Multiple sequence alignment - TraesCS2B01G476600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G476600 chr2B 100.000 3012 0 0 1 3012 673627362 673630373 0.000000e+00 5563.0
1 TraesCS2B01G476600 chr2B 89.086 678 47 10 1126 1799 673595336 673595990 0.000000e+00 817.0
2 TraesCS2B01G476600 chr2B 81.443 679 88 22 1139 1799 673241771 673242429 3.440000e-144 521.0
3 TraesCS2B01G476600 chr2B 87.162 444 34 8 704 1124 673594502 673594945 1.620000e-132 483.0
4 TraesCS2B01G476600 chr2B 79.616 677 94 25 1277 1918 673227616 673228283 2.130000e-121 446.0
5 TraesCS2B01G476600 chr2B 92.308 221 16 1 661 880 673705677 673705897 2.250000e-81 313.0
6 TraesCS2B01G476600 chr2B 86.937 222 29 0 2791 3012 90664013 90664234 1.790000e-62 250.0
7 TraesCS2B01G476600 chr2B 84.800 250 25 9 883 1124 673705944 673706188 3.880000e-59 239.0
8 TraesCS2B01G476600 chr2B 84.615 130 10 4 2189 2310 673243447 673243574 1.470000e-23 121.0
9 TraesCS2B01G476600 chr2B 90.909 55 5 0 1940 1994 180061726 180061672 1.160000e-09 75.0
10 TraesCS2B01G476600 chr2B 81.188 101 11 3 2181 2274 673233662 673233761 1.160000e-09 75.0
11 TraesCS2B01G476600 chr2A 85.841 1349 91 38 659 1940 703447559 703448874 0.000000e+00 1341.0
12 TraesCS2B01G476600 chr2A 80.924 671 83 23 1161 1799 703381867 703382524 3.490000e-134 488.0
13 TraesCS2B01G476600 chr2A 82.649 536 70 14 1284 1799 703402945 703403477 1.270000e-123 453.0
14 TraesCS2B01G476600 chr2A 84.440 482 49 14 659 1124 703544274 703544745 4.580000e-123 451.0
15 TraesCS2B01G476600 chr2A 82.239 518 64 19 1308 1799 703400237 703400752 3.590000e-114 422.0
16 TraesCS2B01G476600 chr2A 88.288 111 7 3 1833 1940 703403572 703403679 8.760000e-26 128.0
17 TraesCS2B01G476600 chr2A 77.119 118 13 5 2191 2307 703383525 703383629 4.190000e-04 56.5
18 TraesCS2B01G476600 chr5A 95.045 666 25 3 1 658 640352822 640352157 0.000000e+00 1040.0
19 TraesCS2B01G476600 chr5A 78.855 227 36 7 1940 2155 309942385 309942160 3.130000e-30 143.0
20 TraesCS2B01G476600 chr5B 94.586 665 27 4 1 657 339919242 339919905 0.000000e+00 1020.0
21 TraesCS2B01G476600 chr5B 82.904 544 89 2 2467 3010 43441210 43441749 1.260000e-133 486.0
22 TraesCS2B01G476600 chr6D 94.225 658 36 2 1 658 441753359 441754014 0.000000e+00 1003.0
23 TraesCS2B01G476600 chr6D 85.417 240 29 4 1937 2175 456651640 456651406 8.340000e-61 244.0
24 TraesCS2B01G476600 chr6D 78.710 155 33 0 1940 2094 460818166 460818320 1.480000e-18 104.0
25 TraesCS2B01G476600 chrUn 93.333 660 41 2 1 658 315366426 315367084 0.000000e+00 972.0
26 TraesCS2B01G476600 chr1D 93.140 656 43 2 1 655 74530800 74530146 0.000000e+00 961.0
27 TraesCS2B01G476600 chr6A 93.130 655 40 5 1 655 128442085 128442734 0.000000e+00 955.0
28 TraesCS2B01G476600 chr4D 92.813 654 45 2 7 659 309962590 309961938 0.000000e+00 946.0
29 TraesCS2B01G476600 chr4D 83.835 532 86 0 2479 3010 301552495 301551964 9.630000e-140 507.0
30 TraesCS2B01G476600 chr4D 80.925 173 28 4 2001 2171 333678270 333678101 6.780000e-27 132.0
31 TraesCS2B01G476600 chr4D 78.341 217 38 8 1959 2171 333768501 333768290 6.780000e-27 132.0
32 TraesCS2B01G476600 chr4D 87.500 88 11 0 1941 2028 393786118 393786031 5.310000e-18 102.0
33 TraesCS2B01G476600 chr7B 92.284 661 49 1 1 659 632977185 632977845 0.000000e+00 937.0
34 TraesCS2B01G476600 chr4A 91.908 655 52 1 1 655 685843420 685842767 0.000000e+00 915.0
35 TraesCS2B01G476600 chr4A 84.375 96 11 4 1938 2031 542622331 542622238 1.150000e-14 91.6
36 TraesCS2B01G476600 chr4B 88.943 615 54 6 2412 3012 625291694 625291080 0.000000e+00 747.0
37 TraesCS2B01G476600 chr2D 86.382 492 37 14 659 1124 563141343 563141830 7.450000e-141 510.0
38 TraesCS2B01G476600 chr2D 81.241 677 69 25 1139 1797 563008790 563009426 7.500000e-136 494.0
39 TraesCS2B01G476600 chr2D 79.012 810 97 40 1161 1918 562858943 562859731 1.260000e-133 486.0
40 TraesCS2B01G476600 chr2D 83.830 470 59 9 1163 1619 562895623 562896088 5.970000e-117 431.0
41 TraesCS2B01G476600 chr2D 83.333 468 52 14 659 1119 563096469 563096917 2.800000e-110 409.0
42 TraesCS2B01G476600 chr2D 83.838 198 27 4 660 853 563007156 563007352 1.840000e-42 183.0
43 TraesCS2B01G476600 chr2D 86.986 146 17 1 1797 1940 563100162 563100307 2.400000e-36 163.0
44 TraesCS2B01G476600 chr2D 84.667 150 12 6 2181 2322 563010473 563010619 4.050000e-29 139.0
45 TraesCS2B01G476600 chr2D 79.487 117 13 2 2191 2307 562886636 562886741 4.170000e-09 73.1
46 TraesCS2B01G476600 chr7D 82.904 544 87 3 2467 3010 20464197 20464734 4.510000e-133 484.0
47 TraesCS2B01G476600 chr7D 80.066 602 107 11 2417 3010 497361066 497361662 4.610000e-118 435.0
48 TraesCS2B01G476600 chr6B 82.331 532 86 7 2483 3010 392613656 392613129 3.540000e-124 455.0
49 TraesCS2B01G476600 chr1A 80.418 526 86 13 2492 3010 418079666 418079151 4.710000e-103 385.0
50 TraesCS2B01G476600 chr3D 82.368 397 54 11 2624 3010 601217333 601216943 6.220000e-87 331.0
51 TraesCS2B01G476600 chr3B 78.151 238 41 10 1946 2175 18655398 18655164 1.130000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G476600 chr2B 673627362 673630373 3011 False 5563.000000 5563 100.000000 1 3012 1 chr2B.!!$F4 3011
1 TraesCS2B01G476600 chr2B 673594502 673595990 1488 False 650.000000 817 88.124000 704 1799 2 chr2B.!!$F6 1095
2 TraesCS2B01G476600 chr2B 673227616 673228283 667 False 446.000000 446 79.616000 1277 1918 1 chr2B.!!$F2 641
3 TraesCS2B01G476600 chr2B 673241771 673243574 1803 False 321.000000 521 83.029000 1139 2310 2 chr2B.!!$F5 1171
4 TraesCS2B01G476600 chr2B 673705677 673706188 511 False 276.000000 313 88.554000 661 1124 2 chr2B.!!$F7 463
5 TraesCS2B01G476600 chr2A 703447559 703448874 1315 False 1341.000000 1341 85.841000 659 1940 1 chr2A.!!$F1 1281
6 TraesCS2B01G476600 chr2A 703400237 703403679 3442 False 334.333333 453 84.392000 1284 1940 3 chr2A.!!$F4 656
7 TraesCS2B01G476600 chr2A 703381867 703383629 1762 False 272.250000 488 79.021500 1161 2307 2 chr2A.!!$F3 1146
8 TraesCS2B01G476600 chr5A 640352157 640352822 665 True 1040.000000 1040 95.045000 1 658 1 chr5A.!!$R2 657
9 TraesCS2B01G476600 chr5B 339919242 339919905 663 False 1020.000000 1020 94.586000 1 657 1 chr5B.!!$F2 656
10 TraesCS2B01G476600 chr5B 43441210 43441749 539 False 486.000000 486 82.904000 2467 3010 1 chr5B.!!$F1 543
11 TraesCS2B01G476600 chr6D 441753359 441754014 655 False 1003.000000 1003 94.225000 1 658 1 chr6D.!!$F1 657
12 TraesCS2B01G476600 chrUn 315366426 315367084 658 False 972.000000 972 93.333000 1 658 1 chrUn.!!$F1 657
13 TraesCS2B01G476600 chr1D 74530146 74530800 654 True 961.000000 961 93.140000 1 655 1 chr1D.!!$R1 654
14 TraesCS2B01G476600 chr6A 128442085 128442734 649 False 955.000000 955 93.130000 1 655 1 chr6A.!!$F1 654
15 TraesCS2B01G476600 chr4D 309961938 309962590 652 True 946.000000 946 92.813000 7 659 1 chr4D.!!$R2 652
16 TraesCS2B01G476600 chr4D 301551964 301552495 531 True 507.000000 507 83.835000 2479 3010 1 chr4D.!!$R1 531
17 TraesCS2B01G476600 chr7B 632977185 632977845 660 False 937.000000 937 92.284000 1 659 1 chr7B.!!$F1 658
18 TraesCS2B01G476600 chr4A 685842767 685843420 653 True 915.000000 915 91.908000 1 655 1 chr4A.!!$R2 654
19 TraesCS2B01G476600 chr4B 625291080 625291694 614 True 747.000000 747 88.943000 2412 3012 1 chr4B.!!$R1 600
20 TraesCS2B01G476600 chr2D 562858943 562859731 788 False 486.000000 486 79.012000 1161 1918 1 chr2D.!!$F1 757
21 TraesCS2B01G476600 chr2D 563096469 563100307 3838 False 286.000000 409 85.159500 659 1940 2 chr2D.!!$F6 1281
22 TraesCS2B01G476600 chr2D 563007156 563010619 3463 False 272.000000 494 83.248667 660 2322 3 chr2D.!!$F5 1662
23 TraesCS2B01G476600 chr7D 20464197 20464734 537 False 484.000000 484 82.904000 2467 3010 1 chr7D.!!$F1 543
24 TraesCS2B01G476600 chr7D 497361066 497361662 596 False 435.000000 435 80.066000 2417 3010 1 chr7D.!!$F2 593
25 TraesCS2B01G476600 chr6B 392613129 392613656 527 True 455.000000 455 82.331000 2483 3010 1 chr6B.!!$R1 527
26 TraesCS2B01G476600 chr1A 418079151 418079666 515 True 385.000000 385 80.418000 2492 3010 1 chr1A.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 1333 0.541863 CCCTGTTTCGCCATAGACCT 59.458 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2344 10280 0.02877 TGCCGACGTTTTTGCTGAAG 59.971 50.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 202 1.153568 GCTGCGGACTGCTGTATCA 60.154 57.895 13.91 0.00 46.63 2.15
203 204 1.269778 GCTGCGGACTGCTGTATCATA 60.270 52.381 13.91 0.00 46.63 2.15
360 369 2.358615 GTGAGCGGTGGCATGTCA 60.359 61.111 0.00 0.00 43.41 3.58
550 561 1.880027 GTTAGTCTTTGGGGTGTGCTG 59.120 52.381 0.00 0.00 0.00 4.41
565 576 0.817634 TGCTGGGTCCTTGTTGTTCG 60.818 55.000 0.00 0.00 0.00 3.95
743 1273 0.741915 CTCAAGCCGAGTAGGAGGAC 59.258 60.000 0.00 0.00 45.00 3.85
763 1294 1.291184 TGTCGTCAAATCAGGCAGCG 61.291 55.000 0.00 0.00 0.00 5.18
764 1295 1.005037 TCGTCAAATCAGGCAGCGT 60.005 52.632 0.00 0.00 0.00 5.07
785 1323 2.047655 TACTGCGCCCCTGTTTCG 60.048 61.111 4.18 0.00 0.00 3.46
795 1333 0.541863 CCCTGTTTCGCCATAGACCT 59.458 55.000 0.00 0.00 0.00 3.85
799 1337 3.074412 CTGTTTCGCCATAGACCTGTTT 58.926 45.455 0.00 0.00 0.00 2.83
932 1530 8.391106 CAAAGGTATTCCTACTGAAGAAAATCG 58.609 37.037 0.00 0.00 44.35 3.34
993 1592 2.174969 GCACGGTTGGTCGACACAA 61.175 57.895 18.91 15.64 0.00 3.33
1022 1621 1.285578 GACTCTTGATTCTGCTCGCC 58.714 55.000 0.00 0.00 0.00 5.54
1062 1664 4.504596 GGCGGCCATGGACCATCA 62.505 66.667 18.40 0.00 0.00 3.07
1066 1668 1.380246 GGCCATGGACCATCAGCAA 60.380 57.895 18.40 0.00 0.00 3.91
1176 3554 4.081862 GTCCGCAAGCACCATATATACCTA 60.082 45.833 0.00 0.00 0.00 3.08
1177 3555 4.159693 TCCGCAAGCACCATATATACCTAG 59.840 45.833 0.00 0.00 0.00 3.02
1183 3561 5.101529 AGCACCATATATACCTAGGCCTTT 58.898 41.667 12.58 0.00 0.00 3.11
1235 3637 1.076632 TCTTCCTCCCTCTCCTCGC 60.077 63.158 0.00 0.00 0.00 5.03
1236 3638 1.380515 CTTCCTCCCTCTCCTCGCA 60.381 63.158 0.00 0.00 0.00 5.10
1237 3639 0.972983 CTTCCTCCCTCTCCTCGCAA 60.973 60.000 0.00 0.00 0.00 4.85
1257 3674 2.028043 GCAGCAAGCAAGCGGTTT 59.972 55.556 0.00 0.00 44.79 3.27
1258 3675 2.018324 GCAGCAAGCAAGCGGTTTC 61.018 57.895 0.00 0.00 44.79 2.78
1259 3676 1.359833 CAGCAAGCAAGCGGTTTCA 59.640 52.632 0.00 0.00 40.15 2.69
1260 3677 0.662374 CAGCAAGCAAGCGGTTTCAG 60.662 55.000 0.00 0.00 40.15 3.02
1261 3678 1.103398 AGCAAGCAAGCGGTTTCAGT 61.103 50.000 0.00 0.00 40.15 3.41
1268 3685 0.875059 AAGCGGTTTCAGTAGCTTGC 59.125 50.000 0.00 0.00 46.64 4.01
1269 3686 0.035458 AGCGGTTTCAGTAGCTTGCT 59.965 50.000 0.00 0.00 36.41 3.91
1270 3687 0.444260 GCGGTTTCAGTAGCTTGCTC 59.556 55.000 0.00 0.00 0.00 4.26
1273 3690 2.784347 GGTTTCAGTAGCTTGCTCCTT 58.216 47.619 0.00 0.00 0.00 3.36
1277 3694 3.601443 TCAGTAGCTTGCTCCTTCTTC 57.399 47.619 0.00 0.00 0.00 2.87
1278 3695 3.169099 TCAGTAGCTTGCTCCTTCTTCT 58.831 45.455 0.00 0.00 0.00 2.85
1279 3696 3.580458 TCAGTAGCTTGCTCCTTCTTCTT 59.420 43.478 0.00 0.00 0.00 2.52
1280 3697 3.932089 CAGTAGCTTGCTCCTTCTTCTTC 59.068 47.826 0.00 0.00 0.00 2.87
1281 3698 3.580458 AGTAGCTTGCTCCTTCTTCTTCA 59.420 43.478 0.00 0.00 0.00 3.02
1282 3699 2.777094 AGCTTGCTCCTTCTTCTTCAC 58.223 47.619 0.00 0.00 0.00 3.18
1283 3700 2.105477 AGCTTGCTCCTTCTTCTTCACA 59.895 45.455 0.00 0.00 0.00 3.58
1284 3701 2.483491 GCTTGCTCCTTCTTCTTCACAG 59.517 50.000 0.00 0.00 0.00 3.66
1285 3702 2.175878 TGCTCCTTCTTCTTCACAGC 57.824 50.000 0.00 0.00 0.00 4.40
1286 3703 1.696336 TGCTCCTTCTTCTTCACAGCT 59.304 47.619 0.00 0.00 0.00 4.24
1287 3704 2.105477 TGCTCCTTCTTCTTCACAGCTT 59.895 45.455 0.00 0.00 0.00 3.74
1288 3705 3.145286 GCTCCTTCTTCTTCACAGCTTT 58.855 45.455 0.00 0.00 0.00 3.51
1289 3706 3.058363 GCTCCTTCTTCTTCACAGCTTTG 60.058 47.826 0.00 0.00 0.00 2.77
1291 3708 4.978099 TCCTTCTTCTTCACAGCTTTGAT 58.022 39.130 2.84 0.00 0.00 2.57
1292 3709 4.999950 TCCTTCTTCTTCACAGCTTTGATC 59.000 41.667 2.84 0.00 0.00 2.92
1293 3710 4.142945 CCTTCTTCTTCACAGCTTTGATCG 60.143 45.833 2.84 0.00 0.00 3.69
1295 3712 3.006859 TCTTCTTCACAGCTTTGATCGGA 59.993 43.478 2.84 0.55 0.00 4.55
1296 3713 3.401033 TCTTCACAGCTTTGATCGGAA 57.599 42.857 2.84 0.00 0.00 4.30
1297 3714 3.067106 TCTTCACAGCTTTGATCGGAAC 58.933 45.455 2.84 0.00 0.00 3.62
1298 3715 2.839486 TCACAGCTTTGATCGGAACT 57.161 45.000 0.00 0.00 0.00 3.01
1300 3717 1.391485 CACAGCTTTGATCGGAACTCG 59.609 52.381 0.00 0.00 40.90 4.18
1302 3719 0.741221 AGCTTTGATCGGAACTCGCC 60.741 55.000 0.00 0.00 39.05 5.54
1303 3720 1.019278 GCTTTGATCGGAACTCGCCA 61.019 55.000 0.00 0.00 39.05 5.69
1345 3762 2.094494 TCAGTAGCTTGCTCCTTCTTCG 60.094 50.000 0.00 0.00 0.00 3.79
1346 3763 2.094494 CAGTAGCTTGCTCCTTCTTCGA 60.094 50.000 0.00 0.00 0.00 3.71
1452 5331 4.302067 ACATCTTCATGTACAGAGGGGAT 58.698 43.478 0.33 0.00 41.81 3.85
1591 8200 1.192146 TCAAGAGTCCGGGAAGGTGG 61.192 60.000 0.00 0.00 41.99 4.61
1593 8202 4.452733 GAGTCCGGGAAGGTGGCG 62.453 72.222 0.00 0.00 41.99 5.69
1638 8247 2.496817 CTCGTGGCCCAGTAGAGC 59.503 66.667 0.00 0.00 0.00 4.09
1736 8382 5.480642 AGCAGTGAAGAATCTGAGAAAGA 57.519 39.130 0.00 0.00 39.94 2.52
1813 8545 1.059584 TCCTTGTGAGCCCTGGTTGA 61.060 55.000 0.00 0.00 0.00 3.18
1823 8569 0.827089 CCCTGGTTGATGCAACACCA 60.827 55.000 12.94 12.94 45.11 4.17
1824 8570 1.259609 CCTGGTTGATGCAACACCAT 58.740 50.000 13.73 0.00 45.11 3.55
1825 8571 2.445427 CCTGGTTGATGCAACACCATA 58.555 47.619 13.73 0.00 45.11 2.74
1829 8586 4.593956 TGGTTGATGCAACACCATATACA 58.406 39.130 10.23 0.00 45.11 2.29
1831 8588 5.478332 TGGTTGATGCAACACCATATACAAA 59.522 36.000 10.23 0.00 45.11 2.83
1891 8665 6.922247 AGATCATGACTTGTGAGCTTTATG 57.078 37.500 0.00 0.00 39.10 1.90
1941 8721 4.933400 GTCCGACAAAACTATGCCTTAAGA 59.067 41.667 3.36 0.00 0.00 2.10
1944 8820 4.391830 CGACAAAACTATGCCTTAAGAGCA 59.608 41.667 17.36 17.36 45.94 4.26
1945 8821 5.106712 CGACAAAACTATGCCTTAAGAGCAA 60.107 40.000 18.48 9.93 44.83 3.91
1949 8825 6.502136 AAACTATGCCTTAAGAGCAACTTC 57.498 37.500 18.48 0.00 44.83 3.01
1954 8830 2.665794 GCCTTAAGAGCAACTTCAACGC 60.666 50.000 3.36 0.00 39.72 4.84
1956 8832 1.144969 TAAGAGCAACTTCAACGCGG 58.855 50.000 12.47 0.00 39.72 6.46
1958 8834 3.911155 GAGCAACTTCAACGCGGCG 62.911 63.158 22.36 22.36 0.00 6.46
1962 8838 3.308878 AACTTCAACGCGGCGATGC 62.309 57.895 30.94 0.00 30.00 3.91
1966 8842 2.193865 TTCAACGCGGCGATGCATTT 62.194 50.000 30.94 8.75 34.15 2.32
1967 8843 1.801113 CAACGCGGCGATGCATTTT 60.801 52.632 30.94 7.93 34.15 1.82
1968 8844 1.801113 AACGCGGCGATGCATTTTG 60.801 52.632 30.94 0.00 34.15 2.44
1970 8846 2.216920 CGCGGCGATGCATTTTGTC 61.217 57.895 19.16 0.00 34.15 3.18
1972 8848 1.583451 CGGCGATGCATTTTGTCCG 60.583 57.895 0.00 6.17 0.00 4.79
1973 8849 1.873572 GGCGATGCATTTTGTCCGC 60.874 57.895 17.10 17.10 41.61 5.54
1974 8850 2.216920 GCGATGCATTTTGTCCGCG 61.217 57.895 11.68 0.00 33.42 6.46
1976 8852 2.202466 ATGCATTTTGTCCGCGCG 60.202 55.556 25.67 25.67 0.00 6.86
1979 8855 4.734920 CATTTTGTCCGCGCGCGT 62.735 61.111 45.51 27.24 37.81 6.01
1980 8856 4.439472 ATTTTGTCCGCGCGCGTC 62.439 61.111 45.51 36.59 37.81 5.19
1995 8871 2.433664 GTCCGTTTGGGTCGCGAT 60.434 61.111 14.06 0.00 37.00 4.58
1997 8873 2.740826 CCGTTTGGGTCGCGATGT 60.741 61.111 14.06 0.00 0.00 3.06
1999 8875 1.689352 CCGTTTGGGTCGCGATGTAC 61.689 60.000 14.06 0.00 0.00 2.90
2000 8876 1.009903 CGTTTGGGTCGCGATGTACA 61.010 55.000 14.06 6.48 0.00 2.90
2003 8879 0.604073 TTGGGTCGCGATGTACAGAA 59.396 50.000 14.06 0.00 0.00 3.02
2004 8880 0.604073 TGGGTCGCGATGTACAGAAA 59.396 50.000 14.06 0.00 0.00 2.52
2005 8881 1.001068 TGGGTCGCGATGTACAGAAAA 59.999 47.619 14.06 0.00 0.00 2.29
2006 8882 2.070783 GGGTCGCGATGTACAGAAAAA 58.929 47.619 14.06 0.00 0.00 1.94
2007 8883 2.676342 GGGTCGCGATGTACAGAAAAAT 59.324 45.455 14.06 0.00 0.00 1.82
2008 8884 3.242316 GGGTCGCGATGTACAGAAAAATC 60.242 47.826 14.06 0.00 0.00 2.17
2009 8885 3.541516 GGTCGCGATGTACAGAAAAATCG 60.542 47.826 14.06 9.38 43.60 3.34
2010 8886 2.601314 TCGCGATGTACAGAAAAATCGG 59.399 45.455 3.71 6.48 41.62 4.18
2012 8888 3.541516 CGCGATGTACAGAAAAATCGGTC 60.542 47.826 14.21 0.76 41.62 4.79
2013 8889 3.242316 GCGATGTACAGAAAAATCGGTCC 60.242 47.826 14.21 0.00 41.62 4.46
2015 8891 4.390603 CGATGTACAGAAAAATCGGTCCAA 59.609 41.667 0.33 0.00 38.54 3.53
2016 8892 5.622770 ATGTACAGAAAAATCGGTCCAAC 57.377 39.130 0.33 0.00 0.00 3.77
2017 8893 3.495377 TGTACAGAAAAATCGGTCCAACG 59.505 43.478 0.00 0.00 0.00 4.10
2018 8894 1.265905 ACAGAAAAATCGGTCCAACGC 59.734 47.619 0.00 0.00 0.00 4.84
2019 8895 0.515564 AGAAAAATCGGTCCAACGCG 59.484 50.000 3.53 3.53 0.00 6.01
2021 8897 2.466520 AAAAATCGGTCCAACGCGCC 62.467 55.000 5.73 0.00 0.00 6.53
2028 8904 4.380781 TCCAACGCGCCGATCCAA 62.381 61.111 5.73 0.00 0.00 3.53
2030 8906 2.202298 CAACGCGCCGATCCAAAC 60.202 61.111 5.73 0.00 0.00 2.93
2033 8909 3.483665 CGCGCCGATCCAAACGAA 61.484 61.111 0.00 0.00 0.00 3.85
2034 8910 2.097728 GCGCCGATCCAAACGAAC 59.902 61.111 0.00 0.00 0.00 3.95
2035 8911 2.394136 CGCCGATCCAAACGAACG 59.606 61.111 0.00 0.00 36.58 3.95
2036 8912 2.097728 GCCGATCCAAACGAACGC 59.902 61.111 0.00 0.00 35.57 4.84
2037 8913 2.394136 CCGATCCAAACGAACGCG 59.606 61.111 3.53 3.53 44.79 6.01
2051 9314 2.034339 CGAACGCGTGTCTACTTTTTGT 60.034 45.455 14.98 0.00 0.00 2.83
2053 9316 1.862827 ACGCGTGTCTACTTTTTGTCC 59.137 47.619 12.93 0.00 0.00 4.02
2054 9317 1.136721 CGCGTGTCTACTTTTTGTCCG 60.137 52.381 0.00 0.00 0.00 4.79
2058 9321 2.223377 GTGTCTACTTTTTGTCCGCCTG 59.777 50.000 0.00 0.00 0.00 4.85
2061 9324 2.300723 TCTACTTTTTGTCCGCCTGCTA 59.699 45.455 0.00 0.00 0.00 3.49
2065 9328 3.057526 ACTTTTTGTCCGCCTGCTAATTC 60.058 43.478 0.00 0.00 0.00 2.17
2066 9329 2.192664 TTTGTCCGCCTGCTAATTCA 57.807 45.000 0.00 0.00 0.00 2.57
2068 9331 2.418368 TGTCCGCCTGCTAATTCATT 57.582 45.000 0.00 0.00 0.00 2.57
2069 9332 2.288666 TGTCCGCCTGCTAATTCATTC 58.711 47.619 0.00 0.00 0.00 2.67
2070 9333 1.604278 GTCCGCCTGCTAATTCATTCC 59.396 52.381 0.00 0.00 0.00 3.01
2071 9334 0.954452 CCGCCTGCTAATTCATTCCC 59.046 55.000 0.00 0.00 0.00 3.97
2073 9336 0.954452 GCCTGCTAATTCATTCCCGG 59.046 55.000 0.00 0.00 0.00 5.73
2074 9337 0.954452 CCTGCTAATTCATTCCCGGC 59.046 55.000 0.00 0.00 0.00 6.13
2075 9338 0.954452 CTGCTAATTCATTCCCGGCC 59.046 55.000 0.00 0.00 0.00 6.13
2076 9339 0.467290 TGCTAATTCATTCCCGGCCC 60.467 55.000 0.00 0.00 0.00 5.80
2077 9340 0.467290 GCTAATTCATTCCCGGCCCA 60.467 55.000 0.00 0.00 0.00 5.36
2078 9341 1.823250 GCTAATTCATTCCCGGCCCAT 60.823 52.381 0.00 0.00 0.00 4.00
2082 9345 1.650528 TTCATTCCCGGCCCATTTTT 58.349 45.000 0.00 0.00 0.00 1.94
2083 9346 2.534042 TCATTCCCGGCCCATTTTTA 57.466 45.000 0.00 0.00 0.00 1.52
2085 9348 2.763448 TCATTCCCGGCCCATTTTTAAG 59.237 45.455 0.00 0.00 0.00 1.85
2087 9350 0.973496 TCCCGGCCCATTTTTAAGCC 60.973 55.000 0.00 0.00 42.18 4.35
2088 9351 1.520192 CCGGCCCATTTTTAAGCCC 59.480 57.895 0.00 0.00 42.66 5.19
2089 9352 1.520192 CGGCCCATTTTTAAGCCCC 59.480 57.895 0.00 0.00 42.66 5.80
2091 9354 1.212375 GGCCCATTTTTAAGCCCCAT 58.788 50.000 0.00 0.00 39.60 4.00
2092 9355 1.563879 GGCCCATTTTTAAGCCCCATT 59.436 47.619 0.00 0.00 39.60 3.16
2094 9357 3.201045 GGCCCATTTTTAAGCCCCATTTA 59.799 43.478 0.00 0.00 39.60 1.40
2095 9358 4.196193 GCCCATTTTTAAGCCCCATTTAC 58.804 43.478 0.00 0.00 0.00 2.01
2096 9359 4.438148 CCCATTTTTAAGCCCCATTTACG 58.562 43.478 0.00 0.00 0.00 3.18
2097 9360 4.081365 CCCATTTTTAAGCCCCATTTACGT 60.081 41.667 0.00 0.00 0.00 3.57
2100 9363 1.371595 TTAAGCCCCATTTACGTCGC 58.628 50.000 0.00 0.00 0.00 5.19
2101 9364 0.462403 TAAGCCCCATTTACGTCGCC 60.462 55.000 0.00 0.00 0.00 5.54
2103 9366 3.569690 CCCCATTTACGTCGCCGC 61.570 66.667 0.00 0.00 37.70 6.53
2104 9367 3.920553 CCCATTTACGTCGCCGCG 61.921 66.667 6.39 6.39 37.70 6.46
2106 9369 2.881827 CATTTACGTCGCCGCGGA 60.882 61.111 33.48 5.65 37.70 5.54
2107 9370 2.882301 ATTTACGTCGCCGCGGAC 60.882 61.111 33.48 18.97 37.70 4.79
2118 9381 3.698463 CGCGGACACAACGTGGAC 61.698 66.667 0.00 0.00 37.94 4.02
2119 9382 3.698463 GCGGACACAACGTGGACG 61.698 66.667 0.00 0.00 46.33 4.79
2120 9383 3.698463 CGGACACAACGTGGACGC 61.698 66.667 0.00 0.00 44.43 5.19
2121 9384 2.586635 GGACACAACGTGGACGCA 60.587 61.111 0.00 0.00 44.43 5.24
2122 9385 2.624264 GACACAACGTGGACGCAC 59.376 61.111 0.00 0.00 44.43 5.34
2131 9394 2.356553 TGGACGCACGCCAACTAC 60.357 61.111 4.15 0.00 31.13 2.73
2133 9396 2.092882 GGACGCACGCCAACTACTC 61.093 63.158 0.00 0.00 0.00 2.59
2134 9397 2.048503 ACGCACGCCAACTACTCC 60.049 61.111 0.00 0.00 0.00 3.85
2135 9398 2.813908 CGCACGCCAACTACTCCC 60.814 66.667 0.00 0.00 0.00 4.30
2136 9399 2.436115 GCACGCCAACTACTCCCC 60.436 66.667 0.00 0.00 0.00 4.81
2137 9400 2.955881 GCACGCCAACTACTCCCCT 61.956 63.158 0.00 0.00 0.00 4.79
2138 9401 1.079127 CACGCCAACTACTCCCCTG 60.079 63.158 0.00 0.00 0.00 4.45
2139 9402 2.291043 ACGCCAACTACTCCCCTGG 61.291 63.158 0.00 0.00 0.00 4.45
2141 9404 2.998949 CCAACTACTCCCCTGGCC 59.001 66.667 0.00 0.00 0.00 5.36
2143 9406 2.687566 AACTACTCCCCTGGCCCG 60.688 66.667 0.00 0.00 0.00 6.13
2162 9425 2.190756 CCAGTCGGTGGTAGTCTCC 58.809 63.158 0.00 0.00 42.17 3.71
2172 9435 3.713826 TGGTAGTCTCCACCATTTTCC 57.286 47.619 0.00 0.00 41.17 3.13
2175 9438 3.010250 GGTAGTCTCCACCATTTTCCCTT 59.990 47.826 0.00 0.00 36.01 3.95
2176 9439 3.903530 AGTCTCCACCATTTTCCCTTT 57.096 42.857 0.00 0.00 0.00 3.11
2177 9440 3.500343 AGTCTCCACCATTTTCCCTTTG 58.500 45.455 0.00 0.00 0.00 2.77
2179 9442 1.901833 CTCCACCATTTTCCCTTTGGG 59.098 52.381 0.00 0.00 46.11 4.12
2186 10114 1.984066 TTTTCCCTTTGGGTGTACCG 58.016 50.000 2.25 0.00 44.74 4.02
2315 10251 3.138128 GTTGCCGGCACCATACCC 61.138 66.667 32.95 7.24 0.00 3.69
2316 10252 4.787286 TTGCCGGCACCATACCCG 62.787 66.667 32.95 0.00 43.97 5.28
2320 10256 4.467084 CGGCACCATACCCGCTGT 62.467 66.667 0.00 0.00 37.85 4.40
2321 10257 2.824041 GGCACCATACCCGCTGTG 60.824 66.667 0.00 0.00 0.00 3.66
2322 10258 3.508840 GCACCATACCCGCTGTGC 61.509 66.667 0.00 0.00 46.09 4.57
2323 10259 2.268920 CACCATACCCGCTGTGCT 59.731 61.111 0.00 0.00 0.00 4.40
2324 10260 1.377202 CACCATACCCGCTGTGCTT 60.377 57.895 0.00 0.00 0.00 3.91
2325 10261 1.078426 ACCATACCCGCTGTGCTTC 60.078 57.895 0.00 0.00 0.00 3.86
2326 10262 1.819632 CCATACCCGCTGTGCTTCC 60.820 63.158 0.00 0.00 0.00 3.46
2327 10263 1.078497 CATACCCGCTGTGCTTCCA 60.078 57.895 0.00 0.00 0.00 3.53
2328 10264 0.676466 CATACCCGCTGTGCTTCCAA 60.676 55.000 0.00 0.00 0.00 3.53
2329 10265 0.392998 ATACCCGCTGTGCTTCCAAG 60.393 55.000 0.00 0.00 0.00 3.61
2330 10266 1.476845 TACCCGCTGTGCTTCCAAGA 61.477 55.000 0.00 0.00 0.00 3.02
2331 10267 1.600636 CCCGCTGTGCTTCCAAGAA 60.601 57.895 0.00 0.00 0.00 2.52
2332 10268 1.172180 CCCGCTGTGCTTCCAAGAAA 61.172 55.000 0.00 0.00 0.00 2.52
2333 10269 0.667993 CCGCTGTGCTTCCAAGAAAA 59.332 50.000 0.00 0.00 0.00 2.29
2334 10270 1.066908 CCGCTGTGCTTCCAAGAAAAA 59.933 47.619 0.00 0.00 0.00 1.94
2335 10271 2.119457 CGCTGTGCTTCCAAGAAAAAC 58.881 47.619 0.00 0.00 0.00 2.43
2336 10272 2.473816 GCTGTGCTTCCAAGAAAAACC 58.526 47.619 0.00 0.00 0.00 3.27
2337 10273 2.803133 GCTGTGCTTCCAAGAAAAACCC 60.803 50.000 0.00 0.00 0.00 4.11
2338 10274 2.430332 CTGTGCTTCCAAGAAAAACCCA 59.570 45.455 0.00 0.00 0.00 4.51
2339 10275 2.167487 TGTGCTTCCAAGAAAAACCCAC 59.833 45.455 0.00 0.00 0.00 4.61
2340 10276 2.430694 GTGCTTCCAAGAAAAACCCACT 59.569 45.455 0.00 0.00 0.00 4.00
2341 10277 2.430332 TGCTTCCAAGAAAAACCCACTG 59.570 45.455 0.00 0.00 0.00 3.66
2342 10278 2.693074 GCTTCCAAGAAAAACCCACTGA 59.307 45.455 0.00 0.00 0.00 3.41
2343 10279 3.243535 GCTTCCAAGAAAAACCCACTGAG 60.244 47.826 0.00 0.00 0.00 3.35
2344 10280 2.306847 TCCAAGAAAAACCCACTGAGC 58.693 47.619 0.00 0.00 0.00 4.26
2345 10281 2.091885 TCCAAGAAAAACCCACTGAGCT 60.092 45.455 0.00 0.00 0.00 4.09
2346 10282 2.695147 CCAAGAAAAACCCACTGAGCTT 59.305 45.455 0.00 0.00 0.00 3.74
2347 10283 3.243535 CCAAGAAAAACCCACTGAGCTTC 60.244 47.826 0.00 0.00 0.00 3.86
2348 10284 3.297134 AGAAAAACCCACTGAGCTTCA 57.703 42.857 0.00 0.00 0.00 3.02
2358 10294 2.763249 CTGAGCTTCAGCAAAAACGT 57.237 45.000 0.75 0.00 45.16 3.99
2359 10295 2.644078 CTGAGCTTCAGCAAAAACGTC 58.356 47.619 0.75 0.00 45.16 4.34
2360 10296 1.003972 TGAGCTTCAGCAAAAACGTCG 60.004 47.619 0.75 0.00 45.16 5.12
2361 10297 0.307760 AGCTTCAGCAAAAACGTCGG 59.692 50.000 0.75 0.00 45.16 4.79
2362 10298 1.268778 GCTTCAGCAAAAACGTCGGC 61.269 55.000 0.00 0.00 41.59 5.54
2363 10299 0.028770 CTTCAGCAAAAACGTCGGCA 59.971 50.000 0.00 0.00 0.00 5.69
2364 10300 0.665835 TTCAGCAAAAACGTCGGCAT 59.334 45.000 0.00 0.00 0.00 4.40
2365 10301 0.665835 TCAGCAAAAACGTCGGCATT 59.334 45.000 0.00 0.00 0.00 3.56
2366 10302 1.066303 TCAGCAAAAACGTCGGCATTT 59.934 42.857 0.00 0.00 0.00 2.32
2367 10303 1.189884 CAGCAAAAACGTCGGCATTTG 59.810 47.619 12.48 12.48 36.19 2.32
2368 10304 1.202359 AGCAAAAACGTCGGCATTTGT 60.202 42.857 15.99 0.00 35.68 2.83
2369 10305 1.590698 GCAAAAACGTCGGCATTTGTT 59.409 42.857 15.99 0.00 35.68 2.83
2370 10306 2.029849 GCAAAAACGTCGGCATTTGTTT 59.970 40.909 15.99 0.00 35.68 2.83
2371 10307 3.243177 GCAAAAACGTCGGCATTTGTTTA 59.757 39.130 15.99 0.00 35.68 2.01
2372 10308 4.742796 CAAAAACGTCGGCATTTGTTTAC 58.257 39.130 0.00 0.00 33.71 2.01
2373 10309 3.974871 AAACGTCGGCATTTGTTTACT 57.025 38.095 0.00 0.00 33.11 2.24
2374 10310 3.531262 AACGTCGGCATTTGTTTACTC 57.469 42.857 0.00 0.00 0.00 2.59
2375 10311 1.802365 ACGTCGGCATTTGTTTACTCC 59.198 47.619 0.00 0.00 0.00 3.85
2376 10312 2.073816 CGTCGGCATTTGTTTACTCCT 58.926 47.619 0.00 0.00 0.00 3.69
2377 10313 2.159707 CGTCGGCATTTGTTTACTCCTG 60.160 50.000 0.00 0.00 0.00 3.86
2378 10314 1.810151 TCGGCATTTGTTTACTCCTGC 59.190 47.619 0.00 0.00 0.00 4.85
2379 10315 1.812571 CGGCATTTGTTTACTCCTGCT 59.187 47.619 0.00 0.00 0.00 4.24
2380 10316 3.006940 CGGCATTTGTTTACTCCTGCTA 58.993 45.455 0.00 0.00 0.00 3.49
2381 10317 3.181510 CGGCATTTGTTTACTCCTGCTAC 60.182 47.826 0.00 0.00 0.00 3.58
2382 10318 3.181510 GGCATTTGTTTACTCCTGCTACG 60.182 47.826 0.00 0.00 0.00 3.51
2383 10319 3.727970 GCATTTGTTTACTCCTGCTACGC 60.728 47.826 0.00 0.00 0.00 4.42
2384 10320 3.396260 TTTGTTTACTCCTGCTACGCT 57.604 42.857 0.00 0.00 0.00 5.07
2385 10321 4.524316 TTTGTTTACTCCTGCTACGCTA 57.476 40.909 0.00 0.00 0.00 4.26
2386 10322 3.777465 TGTTTACTCCTGCTACGCTAG 57.223 47.619 0.00 0.00 0.00 3.42
2387 10323 2.426024 TGTTTACTCCTGCTACGCTAGG 59.574 50.000 0.00 0.00 35.34 3.02
2388 10324 1.688772 TTACTCCTGCTACGCTAGGG 58.311 55.000 5.05 5.05 34.76 3.53
2389 10325 0.841961 TACTCCTGCTACGCTAGGGA 59.158 55.000 14.59 0.00 34.76 4.20
2390 10326 0.033405 ACTCCTGCTACGCTAGGGAA 60.033 55.000 14.59 0.00 34.76 3.97
2391 10327 0.386113 CTCCTGCTACGCTAGGGAAC 59.614 60.000 14.59 2.88 34.76 3.62
2406 10342 2.270352 GGAACCAACCACTCATCACA 57.730 50.000 0.00 0.00 0.00 3.58
2407 10343 2.582052 GGAACCAACCACTCATCACAA 58.418 47.619 0.00 0.00 0.00 3.33
2408 10344 2.554032 GGAACCAACCACTCATCACAAG 59.446 50.000 0.00 0.00 0.00 3.16
2409 10345 1.609208 ACCAACCACTCATCACAAGC 58.391 50.000 0.00 0.00 0.00 4.01
2410 10346 1.143684 ACCAACCACTCATCACAAGCT 59.856 47.619 0.00 0.00 0.00 3.74
2411 10347 1.808945 CCAACCACTCATCACAAGCTC 59.191 52.381 0.00 0.00 0.00 4.09
2412 10348 2.497138 CAACCACTCATCACAAGCTCA 58.503 47.619 0.00 0.00 0.00 4.26
2413 10349 2.469274 ACCACTCATCACAAGCTCAG 57.531 50.000 0.00 0.00 0.00 3.35
2414 10350 1.002888 ACCACTCATCACAAGCTCAGG 59.997 52.381 0.00 0.00 0.00 3.86
2415 10351 1.085091 CACTCATCACAAGCTCAGGC 58.915 55.000 0.00 0.00 39.06 4.85
2497 10447 0.902531 ATCACGGTGGGAGTCGATTT 59.097 50.000 8.50 0.00 0.00 2.17
2549 10500 1.271434 CCGACGATGAGGAGGATAGGA 60.271 57.143 0.00 0.00 0.00 2.94
2553 10504 2.158652 ACGATGAGGAGGATAGGAACGA 60.159 50.000 0.00 0.00 0.00 3.85
2565 10516 2.488355 GAACGACGGCGGATCTGA 59.512 61.111 18.49 0.00 43.17 3.27
2662 10613 1.952296 GCCGGCTTCATTGATGAGATT 59.048 47.619 22.15 0.00 38.19 2.40
2693 10644 4.096003 ATCGTGCTTGGGACGGGG 62.096 66.667 11.17 0.00 37.43 5.73
2708 10659 4.966787 GGGTGGGCAAAGCGGACA 62.967 66.667 0.00 0.00 0.00 4.02
2709 10660 2.676471 GGTGGGCAAAGCGGACAT 60.676 61.111 0.00 0.00 0.00 3.06
2720 10671 3.068881 CGGACATGGTGGAGGTGT 58.931 61.111 0.00 0.00 0.00 4.16
2851 10803 0.531200 GGAAGGTCGTGAAGGATCGT 59.469 55.000 0.00 0.00 0.00 3.73
2867 10819 2.039405 CGTCGGAGAAGGTCTCGGT 61.039 63.158 11.25 0.00 44.28 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 202 1.076533 CTCGAGCAACAACGCCGTAT 61.077 55.000 0.00 0.00 0.00 3.06
203 204 3.036084 CTCGAGCAACAACGCCGT 61.036 61.111 0.00 0.00 0.00 5.68
252 253 4.329545 AACGCCGCACCACATCCT 62.330 61.111 0.00 0.00 0.00 3.24
550 561 0.466739 AACCCGAACAACAAGGACCC 60.467 55.000 0.00 0.00 0.00 4.46
743 1273 0.445436 GCTGCCTGATTTGACGACAG 59.555 55.000 0.00 0.00 0.00 3.51
763 1294 1.896122 AACAGGGGCGCAGTAGGTAC 61.896 60.000 10.83 0.00 0.00 3.34
764 1295 1.196104 AAACAGGGGCGCAGTAGGTA 61.196 55.000 10.83 0.00 0.00 3.08
785 1323 5.855740 ACTAGACTAAACAGGTCTATGGC 57.144 43.478 0.00 0.00 42.85 4.40
820 1369 1.619827 GCTCCATGGATCTCTCCTCTG 59.380 57.143 16.63 0.00 42.59 3.35
928 1525 1.268992 TTCCCACCATCCCGTCGATT 61.269 55.000 0.00 0.00 0.00 3.34
932 1530 1.173913 CTTTTTCCCACCATCCCGTC 58.826 55.000 0.00 0.00 0.00 4.79
970 1569 1.149987 GTCGACCAACCGTGCAATAA 58.850 50.000 3.51 0.00 0.00 1.40
976 1575 0.808453 AGTTGTGTCGACCAACCGTG 60.808 55.000 29.91 0.00 42.46 4.94
1022 1621 2.797156 GCACTACTGATGCACTATTCCG 59.203 50.000 0.00 0.00 42.88 4.30
1062 1664 3.177884 TGGTGGTGGAGCCTTGCT 61.178 61.111 0.00 0.00 43.88 3.91
1176 3554 1.356059 GAAGAAAGGAGGGAAAGGCCT 59.644 52.381 0.00 0.00 36.66 5.19
1177 3555 1.075536 TGAAGAAAGGAGGGAAAGGCC 59.924 52.381 0.00 0.00 0.00 5.19
1183 3561 2.777692 AGTTGTGTGAAGAAAGGAGGGA 59.222 45.455 0.00 0.00 0.00 4.20
1235 3637 2.014554 CGCTTGCTTGCTGCTGTTG 61.015 57.895 0.00 0.00 43.37 3.33
1236 3638 2.333938 CGCTTGCTTGCTGCTGTT 59.666 55.556 0.00 0.00 43.37 3.16
1237 3639 3.667282 CCGCTTGCTTGCTGCTGT 61.667 61.111 0.00 0.00 43.37 4.40
1254 3671 3.669536 AGAAGGAGCAAGCTACTGAAAC 58.330 45.455 7.72 0.83 37.30 2.78
1255 3672 4.040952 AGAAGAAGGAGCAAGCTACTGAAA 59.959 41.667 7.72 0.00 37.30 2.69
1256 3673 3.580458 AGAAGAAGGAGCAAGCTACTGAA 59.420 43.478 7.72 0.00 37.30 3.02
1257 3674 3.169099 AGAAGAAGGAGCAAGCTACTGA 58.831 45.455 7.72 0.00 37.30 3.41
1258 3675 3.608316 AGAAGAAGGAGCAAGCTACTG 57.392 47.619 7.72 0.00 37.30 2.74
1259 3676 3.580458 TGAAGAAGAAGGAGCAAGCTACT 59.420 43.478 0.00 0.00 39.29 2.57
1260 3677 3.682377 GTGAAGAAGAAGGAGCAAGCTAC 59.318 47.826 0.00 0.00 0.00 3.58
1261 3678 3.324846 TGTGAAGAAGAAGGAGCAAGCTA 59.675 43.478 0.00 0.00 0.00 3.32
1266 3683 1.696336 AGCTGTGAAGAAGAAGGAGCA 59.304 47.619 0.00 0.00 0.00 4.26
1267 3684 2.470983 AGCTGTGAAGAAGAAGGAGC 57.529 50.000 0.00 0.00 0.00 4.70
1268 3685 4.384056 TCAAAGCTGTGAAGAAGAAGGAG 58.616 43.478 3.39 0.00 0.00 3.69
1269 3686 4.422073 TCAAAGCTGTGAAGAAGAAGGA 57.578 40.909 3.39 0.00 0.00 3.36
1270 3687 4.142945 CGATCAAAGCTGTGAAGAAGAAGG 60.143 45.833 11.47 0.00 0.00 3.46
1273 3690 3.006859 TCCGATCAAAGCTGTGAAGAAGA 59.993 43.478 11.47 3.02 0.00 2.87
1277 3694 3.070018 AGTTCCGATCAAAGCTGTGAAG 58.930 45.455 11.47 8.17 0.00 3.02
1278 3695 3.067106 GAGTTCCGATCAAAGCTGTGAA 58.933 45.455 11.47 0.00 0.00 3.18
1279 3696 2.688507 GAGTTCCGATCAAAGCTGTGA 58.311 47.619 9.56 9.56 0.00 3.58
1280 3697 1.391485 CGAGTTCCGATCAAAGCTGTG 59.609 52.381 0.00 0.00 41.76 3.66
1281 3698 1.714794 CGAGTTCCGATCAAAGCTGT 58.285 50.000 0.00 0.00 41.76 4.40
1282 3699 0.371645 GCGAGTTCCGATCAAAGCTG 59.628 55.000 0.00 0.00 41.76 4.24
1283 3700 0.741221 GGCGAGTTCCGATCAAAGCT 60.741 55.000 0.00 0.00 41.76 3.74
1284 3701 1.019278 TGGCGAGTTCCGATCAAAGC 61.019 55.000 0.00 0.00 41.76 3.51
1285 3702 1.128692 GTTGGCGAGTTCCGATCAAAG 59.871 52.381 0.00 0.00 41.76 2.77
1286 3703 1.153353 GTTGGCGAGTTCCGATCAAA 58.847 50.000 0.00 0.00 41.76 2.69
1287 3704 0.034198 TGTTGGCGAGTTCCGATCAA 59.966 50.000 0.00 0.00 41.76 2.57
1288 3705 0.669318 GTGTTGGCGAGTTCCGATCA 60.669 55.000 0.00 0.00 41.76 2.92
1289 3706 0.669318 TGTGTTGGCGAGTTCCGATC 60.669 55.000 0.00 0.00 41.76 3.69
1291 3708 1.593209 GTGTGTTGGCGAGTTCCGA 60.593 57.895 0.00 0.00 41.76 4.55
1292 3709 2.604174 GGTGTGTTGGCGAGTTCCG 61.604 63.158 0.00 0.00 42.21 4.30
1293 3710 2.258726 GGGTGTGTTGGCGAGTTCC 61.259 63.158 0.00 0.00 0.00 3.62
1295 3712 1.822186 GTGGGTGTGTTGGCGAGTT 60.822 57.895 0.00 0.00 0.00 3.01
1296 3713 2.203153 GTGGGTGTGTTGGCGAGT 60.203 61.111 0.00 0.00 0.00 4.18
1297 3714 1.172180 ATTGTGGGTGTGTTGGCGAG 61.172 55.000 0.00 0.00 0.00 5.03
1298 3715 1.152860 ATTGTGGGTGTGTTGGCGA 60.153 52.632 0.00 0.00 0.00 5.54
1300 3717 1.367102 CCATTGTGGGTGTGTTGGC 59.633 57.895 0.00 0.00 32.67 4.52
1302 3719 1.007502 CGCCATTGTGGGTGTGTTG 60.008 57.895 0.00 0.00 38.19 3.33
1303 3720 2.199652 CCGCCATTGTGGGTGTGTT 61.200 57.895 0.00 0.00 38.19 3.32
1538 5417 2.516460 CCGATCCCGACGAGAGGT 60.516 66.667 0.00 0.00 38.22 3.85
1539 5418 2.203167 TCCGATCCCGACGAGAGG 60.203 66.667 0.00 0.00 38.22 3.69
1593 8202 2.558554 TTTCTGGCTAGCTCGCGACC 62.559 60.000 15.72 4.99 0.00 4.79
1608 8217 1.373497 CACGAGGCACGAGCTTTCT 60.373 57.895 12.15 0.00 45.77 2.52
1638 8247 1.339055 TGATTCAAGCCGGGTTCTCTG 60.339 52.381 17.75 6.29 0.00 3.35
1690 8324 1.598130 GGCTCAGGCGTGACAAACT 60.598 57.895 4.68 0.00 39.81 2.66
1736 8382 2.110627 GGAGCCTCAGCGCATGAT 59.889 61.111 11.47 0.00 46.67 2.45
1806 8538 4.639755 TGTATATGGTGTTGCATCAACCAG 59.360 41.667 17.52 0.00 42.96 4.00
1813 8545 6.788598 TCCAATTTGTATATGGTGTTGCAT 57.211 33.333 0.00 0.00 35.66 3.96
1823 8569 9.223291 TGAAATGGGGATTTCCAATTTGTATAT 57.777 29.630 0.60 0.00 46.53 0.86
1824 8570 8.615360 TGAAATGGGGATTTCCAATTTGTATA 57.385 30.769 0.60 0.00 46.53 1.47
1825 8571 7.507797 TGAAATGGGGATTTCCAATTTGTAT 57.492 32.000 0.60 0.00 46.53 2.29
1831 8588 4.596643 TGTGTTGAAATGGGGATTTCCAAT 59.403 37.500 0.00 0.00 40.62 3.16
1941 8721 4.012895 CGCCGCGTTGAAGTTGCT 62.013 61.111 4.92 0.00 0.00 3.91
1944 8820 2.860293 CATCGCCGCGTTGAAGTT 59.140 55.556 17.06 0.00 0.00 2.66
1945 8821 3.788766 GCATCGCCGCGTTGAAGT 61.789 61.111 24.34 0.00 0.00 3.01
1949 8825 1.801113 AAAATGCATCGCCGCGTTG 60.801 52.632 17.56 17.56 40.20 4.10
1954 8830 1.583451 CGGACAAAATGCATCGCCG 60.583 57.895 0.00 5.48 0.00 6.46
1956 8832 2.216920 CGCGGACAAAATGCATCGC 61.217 57.895 15.81 15.81 39.79 4.58
1958 8834 2.216920 CGCGCGGACAAAATGCATC 61.217 57.895 24.84 0.00 0.00 3.91
1978 8854 2.433664 ATCGCGACCCAAACGGAC 60.434 61.111 12.93 0.00 34.64 4.79
1979 8855 1.875420 TACATCGCGACCCAAACGGA 61.875 55.000 12.93 0.00 34.64 4.69
1980 8856 1.446445 TACATCGCGACCCAAACGG 60.446 57.895 12.93 0.00 37.81 4.44
1981 8857 1.009903 TGTACATCGCGACCCAAACG 61.010 55.000 12.93 0.00 0.00 3.60
1982 8858 0.719465 CTGTACATCGCGACCCAAAC 59.281 55.000 12.93 6.45 0.00 2.93
1985 8861 0.604073 TTTCTGTACATCGCGACCCA 59.396 50.000 12.93 4.71 0.00 4.51
1986 8862 1.717194 TTTTCTGTACATCGCGACCC 58.283 50.000 12.93 0.00 0.00 4.46
1987 8863 3.541516 CGATTTTTCTGTACATCGCGACC 60.542 47.826 12.93 0.00 32.79 4.79
1992 8868 3.930229 TGGACCGATTTTTCTGTACATCG 59.070 43.478 7.21 7.21 38.59 3.84
1993 8869 5.628134 GTTGGACCGATTTTTCTGTACATC 58.372 41.667 0.00 0.00 0.00 3.06
1994 8870 4.153475 CGTTGGACCGATTTTTCTGTACAT 59.847 41.667 0.00 0.00 0.00 2.29
1995 8871 3.495377 CGTTGGACCGATTTTTCTGTACA 59.505 43.478 0.00 0.00 0.00 2.90
1997 8873 2.481185 GCGTTGGACCGATTTTTCTGTA 59.519 45.455 0.00 0.00 0.00 2.74
1999 8875 1.724654 CGCGTTGGACCGATTTTTCTG 60.725 52.381 0.00 0.00 0.00 3.02
2000 8876 0.515564 CGCGTTGGACCGATTTTTCT 59.484 50.000 0.00 0.00 0.00 2.52
2003 8879 2.559330 GCGCGTTGGACCGATTTT 59.441 55.556 8.43 0.00 0.00 1.82
2004 8880 3.428282 GGCGCGTTGGACCGATTT 61.428 61.111 8.43 0.00 0.00 2.17
2012 8888 3.427425 TTTGGATCGGCGCGTTGG 61.427 61.111 8.43 0.00 0.00 3.77
2013 8889 2.202298 GTTTGGATCGGCGCGTTG 60.202 61.111 8.43 0.00 0.00 4.10
2015 8891 4.728102 TCGTTTGGATCGGCGCGT 62.728 61.111 8.43 0.00 0.00 6.01
2016 8892 3.483665 TTCGTTTGGATCGGCGCG 61.484 61.111 0.00 0.00 0.00 6.86
2017 8893 2.097728 GTTCGTTTGGATCGGCGC 59.902 61.111 0.00 0.00 0.00 6.53
2018 8894 2.394136 CGTTCGTTTGGATCGGCG 59.606 61.111 0.00 0.00 34.88 6.46
2019 8895 2.097728 GCGTTCGTTTGGATCGGC 59.902 61.111 0.00 0.00 38.11 5.54
2030 8906 2.034339 ACAAAAAGTAGACACGCGTTCG 60.034 45.455 10.22 0.71 42.43 3.95
2033 8909 1.862827 GGACAAAAAGTAGACACGCGT 59.137 47.619 5.58 5.58 0.00 6.01
2034 8910 1.136721 CGGACAAAAAGTAGACACGCG 60.137 52.381 3.53 3.53 0.00 6.01
2035 8911 1.398071 GCGGACAAAAAGTAGACACGC 60.398 52.381 0.00 0.00 37.66 5.34
2036 8912 1.193874 GGCGGACAAAAAGTAGACACG 59.806 52.381 0.00 0.00 0.00 4.49
2037 8913 2.223377 CAGGCGGACAAAAAGTAGACAC 59.777 50.000 0.00 0.00 0.00 3.67
2038 8914 2.489971 CAGGCGGACAAAAAGTAGACA 58.510 47.619 0.00 0.00 0.00 3.41
2039 8915 1.197036 GCAGGCGGACAAAAAGTAGAC 59.803 52.381 0.00 0.00 0.00 2.59
2041 9304 1.523758 AGCAGGCGGACAAAAAGTAG 58.476 50.000 0.00 0.00 0.00 2.57
2044 9307 3.057596 TGAATTAGCAGGCGGACAAAAAG 60.058 43.478 0.00 0.00 0.00 2.27
2051 9314 1.476833 GGGAATGAATTAGCAGGCGGA 60.477 52.381 0.00 0.00 0.00 5.54
2053 9316 0.588252 CGGGAATGAATTAGCAGGCG 59.412 55.000 0.00 0.00 0.00 5.52
2054 9317 0.954452 CCGGGAATGAATTAGCAGGC 59.046 55.000 0.00 0.00 0.00 4.85
2058 9321 0.467290 TGGGCCGGGAATGAATTAGC 60.467 55.000 2.18 0.00 0.00 3.09
2061 9324 1.878211 AAATGGGCCGGGAATGAATT 58.122 45.000 2.18 0.00 0.00 2.17
2065 9328 2.741553 GCTTAAAAATGGGCCGGGAATG 60.742 50.000 2.18 0.00 0.00 2.67
2066 9329 1.484653 GCTTAAAAATGGGCCGGGAAT 59.515 47.619 2.18 0.00 0.00 3.01
2068 9331 0.973496 GGCTTAAAAATGGGCCGGGA 60.973 55.000 2.18 0.00 35.08 5.14
2069 9332 1.520192 GGCTTAAAAATGGGCCGGG 59.480 57.895 2.18 0.00 35.08 5.73
2070 9333 1.520192 GGGCTTAAAAATGGGCCGG 59.480 57.895 0.00 0.00 44.91 6.13
2071 9334 1.261238 TGGGGCTTAAAAATGGGCCG 61.261 55.000 0.00 0.00 44.91 6.13
2073 9336 3.364460 AAATGGGGCTTAAAAATGGGC 57.636 42.857 0.00 0.00 0.00 5.36
2074 9337 4.081365 ACGTAAATGGGGCTTAAAAATGGG 60.081 41.667 0.00 0.00 0.00 4.00
2075 9338 5.079689 ACGTAAATGGGGCTTAAAAATGG 57.920 39.130 0.00 0.00 0.00 3.16
2076 9339 4.796312 CGACGTAAATGGGGCTTAAAAATG 59.204 41.667 0.00 0.00 0.00 2.32
2077 9340 4.675933 GCGACGTAAATGGGGCTTAAAAAT 60.676 41.667 0.00 0.00 0.00 1.82
2078 9341 3.366171 GCGACGTAAATGGGGCTTAAAAA 60.366 43.478 0.00 0.00 0.00 1.94
2082 9345 0.462403 GGCGACGTAAATGGGGCTTA 60.462 55.000 0.00 0.00 0.00 3.09
2083 9346 1.747745 GGCGACGTAAATGGGGCTT 60.748 57.895 0.00 0.00 0.00 4.35
2100 9363 4.953868 TCCACGTTGTGTCCGCGG 62.954 66.667 22.12 22.12 0.00 6.46
2101 9364 3.698463 GTCCACGTTGTGTCCGCG 61.698 66.667 0.00 0.00 0.00 6.46
2103 9366 3.698463 GCGTCCACGTTGTGTCCG 61.698 66.667 0.36 0.00 42.22 4.79
2104 9367 2.586635 TGCGTCCACGTTGTGTCC 60.587 61.111 0.36 0.00 42.22 4.02
2114 9377 2.356553 GTAGTTGGCGTGCGTCCA 60.357 61.111 4.22 4.22 0.00 4.02
2115 9378 2.048503 AGTAGTTGGCGTGCGTCC 60.049 61.111 0.00 0.00 0.00 4.79
2118 9381 2.813908 GGGAGTAGTTGGCGTGCG 60.814 66.667 0.00 0.00 0.00 5.34
2119 9382 2.436115 GGGGAGTAGTTGGCGTGC 60.436 66.667 0.00 0.00 0.00 5.34
2120 9383 1.079127 CAGGGGAGTAGTTGGCGTG 60.079 63.158 0.00 0.00 0.00 5.34
2121 9384 2.291043 CCAGGGGAGTAGTTGGCGT 61.291 63.158 0.00 0.00 0.00 5.68
2122 9385 2.584608 CCAGGGGAGTAGTTGGCG 59.415 66.667 0.00 0.00 0.00 5.69
2125 9388 2.998949 GGGCCAGGGGAGTAGTTG 59.001 66.667 4.39 0.00 0.00 3.16
2126 9389 2.687566 CGGGCCAGGGGAGTAGTT 60.688 66.667 4.39 0.00 0.00 2.24
2143 9406 1.511768 GAGACTACCACCGACTGGC 59.488 63.158 0.00 0.00 45.32 4.85
2145 9408 2.957060 TGGAGACTACCACCGACTG 58.043 57.895 0.00 0.00 34.77 3.51
2153 9416 2.576648 AGGGAAAATGGTGGAGACTACC 59.423 50.000 0.00 0.00 38.71 3.18
2154 9417 4.302559 AAGGGAAAATGGTGGAGACTAC 57.697 45.455 0.00 0.00 0.00 2.73
2156 9419 3.500343 CAAAGGGAAAATGGTGGAGACT 58.500 45.455 0.00 0.00 0.00 3.24
2157 9420 2.562738 CCAAAGGGAAAATGGTGGAGAC 59.437 50.000 0.00 0.00 35.59 3.36
2158 9421 2.888212 CCAAAGGGAAAATGGTGGAGA 58.112 47.619 0.00 0.00 35.59 3.71
2172 9435 2.360726 GCCCGGTACACCCAAAGG 60.361 66.667 0.00 0.00 40.04 3.11
2175 9438 2.353189 CATGCCCGGTACACCCAA 59.647 61.111 0.00 0.00 0.00 4.12
2176 9439 2.931105 ACATGCCCGGTACACCCA 60.931 61.111 0.00 0.00 0.00 4.51
2177 9440 2.437716 CACATGCCCGGTACACCC 60.438 66.667 0.00 0.00 0.00 4.61
2214 10142 1.153842 TCCATGCGCTGTCACGTAG 60.154 57.895 9.73 0.00 34.88 3.51
2216 10144 2.738521 GTCCATGCGCTGTCACGT 60.739 61.111 9.73 0.00 34.88 4.49
2286 10222 2.747855 GGCAACGGAGAGGCCAAG 60.748 66.667 5.01 0.00 46.10 3.61
2310 10246 0.392998 CTTGGAAGCACAGCGGGTAT 60.393 55.000 0.00 0.00 0.00 2.73
2312 10248 2.281761 CTTGGAAGCACAGCGGGT 60.282 61.111 0.00 0.00 0.00 5.28
2315 10251 2.119457 GTTTTTCTTGGAAGCACAGCG 58.881 47.619 0.00 0.00 0.00 5.18
2316 10252 2.473816 GGTTTTTCTTGGAAGCACAGC 58.526 47.619 0.00 0.00 0.00 4.40
2317 10253 2.430332 TGGGTTTTTCTTGGAAGCACAG 59.570 45.455 0.00 0.00 0.00 3.66
2320 10256 2.430332 CAGTGGGTTTTTCTTGGAAGCA 59.570 45.455 0.00 0.00 0.00 3.91
2321 10257 2.693074 TCAGTGGGTTTTTCTTGGAAGC 59.307 45.455 0.00 0.00 0.00 3.86
2322 10258 3.243535 GCTCAGTGGGTTTTTCTTGGAAG 60.244 47.826 0.00 0.00 0.00 3.46
2323 10259 2.693074 GCTCAGTGGGTTTTTCTTGGAA 59.307 45.455 0.00 0.00 0.00 3.53
2324 10260 2.091885 AGCTCAGTGGGTTTTTCTTGGA 60.092 45.455 0.00 0.00 0.00 3.53
2325 10261 2.310538 AGCTCAGTGGGTTTTTCTTGG 58.689 47.619 0.00 0.00 0.00 3.61
2326 10262 3.381272 TGAAGCTCAGTGGGTTTTTCTTG 59.619 43.478 0.00 0.00 0.00 3.02
2327 10263 3.631250 TGAAGCTCAGTGGGTTTTTCTT 58.369 40.909 0.00 0.00 0.00 2.52
2328 10264 3.217626 CTGAAGCTCAGTGGGTTTTTCT 58.782 45.455 0.00 0.00 39.58 2.52
2329 10265 2.287849 GCTGAAGCTCAGTGGGTTTTTC 60.288 50.000 12.71 0.00 45.94 2.29
2330 10266 1.683385 GCTGAAGCTCAGTGGGTTTTT 59.317 47.619 12.71 0.00 45.94 1.94
2331 10267 1.322442 GCTGAAGCTCAGTGGGTTTT 58.678 50.000 12.71 0.00 45.94 2.43
2332 10268 0.183492 TGCTGAAGCTCAGTGGGTTT 59.817 50.000 12.71 0.00 45.94 3.27
2333 10269 0.183492 TTGCTGAAGCTCAGTGGGTT 59.817 50.000 12.71 0.00 45.94 4.11
2334 10270 0.183492 TTTGCTGAAGCTCAGTGGGT 59.817 50.000 12.71 0.00 45.94 4.51
2335 10271 1.321474 TTTTGCTGAAGCTCAGTGGG 58.679 50.000 12.71 0.00 45.94 4.61
2336 10272 2.735823 GTTTTTGCTGAAGCTCAGTGG 58.264 47.619 12.71 0.00 45.94 4.00
2337 10273 2.223340 ACGTTTTTGCTGAAGCTCAGTG 60.223 45.455 12.71 0.00 45.94 3.66
2338 10274 2.017049 ACGTTTTTGCTGAAGCTCAGT 58.983 42.857 12.71 0.00 45.94 3.41
2339 10275 2.644078 GACGTTTTTGCTGAAGCTCAG 58.356 47.619 3.61 8.34 46.90 3.35
2340 10276 1.003972 CGACGTTTTTGCTGAAGCTCA 60.004 47.619 3.61 0.00 42.66 4.26
2341 10277 1.660333 CCGACGTTTTTGCTGAAGCTC 60.660 52.381 3.61 0.00 42.66 4.09
2342 10278 0.307760 CCGACGTTTTTGCTGAAGCT 59.692 50.000 3.61 0.00 42.66 3.74
2343 10279 1.268778 GCCGACGTTTTTGCTGAAGC 61.269 55.000 0.00 0.00 42.50 3.86
2344 10280 0.028770 TGCCGACGTTTTTGCTGAAG 59.971 50.000 0.00 0.00 0.00 3.02
2345 10281 0.665835 ATGCCGACGTTTTTGCTGAA 59.334 45.000 0.00 0.00 0.00 3.02
2346 10282 0.665835 AATGCCGACGTTTTTGCTGA 59.334 45.000 0.00 0.00 0.00 4.26
2347 10283 1.189884 CAAATGCCGACGTTTTTGCTG 59.810 47.619 0.00 0.00 32.57 4.41
2348 10284 1.202359 ACAAATGCCGACGTTTTTGCT 60.202 42.857 11.83 1.61 32.57 3.91
2349 10285 1.204792 ACAAATGCCGACGTTTTTGC 58.795 45.000 11.83 1.26 32.57 3.68
2350 10286 3.916405 AAACAAATGCCGACGTTTTTG 57.084 38.095 10.84 10.84 32.57 2.44
2351 10287 4.674475 AGTAAACAAATGCCGACGTTTTT 58.326 34.783 0.00 0.00 32.57 1.94
2352 10288 4.284485 GAGTAAACAAATGCCGACGTTTT 58.716 39.130 0.00 0.00 32.57 2.43
2353 10289 3.304190 GGAGTAAACAAATGCCGACGTTT 60.304 43.478 0.00 0.00 35.33 3.60
2354 10290 2.224784 GGAGTAAACAAATGCCGACGTT 59.775 45.455 0.00 0.00 0.00 3.99
2355 10291 1.802365 GGAGTAAACAAATGCCGACGT 59.198 47.619 0.00 0.00 0.00 4.34
2356 10292 2.073816 AGGAGTAAACAAATGCCGACG 58.926 47.619 0.00 0.00 0.00 5.12
2357 10293 2.414161 GCAGGAGTAAACAAATGCCGAC 60.414 50.000 0.00 0.00 0.00 4.79
2358 10294 1.810151 GCAGGAGTAAACAAATGCCGA 59.190 47.619 0.00 0.00 0.00 5.54
2359 10295 1.812571 AGCAGGAGTAAACAAATGCCG 59.187 47.619 0.00 0.00 34.24 5.69
2360 10296 3.181510 CGTAGCAGGAGTAAACAAATGCC 60.182 47.826 0.00 0.00 34.24 4.40
2361 10297 4.003519 CGTAGCAGGAGTAAACAAATGC 57.996 45.455 0.00 0.00 0.00 3.56
2378 10314 0.899720 TGGTTGGTTCCCTAGCGTAG 59.100 55.000 0.00 0.00 30.00 3.51
2379 10315 0.609662 GTGGTTGGTTCCCTAGCGTA 59.390 55.000 0.00 0.00 30.00 4.42
2380 10316 1.125711 AGTGGTTGGTTCCCTAGCGT 61.126 55.000 0.00 0.00 30.00 5.07
2381 10317 0.391263 GAGTGGTTGGTTCCCTAGCG 60.391 60.000 0.00 0.00 30.00 4.26
2382 10318 0.690762 TGAGTGGTTGGTTCCCTAGC 59.309 55.000 0.00 0.00 0.00 3.42
2383 10319 2.571653 TGATGAGTGGTTGGTTCCCTAG 59.428 50.000 0.00 0.00 0.00 3.02
2384 10320 2.304761 GTGATGAGTGGTTGGTTCCCTA 59.695 50.000 0.00 0.00 0.00 3.53
2385 10321 1.073923 GTGATGAGTGGTTGGTTCCCT 59.926 52.381 0.00 0.00 0.00 4.20
2386 10322 1.202879 TGTGATGAGTGGTTGGTTCCC 60.203 52.381 0.00 0.00 0.00 3.97
2387 10323 2.270352 TGTGATGAGTGGTTGGTTCC 57.730 50.000 0.00 0.00 0.00 3.62
2388 10324 2.030805 GCTTGTGATGAGTGGTTGGTTC 60.031 50.000 0.00 0.00 0.00 3.62
2389 10325 1.956477 GCTTGTGATGAGTGGTTGGTT 59.044 47.619 0.00 0.00 0.00 3.67
2390 10326 1.143684 AGCTTGTGATGAGTGGTTGGT 59.856 47.619 0.00 0.00 0.00 3.67
2391 10327 1.808945 GAGCTTGTGATGAGTGGTTGG 59.191 52.381 0.00 0.00 0.00 3.77
2392 10328 2.483106 CTGAGCTTGTGATGAGTGGTTG 59.517 50.000 0.00 0.00 0.00 3.77
2393 10329 2.551721 CCTGAGCTTGTGATGAGTGGTT 60.552 50.000 0.00 0.00 0.00 3.67
2394 10330 1.002888 CCTGAGCTTGTGATGAGTGGT 59.997 52.381 0.00 0.00 0.00 4.16
2395 10331 1.735386 CCTGAGCTTGTGATGAGTGG 58.265 55.000 0.00 0.00 0.00 4.00
2396 10332 1.085091 GCCTGAGCTTGTGATGAGTG 58.915 55.000 0.00 0.00 35.50 3.51
2397 10333 0.390866 CGCCTGAGCTTGTGATGAGT 60.391 55.000 0.00 0.00 36.60 3.41
2398 10334 1.088340 CCGCCTGAGCTTGTGATGAG 61.088 60.000 0.00 0.00 36.60 2.90
2399 10335 1.078918 CCGCCTGAGCTTGTGATGA 60.079 57.895 0.00 0.00 36.60 2.92
2400 10336 2.110967 CCCGCCTGAGCTTGTGATG 61.111 63.158 0.00 0.00 36.60 3.07
2401 10337 2.270205 CCCGCCTGAGCTTGTGAT 59.730 61.111 0.00 0.00 36.60 3.06
2402 10338 4.704833 GCCCGCCTGAGCTTGTGA 62.705 66.667 0.00 0.00 36.60 3.58
2475 10425 2.348104 CGACTCCCACCGTGATGGA 61.348 63.158 0.00 0.00 43.02 3.41
2481 10431 0.321298 CCAAAATCGACTCCCACCGT 60.321 55.000 0.00 0.00 0.00 4.83
2549 10500 2.490217 CTCAGATCCGCCGTCGTT 59.510 61.111 0.00 0.00 0.00 3.85
2605 10556 0.472471 AGTCGGCTCCCAAAACTTCA 59.528 50.000 0.00 0.00 0.00 3.02
2662 10613 2.180769 CGATCACTCGCCGGAACA 59.819 61.111 5.05 0.00 38.20 3.18
2693 10644 2.568090 CATGTCCGCTTTGCCCAC 59.432 61.111 0.00 0.00 0.00 4.61
2708 10659 3.077907 CCGGAACACCTCCACCAT 58.922 61.111 0.00 0.00 45.74 3.55
2709 10660 3.948719 GCCGGAACACCTCCACCA 61.949 66.667 5.05 0.00 45.74 4.17
2720 10671 3.950794 GATGCACCACTCGCCGGAA 62.951 63.158 5.05 0.00 0.00 4.30
2851 10803 1.744368 CGACCGAGACCTTCTCCGA 60.744 63.158 0.00 0.00 40.34 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.