Multiple sequence alignment - TraesCS2B01G477200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G477200 chr2B 100.000 5553 0 0 1 5553 674029160 674034712 0.000000e+00 10255.0
1 TraesCS2B01G477200 chr2B 100.000 2189 0 0 5865 8053 674035024 674037212 0.000000e+00 4043.0
2 TraesCS2B01G477200 chr2B 92.742 124 5 3 4769 4888 355879556 355879679 8.310000e-40 176.0
3 TraesCS2B01G477200 chr2A 94.729 3282 115 27 744 3981 703868740 703872007 0.000000e+00 5049.0
4 TraesCS2B01G477200 chr2A 93.223 1815 81 14 6230 8020 703874755 703876551 0.000000e+00 2632.0
5 TraesCS2B01G477200 chr2A 92.426 713 35 11 1 702 703868040 703868744 0.000000e+00 1000.0
6 TraesCS2B01G477200 chr2A 91.581 677 22 6 4879 5530 703872776 703873442 0.000000e+00 902.0
7 TraesCS2B01G477200 chr2A 93.502 554 24 6 4241 4785 703872227 703872777 0.000000e+00 813.0
8 TraesCS2B01G477200 chr2A 95.516 223 9 1 3943 4165 703872007 703872228 9.940000e-94 355.0
9 TraesCS2B01G477200 chr2A 93.989 183 8 2 6052 6234 703873993 703874172 2.860000e-69 274.0
10 TraesCS2B01G477200 chr2A 93.103 87 3 3 4164 4247 522505494 522505408 3.050000e-24 124.0
11 TraesCS2B01G477200 chr2A 87.156 109 11 3 5945 6051 703873910 703874017 3.950000e-23 121.0
12 TraesCS2B01G477200 chr2D 94.547 2824 105 23 744 3523 563786475 563789293 0.000000e+00 4316.0
13 TraesCS2B01G477200 chr2D 94.533 1811 65 13 6230 8012 563792545 563794349 0.000000e+00 2765.0
14 TraesCS2B01G477200 chr2D 96.774 651 15 4 3519 4165 563789352 563790000 0.000000e+00 1081.0
15 TraesCS2B01G477200 chr2D 91.911 717 32 11 1 700 563785771 563786478 0.000000e+00 979.0
16 TraesCS2B01G477200 chr2D 92.910 677 19 5 4879 5530 563790554 563791226 0.000000e+00 957.0
17 TraesCS2B01G477200 chr2D 91.786 560 28 7 4241 4785 563789999 563790555 0.000000e+00 763.0
18 TraesCS2B01G477200 chr2D 94.536 183 9 1 6052 6234 563791778 563791959 1.710000e-71 281.0
19 TraesCS2B01G477200 chr2D 91.534 189 15 1 5865 6052 563791278 563791466 8.020000e-65 259.0
20 TraesCS2B01G477200 chr2D 94.048 84 1 2 4164 4243 473096449 473096366 3.050000e-24 124.0
21 TraesCS2B01G477200 chr2D 85.047 107 13 3 5945 6049 563791695 563791800 1.110000e-18 106.0
22 TraesCS2B01G477200 chr2D 86.000 100 9 3 4148 4243 310223451 310223549 1.430000e-17 102.0
23 TraesCS2B01G477200 chr2D 100.000 31 0 0 8023 8053 563794377 563794407 3.140000e-04 58.4
24 TraesCS2B01G477200 chr3B 91.176 578 37 11 1838 2405 133770989 133771562 0.000000e+00 773.0
25 TraesCS2B01G477200 chr3B 91.429 525 33 5 3407 3926 133773267 133773784 0.000000e+00 710.0
26 TraesCS2B01G477200 chr3B 90.851 470 27 8 2958 3420 133772575 133773035 4.130000e-172 616.0
27 TraesCS2B01G477200 chr3B 90.476 210 17 1 2674 2880 133771711 133771920 2.860000e-69 274.0
28 TraesCS2B01G477200 chr3B 91.195 159 6 4 2477 2628 133771560 133771717 8.190000e-50 209.0
29 TraesCS2B01G477200 chr3B 85.475 179 15 6 5881 6052 133774082 133774256 8.310000e-40 176.0
30 TraesCS2B01G477200 chr3B 93.220 118 4 2 4775 4888 548551261 548551144 3.860000e-38 171.0
31 TraesCS2B01G477200 chr1B 98.058 103 2 0 4779 4881 14503820 14503718 6.420000e-41 180.0
32 TraesCS2B01G477200 chr1B 94.783 115 4 2 4774 4888 328139791 328139679 2.310000e-40 178.0
33 TraesCS2B01G477200 chr1B 91.667 84 4 1 4164 4247 39849972 39849892 6.610000e-21 113.0
34 TraesCS2B01G477200 chr7B 96.330 109 3 1 4781 4888 591048664 591048772 2.310000e-40 178.0
35 TraesCS2B01G477200 chr7B 95.495 111 3 2 4783 4892 372816665 372816556 8.310000e-40 176.0
36 TraesCS2B01G477200 chr7B 88.889 90 6 3 4157 4243 246514614 246514702 3.070000e-19 108.0
37 TraesCS2B01G477200 chr5B 97.143 105 3 0 4776 4880 671343389 671343285 2.310000e-40 178.0
38 TraesCS2B01G477200 chr5B 91.765 85 3 4 4164 4247 119407244 119407325 1.840000e-21 115.0
39 TraesCS2B01G477200 chr7D 93.103 116 6 2 4767 4881 386385337 386385223 1.390000e-37 169.0
40 TraesCS2B01G477200 chr4B 91.129 124 8 3 4761 4883 238242205 238242084 1.800000e-36 165.0
41 TraesCS2B01G477200 chr4B 91.566 83 5 2 4161 4242 613145850 613145931 6.610000e-21 113.0
42 TraesCS2B01G477200 chr4A 92.941 85 2 4 4164 4245 625758306 625758223 3.950000e-23 121.0
43 TraesCS2B01G477200 chr3D 90.588 85 4 4 4162 4245 536333249 536333168 8.540000e-20 110.0
44 TraesCS2B01G477200 chr5A 84.483 58 6 3 4854 4910 569863491 569863546 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G477200 chr2B 674029160 674037212 8052 False 7149.000000 10255 100.000000 1 8053 2 chr2B.!!$F2 8052
1 TraesCS2B01G477200 chr2A 703868040 703876551 8511 False 1393.250000 5049 92.765250 1 8020 8 chr2A.!!$F1 8019
2 TraesCS2B01G477200 chr2D 563785771 563794407 8636 False 1156.540000 4316 93.357800 1 8053 10 chr2D.!!$F2 8052
3 TraesCS2B01G477200 chr3B 133770989 133774256 3267 False 459.666667 773 90.100333 1838 6052 6 chr3B.!!$F1 4214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 540 0.319900 AGACGGCAGCTGTAGTTGTG 60.320 55.000 16.64 0.29 0.00 3.33 F
899 935 0.394565 ACTGACAAGTGAGACCAGCC 59.605 55.000 0.00 0.00 34.48 4.85 F
2288 2349 1.065401 ACCGATATGTTGCAATTGCGG 59.935 47.619 24.58 18.34 45.83 5.69 F
4127 5137 0.036022 GCTGTTCCAGAGCCAAGTCT 59.964 55.000 0.00 0.00 32.44 3.24 F
4179 5189 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12 F
4800 5829 0.410663 TCTACTCCCTCCGTCCCAAA 59.589 55.000 0.00 0.00 0.00 3.28 F
5219 6272 1.067060 GTGTTCCGCAAGAGCCTTTTT 59.933 47.619 0.00 0.00 43.02 1.94 F
6088 7622 1.337387 GTAGCCGACTCCAGTATGACC 59.663 57.143 0.00 0.00 39.69 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 2437 0.959553 GTGTCGGAACTGGAGTCTGA 59.040 55.000 0.00 0.00 0.00 3.27 R
2409 2471 1.133823 TGTTCCTGCAACCATGTGAGT 60.134 47.619 0.00 0.00 33.51 3.41 R
4227 5237 1.134491 CACAAATACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46 R
5476 6693 0.608308 ATCCGATCCGCGATACCAGA 60.608 55.000 8.23 0.00 44.57 3.86 R
6128 7662 0.886490 CTGACTTGGGCCATATCCGC 60.886 60.000 7.26 0.00 0.00 5.54 R
6315 8442 0.806241 TGTAGTGATGACGCAGCGTA 59.194 50.000 23.04 9.99 41.37 4.42 R
6996 9135 0.319297 GTTTCTAGCGTGTGGACCGT 60.319 55.000 0.00 0.00 0.00 4.83 R
8012 10177 1.134848 TGCATCTACGCAGCACATGTA 60.135 47.619 0.00 0.00 36.86 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 8.789762 AGCCTTTCTTCGCTAAACTAATAAAAA 58.210 29.630 0.00 0.00 32.26 1.94
249 251 2.388735 TCGGATATGTGCTGACCTCTT 58.611 47.619 0.00 0.00 0.00 2.85
304 310 9.626045 ATCATGTTTATCTTTCGAAAAAGGAAC 57.374 29.630 12.41 13.89 41.88 3.62
379 385 6.231951 TCTGTGTATTGTCATCGGGTTTTTA 58.768 36.000 0.00 0.00 0.00 1.52
422 431 7.706159 TGTATGCGCTTCTCAATATTTTGATT 58.294 30.769 9.73 0.00 40.95 2.57
431 440 9.784680 CTTCTCAATATTTTGATTGACTTCAGG 57.215 33.333 0.00 0.00 40.18 3.86
439 448 8.697507 ATTTTGATTGACTTCAGGTACTTTCT 57.302 30.769 0.00 0.00 34.60 2.52
489 498 4.730949 ATTTTGAACTCATGATGCTGGG 57.269 40.909 0.00 0.00 0.00 4.45
531 540 0.319900 AGACGGCAGCTGTAGTTGTG 60.320 55.000 16.64 0.29 0.00 3.33
534 543 3.267974 GCAGCTGTAGTTGTGCCC 58.732 61.111 16.64 0.00 0.00 5.36
558 574 4.126437 GGGTTTGTGTTGGAAAAAGGATG 58.874 43.478 0.00 0.00 0.00 3.51
681 699 7.865706 AAGTTAACATTCTGCCTATACTTGG 57.134 36.000 8.61 0.00 0.00 3.61
682 700 7.195374 AGTTAACATTCTGCCTATACTTGGA 57.805 36.000 8.61 0.00 0.00 3.53
683 701 7.806180 AGTTAACATTCTGCCTATACTTGGAT 58.194 34.615 8.61 0.00 0.00 3.41
684 702 7.934120 AGTTAACATTCTGCCTATACTTGGATC 59.066 37.037 8.61 0.00 0.00 3.36
685 703 5.894298 ACATTCTGCCTATACTTGGATCA 57.106 39.130 0.00 0.00 0.00 2.92
686 704 5.862845 ACATTCTGCCTATACTTGGATCAG 58.137 41.667 0.00 0.00 0.00 2.90
691 709 7.432148 TCTGCCTATACTTGGATCAGTTTTA 57.568 36.000 0.00 0.00 0.00 1.52
692 710 7.500992 TCTGCCTATACTTGGATCAGTTTTAG 58.499 38.462 0.00 0.00 0.00 1.85
694 712 7.630082 TGCCTATACTTGGATCAGTTTTAGTT 58.370 34.615 0.00 0.00 0.00 2.24
695 713 8.107095 TGCCTATACTTGGATCAGTTTTAGTTT 58.893 33.333 0.00 0.00 0.00 2.66
696 714 8.957466 GCCTATACTTGGATCAGTTTTAGTTTT 58.043 33.333 0.00 0.00 0.00 2.43
721 739 8.584063 TTTTTAGGACAAGAACCAGTTTTAGT 57.416 30.769 0.00 0.00 0.00 2.24
722 740 8.584063 TTTTAGGACAAGAACCAGTTTTAGTT 57.416 30.769 0.00 0.00 0.00 2.24
723 741 8.584063 TTTAGGACAAGAACCAGTTTTAGTTT 57.416 30.769 0.00 0.00 0.00 2.66
724 742 8.584063 TTAGGACAAGAACCAGTTTTAGTTTT 57.416 30.769 0.00 0.00 0.00 2.43
725 743 7.476540 AGGACAAGAACCAGTTTTAGTTTTT 57.523 32.000 0.00 0.00 0.00 1.94
837 855 0.600557 CACGGGCCATACAGCAAAAA 59.399 50.000 4.39 0.00 0.00 1.94
899 935 0.394565 ACTGACAAGTGAGACCAGCC 59.605 55.000 0.00 0.00 34.48 4.85
909 945 1.835927 GAGACCAGCCTGCCAGTCTT 61.836 60.000 11.56 0.00 39.62 3.01
1284 1334 3.071206 ACAGGAGGTGCGAGCGAT 61.071 61.111 0.00 0.00 0.00 4.58
1446 1497 2.405805 CGGCGATGGTGAATTGGCA 61.406 57.895 0.00 0.00 43.98 4.92
1459 1511 7.172342 TGGTGAATTGGCAAAGTTAGTATACT 58.828 34.615 10.87 10.87 0.00 2.12
1478 1530 2.089980 CTCCTTTGTTCATGGCAGGAG 58.910 52.381 0.83 1.15 43.65 3.69
1617 1669 1.079819 TGCAGCCAGAAGTAGCGTC 60.080 57.895 0.00 0.00 0.00 5.19
1637 1689 4.800993 CGTCTAGTGTCTGCTCTTTTATGG 59.199 45.833 0.00 0.00 0.00 2.74
1673 1725 4.200838 TCAGGTTCATGCTACGAATTCA 57.799 40.909 6.22 0.00 0.00 2.57
1745 1797 1.539827 GTTTGGTATGTGGTGACTGGC 59.460 52.381 0.00 0.00 0.00 4.85
1823 1875 6.084326 TGTTTCCCTAAGAACTTCAATTGC 57.916 37.500 0.00 0.00 32.95 3.56
1910 1964 7.444792 TGCAATGCACTTATTTTTCTCCAATTT 59.555 29.630 2.72 0.00 31.71 1.82
2016 2070 2.287308 TGCGTAGTTTGATTTGCCACAC 60.287 45.455 0.00 0.00 0.00 3.82
2029 2083 1.965643 TGCCACACGTAACTTCCTACT 59.034 47.619 0.00 0.00 0.00 2.57
2118 2172 3.491104 GGGCTGAAGACAGGTATACTTCG 60.491 52.174 2.25 0.00 43.62 3.79
2131 2185 5.587443 AGGTATACTTCGGGTTTTTATGCAC 59.413 40.000 2.25 0.00 0.00 4.57
2192 2246 3.271729 TGCAACTTCGTGAACCAACTAA 58.728 40.909 0.00 0.00 0.00 2.24
2261 2315 7.484035 CCTTAAGGTCTAAACACATGCTATC 57.516 40.000 13.83 0.00 0.00 2.08
2288 2349 1.065401 ACCGATATGTTGCAATTGCGG 59.935 47.619 24.58 18.34 45.83 5.69
2390 2452 2.526304 TGTTTCAGACTCCAGTTCCG 57.474 50.000 0.00 0.00 0.00 4.30
2408 2470 5.657302 AGTTCCGACACCTTGATTATAGACT 59.343 40.000 0.00 0.00 0.00 3.24
2409 2471 6.832384 AGTTCCGACACCTTGATTATAGACTA 59.168 38.462 0.00 0.00 0.00 2.59
2434 2496 4.881273 TCACATGGTTGCAGGAACATATAC 59.119 41.667 7.16 0.00 36.12 1.47
2498 2561 9.325198 AGTGATACGATTTAGCATTAATGTTGA 57.675 29.630 16.61 5.01 0.00 3.18
2637 2705 5.545658 AGCGATTGTTTGTAGTATGTTGG 57.454 39.130 0.00 0.00 0.00 3.77
2647 2715 7.774157 TGTTTGTAGTATGTTGGTACCTTCAAA 59.226 33.333 14.36 4.78 0.00 2.69
2682 2750 8.149973 TCGAACAGCTATTTTAGTTCTGTTTT 57.850 30.769 9.77 0.00 44.89 2.43
2719 2787 3.141398 TCTTGCTTTAACAGGAGTGCTG 58.859 45.455 10.51 10.51 0.00 4.41
2763 2834 0.453793 TTTTGGTGCATATTCCCGCG 59.546 50.000 0.00 0.00 0.00 6.46
2976 3624 7.277981 AGTTCACTTGCCTCTTATGTATTTACG 59.722 37.037 0.00 0.00 0.00 3.18
3076 3726 5.187967 CCTCTGAGGTACTTCCATACACTTT 59.812 44.000 15.76 0.00 41.55 2.66
3095 3745 8.165239 ACACTTTATGAAGTAAAATGCACTCA 57.835 30.769 2.09 0.00 44.14 3.41
3119 3769 9.120538 TCACAAGTTTCTAGTGATTAAGCTTTT 57.879 29.630 3.20 0.00 37.36 2.27
3161 3813 3.680937 TGCTACGCGTATAAGCAAAAAGT 59.319 39.130 27.78 2.88 42.96 2.66
3258 3910 9.095065 GGTAAAGCTATCTTTCGTTATTCTCAA 57.905 33.333 0.00 0.00 41.34 3.02
3301 3953 8.450578 TTTCTCAATTGCTTCTTCTTGAACTA 57.549 30.769 0.00 0.00 0.00 2.24
3312 3964 9.539825 GCTTCTTCTTGAACTATCTATGAATGA 57.460 33.333 0.00 0.00 0.00 2.57
3349 4001 9.167311 TGCACCTTAATTTACAAATTGTTGTTT 57.833 25.926 3.17 0.00 46.01 2.83
3458 4360 4.532521 AGAACTGTGTAGCCACTTAGGATT 59.467 41.667 0.00 0.00 42.34 3.01
3707 4678 6.823182 TGTGGTATCTCACACCTTCATAATTG 59.177 38.462 0.00 0.00 42.05 2.32
3969 4979 8.696043 TGAATGAATATTGCCATACTTTAGCT 57.304 30.769 0.00 0.00 0.00 3.32
4064 5074 7.691877 TCACGTTAACATTTTCATTCATGATCG 59.308 33.333 6.39 0.00 36.56 3.69
4068 5078 9.988350 GTTAACATTTTCATTCATGATCGTACT 57.012 29.630 0.00 0.00 36.56 2.73
4094 5104 1.089920 GTCTAGCCATGCACACCTTG 58.910 55.000 0.00 0.00 0.00 3.61
4127 5137 0.036022 GCTGTTCCAGAGCCAAGTCT 59.964 55.000 0.00 0.00 32.44 3.24
4139 5149 1.200948 GCCAAGTCTAGCAAAGCCAAG 59.799 52.381 0.00 0.00 0.00 3.61
4143 5153 4.202151 CCAAGTCTAGCAAAGCCAAGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
4148 5158 5.685954 GTCTAGCAAAGCCAAGTTTTGTTAC 59.314 40.000 5.92 0.00 36.41 2.50
4165 5175 9.595357 GTTTTGTTACTTCTGCTTATCAACTAC 57.405 33.333 0.00 0.00 0.00 2.73
4166 5176 9.555727 TTTTGTTACTTCTGCTTATCAACTACT 57.444 29.630 0.00 0.00 0.00 2.57
4167 5177 8.758633 TTGTTACTTCTGCTTATCAACTACTC 57.241 34.615 0.00 0.00 0.00 2.59
4168 5178 7.321153 TGTTACTTCTGCTTATCAACTACTCC 58.679 38.462 0.00 0.00 0.00 3.85
4169 5179 5.346181 ACTTCTGCTTATCAACTACTCCC 57.654 43.478 0.00 0.00 0.00 4.30
4170 5180 5.026790 ACTTCTGCTTATCAACTACTCCCT 58.973 41.667 0.00 0.00 0.00 4.20
4171 5181 5.128008 ACTTCTGCTTATCAACTACTCCCTC 59.872 44.000 0.00 0.00 0.00 4.30
4172 5182 3.961408 TCTGCTTATCAACTACTCCCTCC 59.039 47.826 0.00 0.00 0.00 4.30
4173 5183 2.693591 TGCTTATCAACTACTCCCTCCG 59.306 50.000 0.00 0.00 0.00 4.63
4174 5184 2.694109 GCTTATCAACTACTCCCTCCGT 59.306 50.000 0.00 0.00 0.00 4.69
4175 5185 3.243468 GCTTATCAACTACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
4176 5186 1.777941 ATCAACTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
4177 5187 0.324091 TCAACTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
4178 5188 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
4179 5189 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
4180 5190 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4181 5191 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
4182 5192 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
4183 5193 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4184 5194 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4185 5195 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4186 5196 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4187 5197 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4188 5198 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4189 5199 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4190 5200 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4191 5201 4.081309 CCTCCGTCCCAAAATAAGTGTCTA 60.081 45.833 0.00 0.00 0.00 2.59
4192 5202 5.484715 CTCCGTCCCAAAATAAGTGTCTAA 58.515 41.667 0.00 0.00 0.00 2.10
4193 5203 5.484715 TCCGTCCCAAAATAAGTGTCTAAG 58.515 41.667 0.00 0.00 0.00 2.18
4194 5204 5.012354 TCCGTCCCAAAATAAGTGTCTAAGT 59.988 40.000 0.00 0.00 0.00 2.24
4195 5205 5.704053 CCGTCCCAAAATAAGTGTCTAAGTT 59.296 40.000 0.00 0.00 0.00 2.66
4196 5206 6.875195 CCGTCCCAAAATAAGTGTCTAAGTTA 59.125 38.462 0.00 0.00 0.00 2.24
4197 5207 7.388500 CCGTCCCAAAATAAGTGTCTAAGTTAA 59.612 37.037 0.00 0.00 0.00 2.01
4198 5208 8.776470 CGTCCCAAAATAAGTGTCTAAGTTAAA 58.224 33.333 0.00 0.00 0.00 1.52
4200 5210 9.856162 TCCCAAAATAAGTGTCTAAGTTAAAGT 57.144 29.630 0.00 0.00 0.00 2.66
4230 5240 9.362151 ACTAAATTTGAGACACTTATTTTGGGA 57.638 29.630 0.00 0.00 0.00 4.37
4231 5241 9.626045 CTAAATTTGAGACACTTATTTTGGGAC 57.374 33.333 0.00 0.00 0.00 4.46
4232 5242 5.682943 TTTGAGACACTTATTTTGGGACG 57.317 39.130 0.00 0.00 0.00 4.79
4233 5243 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
4234 5244 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
4235 5245 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4236 5246 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4237 5247 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4238 5248 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4239 5249 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4240 5250 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4241 5251 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4247 5257 1.134491 GGGACGGAGGGAGTATTTGTG 60.134 57.143 0.00 0.00 0.00 3.33
4248 5258 1.829222 GGACGGAGGGAGTATTTGTGA 59.171 52.381 0.00 0.00 0.00 3.58
4319 5329 3.315191 ACGACAAGTTTAGCATGCTGTTT 59.685 39.130 30.42 14.96 0.00 2.83
4323 5334 6.416455 CGACAAGTTTAGCATGCTGTTTAAAA 59.584 34.615 30.42 18.47 0.00 1.52
4372 5383 6.937436 AGACTTGTTACTTTGTTAGGTTGG 57.063 37.500 0.00 0.00 0.00 3.77
4374 5385 6.888088 AGACTTGTTACTTTGTTAGGTTGGTT 59.112 34.615 0.00 0.00 0.00 3.67
4375 5386 8.048514 AGACTTGTTACTTTGTTAGGTTGGTTA 58.951 33.333 0.00 0.00 0.00 2.85
4493 5519 8.872845 CATTTCTTTGTAACCCATCTATTTTGC 58.127 33.333 0.00 0.00 0.00 3.68
4588 5617 5.592282 TCCTTTAATCTTGTGCAAGTGACAA 59.408 36.000 11.17 0.00 39.38 3.18
4669 5698 6.367161 TGAATTATCAATCTTCCAGCCATGA 58.633 36.000 0.00 0.00 30.99 3.07
4675 5704 4.080186 TCAATCTTCCAGCCATGAATCTGA 60.080 41.667 0.00 0.00 32.26 3.27
4719 5748 4.041723 CAGGGATTGAACAAACAAACGTC 58.958 43.478 0.00 0.00 33.44 4.34
4770 5799 5.726980 TGCCAGATTGCAGTTTATTCTTT 57.273 34.783 0.00 0.00 36.04 2.52
4794 5823 7.427989 TTTTATTGTTATCTACTCCCTCCGT 57.572 36.000 0.00 0.00 0.00 4.69
4795 5824 6.645790 TTATTGTTATCTACTCCCTCCGTC 57.354 41.667 0.00 0.00 0.00 4.79
4796 5825 2.941480 TGTTATCTACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
4797 5826 2.237643 GTTATCTACTCCCTCCGTCCC 58.762 57.143 0.00 0.00 0.00 4.46
4798 5827 1.526315 TATCTACTCCCTCCGTCCCA 58.474 55.000 0.00 0.00 0.00 4.37
4799 5828 0.635009 ATCTACTCCCTCCGTCCCAA 59.365 55.000 0.00 0.00 0.00 4.12
4800 5829 0.410663 TCTACTCCCTCCGTCCCAAA 59.589 55.000 0.00 0.00 0.00 3.28
4801 5830 1.203212 TCTACTCCCTCCGTCCCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
4802 5831 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
4803 5832 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4804 5833 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4805 5834 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4806 5835 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4807 5836 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4808 5837 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4809 5838 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4810 5839 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4811 5840 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
4812 5841 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
4813 5842 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
4814 5843 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
4815 5844 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
4816 5845 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
4817 5846 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
4818 5847 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
4819 5848 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
4820 5849 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
4821 5850 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
4822 5851 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
4823 5852 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
4824 5853 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
4825 5854 8.764524 AATAAGTGTCTTGAGCTTAGTACAAG 57.235 34.615 5.89 5.89 41.27 3.16
4826 5855 5.793030 AGTGTCTTGAGCTTAGTACAAGT 57.207 39.130 10.81 0.00 40.89 3.16
4827 5856 6.163135 AGTGTCTTGAGCTTAGTACAAGTT 57.837 37.500 10.81 0.00 40.89 2.66
4828 5857 6.583562 AGTGTCTTGAGCTTAGTACAAGTTT 58.416 36.000 10.81 0.00 40.89 2.66
4829 5858 7.723324 AGTGTCTTGAGCTTAGTACAAGTTTA 58.277 34.615 10.81 0.00 40.89 2.01
4830 5859 8.368668 AGTGTCTTGAGCTTAGTACAAGTTTAT 58.631 33.333 10.81 0.00 40.89 1.40
4831 5860 9.635520 GTGTCTTGAGCTTAGTACAAGTTTATA 57.364 33.333 10.81 0.00 40.89 0.98
4832 5861 9.635520 TGTCTTGAGCTTAGTACAAGTTTATAC 57.364 33.333 10.81 3.92 40.89 1.47
4833 5862 9.857957 GTCTTGAGCTTAGTACAAGTTTATACT 57.142 33.333 10.81 2.84 40.89 2.12
4838 5867 9.667989 GAGCTTAGTACAAGTTTATACTAGAGC 57.332 37.037 17.65 17.65 37.74 4.09
4839 5868 9.411189 AGCTTAGTACAAGTTTATACTAGAGCT 57.589 33.333 19.65 19.65 39.80 4.09
4855 5884 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
4856 5885 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
4857 5886 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
4858 5887 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
4859 5888 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
4860 5889 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
4861 5890 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
4862 5891 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
4863 5892 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
4866 5895 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
4867 5896 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
4868 5897 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
4869 5898 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
4870 5899 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
4871 5900 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
4872 5901 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
4873 5902 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4874 5903 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4875 5904 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4876 5905 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4877 5906 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5120 6149 3.251972 GCTTGCTATAGCCTTTTAGCCTG 59.748 47.826 21.84 1.72 40.07 4.85
5127 6156 6.995091 GCTATAGCCTTTTAGCCTGCATATAT 59.005 38.462 14.13 0.00 35.80 0.86
5143 6172 7.337184 CCTGCATATATGAGCTCTTGATTGATT 59.663 37.037 17.10 0.00 0.00 2.57
5151 6180 4.649692 AGCTCTTGATTGATTCAGTGTGT 58.350 39.130 0.00 0.00 35.27 3.72
5152 6181 5.798132 AGCTCTTGATTGATTCAGTGTGTA 58.202 37.500 0.00 0.00 35.27 2.90
5184 6213 6.056090 TCTGTGCACCTAATAAACCATGTA 57.944 37.500 15.69 0.00 0.00 2.29
5219 6272 1.067060 GTGTTCCGCAAGAGCCTTTTT 59.933 47.619 0.00 0.00 43.02 1.94
5287 6340 5.559225 GCTTTCGTTTCTCTTTCAGGAAGTC 60.559 44.000 0.00 0.00 36.70 3.01
5437 6654 8.237267 TGTCTTCTCACTTCTTTTTCTTTCAAC 58.763 33.333 0.00 0.00 0.00 3.18
5438 6655 8.237267 GTCTTCTCACTTCTTTTTCTTTCAACA 58.763 33.333 0.00 0.00 0.00 3.33
5450 6667 5.657470 TTCTTTCAACACTCAATCTGTCG 57.343 39.130 0.00 0.00 0.00 4.35
5476 6693 1.952296 CAGAAGAGGCAAACAGCTGTT 59.048 47.619 26.36 26.36 44.79 3.16
5497 6714 1.676529 CTGGTATCGCGGATCGGATAT 59.323 52.381 6.13 0.00 39.05 1.63
5523 6740 6.811253 AAGTTTTATTATTGTGAGCCGTGA 57.189 33.333 0.00 0.00 0.00 4.35
5524 6741 6.422776 AGTTTTATTATTGTGAGCCGTGAG 57.577 37.500 0.00 0.00 0.00 3.51
5544 6761 4.619227 CTTCACGCGGGTGTGGGT 62.619 66.667 28.91 0.00 44.68 4.51
5550 6767 4.868116 GCGGGTGTGGGTGTGTGT 62.868 66.667 0.00 0.00 0.00 3.72
5552 6769 2.274104 GGGTGTGGGTGTGTGTGT 59.726 61.111 0.00 0.00 0.00 3.72
5909 7126 7.771361 TCCGGCTCAGTTTATCATGTAATTAAA 59.229 33.333 0.00 0.00 0.00 1.52
5924 7144 7.220741 TGTAATTAAACAAGTGCCATTGCTA 57.779 32.000 0.00 0.00 38.71 3.49
5992 7214 4.079672 TCAAAGGGAAAGTGTTACTTCCCA 60.080 41.667 18.97 0.65 42.71 4.37
5997 7219 4.403734 GGAAAGTGTTACTTCCCATTGGA 58.596 43.478 3.62 0.00 37.47 3.53
6016 7238 4.660168 TGGACTTCGGAGTAGAACTAACT 58.340 43.478 0.00 0.00 35.88 2.24
6021 7243 5.125739 ACTTCGGAGTAGAACTAACTGGATG 59.874 44.000 0.00 0.00 33.32 3.51
6033 7255 5.978814 ACTAACTGGATGTAGGACATTGAC 58.021 41.667 0.00 0.00 39.27 3.18
6088 7622 1.337387 GTAGCCGACTCCAGTATGACC 59.663 57.143 0.00 0.00 39.69 4.02
6114 7648 1.549243 TAGCACCATGGCCAAGTCGA 61.549 55.000 10.96 0.00 0.00 4.20
6152 7686 2.874648 TATGGCCCAAGTCAGCTGCG 62.875 60.000 9.47 0.00 0.00 5.18
6315 8442 6.660949 CAGGAAGTTCTTTGTGGGAAATAGAT 59.339 38.462 2.25 0.00 0.00 1.98
6324 8451 1.411246 TGGGAAATAGATACGCTGCGT 59.589 47.619 31.22 31.22 44.35 5.24
6363 8490 5.189180 GCAGTTTCAAGGTATCAGGAAGAT 58.811 41.667 0.00 0.00 40.86 2.40
6391 8528 3.140325 TCAATGGCGTCTCCTTTTTCT 57.860 42.857 0.00 0.00 35.26 2.52
6667 8804 7.286546 CACCTTCCACTAGATATTTCTCTCTGA 59.713 40.741 0.00 0.00 33.17 3.27
6967 9106 1.737793 CTTTGGGTGCCAGTCGAATAC 59.262 52.381 0.00 0.00 33.81 1.89
6994 9133 1.927838 GCAAGCTAGCGTAGAAGGAAC 59.072 52.381 9.55 0.00 0.00 3.62
6996 9135 3.181489 GCAAGCTAGCGTAGAAGGAACTA 60.181 47.826 9.55 0.00 38.49 2.24
7019 9158 0.038892 TCCACACGCTAGAAACCGTC 60.039 55.000 0.00 0.00 35.17 4.79
7087 9234 4.335416 CCAGACAGGGTGTAACATTTCAT 58.665 43.478 0.00 0.00 39.98 2.57
7116 9263 2.345341 GCAGTGTTTGCGGAAATATTGC 59.655 45.455 24.44 24.44 44.09 3.56
7199 9346 7.607991 AGTGAAGTATAAAACCATGTGAGGAAG 59.392 37.037 0.00 0.00 0.00 3.46
7372 9527 7.078851 GCGACGATATTCTCTTGAAGATTCTA 58.921 38.462 0.00 0.00 34.65 2.10
7499 9654 4.781934 ACTAAGATATTGGCAAGTCCACC 58.218 43.478 5.96 0.00 46.55 4.61
7507 9662 0.253044 GGCAAGTCCACCTCATGCTA 59.747 55.000 0.00 0.00 37.20 3.49
7515 9670 1.679944 CCACCTCATGCTACCAACAGG 60.680 57.143 0.00 0.00 32.57 4.00
7521 9676 4.161565 CCTCATGCTACCAACAGGTTAGTA 59.838 45.833 0.00 0.00 36.84 1.82
7548 9703 2.093181 AGCCCACATGAAATACAGCGTA 60.093 45.455 0.00 0.00 0.00 4.42
7568 9723 5.478407 CGTATTATGAGGTATGCCATGTGA 58.522 41.667 1.54 0.00 37.19 3.58
7569 9724 5.578336 CGTATTATGAGGTATGCCATGTGAG 59.422 44.000 1.54 0.00 37.19 3.51
7570 9725 2.945080 ATGAGGTATGCCATGTGAGG 57.055 50.000 1.54 0.00 37.19 3.86
7585 9740 1.045407 TGAGGACGGTGTAAACAGCT 58.955 50.000 10.28 0.00 41.81 4.24
7596 9751 6.182634 CGGTGTAAACAGCTACAAAATATCG 58.817 40.000 10.28 0.00 41.81 2.92
7597 9752 6.183360 CGGTGTAAACAGCTACAAAATATCGT 60.183 38.462 10.28 0.00 41.81 3.73
7598 9753 7.178074 GGTGTAAACAGCTACAAAATATCGTC 58.822 38.462 5.09 0.00 40.88 4.20
7603 9758 4.267928 ACAGCTACAAAATATCGTCTTCGC 59.732 41.667 0.00 0.00 36.96 4.70
7691 9847 3.093278 CGAATGAACGGAGGCTGC 58.907 61.111 0.00 0.00 0.00 5.25
7783 9939 3.045634 CCAACCCACATATCCTCAGGTA 58.954 50.000 0.00 0.00 0.00 3.08
7786 9942 1.978580 CCCACATATCCTCAGGTACCC 59.021 57.143 8.74 0.00 0.00 3.69
7873 10038 0.178944 TCTCTTGGGAACTCCGTCCA 60.179 55.000 0.00 0.00 39.70 4.02
7963 10128 0.464452 GGTACGCACATAAGCTCCCT 59.536 55.000 0.00 0.00 0.00 4.20
8012 10177 3.630312 GGGTACGTTGGCATCACATATTT 59.370 43.478 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 179 9.912634 ACATCAAATTGAAGTTGGTAAAGTATG 57.087 29.630 5.49 3.03 0.00 2.39
206 208 9.027129 CCGATTAACTACGACATCAAATTCTAA 57.973 33.333 0.00 0.00 0.00 2.10
224 226 4.632153 AGGTCAGCACATATCCGATTAAC 58.368 43.478 0.00 0.00 0.00 2.01
249 251 9.527157 TTCAAGGAAGTTATGTTTCATCCATAA 57.473 29.630 0.00 0.00 33.54 1.90
379 385 8.393366 GCGCATACATCATTTCATGTCTAATAT 58.607 33.333 0.30 0.00 38.07 1.28
394 400 6.866010 AAATATTGAGAAGCGCATACATCA 57.134 33.333 11.47 3.22 0.00 3.07
422 431 2.288825 CGCCAGAAAGTACCTGAAGTCA 60.289 50.000 0.00 0.00 33.65 3.41
431 440 0.606604 TGAGGGTCGCCAGAAAGTAC 59.393 55.000 0.00 0.00 0.00 2.73
437 446 1.377202 GCATTTGAGGGTCGCCAGA 60.377 57.895 0.00 0.00 0.00 3.86
439 448 1.675310 CTGCATTTGAGGGTCGCCA 60.675 57.895 0.00 0.00 0.00 5.69
489 498 8.071368 GTCTACTACTAACACTACTGATGATGC 58.929 40.741 0.00 0.00 0.00 3.91
531 540 3.611674 CCAACACAAACCCCGGGC 61.612 66.667 17.73 0.00 0.00 6.13
534 543 2.545731 CTTTTTCCAACACAAACCCCG 58.454 47.619 0.00 0.00 0.00 5.73
659 677 7.715249 TGATCCAAGTATAGGCAGAATGTTAAC 59.285 37.037 0.00 0.00 39.31 2.01
660 678 7.801104 TGATCCAAGTATAGGCAGAATGTTAA 58.199 34.615 0.00 0.00 39.31 2.01
661 679 7.071196 ACTGATCCAAGTATAGGCAGAATGTTA 59.929 37.037 0.00 0.00 39.31 2.41
662 680 6.126652 ACTGATCCAAGTATAGGCAGAATGTT 60.127 38.462 0.00 0.00 39.31 2.71
663 681 5.367937 ACTGATCCAAGTATAGGCAGAATGT 59.632 40.000 0.00 0.00 39.31 2.71
696 714 8.584063 ACTAAAACTGGTTCTTGTCCTAAAAA 57.416 30.769 0.00 0.00 0.00 1.94
697 715 8.584063 AACTAAAACTGGTTCTTGTCCTAAAA 57.416 30.769 0.00 0.00 0.00 1.52
698 716 8.584063 AAACTAAAACTGGTTCTTGTCCTAAA 57.416 30.769 0.00 0.00 0.00 1.85
699 717 8.584063 AAAACTAAAACTGGTTCTTGTCCTAA 57.416 30.769 0.00 0.00 0.00 2.69
700 718 8.584063 AAAAACTAAAACTGGTTCTTGTCCTA 57.416 30.769 0.00 0.00 0.00 2.94
701 719 7.476540 AAAAACTAAAACTGGTTCTTGTCCT 57.523 32.000 0.00 0.00 0.00 3.85
724 742 8.990163 ACTAAAACTGATCCTTGTCCTAAAAA 57.010 30.769 0.00 0.00 0.00 1.94
725 743 8.990163 AACTAAAACTGATCCTTGTCCTAAAA 57.010 30.769 0.00 0.00 0.00 1.52
726 744 8.990163 AAACTAAAACTGATCCTTGTCCTAAA 57.010 30.769 0.00 0.00 0.00 1.85
727 745 8.990163 AAAACTAAAACTGATCCTTGTCCTAA 57.010 30.769 0.00 0.00 0.00 2.69
728 746 8.990163 AAAAACTAAAACTGATCCTTGTCCTA 57.010 30.769 0.00 0.00 0.00 2.94
729 747 7.898014 AAAAACTAAAACTGATCCTTGTCCT 57.102 32.000 0.00 0.00 0.00 3.85
754 772 6.328148 TCTCTAAAACTGGTCCTTGTCCTAAA 59.672 38.462 0.00 0.00 0.00 1.85
756 774 5.399991 TCTCTAAAACTGGTCCTTGTCCTA 58.600 41.667 0.00 0.00 0.00 2.94
767 785 7.445402 TCTCCAACAATTTCTCTCTAAAACTGG 59.555 37.037 0.00 0.00 0.00 4.00
769 787 7.174080 GCTCTCCAACAATTTCTCTCTAAAACT 59.826 37.037 0.00 0.00 0.00 2.66
823 841 2.477863 CCTACGCTTTTTGCTGTATGGC 60.478 50.000 0.00 0.00 40.11 4.40
837 855 2.832201 GGACCTACCGCCTACGCT 60.832 66.667 0.00 0.00 38.22 5.07
852 870 0.391228 TACACAACAAGCTGAGCGGA 59.609 50.000 0.00 0.00 0.00 5.54
857 875 1.533625 GCCCATACACAACAAGCTGA 58.466 50.000 0.00 0.00 0.00 4.26
859 877 0.960364 CGGCCCATACACAACAAGCT 60.960 55.000 0.00 0.00 0.00 3.74
909 945 1.643286 TCTGGGGTTTATTGATGGGCA 59.357 47.619 0.00 0.00 0.00 5.36
1267 1317 3.071206 ATCGCTCGCACCTCCTGT 61.071 61.111 0.00 0.00 0.00 4.00
1284 1334 2.504274 AAACACGAGCTCGGGGTCA 61.504 57.895 38.96 0.00 44.99 4.02
1446 1497 9.449719 CCATGAACAAAGGAGTATACTAACTTT 57.550 33.333 20.90 20.90 35.19 2.66
1459 1511 1.272092 CCTCCTGCCATGAACAAAGGA 60.272 52.381 0.00 0.00 35.73 3.36
1617 1669 5.091261 ACCCATAAAAGAGCAGACACTAG 57.909 43.478 0.00 0.00 0.00 2.57
1637 1689 8.229811 GCATGAACCTGAAAATAATTTGAAACC 58.770 33.333 0.00 0.00 0.00 3.27
1673 1725 7.148120 CCAAGCAACTCTAGAACATCATCAATT 60.148 37.037 0.00 0.00 0.00 2.32
1710 1762 6.260936 ACATACCAAACATCAGCATACTTAGC 59.739 38.462 0.00 0.00 0.00 3.09
1745 1797 7.535258 CACAAGAAATAATTGAAAGAGTGGTCG 59.465 37.037 0.00 0.00 0.00 4.79
1823 1875 1.151668 GCAATACCGCCAGCTCTATG 58.848 55.000 0.00 0.00 0.00 2.23
2016 2070 7.542025 ACTTAACCACATAGTAGGAAGTTACG 58.458 38.462 0.00 0.00 0.00 3.18
2118 2172 7.527084 TTAAAATATGCGTGCATAAAAACCC 57.473 32.000 17.59 0.00 41.53 4.11
2131 2185 8.854979 TCAATGTTCAGGATTTAAAATATGCG 57.145 30.769 0.00 0.00 0.00 4.73
2192 2246 5.710099 ACGGAAATGTCCAACAATACAATCT 59.290 36.000 1.98 0.00 45.26 2.40
2261 2315 3.452755 TGCAACATATCGGTAGACAGG 57.547 47.619 0.00 0.00 0.00 4.00
2288 2349 3.144506 CATGATCAGTATTGGGTGAGCC 58.855 50.000 0.09 0.00 0.00 4.70
2375 2437 0.959553 GTGTCGGAACTGGAGTCTGA 59.040 55.000 0.00 0.00 0.00 3.27
2390 2452 7.997482 TGTGAGTAGTCTATAATCAAGGTGTC 58.003 38.462 0.00 0.00 0.00 3.67
2408 2470 2.105649 TGTTCCTGCAACCATGTGAGTA 59.894 45.455 0.00 0.00 33.51 2.59
2409 2471 1.133823 TGTTCCTGCAACCATGTGAGT 60.134 47.619 0.00 0.00 33.51 3.41
2434 2496 6.525628 GCATGATATGAGAACAACAAACACAG 59.474 38.462 0.00 0.00 0.00 3.66
2647 2715 9.612620 CTAAAATAGCTGTTCGAACTTCAAAAT 57.387 29.630 27.32 11.56 0.00 1.82
2682 2750 7.458409 AAAGCAAGAATGAGAAGAGCATAAA 57.542 32.000 0.00 0.00 0.00 1.40
2696 2764 4.217118 CAGCACTCCTGTTAAAGCAAGAAT 59.783 41.667 0.00 0.00 36.79 2.40
2719 2787 6.583912 ATTGTATACATTGCGTACACAGAC 57.416 37.500 6.36 0.00 38.68 3.51
2763 2834 9.764363 AACTTTGATTCCTTCTTAAAATCCAAC 57.236 29.630 0.00 0.00 0.00 3.77
2888 2960 3.513515 GGAGAGGCGGAGAAGATCATAAT 59.486 47.826 0.00 0.00 0.00 1.28
2894 2966 1.458588 GGGGAGAGGCGGAGAAGAT 60.459 63.158 0.00 0.00 0.00 2.40
2976 3624 9.871299 AACAAAAACACACTAACAAAAATGAAC 57.129 25.926 0.00 0.00 0.00 3.18
3076 3726 7.744087 ACTTGTGAGTGCATTTTACTTCATA 57.256 32.000 0.00 0.00 33.99 2.15
3090 3740 7.386299 AGCTTAATCACTAGAAACTTGTGAGTG 59.614 37.037 19.56 8.90 45.62 3.51
3094 3744 9.173939 CAAAAGCTTAATCACTAGAAACTTGTG 57.826 33.333 0.00 6.93 38.25 3.33
3095 3745 9.120538 TCAAAAGCTTAATCACTAGAAACTTGT 57.879 29.630 0.00 0.00 0.00 3.16
3119 3769 2.116983 GAGGAGCCCTGCAACACTCA 62.117 60.000 10.61 0.00 31.76 3.41
3161 3813 7.226325 CCATGCTTTGGTGAACTTCAATTTTAA 59.774 33.333 0.00 0.00 40.99 1.52
3320 3972 8.607459 CAACAATTTGTAAATTAAGGTGCAACA 58.393 29.630 3.64 0.00 35.86 3.33
3469 4371 7.467557 TCTTAACAACAACGGTAAACTACAG 57.532 36.000 0.00 0.00 0.00 2.74
3695 4665 8.017418 TCAACAGGAAAAACAATTATGAAGGT 57.983 30.769 0.00 0.00 0.00 3.50
3707 4678 7.759433 TCAAGAAATCACTTCAACAGGAAAAAC 59.241 33.333 0.00 0.00 36.40 2.43
3985 4995 5.068198 GTCCTTCGAAAACCCCTTTTAGTTT 59.932 40.000 0.00 0.00 37.80 2.66
4127 5137 5.845391 AGTAACAAAACTTGGCTTTGCTA 57.155 34.783 0.00 0.00 37.29 3.49
4139 5149 9.595357 GTAGTTGATAAGCAGAAGTAACAAAAC 57.405 33.333 0.00 0.00 0.00 2.43
4143 5153 7.321153 GGAGTAGTTGATAAGCAGAAGTAACA 58.679 38.462 0.00 0.00 0.00 2.41
4148 5158 5.452636 GGAGGGAGTAGTTGATAAGCAGAAG 60.453 48.000 0.00 0.00 0.00 2.85
4165 5175 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4166 5176 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4167 5177 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4168 5178 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4169 5179 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
4170 5180 5.012354 ACTTAGACACTTATTTTGGGACGGA 59.988 40.000 0.00 0.00 0.00 4.69
4171 5181 5.243207 ACTTAGACACTTATTTTGGGACGG 58.757 41.667 0.00 0.00 0.00 4.79
4172 5182 6.796705 AACTTAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
4174 5184 9.856162 ACTTTAACTTAGACACTTATTTTGGGA 57.144 29.630 0.00 0.00 0.00 4.37
4204 5214 9.362151 TCCCAAAATAAGTGTCTCAAATTTAGT 57.638 29.630 0.00 0.00 0.00 2.24
4205 5215 9.626045 GTCCCAAAATAAGTGTCTCAAATTTAG 57.374 33.333 0.00 0.00 0.00 1.85
4206 5216 8.293867 CGTCCCAAAATAAGTGTCTCAAATTTA 58.706 33.333 0.00 0.00 0.00 1.40
4207 5217 7.145323 CGTCCCAAAATAAGTGTCTCAAATTT 58.855 34.615 0.00 0.00 0.00 1.82
4208 5218 6.294508 CCGTCCCAAAATAAGTGTCTCAAATT 60.295 38.462 0.00 0.00 0.00 1.82
4209 5219 5.183140 CCGTCCCAAAATAAGTGTCTCAAAT 59.817 40.000 0.00 0.00 0.00 2.32
4210 5220 4.517453 CCGTCCCAAAATAAGTGTCTCAAA 59.483 41.667 0.00 0.00 0.00 2.69
4211 5221 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4212 5222 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4213 5223 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4214 5224 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4215 5225 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4216 5226 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4217 5227 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4218 5228 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4219 5229 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4220 5230 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4221 5231 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4222 5232 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4223 5233 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4224 5234 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
4225 5235 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
4226 5236 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
4227 5237 1.134491 CACAAATACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
4228 5238 1.829222 TCACAAATACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
4229 5239 2.738964 GCTCACAAATACTCCCTCCGTC 60.739 54.545 0.00 0.00 0.00 4.79
4230 5240 1.207329 GCTCACAAATACTCCCTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
4231 5241 1.802880 CGCTCACAAATACTCCCTCCG 60.803 57.143 0.00 0.00 0.00 4.63
4232 5242 1.473434 CCGCTCACAAATACTCCCTCC 60.473 57.143 0.00 0.00 0.00 4.30
4233 5243 1.480954 TCCGCTCACAAATACTCCCTC 59.519 52.381 0.00 0.00 0.00 4.30
4234 5244 1.568504 TCCGCTCACAAATACTCCCT 58.431 50.000 0.00 0.00 0.00 4.20
4235 5245 2.396590 TTCCGCTCACAAATACTCCC 57.603 50.000 0.00 0.00 0.00 4.30
4236 5246 2.032178 GCATTCCGCTCACAAATACTCC 59.968 50.000 0.00 0.00 37.77 3.85
4237 5247 3.325230 GCATTCCGCTCACAAATACTC 57.675 47.619 0.00 0.00 37.77 2.59
4372 5383 7.171678 GCAGACTACAGGATTCATGGTTATAAC 59.828 40.741 7.09 7.09 0.00 1.89
4374 5385 6.239600 GGCAGACTACAGGATTCATGGTTATA 60.240 42.308 3.09 0.00 0.00 0.98
4375 5386 5.455326 GGCAGACTACAGGATTCATGGTTAT 60.455 44.000 3.09 0.00 0.00 1.89
4394 5406 7.556275 CCTTAAGGTATATTCAAGTTTGGCAGA 59.444 37.037 13.83 0.00 0.00 4.26
4435 5453 5.514279 GCATCACATAGCCTCATTGTTTAC 58.486 41.667 0.00 0.00 0.00 2.01
4506 5532 2.441375 TGGACTTGTCTTCAATGGGTGA 59.559 45.455 0.61 0.00 32.82 4.02
4560 5586 7.119846 GTCACTTGCACAAGATTAAAGGAGTAT 59.880 37.037 16.95 0.00 40.79 2.12
4600 5629 2.597455 TCCGCTGATATGATCCACTCA 58.403 47.619 0.00 0.00 38.53 3.41
4699 5728 4.301637 AGACGTTTGTTTGTTCAATCCC 57.698 40.909 0.00 0.00 0.00 3.85
4737 5766 6.066690 ACTGCAATCTGGCATATTCATAAGT 58.933 36.000 0.00 0.00 43.97 2.24
4770 5799 7.418254 GGACGGAGGGAGTAGATAACAATAAAA 60.418 40.741 0.00 0.00 0.00 1.52
4783 5812 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4784 5813 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4785 5814 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
4786 5815 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4787 5816 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4788 5817 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4789 5818 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
4790 5819 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
4791 5820 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
4792 5821 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
4793 5822 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
4794 5823 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
4795 5824 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
4796 5825 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
4797 5826 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
4798 5827 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
4799 5828 9.209175 CTTGTACTAAGCTCAAGACACTTATTT 57.791 33.333 6.29 0.00 40.35 1.40
4800 5829 8.368668 ACTTGTACTAAGCTCAAGACACTTATT 58.631 33.333 16.54 0.00 40.35 1.40
4801 5830 7.897864 ACTTGTACTAAGCTCAAGACACTTAT 58.102 34.615 16.54 0.00 40.35 1.73
4802 5831 7.286215 ACTTGTACTAAGCTCAAGACACTTA 57.714 36.000 16.54 0.00 40.35 2.24
4803 5832 6.163135 ACTTGTACTAAGCTCAAGACACTT 57.837 37.500 16.54 0.00 40.35 3.16
4804 5833 5.793030 ACTTGTACTAAGCTCAAGACACT 57.207 39.130 16.54 0.00 40.35 3.55
4805 5834 6.846325 AAACTTGTACTAAGCTCAAGACAC 57.154 37.500 16.54 8.22 40.35 3.67
4806 5835 9.635520 GTATAAACTTGTACTAAGCTCAAGACA 57.364 33.333 16.54 3.68 40.35 3.41
4807 5836 9.857957 AGTATAAACTTGTACTAAGCTCAAGAC 57.142 33.333 16.54 6.10 40.35 3.01
4812 5841 9.667989 GCTCTAGTATAAACTTGTACTAAGCTC 57.332 37.037 19.18 6.32 37.06 4.09
4813 5842 9.411189 AGCTCTAGTATAAACTTGTACTAAGCT 57.589 33.333 21.05 21.05 40.86 3.74
4829 5858 8.895737 GTCTCAACTTTGTACTAGCTCTAGTAT 58.104 37.037 16.96 1.87 46.57 2.12
4830 5859 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
4832 5861 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
4833 5862 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
4834 5863 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
4835 5864 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
4836 5865 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
4837 5866 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
4840 5869 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
4841 5870 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
4842 5871 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
4843 5872 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
4844 5873 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
4845 5874 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
4846 5875 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
4847 5876 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
4848 5877 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
4849 5878 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4850 5879 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4851 5880 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4852 5881 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4853 5882 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4854 5883 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4855 5884 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4856 5885 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4857 5886 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4858 5887 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4859 5888 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4860 5889 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4861 5890 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4862 5891 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
4863 5892 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
4864 5893 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
4865 5894 5.482878 TCATAATAAATACTCCCTCCGTCCC 59.517 44.000 0.00 0.00 0.00 4.46
4866 5895 6.210984 AGTCATAATAAATACTCCCTCCGTCC 59.789 42.308 0.00 0.00 0.00 4.79
4867 5896 7.229581 AGTCATAATAAATACTCCCTCCGTC 57.770 40.000 0.00 0.00 0.00 4.79
4868 5897 7.613551 AAGTCATAATAAATACTCCCTCCGT 57.386 36.000 0.00 0.00 0.00 4.69
4869 5898 7.931948 ACAAAGTCATAATAAATACTCCCTCCG 59.068 37.037 0.00 0.00 0.00 4.63
4870 5899 9.057089 CACAAAGTCATAATAAATACTCCCTCC 57.943 37.037 0.00 0.00 0.00 4.30
4871 5900 9.614792 ACACAAAGTCATAATAAATACTCCCTC 57.385 33.333 0.00 0.00 0.00 4.30
4872 5901 9.975218 AACACAAAGTCATAATAAATACTCCCT 57.025 29.630 0.00 0.00 0.00 4.20
5120 6149 8.265165 TGAATCAATCAAGAGCTCATATATGC 57.735 34.615 17.77 0.00 34.30 3.14
5127 6156 4.694037 CACACTGAATCAATCAAGAGCTCA 59.306 41.667 17.77 0.00 37.67 4.26
5143 6172 8.515414 GTGCACAGAGATATATATACACACTGA 58.485 37.037 13.17 7.18 0.00 3.41
5184 6213 3.938963 CGGAACACAACATAGCTACCAAT 59.061 43.478 0.00 0.00 0.00 3.16
5219 6272 8.635877 AACAGCACAAAAATAATTACGAAACA 57.364 26.923 0.00 0.00 0.00 2.83
5240 6293 5.575957 CACTGCAATTAGCTTATGGAACAG 58.424 41.667 0.00 0.00 44.42 3.16
5287 6340 1.873069 GCTTCTCCATCATCCTGAGCG 60.873 57.143 0.00 0.00 0.00 5.03
5450 6667 3.187432 GCTGTTTGCCTCTTCTGTCTTAC 59.813 47.826 0.00 0.00 35.15 2.34
5476 6693 0.608308 ATCCGATCCGCGATACCAGA 60.608 55.000 8.23 0.00 44.57 3.86
5497 6714 8.784994 TCACGGCTCACAATAATAAAACTTTTA 58.215 29.630 0.00 0.00 0.00 1.52
5527 6744 4.619227 ACCCACACCCGCGTGAAG 62.619 66.667 7.31 0.00 43.14 3.02
5528 6745 4.920112 CACCCACACCCGCGTGAA 62.920 66.667 7.31 0.00 43.14 3.18
5533 6750 4.868116 ACACACACCCACACCCGC 62.868 66.667 0.00 0.00 0.00 6.13
5534 6751 2.899838 CACACACACCCACACCCG 60.900 66.667 0.00 0.00 0.00 5.28
5535 6752 2.274104 ACACACACACCCACACCC 59.726 61.111 0.00 0.00 0.00 4.61
5879 7096 4.100963 ACATGATAAACTGAGCCGGATACA 59.899 41.667 5.05 0.00 0.00 2.29
5909 7126 4.870123 TTTGAATAGCAATGGCACTTGT 57.130 36.364 0.00 0.00 44.61 3.16
5924 7144 8.812972 GGTTAGGGGTTTATCTTTCTTTTGAAT 58.187 33.333 0.00 0.00 38.37 2.57
5992 7214 5.715753 AGTTAGTTCTACTCCGAAGTCCAAT 59.284 40.000 0.00 0.00 36.92 3.16
5997 7219 4.660168 TCCAGTTAGTTCTACTCCGAAGT 58.340 43.478 0.00 0.00 39.66 3.01
6016 7238 4.649674 GGACTAGTCAATGTCCTACATCCA 59.350 45.833 23.91 0.00 46.65 3.41
6033 7255 1.816835 TGTTCGGCTACACAGGACTAG 59.183 52.381 0.00 0.00 0.00 2.57
6043 7265 3.130693 AGGACTAGTCAATGTTCGGCTAC 59.869 47.826 23.91 2.30 0.00 3.58
6114 7648 2.569218 ATCCGCCGGACTCAGGTAGT 62.569 60.000 8.62 0.00 42.80 2.73
6128 7662 0.886490 CTGACTTGGGCCATATCCGC 60.886 60.000 7.26 0.00 0.00 5.54
6141 7675 1.181741 TGGACTCTCGCAGCTGACTT 61.182 55.000 20.43 0.00 0.00 3.01
6315 8442 0.806241 TGTAGTGATGACGCAGCGTA 59.194 50.000 23.04 9.99 41.37 4.42
6324 8451 2.529632 ACTGCAGGAGTGTAGTGATGA 58.470 47.619 19.93 0.00 46.75 2.92
6363 8490 4.331968 AGGAGACGCCATTGAAATTGTTA 58.668 39.130 0.00 0.00 40.02 2.41
6367 8494 4.871933 AAAAGGAGACGCCATTGAAATT 57.128 36.364 0.00 0.00 40.02 1.82
6551 8688 0.973632 AATGTAGTCAGACGGGTGCA 59.026 50.000 0.00 0.00 0.00 4.57
6601 8738 7.173907 CCTCATCTTGGCAAACTATATAAGTGG 59.826 40.741 0.00 0.00 38.88 4.00
6619 8756 3.515901 GTGGTGAAGACCTACCTCATCTT 59.484 47.826 0.00 0.00 43.58 2.40
6667 8804 7.944729 AGACATGTTTTAGGCTGACATAAAT 57.055 32.000 0.00 3.21 33.03 1.40
6994 9133 0.806868 TTCTAGCGTGTGGACCGTAG 59.193 55.000 0.00 0.00 0.00 3.51
6996 9135 0.319297 GTTTCTAGCGTGTGGACCGT 60.319 55.000 0.00 0.00 0.00 4.83
7019 9158 1.667724 CTTTTAGCAGGTGAGGCATCG 59.332 52.381 0.00 0.00 0.00 3.84
7104 9251 2.099756 AGCTTTGAGGCAATATTTCCGC 59.900 45.455 1.00 1.00 34.17 5.54
7372 9527 4.704540 TGCATAAACCAATCCGTCTTCAAT 59.295 37.500 0.00 0.00 0.00 2.57
7515 9670 4.523083 TCATGTGGGCTCCAAATACTAAC 58.477 43.478 0.00 0.00 34.18 2.34
7521 9676 4.352009 TGTATTTCATGTGGGCTCCAAAT 58.648 39.130 0.00 0.00 34.18 2.32
7548 9703 4.598807 TCCTCACATGGCATACCTCATAAT 59.401 41.667 0.00 0.00 36.63 1.28
7568 9723 1.965643 TGTAGCTGTTTACACCGTCCT 59.034 47.619 0.00 0.00 0.00 3.85
7569 9724 2.443887 TGTAGCTGTTTACACCGTCC 57.556 50.000 0.00 0.00 0.00 4.79
7570 9725 4.799419 TTTTGTAGCTGTTTACACCGTC 57.201 40.909 0.00 0.00 33.50 4.79
7596 9751 3.553511 CAGATACAACATCAGGCGAAGAC 59.446 47.826 0.00 0.00 0.00 3.01
7597 9752 3.430790 CCAGATACAACATCAGGCGAAGA 60.431 47.826 0.00 0.00 0.00 2.87
7598 9753 2.868583 CCAGATACAACATCAGGCGAAG 59.131 50.000 0.00 0.00 0.00 3.79
7603 9758 4.130118 GTTAGGCCAGATACAACATCAGG 58.870 47.826 5.01 0.00 0.00 3.86
7691 9847 1.584380 GGAAAGGTCAGCAGCAGCAG 61.584 60.000 3.17 0.00 45.49 4.24
7717 9873 2.582052 GGCAATCCCGATCCACATTTA 58.418 47.619 0.00 0.00 0.00 1.40
7786 9942 3.551496 TTTGCAGTGGGAGAGGGCG 62.551 63.158 0.00 0.00 0.00 6.13
7939 10104 1.548719 AGCTTATGTGCGTACCTGTCA 59.451 47.619 0.00 0.00 38.13 3.58
7963 10128 1.239296 CGTCCCACACGTCCTCTGTA 61.239 60.000 0.00 0.00 44.07 2.74
8012 10177 1.134848 TGCATCTACGCAGCACATGTA 60.135 47.619 0.00 0.00 36.86 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.