGCTAAAAGATCATC 57.118 36.000 0.00 0.00 0.00 2.92
476 477 9.197694 GTAAGATACATCGTGCTAAAAGATCAT 57.802 33.333 0.00 0.00 0.00 2.45
477 478 8.414003 AGTAAGATACATCGTGCTAAAAGATCA 58.586 33.333 0.00 0.00 30.64 2.92
478 479 8.804688 AGTAAGATACATCGTGCTAAAAGATC 57.195 34.615 0.00 0.00 30.64 2.75
479 480 8.414003 TGAGTAAGATACATCGTGCTAAAAGAT 58.586 33.333 0.00 0.00 32.30 2.40
480 481 7.701078 GTGAGTAAGATACATCGTGCTAAAAGA 59.299 37.037 0.00 0.00 32.30 2.52
481 482 7.043325 GGTGAGTAAGATACATCGTGCTAAAAG 60.043 40.741 0.00 0.00 32.30 2.27
482 483 6.755141 GGTGAGTAAGATACATCGTGCTAAAA 59.245 38.462 0.00 0.00 32.30 1.52
483 484 6.127563 TGGTGAGTAAGATACATCGTGCTAAA 60.128 38.462 0.00 0.00 32.30 1.85
484 485 5.358725 TGGTGAGTAAGATACATCGTGCTAA 59.641 40.000 0.00 0.00 32.30 3.09
485 486 4.885325 TGGTGAGTAAGATACATCGTGCTA 59.115 41.667 0.00 0.00 32.30 3.49
486 487 3.699538 TGGTGAGTAAGATACATCGTGCT 59.300 43.478 0.00 0.00 34.45 4.40
487 488 3.797256 GTGGTGAGTAAGATACATCGTGC 59.203 47.826 0.00 0.00 0.00 5.34
488 489 4.035684 CGTGGTGAGTAAGATACATCGTG 58.964 47.826 0.00 0.00 0.00 4.35
489 490 3.693085 ACGTGGTGAGTAAGATACATCGT 59.307 43.478 0.00 0.00 0.00 3.73
490 491 4.288670 ACGTGGTGAGTAAGATACATCG 57.711 45.455 0.00 0.00 0.00 3.84
491 492 6.963049 AAAACGTGGTGAGTAAGATACATC 57.037 37.500 0.00 0.00 0.00 3.06
492 493 6.090358 CGAAAAACGTGGTGAGTAAGATACAT 59.910 38.462 0.00 0.00 37.22 2.29
493 494 5.403166 CGAAAAACGTGGTGAGTAAGATACA 59.597 40.000 0.00 0.00 37.22 2.29
494 495 5.630680 TCGAAAAACGTGGTGAGTAAGATAC 59.369 40.000 0.00 0.00 43.13 2.24
495 496 5.771469 TCGAAAAACGTGGTGAGTAAGATA 58.229 37.500 0.00 0.00 43.13 1.98
496 497 4.624015 TCGAAAAACGTGGTGAGTAAGAT 58.376 39.130 0.00 0.00 43.13 2.40
497 498 4.044336 TCGAAAAACGTGGTGAGTAAGA 57.956 40.909 0.00 0.00 43.13 2.10
498 499 4.782252 TTCGAAAAACGTGGTGAGTAAG 57.218 40.909 0.00 0.00 43.13 2.34
499 500 5.738118 ATTTCGAAAAACGTGGTGAGTAA 57.262 34.783 15.66 0.00 43.13 2.24
500 501 5.503498 CAATTTCGAAAAACGTGGTGAGTA 58.497 37.500 15.66 0.00 43.13 2.59
501 502 4.347813 CAATTTCGAAAAACGTGGTGAGT 58.652 39.130 15.66 0.00 43.13 3.41
502 503 3.179599 GCAATTTCGAAAAACGTGGTGAG 59.820 43.478 15.66 0.00 43.13 3.51
503 504 3.109619 GCAATTTCGAAAAACGTGGTGA 58.890 40.909 15.66 0.00 43.13 4.02
504 505 3.112580 AGCAATTTCGAAAAACGTGGTG 58.887 40.909 15.66 5.91 43.13 4.17
505 506 3.430333 AGCAATTTCGAAAAACGTGGT 57.570 38.095 15.66 12.76 43.13 4.16
506 507 4.533222 ACTAGCAATTTCGAAAAACGTGG 58.467 39.130 15.66 7.11 43.13 4.94
507 508 7.775729 ATAACTAGCAATTTCGAAAAACGTG 57.224 32.000 15.66 11.48 43.13 4.49
508 509 8.071368 TCAATAACTAGCAATTTCGAAAAACGT 58.929 29.630 15.66 3.22 43.13 3.99
509 510 8.429739 TCAATAACTAGCAATTTCGAAAAACG 57.570 30.769 15.66 7.39 44.09 3.60
574 575 9.844790 CTTTTGCATGTAATCTAGAAATGACAA 57.155 29.630 0.00 5.51 0.00 3.18
575 576 9.013229 ACTTTTGCATGTAATCTAGAAATGACA 57.987 29.630 0.00 0.00 0.00 3.58
576 577 9.846248 AACTTTTGCATGTAATCTAGAAATGAC 57.154 29.630 0.00 0.00 0.00 3.06
613 614 9.448438 GGCATATGTACAATGGTTGATAAGATA 57.552 33.333 0.00 0.00 0.00 1.98
614 615 7.394359 GGGCATATGTACAATGGTTGATAAGAT 59.606 37.037 0.00 0.00 0.00 2.40
615 616 6.714810 GGGCATATGTACAATGGTTGATAAGA 59.285 38.462 0.00 0.00 0.00 2.10
616 617 6.716628 AGGGCATATGTACAATGGTTGATAAG 59.283 38.462 0.00 0.00 0.00 1.73
617 618 6.609876 AGGGCATATGTACAATGGTTGATAA 58.390 36.000 0.00 0.00 0.00 1.75
618 619 6.199557 AGGGCATATGTACAATGGTTGATA 57.800 37.500 0.00 0.00 0.00 2.15
619 620 5.065613 AGGGCATATGTACAATGGTTGAT 57.934 39.130 0.00 0.00 0.00 2.57
620 621 4.518278 AGGGCATATGTACAATGGTTGA 57.482 40.909 0.00 0.00 0.00 3.18
621 622 6.489700 TCATTAGGGCATATGTACAATGGTTG 59.510 38.462 0.00 0.00 0.00 3.77
622 623 6.609876 TCATTAGGGCATATGTACAATGGTT 58.390 36.000 0.00 0.00 0.00 3.67
623 624 6.199557 TCATTAGGGCATATGTACAATGGT 57.800 37.500 0.00 0.00 0.00 3.55
624 625 7.114754 AGATCATTAGGGCATATGTACAATGG 58.885 38.462 0.00 0.00 0.00 3.16
625 626 8.456471 CAAGATCATTAGGGCATATGTACAATG 58.544 37.037 0.00 6.65 0.00 2.82
626 627 7.121759 GCAAGATCATTAGGGCATATGTACAAT 59.878 37.037 0.00 0.00 0.00 2.71
627 628 6.430925 GCAAGATCATTAGGGCATATGTACAA 59.569 38.462 0.00 0.00 0.00 2.41
628 629 5.939883 GCAAGATCATTAGGGCATATGTACA 59.060 40.000 4.29 0.00 0.00 2.90
629 630 5.063944 CGCAAGATCATTAGGGCATATGTAC 59.936 44.000 4.29 0.00 43.02 2.90
630 631 5.178061 CGCAAGATCATTAGGGCATATGTA 58.822 41.667 4.29 0.00 43.02 2.29
631 632 4.005650 CGCAAGATCATTAGGGCATATGT 58.994 43.478 4.29 0.00 43.02 2.29
632 633 3.181503 GCGCAAGATCATTAGGGCATATG 60.182 47.826 0.30 0.00 39.41 1.78
633 634 3.012518 GCGCAAGATCATTAGGGCATAT 58.987 45.455 0.30 0.00 39.41 1.78
634 635 2.224499 TGCGCAAGATCATTAGGGCATA 60.224 45.455 8.16 0.00 43.57 3.14
635 636 1.242076 GCGCAAGATCATTAGGGCAT 58.758 50.000 0.30 0.00 39.41 4.40
636 637 0.107263 TGCGCAAGATCATTAGGGCA 60.107 50.000 8.16 12.12 45.71 5.36
637 638 0.308993 GTGCGCAAGATCATTAGGGC 59.691 55.000 14.00 2.29 43.02 5.19
640 641 2.357954 CGTGTGCGCAAGATCATTAG 57.642 50.000 14.00 0.00 43.02 1.73
670 671 4.244425 CGGAGGAAGTATGTGATGGTAG 57.756 50.000 0.00 0.00 0.00 3.18
788 795 1.368268 TGGCTTTTCTTCCCTGGGGT 61.368 55.000 14.00 0.00 36.47 4.95
791 798 0.178964 TGGTGGCTTTTCTTCCCTGG 60.179 55.000 0.00 0.00 0.00 4.45
795 802 0.318699 GCGTTGGTGGCTTTTCTTCC 60.319 55.000 0.00 0.00 0.00 3.46
916 928 1.376942 TCGGGAGTGAGACGGAGAC 60.377 63.158 0.00 0.00 0.00 3.36
917 929 1.376942 GTCGGGAGTGAGACGGAGA 60.377 63.158 0.00 0.00 0.00 3.71
918 930 2.408241 GGTCGGGAGTGAGACGGAG 61.408 68.421 0.00 0.00 38.20 4.63
919 931 2.360852 GGTCGGGAGTGAGACGGA 60.361 66.667 0.00 0.00 38.20 4.69
920 932 3.450115 GGGTCGGGAGTGAGACGG 61.450 72.222 0.00 0.00 38.20 4.79
921 933 2.005960 GATGGGTCGGGAGTGAGACG 62.006 65.000 0.00 0.00 38.20 4.18
962 974 0.110147 CGTCGTCCTGTCTGTGTCTC 60.110 60.000 0.00 0.00 0.00 3.36
963 975 1.950007 CGTCGTCCTGTCTGTGTCT 59.050 57.895 0.00 0.00 0.00 3.41
964 976 1.729838 GCGTCGTCCTGTCTGTGTC 60.730 63.158 0.00 0.00 0.00 3.67
965 977 2.335369 GCGTCGTCCTGTCTGTGT 59.665 61.111 0.00 0.00 0.00 3.72
966 978 1.730902 CTGCGTCGTCCTGTCTGTG 60.731 63.158 0.00 0.00 0.00 3.66
967 979 2.645567 CTGCGTCGTCCTGTCTGT 59.354 61.111 0.00 0.00 0.00 3.41
985 997 3.506096 CATGGGCGTCTGCTGCAG 61.506 66.667 23.31 23.31 42.25 4.41
1009 1021 2.348998 CGCCTGCAAGAACCTCCT 59.651 61.111 0.00 0.00 34.07 3.69
1599 1620 2.356382 CCTCTGCTAGTCGTCTTGTAGG 59.644 54.545 8.78 3.33 32.46 3.18
1600 1621 3.271729 TCCTCTGCTAGTCGTCTTGTAG 58.728 50.000 3.45 3.45 32.72 2.74
1601 1622 3.345508 TCCTCTGCTAGTCGTCTTGTA 57.654 47.619 0.00 0.00 0.00 2.41
1602 1623 2.201921 TCCTCTGCTAGTCGTCTTGT 57.798 50.000 0.00 0.00 0.00 3.16
1603 1624 2.416162 GGTTCCTCTGCTAGTCGTCTTG 60.416 54.545 0.00 0.00 0.00 3.02
1656 1680 7.233389 AGAGAAGCAGGCGAGATATTTAATA 57.767 36.000 0.00 0.00 0.00 0.98
1657 1681 6.107901 AGAGAAGCAGGCGAGATATTTAAT 57.892 37.500 0.00 0.00 0.00 1.40
1658 1682 5.537300 AGAGAAGCAGGCGAGATATTTAA 57.463 39.130 0.00 0.00 0.00 1.52
1659 1683 5.537300 AAGAGAAGCAGGCGAGATATTTA 57.463 39.130 0.00 0.00 0.00 1.40
1670 1694 5.995446 AGGAAGGTAATTAAGAGAAGCAGG 58.005 41.667 0.00 0.00 0.00 4.85
1694 1801 7.095313 CCAGCTGCTACTGATGATTATAAACAG 60.095 40.741 8.66 6.28 40.25 3.16
1702 1809 3.920231 TTCCAGCTGCTACTGATGATT 57.080 42.857 8.66 0.00 40.25 2.57
1763 1889 0.112412 AACACCTTGATCACCACCCC 59.888 55.000 0.00 0.00 0.00 4.95
1833 1960 9.643735 CCTCTAAGTCTAATTACTCCTTAGGAA 57.356 37.037 1.41 0.00 36.71 3.36
1852 1979 2.610727 GCGCCTATAAGCACCCTCTAAG 60.611 54.545 0.00 0.00 0.00 2.18
1856 1983 1.301795 GGCGCCTATAAGCACCCTC 60.302 63.158 22.15 0.00 34.54 4.30
1887 2014 1.152922 TGGACCGGCCGAAAGTTTT 60.153 52.632 30.73 0.35 40.66 2.43
1960 2328 0.813210 GAAGAAGCTGGGGCGATCTG 60.813 60.000 0.00 0.00 44.37 2.90
1962 2330 0.107459 AAGAAGAAGCTGGGGCGATC 60.107 55.000 0.00 0.00 44.37 3.69
1964 2332 1.296715 GAAGAAGAAGCTGGGGCGA 59.703 57.895 0.00 0.00 44.37 5.54
1965 2333 1.746991 GGAAGAAGAAGCTGGGGCG 60.747 63.158 0.00 0.00 44.37 6.13
2236 4118 2.124983 AGCGAGCATCAATGGCGT 60.125 55.556 0.00 0.00 36.08 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.